Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
HIAT1	0	genome.wustl.edu	37	1	100515493	100515493	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	100515493	100515493	A	G	SNP	HIAT1	ENST00000370152	human	ensembl	74_37	+1	known	missense	c.113	p.Y38C	1.000	superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,prints_Tet-R_TetA/multi-R_MdtG	-	no_errors	HIAT1	HGNC	ENSG00000156875				129	0	0	91	24	20.8696
RTCA	0	genome.wustl.edu	37	1	100736176	100736176	+	Silent	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	100736176	100736176	A	G	SNP	RTCA	ENST00000260563	human	ensembl	74_37	+1	known	silent	c.393	p.E131	0.998	pfam_RNA3'_phos_cyclase_dom,superfamily_RNA3'P_cycl/enolpyr_Trfase_a/b,tigrfam_RNA3'_term_phos_cyc_type_1	pfam_RNA3'_phos_cyclase_dom,pfam_RNA3'-term_phos_cycl_insert,superfamily_RNA3'P_cycl/enolpyr_Trfase_a/b,superfamily_RNA3'-term_phos_cycl_insert,tigrfam_RNA3'_term_phos_cyc_type_1	-	no_errors	RTCA	HGNC	ENSG00000137996				444	0	0	211	103	32.8025
CDC14A	0	genome.wustl.edu	37	1	100928305	100928305	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	100928305	100928305	C	T	SNP	CDC14A	ENST00000361544	human	ensembl	74_37	+1	known	missense	c.706	p.R236C	1.000	pfam_Dual-sp_phosphatase_cat-dom,smart_Dual-sp_phosphatase_subgr_cat	pfam_Dual-sp_phosphatase_cat-dom,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Dual-sp_phosphatase_subgr_cat,smart_Tyr_Pase_cat,pfscan_Tyr/Dual-sp_Pase,pfscan_Dual-sp_phosphatase_subgr_cat	-	no_errors	CDC14A	HGNC	ENSG00000079335				142	0	0	71	30	29.703
SLC30A7	0	genome.wustl.edu	37	1	101431476	101431476	+	Splice_Site	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	101431476	101431476	T	C	SNP	SLC30A7	ENST00000357650	human	ensembl	74_37	+1	novel	splice_site	c.1083+2	e10+2	1.000	-	-	-	no_errors	SLC30A7	HGNC	ENSG00000162695				143	0	0	77	6	7.22892
DPH5	0	genome.wustl.edu	37	1	101458257	101458257	+	Silent	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	101458257	101458257	T	C	SNP	DPH5	ENST00000370109	human	ensembl	74_37	-1	known	silent	c.570	p.V190	0.939	pfam_4pyrrol_Mease,superfamily_4pyrrol_Mease,pirsf_Dphthn_synthase,tigrfam_Dphthn_synthase	pfam_4pyrrol_Mease,superfamily_4pyrrol_Mease,pirsf_Dphthn_synthase,tigrfam_Dphthn_synthase	-	no_errors	DPH5	HGNC	ENSG00000117543				225	0	0	123	65	34.5745
UBE4B	0	genome.wustl.edu	37	1	10211616	10211616	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	10211616	10211616	A	G	SNP	UBE4B	ENST00000343090	human	ensembl	74_37	+1	known	missense	c.2923	p.T975A	1.000	pfam_Ub_conjug_fac_E4_core	pfam_Ub_conjug_fac_E4_core,pfam_Ubox_domain,smart_Ubox_domain	-	no_errors	UBE4B	HGNC	ENSG00000130939				195	0	0	131	17	11.4865
COL11A1	0	genome.wustl.edu	37	1	103474066	103474066	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	103474066	103474066	G	C	SNP	COL11A1	ENST00000358392	human	ensembl	74_37	-1	known	missense	c.1672	p.P558A	1.000	pfam_Collagen	pfam_Collagen,pfam_Fib_collagen_C,pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,superfamily_Fibrinogen_a/b/g_C_dom,smart_Laminin_G,smart_Fib_collagen_C	-	no_errors	COL11A1	HGNC	ENSG00000060718				147	0	0	74	31	29.5238
KIF1B	0	genome.wustl.edu	37	1	10381811	10381811	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	10381811	10381811	C	T	SNP	KIF1B	ENST00000263934	human	ensembl	74_37	+1	known	missense	c.2116	p.R706W	1.000	NULL	pfam_Kinesin_motor_dom,pfam_Kinesin-like,pfam_Pleckstrin_homology,pfam_KIF1B,pfam_FHA_dom,superfamily_P-loop_NTPase,superfamily_SMAD_FHA_domain,smart_Kinesin_motor_dom,smart_FHA_dom,smart_Pleckstrin_homology,pfscan_FHA_dom,pfscan_Pleckstrin_homology,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF1B	HGNC	ENSG00000054523				115	0	0	74	31	29.5238
C1orf194	0	genome.wustl.edu	37	1	109649218	109649218	+	Nonstop_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	109649218	109649218	A	G	SNP	C1orf194	ENST00000460065	human	ensembl	74_37	-1	known	nonstop	c.145	p.*49Q	0.374	NULL	NULL	-	no_errors	C1orf194	HGNC	ENSG00000179902				344	0	0	220	35	13.7255
CELSR2	0	genome.wustl.edu	37	1	109813589	109813589	+	Silent	SNP	T	T	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	109813589	109813589	T	G	SNP	CELSR2	ENST00000271332	human	ensembl	74_37	+1	known	silent	c.7524	p.P2508	0.849	pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like	pfam_Cadherin,pfam_DUF3497,pfam_Laminin_G,pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_EG-like_dom,pfam_EGF_laminin,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,smart_EGF_laminin,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_GPS_dom,pfscan_Laminin_G,pfscan_Cadherin,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_Cadherin,prints_GPCR_2_secretin-like	-	no_errors	CELSR2	HGNC	ENSG00000143126				531	0	0	312	102	24.6377
AMPD2	0	genome.wustl.edu	37	1	110172064	110172064	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	110172064	110172064	A	G	SNP	AMPD2	ENST00000256578	human	ensembl	74_37	+1	known	missense	c.1976	p.Y659C	1.000	pfam_A/AMP_deaminase_dom,pirsf_AMP_deaminase,tigrfam_AMP_deaminase	pfam_A/AMP_deaminase_dom,pirsf_AMP_deaminase,tigrfam_AMP_deaminase	-	no_errors	AMPD2	HGNC	ENSG00000116337				559	2	0.356506	385	45	10.4651
EPS8L3	0	genome.wustl.edu	37	1	110301240	110301240	+	Silent	SNP	C	C	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	110301240	110301240	C	A	SNP	EPS8L3	ENST00000369805	human	ensembl	74_37	-1	known	silent	c.510	p.G170	0.003	NULL	pfam_PTB,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,superfamily_SAM/pointed,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	EPS8L3	HGNC	ENSG00000198758				120	0	0	58	18	23.6842
SLC16A4	0	genome.wustl.edu	37	1	110925584	110925584	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	110925584	110925584	T	C	SNP	SLC16A4	ENST00000369779	human	ensembl	74_37	-1	known	missense	c.92	p.N31S	1.000	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC16A4	HGNC	ENSG00000168679				136	0	0	76	30	28.3019
PROK1	0	genome.wustl.edu	37	1	110996681	110996681	+	Silent	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	110996681	110996681	C	T	SNP	PROK1	ENST00000271331	human	ensembl	74_37	+1	known	silent	c.171	p.G57	0.980	pfam_Prokineticin_domain	pfam_Prokineticin_domain	-	no_errors	PROK1	HGNC	ENSG00000143125				56	0	0	29	14	32.5581
MASP2	0	genome.wustl.edu	37	1	11105575	11105575	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	11105575	11105575	G	A	SNP	MASP2	ENST00000400897	human	ensembl	74_37	-1	known	missense	c.434	p.A145V	0.000	pfam_EGF-like_Ca-bd_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom	pfam_Peptidase_S1,pfam_CUB_dom,pfam_Sushi_SCR_CCP,pfam_EGF-like_Ca-bd_dom,superfamily_Trypsin-like_Pept_dom,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_CUB_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_Sushi_SCR_CCP,smart_Peptidase_S1,pfscan_CUB_dom,pfscan_Sushi_SCR_CCP,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	MASP2	HGNC	ENSG00000009724				44	0	0	26	10	27.7778
DDX20	0	genome.wustl.edu	37	1	112299330	112299330	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	112299330	112299330	G	C	SNP	DDX20	ENST00000369702	human	ensembl	74_37	+1	known	missense	c.364	p.D122H	1.000	pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX20	HGNC	ENSG00000064703				127	0	0	54	20	27.027
LRIG2	0	genome.wustl.edu	37	1	113653136	113653136	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	113653136	113653136	A	G	SNP	LRIG2	ENST00000361127	human	ensembl	74_37	+1	known	missense	c.1750	p.N584D	1.000	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Leu-rich_rpt,pfam_Immunoglobulin,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	LRIG2	HGNC	ENSG00000198799				115	0	0	62	25	28.7356
LRIG2	0	genome.wustl.edu	37	1	113657106	113657106	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	113657106	113657106	C	T	SNP	LRIG2	ENST00000361127	human	ensembl	74_37	+1	known	missense	c.2138	p.A713V	0.999	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Leu-rich_rpt,pfam_Immunoglobulin,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	LRIG2	HGNC	ENSG00000198799				147	0	0	65	31	32.2917
OLFML3	0	genome.wustl.edu	37	1	114524259	114524259	+	Silent	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	114524259	114524259	T	C	SNP	OLFML3	ENST00000320334	human	ensembl	74_37	+1	known	silent	c.1089	p.P363	0.067	pfam_Olfac-like,smart_Olfac-like,pfscan_Olfac-like	pfam_Olfac-like,smart_Olfac-like,pfscan_Olfac-like	-	no_errors	OLFML3	HGNC	ENSG00000116774				145	0	0	81	6	6.89655
AMPD1	0	genome.wustl.edu	37	1	115226954	115226954	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	115226954	115226954	T	C	SNP	AMPD1	ENST00000520113	human	ensembl	74_37	-1	known	missense	c.512	p.K171R	0.999	pirsf_AMP_deaminase,tigrfam_AMP_deaminase	pfam_A/AMP_deaminase_dom,pirsf_AMP_deaminase,tigrfam_AMP_deaminase	-	no_errors	AMPD1	HGNC	ENSG00000116748				133	0	0	55	22	28.5714
SDF4	0	genome.wustl.edu	37	1	1154242	1154242	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	1154242	1154242	G	A	SNP	SDF4	ENST00000465727	human	ensembl	74_37	-1	known	missense	c.659	p.A220V	1.000	NULL	pfscan_EF_hand_dom	-	no_errors	SDF4	HGNC	ENSG00000078808				319	0	0	218	13	5.62771
DRAXIN	0	genome.wustl.edu	37	1	11766661	11766661	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	11766661	11766661	G	C	SNP	DRAXIN	ENST00000294485	human	ensembl	74_37	+1	known	missense	c.346	p.A116P	0.875	NULL	NULL	-	no_errors	DRAXIN	HGNC	ENSG00000162490				40	0	0	21	14	40
WARS2	0	genome.wustl.edu	37	1	119575543	119575543	+	Silent	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	119575543	119575543	A	G	SNP	WARS2	ENST00000235521	human	ensembl	74_37	-1	known	silent	c.1074	p.G358	0.004	tigrfam_Trp-tRNA-ligase	pfam_aa-tRNA-synth_Ic,prints_Trp-tRNA-ligase,tigrfam_Trp-tRNA-ligase	-	no_errors	WARS2	HGNC	ENSG00000116874				131	0	0	67	30	30.9278
ADAM30	0	genome.wustl.edu	37	1	120436588	120436588	+	Silent	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	120436588	120436588	T	C	SNP	ADAM30	ENST00000369400	human	ensembl	74_37	-1	known	silent	c.2372	p.*791	0.002	NULL	pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_ADAM_Cys-rich,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_EG-like_dom,pfscan_Peptidase_M12B,prints_Blood-coag_inhib_Disintegrin	-	no_errors	ADAM30	HGNC	ENSG00000134249				546	0	0	451	24	5.05263
NBPF9	0	genome.wustl.edu	37	1	144828665	144828665	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	144828665	144828665	T	C	SNP	NBPF9	ENST00000281815	human	ensembl	74_37	+1	known	missense	c.505	p.F169L	0.002	pfam_NBPF_dom	pfam_NBPF_dom	-	no_errors	NBPF9	HGNC	ENSG00000168614				553	0	0	305	99	24.505
PDE4DIP	0	genome.wustl.edu	37	1	144930752	144930752	+	Silent	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	144930752	144930752	T	C	SNP	PDE4DIP	ENST00000313431	human	ensembl	74_37	-1	known	silent	c.957	p.L319	0.998	NULL	superfamily_ARM-type_fold	-	no_errors	PDE4DIP	HGNC	ENSG00000178104				273	1	0.364964	213	36	14.4578
ANKRD35	0	genome.wustl.edu	37	1	145562258	145562258	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	145562258	145562258	G	A	SNP	ANKRD35	ENST00000355594	human	ensembl	74_37	+1	known	missense	c.1946	p.S649N	1.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	ANKRD35	HGNC	ENSG00000198483				157	0	0	56	37	39.7849
HIST2H3PS2	0	genome.wustl.edu	37	1	149400326	149400326	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	149400326	149400326	G	A	SNP	HIST2H3PS2	ENST00000392948	human	ensembl	74_37	-1	putative	missense	c.217	p.R73C	1.000	pfam_Histone_core_D,superfamily_Histone-fold,smart_Histone_H3,prints_Histone_H3	pfam_Histone_core_D,superfamily_Histone-fold,smart_Histone_H3,prints_Histone_H3	-	no_errors	HIST2H3PS2	HGNC	ENSG00000203818				79	0	0	35	8	18.6047
HIST2H2AC	0	genome.wustl.edu	37	1	149858676	149858676	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	149858676	149858676	A	G	SNP	HIST2H2AC	ENST00000331380	human	ensembl	74_37	+1	known	missense	c.152	p.Y51C	1.000	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2A,prints_Histone_H2A	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2A,prints_Histone_H2A	-	no_errors	HIST2H2AC	HGNC	ENSG00000184260				140	0	0	61	27	30.6818
CTSS	0	genome.wustl.edu	37	1	150724313	150724313	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	150724313	150724313	A	G	SNP	CTSS	ENST00000368985	human	ensembl	74_37	-1	known	missense	c.571	p.Y191H	1.000	pfam_Peptidase_C1A_C,smart_Peptidase_C1A_C	pfam_Peptidase_C1A_C,pfam_Prot_inhib_I29,smart_Prot_inhib_I29,smart_Peptidase_C1A_C,prints_Peptidase_C1A_C	-	no_errors	CTSS	HGNC	ENSG00000163131				218	0	0	84	43	33.8583
SETDB1	0	genome.wustl.edu	37	1	150915397	150915397	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	150915397	150915397	C	T	SNP	SETDB1	ENST00000271640	human	ensembl	74_37	+1	known	missense	c.743	p.A248V	1.000	NULL	pfam_SET_dom,pfam_Pre-SET_dom,pfam_Methyl_CpG_DNA-bd,superfamily_DNA-bd_dom,smart_Tudor,smart_Methyl_CpG_DNA-bd,smart_Pre-SET_Zn-bd_sub,smart_SET_dom,pfscan_Methyl_CpG_DNA-bd,pfscan_SET_dom,pfscan_Pre-SET_dom,pfscan_Post-SET_dom	-	no_errors	SETDB1	HGNC	ENSG00000143379				200	0	0	105	14	11.7647
GABPB2	0	genome.wustl.edu	37	1	151062940	151062940	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	151062940	151062940	T	C	SNP	GABPB2	ENST00000368918	human	ensembl	74_37	+1	known	missense	c.167	p.V56A	1.000	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	GABPB2	HGNC	ENSG00000143458				152	0	0	97	18	15.6522
POGZ	0	genome.wustl.edu	37	1	151378275	151378275	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	151378275	151378275	T	C	SNP	POGZ	ENST00000271715	human	ensembl	74_37	-1	known	missense	c.3236	p.H1079R	1.000	pfam_HTH_CenpB_DNA-bd_dom,superfamily_Homeodomain-like,smart_HTH_CenpB_DNA-bd_dom	pfam_DDE_SF_endonuclease_CENPB-like,pfam_HTH_CenpB_DNA-bd_dom,superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_HTH_CenpB_DNA-bd_dom,pfscan_Znf_C2H2	-	no_errors	POGZ	HGNC	ENSG00000143442				174	0	0	89	55	38.1944
CGN	0	genome.wustl.edu	37	1	151491656	151491656	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	151491656	151491656	C	T	SNP	CGN	ENST00000271636	human	ensembl	74_37	+1	known	missense	c.661	p.R221W	0.021	NULL	pfam_Myosin_tail	-	no_errors	CGN	HGNC	ENSG00000143375				332	0	0	137	58	29.7436
CGN	0	genome.wustl.edu	37	1	151502450	151502450	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	151502450	151502450	G	A	SNP	CGN	ENST00000271636	human	ensembl	74_37	+1	known	silent	c.2172	p.T724	0.121	NULL	pfam_Myosin_tail	-	no_errors	CGN	HGNC	ENSG00000143375				118	0	0	52	29	35.8025
CGN	0	genome.wustl.edu	37	1	151502999	151502999	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	151502999	151502999	C	T	SNP	CGN	ENST00000271636	human	ensembl	74_37	+1	known	missense	c.2348	p.A783V	0.000	NULL	pfam_Myosin_tail	-	no_errors	CGN	HGNC	ENSG00000143375				156	1	0.636943	62	27	30.3371
SNX27	0	genome.wustl.edu	37	1	151664929	151664929	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	151664929	151664929	A	G	SNP	SNX27	ENST00000368843	human	ensembl	74_37	+1	known	missense	c.1258	p.T420A	0.996	NULL	pfam_Phox,pfam_PDZ,pfam_Ras-assoc,superfamily_Phox,superfamily_PDZ,smart_PDZ,smart_Phox,pfscan_PDZ,pfscan_Phox,pfscan_Ras-assoc	-	no_errors	SNX27	HGNC	ENSG00000143376				71	0	0	51	8	13.5593
RORC	0	genome.wustl.edu	37	1	151785369	151785369	+	RNA	SNP	T	T	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	151785369	151785369	T	A	SNP	RORC	ENST00000480719	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RORC	HGNC	ENSG00000143365				37	0	0	15	9	37.5
JTB	0	genome.wustl.edu	37	1	153947257	153947257	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	153947257	153947257	G	A	SNP	JTB	ENST00000271843	human	ensembl	74_37	-1	known	silent	c.339	p.V113	0.000	pfam_JTB	pfam_JTB	-	no_errors	JTB	HGNC	ENSG00000143543				140	0	0	69	41	37.2727
JTB	0	genome.wustl.edu	37	1	153949675	153949675	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	153949675	153949675	C	T	SNP	JTB	ENST00000271843	human	ensembl	74_37	-1	known	nonsense	c.54	p.W18*	0.980	NULL	pfam_JTB	-	no_errors	JTB	HGNC	ENSG00000143543				283	0	0	217	22	9.20502
UBAP2L	0	genome.wustl.edu	37	1	154227697	154227697	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	154227697	154227697	T	C	SNP	UBAP2L	ENST00000361546	human	ensembl	74_37	+1	known	missense	c.1979	p.V660A	1.000	NULL	pfam_DUF3697_Uba2,superfamily_UBA-like,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk	-	no_errors	UBAP2L	HGNC	ENSG00000143569				188	1	0.529101	132	9	6.38298
ATP8B2	0	genome.wustl.edu	37	1	154317917	154317917	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	154317917	154317917	T	C	SNP	ATP8B2	ENST00000368489	human	ensembl	74_37	+1	known	missense	c.2689	p.S897P	1.000	superfamily_HAD-like_dom,tigrfam_ATPase_P-typ_Plipid-transp,tigrfam_Cation_transp_P_typ_ATPase	pfam_ATPase_P-typ_transduc_dom_A,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Plipid-transp,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP8B2	HGNC	ENSG00000143515				889	1	0.11236	490	251	33.8731
SHC1	0	genome.wustl.edu	37	1	154938847	154938847	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	154938847	154938847	G	A	SNP	SHC1	ENST00000368445	human	ensembl	74_37	-1	known	missense	c.1130	p.A377V	0.006	NULL	pfam_PTB/PI_dom,pfam_SH2,smart_PTB/PI_dom,smart_SH2,pfscan_PTB/PI_dom,pfscan_SH2,prints_PID_Shc-like,prints_SH2	-	no_errors	SHC1	HGNC	ENSG00000160691				49	0	0	46	4	8
HCN3	0	genome.wustl.edu	37	1	155257627	155257627	+	Silent	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	155257627	155257627	T	C	SNP	HCN3	ENST00000368358	human	ensembl	74_37	+1	known	silent	c.1698	p.S566	0.003	NULL	pfam_Ion_trans_N,pfam_Ion_trans_dom,pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG/ELK/ERG	-	no_errors	HCN3	HGNC	ENSG00000143630				168	0	0	103	14	11.9658
FDPS	0	genome.wustl.edu	37	1	155289536	155289536	+	RNA	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	155289536	155289536	C	T	SNP	FDPS	ENST00000489324	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.042	-	-	-	no_errors	FDPS	HGNC	ENSG00000160752				339	0	0	155	82	34.5992
TMEM51	0	genome.wustl.edu	37	1	15541903	15541903	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	15541903	15541903	G	A	SNP	TMEM51	ENST00000376008	human	ensembl	74_37	+1	known	missense	c.320	p.G107E	0.000	NULL	NULL	-	no_errors	TMEM51	HGNC	ENSG00000171729				60	0	0	20	17	45.9459
ARHGEF2	0	genome.wustl.edu	37	1	155920975	155920975	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	155920975	155920975	C	T	SNP	ARHGEF2	ENST00000368315	human	ensembl	74_37	-1	known	missense	c.2351	p.R784Q	0.915	NULL	pfam_DH-domain,pfam_Pleckstrin_homology,superfamily_DH-domain,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_DH-domain	-	no_errors	ARHGEF2	HGNC	ENSG00000116584				15	0	0	7	8	53.3333
ARHGEF2	0	genome.wustl.edu	37	1	155932848	155932848	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	155932848	155932848	T	C	SNP	ARHGEF2	ENST00000368315	human	ensembl	74_37	-1	known	missense	c.854	p.D285G	0.999	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_DH-domain	pfam_DH-domain,pfam_Pleckstrin_homology,superfamily_DH-domain,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_DH-domain	-	no_errors	ARHGEF2	HGNC	ENSG00000116584				128	0	0	73	7	8.75
TMEM79	0	genome.wustl.edu	37	1	156256064	156256064	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	156256064	156256064	C	T	SNP	TMEM79	ENST00000357501	human	ensembl	74_37	+1	known	missense	c.55	p.R19W	0.630	NULL	NULL	-	no_errors	TMEM79	HGNC	ENSG00000163472				139	0	0	86	7	7.52688
RHBG	0	genome.wustl.edu	37	1	156352561	156352561	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	156352561	156352561	A	G	SNP	RHBG	ENST00000368246	human	ensembl	74_37	+1	known	missense	c.1135	p.I379V	0.045	pfam_NH4_transpt_AmtB-like_dom,superfamily_NH4_transpt_AmtB-like_dom	pfam_NH4_transpt_AmtB-like_dom,superfamily_NH4_transpt_AmtB-like_dom,prints_RhesusRHD	-	no_errors	RHBG	HGNC	ENSG00000132677				330	1	0.302115	217	33	13.2
RHBG	0	genome.wustl.edu	37	1	156354310	156354310	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	156354310	156354310	A	G	SNP	RHBG	ENST00000451864	human	ensembl	74_37	+1	known	missense	c.1106	p.H369R	0.000	NULL	pfam_NH4_transpt_AmtB-like_dom,superfamily_NH4_transpt_AmtB-like_dom,prints_RhesusRHD	-	no_errors	RHBG	HGNC	ENSG00000132677				136	1	0.729927	60	24	28.5714
RHBG	0	genome.wustl.edu	37	1	156354646	156354646	+	RNA	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	156354646	156354646	C	T	SNP	RHBG	ENST00000494874	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	RHBG	HGNC	ENSG00000132677				40	0	0	16	8	33.3333
BCAN	0	genome.wustl.edu	37	1	156621381	156621381	+	Silent	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	156621381	156621381	T	C	SNP	BCAN	ENST00000329117	human	ensembl	74_37	+1	known	silent	c.1197	p.S399	0.305	NULL	pfam_Link,pfam_C-type_lectin,pfam_Ig_V-set,pfam_Sushi_SCR_CCP,pfam_EG-like_dom,superfamily_C-type_lectin_fold,superfamily_Sushi_SCR_CCP,smart_Ig_sub,smart_Ig_V-set_subgr,smart_Link,smart_EG-like_dom,smart_C-type_lectin,smart_Sushi_SCR_CCP,prints_Link,prints_AntifreezeII,pfscan_EG-like_dom,pfscan_C-type_lectin,pfscan_Link,pfscan_Sushi_SCR_CCP,pfscan_Ig-like_dom	-	no_errors	BCAN	HGNC	ENSG00000132692				199	0	0	79	42	34.7107
ARHGEF11	0	genome.wustl.edu	37	1	156917590	156917590	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	156917590	156917590	C	T	SNP	ARHGEF11	ENST00000368194	human	ensembl	74_37	-1	known	missense	c.2312	p.R771Q	1.000	superfamily_DH-domain	pfam_RGS-like_dom,pfam_DH-domain,pfam_PDZ,pfam_RGS_dom,superfamily_DH-domain,superfamily_Regulat_G_prot_signal_superfam,superfamily_PDZ,smart_PDZ,smart_Regulat_G_prot_signal_superfam,smart_DH-domain,smart_Pleckstrin_homology,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_Regulat_G_prot_signal_superfam,pfscan_DH-domain	-	no_errors	ARHGEF11	HGNC	ENSG00000132694				53	0	0	22	12	35.2941
ETV3	0	genome.wustl.edu	37	1	157104017	157104017	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	157104017	157104017	T	C	SNP	ETV3	ENST00000368192	human	ensembl	74_37	-1	known	missense	c.287	p.Y96C	1.000	pfam_Ets_dom,smart_Ets_dom,pfscan_Ets_dom,prints_Ets_dom	pfam_Ets_dom,smart_Ets_dom,pfscan_Ets_dom,prints_Ets_dom	-	no_errors	ETV3	HGNC	ENSG00000117036				68	0	0	51	4	7.27273
FCRL2	0	genome.wustl.edu	37	1	157738348	157738348	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	157738348	157738348	T	C	SNP	FCRL2	ENST00000361516	human	ensembl	74_37	-1	known	missense	c.739	p.S247G	0.000	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	FCRL2	HGNC	ENSG00000132704				355	0	0	193	73	27.4436
OR6Y1	0	genome.wustl.edu	37	1	158517519	158517519	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	158517519	158517519	T	C	SNP	OR6Y1	ENST00000302617	human	ensembl	74_37	-1	known	missense	c.377	p.D126G	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR6Y1	HGNC	ENSG00000197532				122	0	0	57	16	21.9178
IGSF9	0	genome.wustl.edu	37	1	159902365	159902365	+	Silent	SNP	G	G	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	159902365	159902365	G	T	SNP	IGSF9	ENST00000368094	human	ensembl	74_37	-1	known	silent	c.1182	p.S394	1.000	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	IGSF9	HGNC	ENSG00000085552				139	0	0	69	40	36.6972
PIGM	0	genome.wustl.edu	37	1	160000350	160000350	+	Silent	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	160000350	160000350	A	G	SNP	PIGM	ENST00000368090	human	ensembl	74_37	-1	known	silent	c.1180	p.L394	0.996	pfam_Mannosyltransferase_DXD	pfam_Mannosyltransferase_DXD	-	no_errors	PIGM	HGNC	ENSG00000143315				228	0	0	158	9	5.38922
PLEKHM2	0	genome.wustl.edu	37	1	16059137	16059137	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	16059137	16059137	C	T	SNP	PLEKHM2	ENST00000375799	human	ensembl	74_37	+1	known	missense	c.2836	p.P946S	0.443	NULL	pfam_Run,pfam_Pleckstrin_homology,smart_Run,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Run	-	no_errors	PLEKHM2	HGNC	ENSG00000116786				24	0	0	14	3	17.6471
USF1	0	genome.wustl.edu	37	1	161011634	161011634	+	Silent	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	161011634	161011634	C	T	SNP	USF1	ENST00000368020	human	ensembl	74_37	-1	known	silent	c.279	p.A93	0.156	NULL	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	USF1	HGNC	ENSG00000158773				132	0	0	67	27	28.7234
DEDD	0	genome.wustl.edu	37	1	161092087	161092087	+	Silent	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	161092087	161092087	T	C	SNP	DEDD	ENST00000368005	human	ensembl	74_37	-1	known	silent	c.897	p.L299	1.000	NULL	pfam_DED,superfamily_DEATH-like_dom,smart_DED,pfscan_DED	-	no_errors	DEDD	HGNC	ENSG00000158796				121	0	0	54	27	33.3333
FCGR2A	0	genome.wustl.edu	37	1	161487831	161487831	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	161487831	161487831	A	G	SNP	FCGR2A	ENST00000271450	human	ensembl	74_37	+1	known	missense	c.847	p.T283A	0.006	NULL	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	FCGR2A	HGNC	ENSG00000143226				156	0	0	56	33	37.0787
HSPA6	0	genome.wustl.edu	37	1	161495245	161495245	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	161495245	161495245	G	A	SNP	HSPA6	ENST00000309758	human	ensembl	74_37	+1	known	missense	c.797	p.R266H	1.000	pfam_Hsp_70_fam,pfam_MreB_Mrl	pfam_Hsp_70_fam,pfam_MreB_Mrl,prints_Hsp_70_fam	-	no_errors	HSPA6	HGNC	ENSG00000173110				50	0	0	28	12	30
SPEN	0	genome.wustl.edu	37	1	16199578	16199578	+	Silent	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	16199578	16199578	T	C	SNP	SPEN	ENST00000375759	human	ensembl	74_37	+1	known	silent	c.351	p.G117	1.000	NULL	pfam_RRM_dom,pfam_SPOC_C,superfamily_SPOC_like_C_dom,smart_RRM_dom,pfscan_SPOC_met,pfscan_RRM_dom	-	no_errors	SPEN	HGNC	ENSG00000065526				132	1	0.75188	58	36	38.2979
UHMK1	0	genome.wustl.edu	37	1	162467856	162467856	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	162467856	162467856	G	A	SNP	UHMK1	ENST00000489294	human	ensembl	74_37	+1	known	silent	c.66	p.L22	0.989	superfamily_Kinase-like_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_RRM_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_RRM_dom,pfscan_RRM_dom,pfscan_Prot_kinase_dom	-	no_errors	UHMK1	HGNC	ENSG00000152332				74	0	0	35	17	32.6923
SPEN	0	genome.wustl.edu	37	1	16255224	16255224	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	16255224	16255224	C	T	SNP	SPEN	ENST00000375759	human	ensembl	74_37	+1	known	missense	c.2489	p.S830F	1.000	NULL	pfam_RRM_dom,pfam_SPOC_C,superfamily_SPOC_like_C_dom,smart_RRM_dom,pfscan_SPOC_met,pfscan_RRM_dom	-	no_errors	SPEN	HGNC	ENSG00000065526				176	0	0	74	37	33.3333
DDR2	0	genome.wustl.edu	37	1	162731167	162731167	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	162731167	162731167	G	A	SNP	DDR2	ENST00000367921	human	ensembl	74_37	+1	known	missense	c.1022	p.R341Q	1.000	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Kinase-like_dom,superfamily_Galactose-bd-like,smart_Coagulation_fac_5/8-C_type_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	DDR2	HGNC	ENSG00000162733				91	0	0	48	17	26.1538
CLCNKA	0	genome.wustl.edu	37	1	16355671	16355671	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	16355671	16355671	G	A	SNP	CLCNKA	ENST00000331433	human	ensembl	74_37	+1	known	silent	c.1104	p.A368	0.000	pfam_Cl-channel_volt-gated,superfamily_Cl-channel_core	pfam_Cl-channel_volt-gated,pfam_CBS_dom,superfamily_Cl-channel_core,smart_CBS_dom,prints_Cl-channel_volt-gated,prints_Cl_channel-K	-	no_errors	CLCNKA	HGNC	ENSG00000186510				72	0	0	41	14	25.4545
EPHA2	0	genome.wustl.edu	37	1	16475193	16475193	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	16475193	16475193	C	T	SNP	EPHA2	ENST00000358432	human	ensembl	74_37	-1	known	missense	c.503	p.R168H	1.000	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ephrin_rcpt_lig-bd_dom,superfamily_Galactose-bd-like,smart_Ephrin_rcpt_lig-bd_dom	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,pfam_Interferon_alpha/beta_rcpt_bsu,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt_N_dom,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_dom	-	no_errors	EPHA2	HGNC	ENSG00000142627				91	0	0	31	23	42.5926
RXRG	0	genome.wustl.edu	37	1	165398092	165398092	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	165398092	165398092	C	T	SNP	RXRG	ENST00000359842	human	ensembl	74_37	-1	known	missense	c.161	p.R54Q	0.995	pfam_Nuc_recep-AF1	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Nuc_recep-AF1,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Retinoid-X_rcpt/HNF4,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,prints_COUP_TF	-	no_errors	RXRG	HGNC	ENSG00000143171				86	0	0	46	19	29.2308
ENSG00000227775	0	genome.wustl.edu	37	1	1664021	1664021	+	RNA	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	1664021	1664021	G	A	SNP	ENSG00000227775	ENST00000424604	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RP1-283E3.4	Clone_based_vega_gene	ENSG00000227775				15	0	0	15	7	31.8182
NECAP2	0	genome.wustl.edu	37	1	16767271	16767271	+	Splice_Site	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	16767271	16767271	G	A	SNP	NECAP2	ENST00000457722	human	ensembl	74_37	+1	known	splice_site	c.14+1	e1+1	0.101	-	-	-	no_errors	NECAP2	HGNC	ENSG00000157191				105	0	0	52	15	22.3881
ADCY10	0	genome.wustl.edu	37	1	167825464	167825464	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	167825464	167825464	C	T	SNP	ADCY10	ENST00000367851	human	ensembl	74_37	-1	known	missense	c.2110	p.D704N	0.723	superfamily_P-loop_NTPase,pirsf_Adenylate_cylcase_typ10	pfam_A/G_cyclase,superfamily_A/G_cyclase,superfamily_P-loop_NTPase,pirsf_Adenylate_cylcase_typ10,pfscan_A/G_cyclase	-	no_errors	ADCY10	HGNC	ENSG00000143199				276	0	0	197	21	9.63303
F5	0	genome.wustl.edu	37	1	169510030	169510030	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	169510030	169510030	A	G	SNP	F5	ENST00000367797	human	ensembl	74_37	-1	known	missense	c.4298	p.L1433P	0.030	NULL	pfam_Coagulation_fac_5/8-C_type_dom,pfam_Cu-oxidase_3,superfamily_Galactose-bd-like,superfamily_Cupredoxin,smart_Coagulation_fac_5/8-C_type_dom,pfscan_Coagulation_fac_5/8-C_type_dom	-	no_errors	F5	HGNC	ENSG00000198734				122	1	0.813008	79	26	24.7619
ESPNP	0	genome.wustl.edu	37	1	17017662	17017662	+	RNA	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	17017662	17017662	G	A	SNP	ESPNP	ENST00000414828	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.001	-	-	-	no_errors	ESPNP	HGNC	ENSG00000268869				116	0	0	77	16	17.2043
MROH9	0	genome.wustl.edu	37	1	170940930	170940930	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	170940930	170940930	G	A	SNP	MROH9	ENST00000367759	human	ensembl	74_37	+1	known	silent	c.522	p.E174	0.731	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	MROH9	HGNC	ENSG00000117501				598	0	0	311	110	26.1283
PRRC2C	0	genome.wustl.edu	37	1	171505354	171505354	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	171505354	171505354	T	C	SNP	PRRC2C	ENST00000392078	human	ensembl	74_37	+1	known	missense	c.2230	p.S744P	1.000	NULL	pfam_BAT2_N	-	no_errors	PRRC2C	HGNC	ENSG00000117523				47	0	0	17	8	32
SUCO	0	genome.wustl.edu	37	1	172538216	172538216	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	172538216	172538216	G	T	SNP	SUCO	ENST00000608151	human	ensembl	74_37	+1	known	missense	c.1267	p.D423Y	1.000	NULL	pfam_Sad1_UNC_C,superfamily_Galactose-bd-like	-	no_errors	SUCO	HGNC	ENSG00000094975				152	0	0	116	8	6.45161
SLC9C2	0	genome.wustl.edu	37	1	173493985	173493985	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	173493985	173493985	A	G	SNP	SLC9C2	ENST00000367714	human	ensembl	74_37	-1	known	missense	c.2447	p.L816P	0.973	NULL	pfam_Cation/H_exchanger,pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,pfscan_cNMP-bd_dom	-	no_errors	SLC9C2	HGNC	ENSG00000162753				211	0	0	168	9	5.08475
KLHL20	0	genome.wustl.edu	37	1	173751271	173751271	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	173751271	173751271	G	T	SNP	KLHL20	ENST00000209884	human	ensembl	74_37	+1	known	missense	c.1648	p.A550S	1.000	pfam_Kelch_1,smart_Kelch_1,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BACK,pfam_BTB_POZ,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL20	HGNC	ENSG00000076321				277	0	0	179	28	13.5266
PADI2	0	genome.wustl.edu	37	1	17418998	17418998	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	17418998	17418998	C	T	SNP	PADI2	ENST00000375486	human	ensembl	74_37	-1	known	missense	c.560	p.R187Q	1.000	pfam_Prot_Arg_deaminase_cen_dom,superfamily_Prot_Arg_deaminase_cen_dom,pirsf_Protein-arginine_deiminase_sub	pfam_PAD_C,pfam_Prot_Arg_deaminase_cen_dom,pfam_PAD_N,superfamily_Prot_Arg_deaminase_cen_dom,superfamily_Cupredoxin,pirsf_Protein-arginine_deiminase_sub	-	no_errors	PADI2	HGNC	ENSG00000117115				104	0	0	52	23	30.6667
TNR	0	genome.wustl.edu	37	1	175299243	175299243	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	175299243	175299243	T	C	SNP	TNR	ENST00000263525	human	ensembl	74_37	-1	known	missense	c.3760	p.K1254E	1.000	pfam_Fibrinogen_a/b/g_C_dom,superfamily_Fibrinogen_a/b/g_C_dom,smart_Fibrinogen_a/b/g_C_dom	pfam_Fibronectin_type3,pfam_Fibrinogen_a/b/g_C_dom,pfam_EGF_extracell,superfamily_Fibrinogen_a/b/g_C_dom,superfamily_Fibronectin_type3,smart_EG-like_dom,smart_Fibronectin_type3,smart_Fibrinogen_a/b/g_C_dom,pfscan_Fibronectin_type3	-	no_errors	TNR	HGNC	ENSG00000116147				152	0	0	84	10	10.6383
TNR	0	genome.wustl.edu	37	1	175365680	175365680	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	175365680	175365680	G	A	SNP	TNR	ENST00000263525	human	ensembl	74_37	-1	known	missense	c.1240	p.H414Y	1.000	superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Fibrinogen_a/b/g_C_dom,pfam_EGF_extracell,superfamily_Fibrinogen_a/b/g_C_dom,superfamily_Fibronectin_type3,smart_EG-like_dom,smart_Fibronectin_type3,smart_Fibrinogen_a/b/g_C_dom,pfscan_Fibronectin_type3	-	no_errors	TNR	HGNC	ENSG00000116147				135	0	0	58	16	21.6216
ABL2	0	genome.wustl.edu	37	1	179090927	179090927	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	179090927	179090927	G	A	SNP	ABL2	ENST00000502732	human	ensembl	74_37	-1	known	silent	c.763	p.L255	1.000	pfscan_SH2	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_F-actin_binding,pfam_Prot_kinase_dom,pfam_SH2,pfam_SH3_domain,pfam_SH3_2,pfam_SH3-like_bac-type,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_SH3_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_F-actin_binding,pfscan_SH2,pfscan_SH3_domain,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2	-	no_errors	ABL2	HGNC	ENSG00000143322				76	0	0	28	20	41.6667
AXDND1	0	genome.wustl.edu	37	1	179347776	179347776	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	179347776	179347776	A	T	SNP	AXDND1	ENST00000367618	human	ensembl	74_37	+1	known	missense	c.379	p.I127F	1.000	NULL	pfam_Axonemal_dynein_light_chain	-	no_errors	AXDND1	HGNC	ENSG00000162779				118	0	0	64	4	5.88235
XPR1	0	genome.wustl.edu	37	1	180794433	180794433	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	180794433	180794433	A	G	SNP	XPR1	ENST00000367590	human	ensembl	74_37	+1	known	missense	c.1087	p.T363A	1.000	pfam_EXS_C	pfam_EXS_C,pfam_SPX_N	-	no_errors	XPR1	HGNC	ENSG00000143324				260	0	0	149	20	11.8343
CACNA1E	0	genome.wustl.edu	37	1	181620510	181620510	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	181620510	181620510	T	C	SNP	CACNA1E	ENST00000367573	human	ensembl	74_37	+1	known	missense	c.988	p.Y330H	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,pfscan_EF_hand_dom,prints_VDCCAlpha1,prints_VDCC_R_a1su	-	no_errors	CACNA1E	HGNC	ENSG00000198216				219	1	0.454545	143	17	10.625
FAM129A	0	genome.wustl.edu	37	1	184868364	184868364	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	184868364	184868364	C	T	SNP	FAM129A	ENST00000367511	human	ensembl	74_37	-1	known	missense	c.134	p.R45H	0.999	NULL	NULL	-	no_errors	FAM129A	HGNC	ENSG00000135842				203	0	0	107	43	28.6667
TRMT1L	0	genome.wustl.edu	37	1	185113148	185113148	+	Silent	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	185113148	185113148	T	C	SNP	TRMT1L	ENST00000367506	human	ensembl	74_37	-1	known	silent	c.669	p.K223	1.000	NULL	pfam_TRM1,pfam_tRNA_Trfase_Trm5/Tyw2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	TRMT1L	HGNC	ENSG00000121486				52	0	0	47	3	6
HMCN1	0	genome.wustl.edu	37	1	185897791	185897791	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	185897791	185897791	A	T	SNP	HMCN1	ENST00000271588	human	ensembl	74_37	+1	known	missense	c.1544	p.D515V	1.000	smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_G2_nidogen/fibulin_G2F,pfam_EGF-like_Ca-bd_dom,pfam_Thrombospondin_1_rpt,superfamily_GFP,superfamily_Thrombospondin_1_rpt,superfamily_Growth_fac_rcpt_N_dom,superfamily_Cadherin-like,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Thrombospondin_1_rpt,smart_G2_nidogen/fibulin_G2F,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_G2_nidogen/fibulin_G2F,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like_dom	-	no_errors	HMCN1	HGNC	ENSG00000143341				262	0	0	179	10	5.29101
HMCN1	0	genome.wustl.edu	37	1	185984507	185984507	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	185984507	185984507	A	G	SNP	HMCN1	ENST00000271588	human	ensembl	74_37	+1	known	missense	c.4847	p.Y1616C	0.943	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_G2_nidogen/fibulin_G2F,pfam_EGF-like_Ca-bd_dom,pfam_Thrombospondin_1_rpt,superfamily_GFP,superfamily_Thrombospondin_1_rpt,superfamily_Growth_fac_rcpt_N_dom,superfamily_Cadherin-like,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Thrombospondin_1_rpt,smart_G2_nidogen/fibulin_G2F,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_G2_nidogen/fibulin_G2F,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like_dom	-	no_errors	HMCN1	HGNC	ENSG00000143341				135	0	0	70	8	10.2564
PLA2G4A	0	genome.wustl.edu	37	1	186919810	186919810	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	186919810	186919810	T	C	SNP	PLA2G4A	ENST00000367466	human	ensembl	74_37	+1	known	missense	c.1286	p.I429T	1.000	pfam_LysoPLipase_cat_dom,superfamily_Acyl_Trfase/lysoPLipase,smart_LysoPLipase_cat_dom,pfscan_LysoPLipase_cat_dom	pfam_LysoPLipase_cat_dom,pfam_C2_dom,superfamily_Acyl_Trfase/lysoPLipase,superfamily_C2_dom,smart_C2_dom,smart_LysoPLipase_cat_dom,pfscan_C2_dom,pfscan_LysoPLipase_cat_dom	-	no_errors	PLA2G4A	HGNC	ENSG00000116711				39	0	0	18	5	21.7391
GLRX2	0	genome.wustl.edu	37	1	193066846	193066846	+	Silent	SNP	G	G	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	193066846	193066846	G	T	SNP	GLRX2	ENST00000367440	human	ensembl	74_37	-1	known	silent	c.231	p.S77	0.539	pfam_Glutaredoxin,superfamily_Thioredoxin-like_fold,prints_Glutaredoxin_subgr,tigrfam_Glutaredoxin_euk/vir	pfam_Glutaredoxin,superfamily_Thioredoxin-like_fold,prints_Glutaredoxin_subgr,tigrfam_Glutaredoxin_euk/vir	-	no_errors	GLRX2	HGNC	ENSG00000023572				81	0	0	51	22	30.137
UBR4	0	genome.wustl.edu	37	1	19437312	19437312	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	19437312	19437312	G	T	SNP	UBR4	ENST00000375267	human	ensembl	74_37	-1	known	missense	c.11816	p.A3939D	1.000	superfamily_ARM-type_fold	superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_Znf_N-recognin_met,pfscan_Znf_N-recognin	-	no_errors	UBR4	HGNC	ENSG00000127481				271	2	0.732601	140	59	29.6482
UBR4	0	genome.wustl.edu	37	1	19473418	19473418	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	19473418	19473418	A	G	SNP	UBR4	ENST00000375267	human	ensembl	74_37	-1	known	missense	c.7706	p.V2569A	1.000	superfamily_ARM-type_fold	superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_Znf_N-recognin_met,pfscan_Znf_N-recognin	-	no_errors	UBR4	HGNC	ENSG00000127481				518	2	0.384615	321	24	6.95652
KCNT2	0	genome.wustl.edu	37	1	196227479	196227479	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	196227479	196227479	C	T	SNP	KCNT2	ENST00000294725	human	ensembl	74_37	-1	known	missense	c.3056	p.R1019Q	0.969	NULL	pfam_K_chnl_Ca-activ_BK_asu,pfam_2pore_dom_K_chnl_dom	-	no_errors	KCNT2	HGNC	ENSG00000162687				181	0	0	115	13	10.1562
AKR7A2	0	genome.wustl.edu	37	1	19632510	19632510	+	Splice_Site	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	19632510	19632510	A	G	SNP	AKR7A2	ENST00000235835	human	ensembl	74_37	-1	known	splice_site	c.918+2	e6+2	0.999	-	-	-	no_errors	AKR7A2	HGNC	ENSG00000053371				187	0	0	79	22	21.7822
ASPM	0	genome.wustl.edu	37	1	197073120	197073120	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	197073120	197073120	G	A	SNP	ASPM	ENST00000367409	human	ensembl	74_37	-1	known	missense	c.5261	p.A1754V	1.000	pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,superfamily_ARM-type_fold,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS	pfam_IQ_motif_EF-hand-BS,pfam_CAMSAP_CH,pfam_CH-domain,superfamily_CH-domain,superfamily_P-loop_NTPase,superfamily_ARM-type_fold,smart_CH-domain,smart_IQ_motif_EF-hand-BS,pfscan_CH-domain,pfscan_IQ_motif_EF-hand-BS	-	no_errors	ASPM	HGNC	ENSG00000066279				277	0	0	185	13	6.56566
ZBTB41	0	genome.wustl.edu	37	1	197144177	197144177	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	197144177	197144177	A	G	SNP	ZBTB41	ENST00000367405	human	ensembl	74_37	-1	known	missense	c.1948	p.Y650H	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB41	HGNC	ENSG00000177888				168	1	0.591716	120	10	7.69231
ZBTB41	0	genome.wustl.edu	37	1	197145784	197145784	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	197145784	197145784	G	A	SNP	ZBTB41	ENST00000367405	human	ensembl	74_37	-1	known	missense	c.1789	p.H597Y	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB41	HGNC	ENSG00000177888				169	1	0.588235	97	11	10.1852
CAMSAP2	0	genome.wustl.edu	37	1	200817864	200817864	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	200817864	200817864	A	G	SNP	CAMSAP2	ENST00000236925	human	ensembl	74_37	+1	known	missense	c.2000	p.N667S	0.951	NULL	pfam_CKK_domain,pfam_CAMSAP_CH,pfam_CH-domain,superfamily_PRC_barrel-like,superfamily_CH-domain	-	no_errors	CAMSAP2	HGNC	ENSG00000118200				220	0	0	131	8	5.7554
CACNA1S	0	genome.wustl.edu	37	1	201012511	201012511	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	201012511	201012511	T	C	SNP	CACNA1S	ENST00000362061	human	ensembl	74_37	-1	known	missense	c.4946	p.Q1649R	0.024	NULL	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCCAlpha1,prints_VDCC_L_a1su,prints_VDCC_L_a1ssu	-	no_errors	CACNA1S	HGNC	ENSG00000081248				185	0	0	88	49	35.7664
CACNA1S	0	genome.wustl.edu	37	1	201027620	201027620	+	Splice_Site	SNP	C	C	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	201027620	201027620	C	A	SNP	CACNA1S	ENST00000362061	human	ensembl	74_37	-1	known	splice_site	c.3526-1	e28-1	1.000	-	-	-	no_errors	CACNA1S	HGNC	ENSG00000081248				63	0	0	14	16	53.3333
CACNA1S	0	genome.wustl.edu	37	1	201058496	201058496	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	201058496	201058496	C	T	SNP	CACNA1S	ENST00000362061	human	ensembl	74_37	-1	known	missense	c.790	p.G264S	0.996	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCCAlpha1,prints_VDCC_L_a1su,prints_VDCC_L_a1ssu	-	no_errors	CACNA1S	HGNC	ENSG00000081248				64	0	0	27	21	43.75
IGFN1	0	genome.wustl.edu	37	1	201183362	201183362	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	201183362	201183362	C	T	SNP	IGFN1	ENST00000335211	human	ensembl	74_37	+1	known	missense	c.8786	p.A2929V	0.020	pfam_Ig_I-set,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	IGFN1	HGNC	ENSG00000163395				68	0	0	55	10	15.3846
IGFN1	0	genome.wustl.edu	37	1	201187691	201187691	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	201187691	201187691	G	A	SNP	IGFN1	ENST00000335211	human	ensembl	74_37	+1	known	missense	c.9803	p.G3268D	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	IGFN1	HGNC	ENSG00000163395				61	0	0	33	13	28.2609
ELF3	0	genome.wustl.edu	37	1	201983122	201983122	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	201983122	201983122	T	C	SNP	ELF3	ENST00000359651	human	ensembl	74_37	+1	known	missense	c.971	p.M324T	1.000	pfam_Ets_dom,smart_Ets_dom,pfscan_Ets_dom,prints_Ets_dom	pfam_Ets_dom,pfam_Pointed_dom,superfamily_SAM/pointed,smart_Pointed_dom,smart_Ets_dom,pfscan_Ets_dom,prints_Ets_dom	-	no_errors	ELF3	HGNC	ENSG00000163435				46	0	0	32	3	8.57143
ELF3	0	genome.wustl.edu	37	1	201983137	201983137	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	201983137	201983137	T	G	SNP	ELF3	ENST00000359651	human	ensembl	74_37	+1	known	missense	c.986	p.L329R	1.000	pfam_Ets_dom,smart_Ets_dom,pfscan_Ets_dom,prints_Ets_dom	pfam_Ets_dom,pfam_Pointed_dom,superfamily_SAM/pointed,smart_Pointed_dom,smart_Ets_dom,pfscan_Ets_dom,prints_Ets_dom	-	no_errors	ELF3	HGNC	ENSG00000163435				43	0	0	32	2	5.88235
ELF3	0	genome.wustl.edu	37	1	201984339	201984339	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	201984339	201984339	A	G	SNP	ELF3	ENST00000359651	human	ensembl	74_37	+1	known	missense	c.1004	p.Y335C	1.000	pfam_Ets_dom,smart_Ets_dom,pfscan_Ets_dom,prints_Ets_dom	pfam_Ets_dom,pfam_Pointed_dom,superfamily_SAM/pointed,smart_Pointed_dom,smart_Ets_dom,pfscan_Ets_dom,prints_Ets_dom	-	no_errors	ELF3	HGNC	ENSG00000163435				117	0	0	100	10	9.09091
LGR6	0	genome.wustl.edu	37	1	202287753	202287753	+	Silent	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	202287753	202287753	C	T	SNP	LGR6	ENST00000367278	human	ensembl	74_37	+1	known	silent	c.2322	p.H774	0.993	pfam_GPCR_Rhodpsn,prints_Gphrmn_rcpt_fam	pfam_Leu-rich_rpt,pfam_GPCR_Rhodpsn,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,prints_Gphrmn_rcpt_fam,prints_GPCR_Rhodpsn	-	no_errors	LGR6	HGNC	ENSG00000133067				142	0	0	109	12	9.91736
SOX13	0	genome.wustl.edu	37	1	204082173	204082173	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	204082173	204082173	G	A	SNP	SOX13	ENST00000367204	human	ensembl	74_37	+1	known	missense	c.130	p.A44T	0.018	NULL	pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	-	no_errors	SOX13	HGNC	ENSG00000143842				31	0	0	15	9	37.5
SOX13	0	genome.wustl.edu	37	1	204091106	204091106	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	204091106	204091106	C	A	SNP	SOX13	ENST00000367204	human	ensembl	74_37	+1	known	missense	c.854	p.P285H	0.998	NULL	pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	-	no_errors	SOX13	HGNC	ENSG00000143842				34	0	0	13	10	43.4783
PLEKHA6	0	genome.wustl.edu	37	1	204228417	204228417	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	204228417	204228417	G	C	SNP	PLEKHA6	ENST00000272203	human	ensembl	74_37	-1	known	missense	c.976	p.R326G	1.000	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	PLEKHA6	HGNC	ENSG00000143850				124	0	0	92	6	6.12245
PLEKHA6	0	genome.wustl.edu	37	1	204230441	204230441	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	204230441	204230441	G	A	SNP	PLEKHA6	ENST00000272203	human	ensembl	74_37	-1	known	missense	c.517	p.R173W	0.437	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	PLEKHA6	HGNC	ENSG00000143850				108	1	0.917431	67	33	33
LRRN2	0	genome.wustl.edu	37	1	204588668	204588668	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	204588668	204588668	G	A	SNP	LRRN2	ENST00000367175	human	ensembl	74_37	-1	known	silent	c.453	p.N151	1.000	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	pfam_Ig_I-set,pfam_Leu-rich_rpt,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	LRRN2	HGNC	ENSG00000170382				305	0	0	134	80	37.3832
CNTN2	0	genome.wustl.edu	37	1	205030997	205030997	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	205030997	205030997	G	A	SNP	CNTN2	ENST00000331830	human	ensembl	74_37	+1	known	silent	c.978	p.Q326	1.000	NULL	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	CNTN2	HGNC	ENSG00000184144				230	0	0	187	16	7.88177
CDK18	0	genome.wustl.edu	37	1	205492416	205492416	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	205492416	205492416	C	T	SNP	CDK18	ENST00000506784	human	ensembl	74_37	+1	known	missense	c.121	p.R41W	0.001	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	CDK18	HGNC	ENSG00000117266				146	0	0	58	20	25.641
PM20D1	0	genome.wustl.edu	37	1	205801816	205801816	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	205801816	205801816	C	T	SNP	PM20D1	ENST00000367136	human	ensembl	74_37	-1	known	missense	c.1195	p.V399I	0.002	pfam_Peptidase_M20	pfam_Peptidase_M20,pfam_Peptidase_M20_dimer,superfamily_Peptidase_M20_dimer	-	no_errors	PM20D1	HGNC	ENSG00000162877				149	1	0.666667	69	30	30.303
SLC26A9	0	genome.wustl.edu	37	1	205884266	205884266	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	205884266	205884266	C	A	SNP	SLC26A9	ENST00000340781	human	ensembl	74_37	-1	known	missense	c.2418	p.E806D	0.001	NULL	pfam_Sulph_transpt,pfam_STAS_dom,superfamily_STAS_dom,pfscan_STAS_dom,tigrfam_SulP_transpt	-	no_errors	SLC26A9	HGNC	ENSG00000174502				135	0	0	62	34	35.4167
IKBKE	0	genome.wustl.edu	37	1	206649592	206649592	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	206649592	206649592	C	T	SNP	IKBKE	ENST00000367120	human	ensembl	74_37	+1	known	missense	c.427	p.R143C	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	IKBKE	HGNC	ENSG00000143466				97	0	0	60	30	33.3333
PLXNA2	0	genome.wustl.edu	37	1	208225688	208225688	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	208225688	208225688	T	C	SNP	PLXNA2	ENST00000367033	human	ensembl	74_37	-1	known	missense	c.2977	p.T993A	1.000	pfam_IPT,superfamily_Ig_E-set,smart_IPT	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_Semap_dom,pfam_IPT,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_IPT,pfscan_Semap_dom	-	no_errors	PLXNA2	HGNC	ENSG00000076356				150	0	0	87	5	5.43478
MUL1	0	genome.wustl.edu	37	1	20827485	20827485	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	20827485	20827485	C	T	SNP	MUL1	ENST00000264198	human	ensembl	74_37	-1	known	missense	c.757	p.A253T	0.999	NULL	pfam_MULAN,pfscan_Znf_RING	-	no_errors	MUL1	HGNC	ENSG00000090432				154	0	0	55	28	33.7349
CAMK1G	0	genome.wustl.edu	37	1	209785386	209785386	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	209785386	209785386	C	A	SNP	CAMK1G	ENST00000009105	human	ensembl	74_37	+1	known	missense	c.1165	p.L389I	0.997	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	CAMK1G	HGNC	ENSG00000008118				160	0	0	101	18	15.1261
LAMB3	0	genome.wustl.edu	37	1	209800773	209800773	+	Silent	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	209800773	209800773	C	T	SNP	LAMB3	ENST00000356082	human	ensembl	74_37	-1	known	silent	c.1440	p.P480	0.001	pfscan_EGF_laminin	pfam_EGF_laminin,pfam_Laminin_N,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,pfscan_EGF_laminin,pfscan_Laminin_N	-	no_errors	LAMB3	HGNC	ENSG00000196878				104	0	0	39	19	32.7586
NEK2	0	genome.wustl.edu	37	1	211847636	211847636	+	Splice_Site	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	211847636	211847636	A	G	SNP	NEK2	ENST00000540251	human	ensembl	74_37	-1	known	splice_site	c.185+2	e1+2	0.994	-	-	-	no_errors	NEK2	HGNC	ENSG00000117650				127	0	0	85	5	5.55556
LPGAT1	0	genome.wustl.edu	37	1	212002654	212002654	+	RNA	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	212002654	212002654	C	T	SNP	LPGAT1	ENST00000488600	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	LPGAT1	HGNC	ENSG00000123684				287	0	0	141	74	34.4186
PTPN14	0	genome.wustl.edu	37	1	214557902	214557902	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	214557902	214557902	G	A	SNP	PTPN14	ENST00000366956	human	ensembl	74_37	-1	known	silent	c.1296	p.S432	0.999	pirsf_Tyr_Pase_non-rcpt_typ-14/21	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_FERM_central,pfam_FERM_N,pfam_FERM_PH-like_C,pfam_Dual-sp_phosphatase_cat-dom,superfamily_FERM_central,smart_Band_41_domain,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pirsf_Tyr_Pase_non-rcpt_typ-14/21,pfscan_FERM_domain,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt,prints_Band_41_fam	-	no_errors	PTPN14	HGNC	ENSG00000152104				374	1	0.266667	192	91	32.1555
CENPF	0	genome.wustl.edu	37	1	214826249	214826249	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	214826249	214826249	G	T	SNP	CENPF	ENST00000366955	human	ensembl	74_37	+1	known	missense	c.8239	p.D2747Y	0.283	NULL	pfam_Centromere_CenpF_N,pfam_Centromere_CenpF_leu-rich_rpt,pfam_CenpF/LEK1_Rb-prot-bd	-	no_errors	CENPF	HGNC	ENSG00000117724				158	0	0	73	37	33.6364
KCTD3	0	genome.wustl.edu	37	1	215792534	215792534	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	215792534	215792534	T	C	SNP	KCTD3	ENST00000259154	human	ensembl	74_37	+1	known	missense	c.1787	p.L596P	0.990	NULL	pfam_T1-type_BTB,superfamily_BTB/POZ_fold,superfamily_WD40_repeat_dom,smart_BTB/POZ-like,smart_WD40_repeat,pfscan_BTB/POZ-like	-	no_errors	KCTD3	HGNC	ENSG00000136636				194	0	0	112	46	29.1139
SPATA17	0	genome.wustl.edu	37	1	218036154	218036154	+	Silent	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	218036154	218036154	A	G	SNP	SPATA17	ENST00000366933	human	ensembl	74_37	+1	known	silent	c.1044	p.S348	0.083	NULL	pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS	-	no_errors	SPATA17	HGNC	ENSG00000162814				227	0	0	112	48	30
HSPG2	0	genome.wustl.edu	37	1	22158013	22158013	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	22158013	22158013	C	A	SNP	HSPG2	ENST00000374695	human	ensembl	74_37	-1	known	missense	c.11395	p.G3799C	1.000	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,pfscan_Laminin_G	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Laminin_G,pfam_Laminin_B_type_IV,pfam_EGF_laminin,pfam_LDrepeatLR_classA_rpt,pfam_EG-like_dom,superfamily_ConA-like_lec_gl_sf,superfamily_LDrepeatLR_classA_rpt,smart_SEA_dom,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Laminin_B_subgr,smart_EGF_laminin,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_LDrepeatLR_classA_rpt,pfscan_SEA_dom,pfscan_Ig-like_dom,prints_LDrepeatLR_classA_rpt	-	no_errors	HSPG2	HGNC	ENSG00000142798				143	0	0	110	7	5.98291
TP53BP2	0	genome.wustl.edu	37	1	223987704	223987704	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	223987704	223987704	C	T	SNP	TP53BP2	ENST00000343537	human	ensembl	74_37	-1	known	missense	c.1382	p.R461H	1.000	NULL	pfam_Ankyrin_rpt,pfam_SH3_domain,pfam_SH3_2,superfamily_Ankyrin_rpt-contain_dom,superfamily_SH3_domain,smart_Ankyrin_rpt,smart_SH3_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SH3_domain,prints_Spectrin_alpha_SH3	-	no_errors	TP53BP2	HGNC	ENSG00000143514				123	0	0	83	18	17.8218
CDC42	0	genome.wustl.edu	37	1	22417930	22417930	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	22417930	22417930	A	G	SNP	CDC42	ENST00000421089	human	ensembl	74_37	+1	known	missense	c.622	p.K208E	1.000	pfam_Small_GTPase,superfamily_P-loop_NTPase,smart_Small_GTPase_Rho,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Ras,prints_Small_GTPase	pfam_Small_GTPase,pfam_MIRO-like,superfamily_P-loop_NTPase,smart_Small_GTPase_Rho,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Ras,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	CDC42	HGNC	ENSG00000070831				153	0	0	75	32	29.9065
TMEM63A	0	genome.wustl.edu	37	1	226058796	226058796	+	Silent	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	226058796	226058796	C	T	SNP	TMEM63A	ENST00000366835	human	ensembl	74_37	-1	known	silent	c.351	p.L117	0.987	NULL	pfam_DUF221	-	no_errors	TMEM63A	HGNC	ENSG00000196187				75	0	0	40	9	18.3673
ITPKB	0	genome.wustl.edu	37	1	226924812	226924812	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	226924812	226924812	G	A	SNP	ITPKB	ENST00000272117	human	ensembl	74_37	-1	known	silent	c.348	p.A116	0.004	NULL	pfam_IPK	-	no_errors	ITPKB	HGNC	ENSG00000143772				94	0	0	40	13	24.5283
OBSCN	0	genome.wustl.edu	37	1	228451850	228451850	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	228451850	228451850	C	T	SNP	OBSCN	ENST00000422127	human	ensembl	74_37	+1	known	missense	c.4619	p.A1540V	0.000	pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,pfam_DH-domain,pfam_IQ_motif_EF-hand-BS,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_Fibronectin_type3,superfamily_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_IQ_motif_EF-hand-BS,smart_DH-domain,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,pfscan_DH-domain	-	no_errors	OBSCN	HGNC	ENSG00000154358				97	0	0	37	16	30.1887
OBSCN	0	genome.wustl.edu	37	1	228496809	228496809	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	228496809	228496809	T	C	SNP	OBSCN	ENST00000422127	human	ensembl	74_37	+1	known	missense	c.12749	p.V4250A	1.000	pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,pfam_DH-domain,pfam_IQ_motif_EF-hand-BS,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_Fibronectin_type3,superfamily_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_IQ_motif_EF-hand-BS,smart_DH-domain,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,pfscan_DH-domain	-	no_errors	OBSCN	HGNC	ENSG00000154358				23	0	0	6	4	40
TTC13	0	genome.wustl.edu	37	1	231061307	231061307	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	231061307	231061307	T	C	SNP	TTC13	ENST00000366661	human	ensembl	74_37	-1	known	missense	c.1544	p.Q515R	1.000	NULL	pfam_TPR_1,pfam_TPR_2,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC13	HGNC	ENSG00000143643				211	1	0.471698	105	50	32.2581
EPHB2	0	genome.wustl.edu	37	1	23111412	23111412	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	23111412	23111412	G	A	SNP	EPHB2	ENST00000400191	human	ensembl	74_37	+1	known	silent	c.654	p.S218	0.106	pirsf_Tyr_kinase_ephrin_rcpt	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,pfam_Tyr-kin_ephrin_A/B_rcpt-like,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt_N_dom,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	EPHB2	HGNC	ENSG00000133216				132	0	0	72	27	27.2727
GNPAT	0	genome.wustl.edu	37	1	231409726	231409726	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	231409726	231409726	A	G	SNP	GNPAT	ENST00000366647	human	ensembl	74_37	+1	known	missense	c.1661	p.K554R	0.003	NULL	pfam_Plipid/glycerol_acylTrfase,smart_Plipid/glycerol_acylTrfase	-	no_errors	GNPAT	HGNC	ENSG00000116906				145	0	0	89	32	26.4463
SPRTN	0	genome.wustl.edu	37	1	231487133	231487133	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	231487133	231487133	G	A	SNP	SPRTN	ENST00000295050	human	ensembl	74_37	+1	known	silent	c.534	p.P178	0.002	pfam_SprT-like_domain,smart_SprT-like_domain	pfam_SprT-like_domain,smart_SprT-like_domain,smart_Znf_Rad18_put	-	no_errors	SPRTN	HGNC	ENSG00000010072				127	0	0	67	27	28.7234
PCNXL2	0	genome.wustl.edu	37	1	233334764	233334764	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	233334764	233334764	A	G	SNP	PCNXL2	ENST00000258229	human	ensembl	74_37	-1	known	missense	c.2987	p.I996T	0.142	NULL	pfam_Pecanex,superfamily_Trypsin-like_Pept_dom	-	no_errors	PCNXL2	HGNC	ENSG00000135749				17	0	0	6	7	53.8462
RER1	0	genome.wustl.edu	37	1	2333596	2333596	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	2333596	2333596	G	A	SNP	RER1	ENST00000378512	human	ensembl	74_37	+1	known	silent	c.426	p.V142	0.001	NULL	pfam_Rer1	-	no_errors	RER1	HGNC	ENSG00000157916				58	0	0	39	4	9.30233
KDM1A	0	genome.wustl.edu	37	1	23399803	23399803	+	Silent	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	23399803	23399803	A	G	SNP	KDM1A	ENST00000542151	human	ensembl	74_37	+1	known	silent	c.1641	p.S547	1.000	pfam_Amino_oxidase,pirsf_Hist_Lys-spec_deMease	pfam_Amino_oxidase,pfam_SWIRM,pfam_FAD-dep_OxRdtase,pfam_Pyr_OxRdtase_NAD-bd_dom,pfam_FAD_bind_dom,superfamily_Homeodomain-like,pirsf_Hist_Lys-spec_deMease,pfscan_SWIRM	-	no_errors	KDM1A	HGNC	ENSG00000004487				171	0	0	126	13	9.35252
SLC35F3	0	genome.wustl.edu	37	1	234444889	234444889	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	234444889	234444889	G	T	SNP	SLC35F3	ENST00000366617	human	ensembl	74_37	+1	known	missense	c.444	p.K148N	1.000	NULL	pfam_DMT,pfam_Tpt_PEP_trans_dom,pfam_SLC35_F1/F2/F6	-	no_errors	SLC35F3	HGNC	ENSG00000183780				113	0	0	57	19	25
B3GALNT2	0	genome.wustl.edu	37	1	235613631	235613631	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	235613631	235613631	T	C	SNP	B3GALNT2	ENST00000366600	human	ensembl	74_37	-1	known	missense	c.1393	p.T465A	1.000	NULL	pfam_Glyco_trans_31	-	no_errors	B3GALNT2	HGNC	ENSG00000162885				114	1	0.869565	44	30	40.5405
LYST	0	genome.wustl.edu	37	1	235973006	235973006	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	235973006	235973006	G	T	SNP	LYST	ENST00000389793	human	ensembl	74_37	-1	known	missense	c.1112	p.P371H	0.984	NULL	pfam_BEACH_dom,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	LYST	HGNC	ENSG00000143669				354	0	0	253	17	6.2963
NID1	0	genome.wustl.edu	37	1	236143949	236143949	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	236143949	236143949	G	T	SNP	NID1	ENST00000264187	human	ensembl	74_37	-1	known	missense	c.3232	p.L1078I	1.000	pfam_LDLR_classB_rpt,smart_LDLR_classB_rpt,pfscan_LDLR_classB_rpt	pfam_G2_nidogen/fibulin_G2F,pfam_LDLR_classB_rpt,pfam_Nidogen_extracell_dom,pfam_Thyroglobulin_1,pfam_EGF-like_Ca-bd_dom,superfamily_GFP,superfamily_Thyroglobulin_1,smart_Nidogen_extracell_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_G2_nidogen/fibulin_G2F,smart_Thyroglobulin_1,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDLR_classB_rpt,pfscan_G2_nidogen/fibulin_G2F,pfscan_Thyroglobulin_1	-	no_errors	NID1	HGNC	ENSG00000116962				86	0	0	38	19	33.3333
NID1	0	genome.wustl.edu	37	1	236201424	236201424	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	236201424	236201424	C	T	SNP	NID1	ENST00000264187	human	ensembl	74_37	-1	known	missense	c.1265	p.G422D	1.000	smart_EGF-like_Ca-bd_dom,smart_EG-like_dom	pfam_G2_nidogen/fibulin_G2F,pfam_LDLR_classB_rpt,pfam_Nidogen_extracell_dom,pfam_Thyroglobulin_1,pfam_EGF-like_Ca-bd_dom,superfamily_GFP,superfamily_Thyroglobulin_1,smart_Nidogen_extracell_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_G2_nidogen/fibulin_G2F,smart_Thyroglobulin_1,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDLR_classB_rpt,pfscan_G2_nidogen/fibulin_G2F,pfscan_Thyroglobulin_1	-	no_errors	NID1	HGNC	ENSG00000116962				202	0	0	80	42	34.4262
HEATR1	0	genome.wustl.edu	37	1	236735796	236735796	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	236735796	236735796	T	C	SNP	HEATR1	ENST00000366582	human	ensembl	74_37	-1	known	missense	c.3622	p.T1208A	1.000	superfamily_ARM-type_fold	pfam_BP28_C_dom,pfam_U3snoRNP10,superfamily_ARM-type_fold	-	no_errors	HEATR1	HGNC	ENSG00000119285				121	0	0	62	18	22.5
MTR	0	genome.wustl.edu	37	1	236966835	236966835	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	236966835	236966835	G	A	SNP	MTR	ENST00000366577	human	ensembl	74_37	+1	known	missense	c.142	p.E48K	1.000	pfam_S_MeTrfase,superfamily_S_MeTrfase,pirsf_MetH,pfscan_S_MeTrfase,tigrfam_MetH	pfam_S_MeTrfase,pfam_VitB12-dep_Met_synth_activ_dom,pfam_Pterin-binding,pfam_Cbl-bd_cap,pfam_Cobalamin-bd,superfamily_VitB12-dep_Met_synth_activ_dom,superfamily_S_MeTrfase,superfamily_Dihydropteroate_synth-like,superfamily_Cobalamin-bd,superfamily_Cbl-bd_cap,pirsf_MetH,pfscan_VitB12-dep_Met_synth_activ_dom,pfscan_S_MeTrfase,pfscan_Pterin-binding,tigrfam_MetH	-	no_errors	MTR	HGNC	ENSG00000116984				154	0	0	78	30	27.7778
MTR	0	genome.wustl.edu	37	1	237054567	237054567	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	237054567	237054567	G	A	SNP	MTR	ENST00000366577	human	ensembl	74_37	+1	known	missense	c.3142	p.A1048T	0.013	superfamily_VitB12-dep_Met_synth_activ_dom,pirsf_MetH,pfscan_VitB12-dep_Met_synth_activ_dom,tigrfam_MetH	pfam_S_MeTrfase,pfam_VitB12-dep_Met_synth_activ_dom,pfam_Pterin-binding,pfam_Cbl-bd_cap,pfam_Cobalamin-bd,superfamily_VitB12-dep_Met_synth_activ_dom,superfamily_S_MeTrfase,superfamily_Dihydropteroate_synth-like,superfamily_Cobalamin-bd,superfamily_Cbl-bd_cap,pirsf_MetH,pfscan_VitB12-dep_Met_synth_activ_dom,pfscan_S_MeTrfase,pfscan_Pterin-binding,tigrfam_MetH	-	no_errors	MTR	HGNC	ENSG00000116984				243	0	0	179	21	10.5
RYR2	0	genome.wustl.edu	37	1	237955558	237955558	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	237955558	237955558	C	T	SNP	RYR2	ENST00000360064	human	ensembl	74_37	+1	known	missense	c.13735	p.R4579C	0.989	pfam_Ryanrecept_TM4-6	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ConA-like_lec_gl_sf,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_hand_dom,pfscan_MIR_motif	-	no_errors	RYR2	HGNC	ENSG00000198626				46	0	0	29	10	25.641
ZP4	0	genome.wustl.edu	37	1	238045775	238045775	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	238045775	238045775	A	G	SNP	ZP4	ENST00000366570	human	ensembl	74_37	-1	known	missense	c.1570	p.S524P	0.369	NULL	pfam_ZP_dom,pfam_P_trefoil,superfamily_P_trefoil,smart_P_trefoil,smart_ZP_dom,pfscan_ZP_dom,prints_ZP_dom	-	no_errors	ZP4	HGNC	ENSG00000116996				261	0	0	181	14	7.17949
LOC100130331	0	genome.wustl.edu	37	1	238090196	238090196	+	RNA	SNP	T	T	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	238090196	238090196	T	A	SNP	LOC100130331	ENST00000450451	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.990	-	-	-	no_errors	RP11-193H5.1	Clone_based_vega_gene	ENSG00000237250				24	0	0	4	3	42.8571
PITHD1	0	genome.wustl.edu	37	1	24113776	24113776	+	Silent	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	24113776	24113776	C	T	SNP	PITHD1	ENST00000246151	human	ensembl	74_37	+1	known	silent	c.546	p.H182	0.999	NULL	pfam_PITH_dom,superfamily_Galactose-bd-like	-	no_errors	PITHD1	HGNC	ENSG00000057757				96	0	0	38	15	28.3019
EXO1	0	genome.wustl.edu	37	1	242020786	242020786	+	Splice_Site	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	242020786	242020786	T	C	SNP	EXO1	ENST00000348581	human	ensembl	74_37	+1	known	splice_site	c.543+2	e4+2	1.000	-	-	-	no_errors	EXO1	HGNC	ENSG00000174371				128	0	0	55	33	37.5
MYOM3	0	genome.wustl.edu	37	1	24421461	24421461	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	24421461	24421461	G	A	SNP	MYOM3	ENST00000330966	human	ensembl	74_37	-1	known	silent	c.813	p.S271	0.002	pfscan_Ig-like_dom	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	MYOM3	HGNC	ENSG00000142661				56	0	0	25	14	35.8974
HNRNPU	0	genome.wustl.edu	37	1	245021316	245021316	+	Silent	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	245021316	245021316	A	G	SNP	HNRNPU	ENST00000283179	human	ensembl	74_37	-1	known	silent	c.1491	p.C497	1.000	pfam_Zeta_toxin_domain,superfamily_P-loop_NTPase	pfam_SPRY_rcpt,pfam_SAP_dom,pfam_Zeta_toxin_domain,superfamily_ConA-like_lec_gl_sf,superfamily_P-loop_NTPase,smart_SAP_dom,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_SAP_dom	-	no_errors	HNRNPU	HGNC	ENSG00000153187				79	0	0	60	8	11.7647
GRHL3	0	genome.wustl.edu	37	1	24664485	24664485	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	24664485	24664485	G	A	SNP	GRHL3	ENST00000350501	human	ensembl	74_37	+1	known	missense	c.844	p.V282M	1.000	pfam_CP2	pfam_CP2,superfamily_C2_dom	-	no_errors	GRHL3	HGNC	ENSG00000158055				159	0	0	69	22	24.1758
AHCTF1	0	genome.wustl.edu	37	1	247012967	247012967	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	247012967	247012967	T	C	SNP	AHCTF1	ENST00000326225	human	ensembl	74_37	-1	known	missense	c.6368	p.N2123S	0.020	NULL	superfamily_Quinonprotein_ADH-like_supfam	-	no_errors	AHCTF1	HGNC	ENSG00000153207				218	0	0	118	53	30.9942
NLRP3	0	genome.wustl.edu	37	1	247599444	247599444	+	Splice_Site	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	247599444	247599444	T	C	SNP	NLRP3	ENST00000336119	human	ensembl	74_37	+1	known	splice_site	c.2669+2	e6+2	1.000	-	-	-	no_errors	NLRP3	HGNC	ENSG00000162711				67	0	0	38	16	29.6296
OR2W5	0	genome.wustl.edu	37	1	247655201	247655201	+	RNA	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	247655201	247655201	C	T	SNP	OR2W5	ENST00000522351	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.469	-	-	-	no_errors	OR2W5	HGNC	ENSG00000203664				249	0	0	119	65	35.3261
OR2T33	0	genome.wustl.edu	37	1	248436525	248436525	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	248436525	248436525	A	G	SNP	OR2T33	ENST00000318021	human	ensembl	74_37	-1	known	missense	c.592	p.Y198H	0.013	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2T33	HGNC	ENSG00000177212				68	0	0	41	8	16.3265
OR2G6	0	genome.wustl.edu	37	1	248685831	248685831	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	248685831	248685831	A	G	SNP	OR2G6	ENST00000343414	human	ensembl	74_37	+1	known	missense	c.884	p.K295R	1.000	prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2G6	HGNC	ENSG00000188558				134	0	0	65	23	26.1364
MAN1C1	0	genome.wustl.edu	37	1	26013011	26013011	+	Silent	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	26013011	26013011	C	T	SNP	MAN1C1	ENST00000374332	human	ensembl	74_37	+1	known	silent	c.621	p.Y207	1.000	pfam_Glyco_hydro_47,superfamily_Glyco_hydro_47	pfam_Glyco_hydro_47,superfamily_Glyco_hydro_47,prints_Glyco_hydro_47	-	no_errors	MAN1C1	HGNC	ENSG00000117643				232	0	0	113	39	25.6579
AUNIP	0	genome.wustl.edu	37	1	26164013	26164013	+	Silent	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	26164013	26164013	T	C	SNP	AUNIP	ENST00000538789	human	ensembl	74_37	-1	known	silent	c.111	p.L37	0.940	NULL	NULL	-	no_errors	AUNIP	HGNC	ENSG00000127423				170	0	0	130	7	5.10949
ARID1A	0	genome.wustl.edu	37	1	27087503	27087503	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	27087503	27087503	C	T	SNP	ARID1A	ENST00000324856	human	ensembl	74_37	+1	known	nonsense	c.2077	p.R693*	1.000	NULL	pfam_DUF3518,pfam_ARID/BRIGHT_DNA-bd,superfamily_ARID/BRIGHT_DNA-bd,superfamily_ARM-type_fold,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID1A	HGNC	ENSG00000117713				152	0	0	72	25	25.7732
PIGV	0	genome.wustl.edu	37	1	27121133	27121133	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	27121133	27121133	G	A	SNP	PIGV	ENST00000078527	human	ensembl	74_37	+1	known	missense	c.608	p.R203H	1.000	pfam_GPI_Mannosyltransferase_2	pfam_GPI_Mannosyltransferase_2	-	no_errors	PIGV	HGNC	ENSG00000060642				143	1	0.694444	83	32	27.8261
GPR3	0	genome.wustl.edu	37	1	27721144	27721144	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	27721144	27721144	T	C	SNP	GPR3	ENST00000374024	human	ensembl	74_37	+1	known	missense	c.842	p.L281P	1.000	pfam_GPCR_Rhodpsn,prints_GPR_3/6/12_orphan,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,prints_GPR_3/6/12_orphan,prints_GPR3,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	GPR3	HGNC	ENSG00000181773				279	0	0	197	12	5.74163
AHDC1	0	genome.wustl.edu	37	1	27875576	27875576	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	27875576	27875576	G	A	SNP	AHDC1	ENST00000247087	human	ensembl	74_37	-1	known	silent	c.3051	p.S1017	0.739	NULL	NULL	-	no_errors	AHDC1	HGNC	ENSG00000126705				63	0	0	25	16	39.0244
GMEB1	0	genome.wustl.edu	37	1	29016643	29016643	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	29016643	29016643	C	A	SNP	GMEB1	ENST00000294409	human	ensembl	74_37	+1	known	missense	c.186	p.N62K	0.978	NULL	pfam_SAND_dom,superfamily_SAND_dom-like,smart_SAND_dom,pfscan_SAND_dom	-	no_errors	GMEB1	HGNC	ENSG00000162419				94	0	0	53	20	27.3973
EPB41	0	genome.wustl.edu	37	1	29342242	29342242	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	29342242	29342242	C	T	SNP	EPB41	ENST00000343067	human	ensembl	74_37	+1	known	missense	c.868	p.P290S	1.000	pirsf_Band_41_protein,pfam_FERM_N,smart_Band_41_domain,prints_Ez/rad/moesin_like,pfscan_FERM_domain	pirsf_Band_41_protein,pfam_Band_4.1_C,pfam_SAB_dom,pfam_FERM_PH-like_C,pfam_FERM_N,pfam_FERM_central,pfam_FERM-adjacent,superfamily_FERM_central,smart_Band_41_domain,prints_Band_41_fam,prints_Ez/rad/moesin_like,pfscan_FERM_domain	-	no_errors	EPB41	HGNC	ENSG00000159023				78	0	0	51	6	10.5263
MATN1	0	genome.wustl.edu	37	1	31189044	31189044	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	31189044	31189044	C	T	SNP	MATN1	ENST00000373765	human	ensembl	74_37	-1	known	missense	c.919	p.V307M	1.000	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_VWF_A,pfam_Matrilin_coiled-coil_trimer,pfam_EGF-like_Ca-bd_dom,smart_VWF_A,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_VWF_A	-	no_errors	MATN1	HGNC	ENSG00000162510				141	0	0	81	43	34.6774
MATN1	0	genome.wustl.edu	37	1	31194406	31194406	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	31194406	31194406	C	T	SNP	MATN1	ENST00000373765	human	ensembl	74_37	-1	known	missense	c.287	p.R96Q	1.000	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_VWF_A,pfam_Matrilin_coiled-coil_trimer,pfam_EGF-like_Ca-bd_dom,smart_VWF_A,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_VWF_A	-	no_errors	MATN1	HGNC	ENSG00000162510				275	0	0	149	50	25.1256
SDC3	0	genome.wustl.edu	37	1	31349583	31349583	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	31349583	31349583	G	A	SNP	SDC3	ENST00000339394	human	ensembl	74_37	-1	known	missense	c.686	p.A229V	0.000	pfam_Syndecan/Neurexin_dom	pfam_Syndecan/Neurexin_dom,smart_Neurexin-like	-	no_errors	SDC3	HGNC	ENSG00000162512				60	0	0	26	10	27.7778
SDC3	0	genome.wustl.edu	37	1	31350023	31350023	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	31350023	31350023	G	A	SNP	SDC3	ENST00000336798	human	ensembl	74_37	-1	known	silent	c.72	p.P24	0.000	NULL	pfam_Syndecan/Neurexin_dom,smart_Neurexin-like	-	no_errors	SDC3	HGNC	ENSG00000162512				43	0	0	34	10	22.7273
SNRNP40	0	genome.wustl.edu	37	1	31769597	31769597	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	31769597	31769597	A	G	SNP	SNRNP40	ENST00000446633	human	ensembl	74_37	-1	known	missense	c.2	p.M1T	1.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	SNRNP40	HGNC	ENSG00000060688				122	0	0	58	24	29.2683
ZCCHC17	0	genome.wustl.edu	37	1	31821730	31821730	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	31821730	31821730	T	A	SNP	ZCCHC17	ENST00000422613	human	ensembl	74_37	+1	known	missense	c.479	p.I160K	1.000	NULL	pfam_Rbsml_prot_S1_RNA-bd_dom,superfamily_NA-bd_OB-fold,smart_RNA-binding_domain_S1,pfscan_Rbsml_prot_S1_RNA-bd_dom	-	no_errors	ZCCHC17	HGNC	ENSG00000121766				208	0	0	162	9	5.26316
HCRTR1	0	genome.wustl.edu	37	1	32087173	32087173	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	32087173	32087173	C	T	SNP	HCRTR1	ENST00000373706	human	ensembl	74_37	+1	known	missense	c.718	p.R240C	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Orexin_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Orexin_rcpt,prints_GPCR_Rhodpsn,prints_Orexin_rcpt_1,prints_NPY_rcpt	-	no_errors	HCRTR1	HGNC	ENSG00000121764				269	0	0	174	52	23.0088
COL16A1	0	genome.wustl.edu	37	1	32131193	32131193	+	Silent	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	32131193	32131193	C	T	SNP	COL16A1	ENST00000271069	human	ensembl	74_37	-1	known	silent	c.3483	p.P1161	0.252	pfam_Collagen	pfam_Collagen,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G	-	no_errors	COL16A1	HGNC	ENSG00000084636				173	0	0	82	29	26.1261
KHDRBS1	0	genome.wustl.edu	37	1	32502514	32502514	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	32502514	32502514	A	G	SNP	KHDRBS1	ENST00000327300	human	ensembl	74_37	+1	known	missense	c.775	p.M259V	1.000	NULL	pfam_KH_dom_type_1,smart_KH_dom,pfscan_KH_dom_type_1	-	no_errors	KHDRBS1	HGNC	ENSG00000121774				320	0	0	237	26	9.88593
ZBTB8A	0	genome.wustl.edu	37	1	33060697	33060697	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	33060697	33060697	A	C	SNP	ZBTB8A	ENST00000373510	human	ensembl	74_37	+1	known	missense	c.866	p.H289P	0.998	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_BTB_POZ,pfam_Znf_C2H2,pfam_DUF3342,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB8A	HGNC	ENSG00000160062				115	0	0	61	35	36.4583
YARS	0	genome.wustl.edu	37	1	33245249	33245249	+	RNA	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	33245249	33245249	G	A	SNP	YARS	ENST00000490826	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.051	-	-	-	no_errors	YARS	HGNC	ENSG00000134684				23	0	0	12	5	29.4118
TMEM54	0	genome.wustl.edu	37	1	33363782	33363782	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	33363782	33363782	G	A	SNP	TMEM54	ENST00000373463	human	ensembl	74_37	-1	known	missense	c.155	p.A52V	0.997	pfam_Beta-casein-like	pfam_Beta-casein-like	-	no_errors	TMEM54	HGNC	ENSG00000121900				120	0	0	53	33	38.3721
TRIM62	0	genome.wustl.edu	37	1	33612784	33612784	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	33612784	33612784	G	A	SNP	TRIM62	ENST00000291416	human	ensembl	74_37	-1	known	silent	c.1422	p.R474	0.995	superfamily_ConA-like_lec_gl_sf,pfscan_B30.2/SPRY	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl_sf,smart_Znf_RING,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	TRIM62	HGNC	ENSG00000116525				137	1	0.724638	64	45	41.2844
PHC2	0	genome.wustl.edu	37	1	33836082	33836082	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	33836082	33836082	G	A	SNP	PHC2	ENST00000419414	human	ensembl	74_37	-1	known	silent	c.516	p.G172	1.000	NULL	pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM,pfscan_SAM,pfscan_Znf_FCS	-	no_errors	PHC2	HGNC	ENSG00000134686				105	0	0	51	25	32.8947
CSMD2	0	genome.wustl.edu	37	1	34401359	34401359	+	Splice_Site	SNP	A	A	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	34401359	34401359	A	T	SNP	CSMD2	ENST00000373381	human	ensembl	74_37	-1	known	splice_site	c.712+2	e4+2	1.000	-	-	-	no_errors	CSMD2	HGNC	ENSG00000121904				72	0	0	48	7	12.7273
GJA4	0	genome.wustl.edu	37	1	35260745	35260745	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	35260745	35260745	C	T	SNP	GJA4	ENST00000342280	human	ensembl	74_37	+1	known	missense	c.931	p.P311S	0.027	NULL	pfam_Connexin_N,pfam_Connexin_CCC,smart_Connexin_N,prints_Connexin,prints_Connexin37	-	no_errors	GJA4	HGNC	ENSG00000187513				55	0	0	26	3	10.3448
WRAP73	0	genome.wustl.edu	37	1	3564057	3564057	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	3564057	3564057	G	A	SNP	WRAP73	ENST00000270708	human	ensembl	74_37	-1	known	missense	c.137	p.T46M	0.997	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat	-	no_errors	WRAP73	HGNC	ENSG00000116213				78	0	0	54	6	10
KIAA0319L	0	genome.wustl.edu	37	1	35916003	35916003	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	35916003	35916003	C	T	SNP	KIAA0319L	ENST00000325722	human	ensembl	74_37	-1	known	missense	c.2170	p.V724I	0.968	pfam_PKD/REJ-like,superfamily_PKD_dom,smart_PKD/Chitinase_dom	pfam_PKD/REJ-like,superfamily_PKD_dom,smart_PKD/Chitinase_dom,pfscan_MANSC,pfscan_PKD_dom	-	no_errors	KIAA0319L	HGNC	ENSG00000142687				208	0	0	111	38	25.5034
AGO1	0	genome.wustl.edu	37	1	36379873	36379873	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	36379873	36379873	G	A	SNP	AGO1	ENST00000373204	human	ensembl	74_37	+1	known	missense	c.1831	p.A611T	1.000	pfam_Piwi,superfamily_RNaseH-like_dom,smart_Piwi,pfscan_Piwi	pfam_Piwi,pfam_PAZ_dom,pfam_DUF1785,superfamily_RNaseH-like_dom,superfamily_PAZ_dom,smart_PAZ_dom,smart_Piwi,pfscan_PAZ_dom,pfscan_Piwi	-	no_errors	AGO1	HGNC	ENSG00000092847				115	0	0	58	24	29.2683
AGO1	0	genome.wustl.edu	37	1	36383300	36383300	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	36383300	36383300	G	A	SNP	AGO1	ENST00000373204	human	ensembl	74_37	+1	known	missense	c.2135	p.R712H	1.000	pfam_Piwi,superfamily_RNaseH-like_dom,smart_Piwi,pfscan_Piwi	pfam_Piwi,pfam_PAZ_dom,pfam_DUF1785,superfamily_RNaseH-like_dom,superfamily_PAZ_dom,smart_PAZ_dom,smart_Piwi,pfscan_PAZ_dom,pfscan_Piwi	-	no_errors	AGO1	HGNC	ENSG00000092847				328	1	0.303951	207	48	18.8235
COL8A2	0	genome.wustl.edu	37	1	36564002	36564002	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	36564002	36564002	C	T	SNP	COL8A2	ENST00000303143	human	ensembl	74_37	-1	known	missense	c.1280	p.G427D	1.000	NULL	pfam_Collagen,pfam_C1q,superfamily_Tumour_necrosis_fac-like_dom,smart_C1q,pfscan_C1q,prints_C1q	-	no_errors	COL8A2	HGNC	ENSG00000171812				12	0	0	8	3	27.2727
SH3D21	0	genome.wustl.edu	37	1	36786335	36786335	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	36786335	36786335	A	T	SNP	SH3D21	ENST00000453908	human	ensembl	74_37	+1	known	missense	c.2071	p.T691S	0.000	NULL	pfam_SH3_2,pfam_SH3_domain,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain,prints_SH3_domain,prints_p67phox,prints_Spectrin_alpha_SH3	-	no_errors	SH3D21	HGNC	ENSG00000214193				39	0	0	18	3	14.2857
LRRC47	0	genome.wustl.edu	37	1	3697778	3697778	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	3697778	3697778	C	A	SNP	LRRC47	ENST00000378251	human	ensembl	74_37	-1	known	missense	c.1626	p.K542N	0.000	NULL	pfam_Leu-rich_rpt,pfam_B3/B4_tRNA-bd,smart_Leu-rich_rpt_typical-subtyp,smart_B3/B4_tRNA-bd	-	no_errors	LRRC47	HGNC	ENSG00000130764				159	0	0	98	35	26.3158
CEP104	0	genome.wustl.edu	37	1	3768907	3768907	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	3768907	3768907	C	T	SNP	CEP104	ENST00000378230	human	ensembl	74_37	-1	known	missense	c.65	p.R22Q	0.782	superfamily_Galactose-bd-like	superfamily_Galactose-bd-like,superfamily_ARM-type_fold	-	no_errors	CEP104	HGNC	ENSG00000116198				75	0	0	41	11	21.1538
MEAF6	0	genome.wustl.edu	37	1	37967295	37967295	+	RNA	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	37967295	37967295	C	T	SNP	MEAF6	ENST00000485039	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	MEAF6	HGNC	ENSG00000163875				116	0	0	71	29	29
SNIP1	0	genome.wustl.edu	37	1	38006327	38006327	+	Silent	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	38006327	38006327	C	T	SNP	SNIP1	ENST00000296215	human	ensembl	74_37	-1	known	silent	c.357	p.R119	0.037	NULL	pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_FHA_dom,pfscan_FHA_dom	-	no_errors	SNIP1	HGNC	ENSG00000163877				206	0	0	85	47	35.6061
DNALI1	0	genome.wustl.edu	37	1	38027281	38027281	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	38027281	38027281	T	C	SNP	DNALI1	ENST00000296218	human	ensembl	74_37	+1	known	missense	c.587	p.F196S	0.998	pfam_Axonemal_dynein_light_chain	pfam_Axonemal_dynein_light_chain	-	no_errors	DNALI1	HGNC	ENSG00000163879				66	0	0	36	11	23.4043
EPHA10	0	genome.wustl.edu	37	1	38185714	38185714	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	38185714	38185714	G	A	SNP	EPHA10	ENST00000427468	human	ensembl	74_37	-1	known	missense	c.2429	p.A810V	0.758	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_SAM/pointed,superfamily_Fibronectin_type3,superfamily_Growth_fac_rcpt_N_dom,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_dom	-	no_errors	EPHA10	HGNC	ENSG00000183317				69	0	0	29	8	21.6216
SF3A3	0	genome.wustl.edu	37	1	38453481	38453481	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	38453481	38453481	T	C	SNP	SF3A3	ENST00000373019	human	ensembl	74_37	-1	known	missense	c.172	p.R58G	1.000	NULL	pfam_DUF3449,pfam_SF3a60_bindingd,pfscan_Znf_C2H2_matrin	-	no_errors	SF3A3	HGNC	ENSG00000183431				245	0	0	123	60	32.7869
MACF1	0	genome.wustl.edu	37	1	39549962	39549962	+	Silent	SNP	A	A	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	39549962	39549962	A	T	SNP	MACF1	ENST00000317713	human	ensembl	74_37	+1	known	silent	c.72	p.R24	0.809	NULL	pfam_Spectrin_repeat,pfam_CH-domain,pfam_GAS2_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_GAS2_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_EF_hand_dom,smart_GAS2_dom,pfscan_CH-domain,pfscan_EF_hand_dom	-	no_errors	MACF1	HGNC	ENSG00000127603				99	0	0	58	18	23.6842
MACF1	0	genome.wustl.edu	37	1	39750009	39750009	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	39750009	39750009	T	C	SNP	MACF1	ENST00000317713	human	ensembl	74_37	+1	known	missense	c.1055	p.L352P	1.000	NULL	pfam_Spectrin_repeat,pfam_CH-domain,pfam_GAS2_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_GAS2_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_EF_hand_dom,smart_GAS2_dom,pfscan_CH-domain,pfscan_EF_hand_dom	-	no_errors	MACF1	HGNC	ENSG00000127603				93	0	0	54	9	14.2857
MACF1	0	genome.wustl.edu	37	1	39853184	39853184	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	39853184	39853184	A	C	SNP	MACF1	ENST00000317713	human	ensembl	74_37	+1	known	missense	c.8484	p.K2828N	1.000	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_CH-domain,pfam_GAS2_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_GAS2_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_EF_hand_dom,smart_GAS2_dom,pfscan_CH-domain,pfscan_EF_hand_dom	-	no_errors	MACF1	HGNC	ENSG00000127603				197	0	0	107	50	31.8471
HPCAL4	0	genome.wustl.edu	37	1	40149793	40149793	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	40149793	40149793	G	A	SNP	HPCAL4	ENST00000372844	human	ensembl	74_37	-1	known	missense	c.194	p.A65V	1.000	smart_EF_hand_dom,pfscan_EF_hand_dom	pfam_EF_hand_dom,smart_EF_hand_dom,pfscan_EF_hand_dom,prints_Recoverin	-	no_errors	HPCAL4	HGNC	ENSG00000116983				63	0	0	27	15	35.7143
OXCT2	0	genome.wustl.edu	37	1	40235971	40235971	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	40235971	40235971	G	A	SNP	OXCT2	ENST00000327582	human	ensembl	74_37	-1	known	silent	c.957	p.G319	1.000	pfam_CoA_trans_fam_I,smart_CoA_trans_fam_I,pirsf_3-oxoacid_CoA-transferase,tigrfam_3-oxoacid_CoA-transf_B	pfam_CoA_trans_fam_I,smart_CoA_trans_fam_I,pirsf_3-oxoacid_CoA-transferase,tigrfam_3-oxoacid_CoA-transf_B,tigrfam_3-oxoacid_CoA-transf_A	-	no_errors	OXCT2	HGNC	ENSG00000198754				110	0	0	42	12	22.2222
PPT1	0	genome.wustl.edu	37	1	40546147	40546147	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	40546147	40546147	G	A	SNP	PPT1	ENST00000433473	human	ensembl	74_37	-1	known	silent	c.549	p.A183	0.892	pfam_Palm_thioest	pfam_Palm_thioest,prints_Palm_thioest	-	no_errors	PPT1	HGNC	ENSG00000131238				500	1	0.199601	271	119	30.5128
EXO5	0	genome.wustl.edu	37	1	40981063	40981063	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	40981063	40981063	G	A	SNP	EXO5	ENST00000296380	human	ensembl	74_37	+1	known	missense	c.847	p.D283N	1.000	pfam_EXOV	pfam_EXOV	-	no_errors	EXO5	HGNC	ENSG00000164002				284	0	0	216	13	5.67686
SLC2A1	0	genome.wustl.edu	37	1	43393358	43393358	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	43393358	43393358	G	T	SNP	SLC2A1	ENST00000426263	human	ensembl	74_37	-1	known	missense	c.1196	p.P399Q	1.000	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,prints_Sugar/inositol_transpt,tigrfam_Sugar/inositol_transpt	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,prints_Sugar/inositol_transpt,prints_Glu_transpt_1,tigrfam_Sugar/inositol_transpt	-	no_errors	SLC2A1	HGNC	ENSG00000117394				80	0	0	34	14	29.1667
WDR65	0	genome.wustl.edu	37	1	43647224	43647224	+	Silent	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	43647224	43647224	C	T	SNP	WDR65	ENST00000528956	human	ensembl	74_37	+1	known	silent	c.177	p.G59	1.000	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_Quinonprotein_ADH-like_supfam,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR65	HGNC	ENSG00000243710				124	1	0.8	76	13	14.6067
SZT2	0	genome.wustl.edu	37	1	43887819	43887819	+	Silent	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	43887819	43887819	A	G	SNP	SZT2	ENST00000562955	human	ensembl	74_37	+1	known	silent	c.1692	p.P564	0.903	NULL	NULL	-	no_errors	SZT2	HGNC	ENSG00000198198				41	0	0	28	5	15.1515
SZT2	0	genome.wustl.edu	37	1	43906258	43906258	+	Splice_Site	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	43906258	43906258	G	A	SNP	SZT2	ENST00000562955	human	ensembl	74_37	+1	known	splice_site	c.7173+1	e51+1	1.000	-	-	-	no_errors	SZT2	HGNC	ENSG00000198198				113	0	0	73	29	28.4314
PTPRF	0	genome.wustl.edu	37	1	44054460	44054460	+	Silent	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	44054460	44054460	C	T	SNP	PTPRF	ENST00000359947	human	ensembl	74_37	+1	known	silent	c.738	p.G246	0.878	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Fibronectin_type3,pfam_Ig_I-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like_dom,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRF	HGNC	ENSG00000142949				58	0	0	26	17	39.5349
SNORD46	0	genome.wustl.edu	37	1	45242170	45242170	+	RNA	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	45242170	45242170	T	C	SNP	SNORD46	ENST00000364043	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	SNORD46	HGNC	ENSG00000200913				391	0	0	201	84	29.4737
RPS8	0	genome.wustl.edu	37	1	45244276	45244276	+	Silent	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	45244276	45244276	T	C	SNP	RPS8	ENST00000396651	human	ensembl	74_37	+1	known	silent	c.546	p.C182	0.999	pfam_Ribosomal_S8e/biogenesis_NSA2,tigrfam_Ribosomal_S8e	pfam_Ribosomal_S8e/biogenesis_NSA2,tigrfam_Ribosomal_S8e	-	no_errors	RPS8	HGNC	ENSG00000142937				90	0	0	41	17	29.3103
PLK3	0	genome.wustl.edu	37	1	45271337	45271337	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	45271337	45271337	G	A	SNP	PLK3	ENST00000372201	human	ensembl	74_37	+1	known	missense	c.1928	p.R643H	0.933	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_POLO_box_duplicated_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_POLO_box_duplicated_dom,pfscan_Prot_kinase_dom	-	no_errors	PLK3	HGNC	ENSG00000173846				144	0	0	99	7	6.60377
EIF2B3	0	genome.wustl.edu	37	1	45345614	45345614	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	45345614	45345614	G	A	SNP	EIF2B3	ENST00000360403	human	ensembl	74_37	-1	known	missense	c.851	p.A284V	1.000	NULL	pfam_NTP_transferase	-	no_errors	EIF2B3	HGNC	ENSG00000070785				128	0	0	44	36	45
HECTD3	0	genome.wustl.edu	37	1	45472378	45472378	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	45472378	45472378	G	A	SNP	HECTD3	ENST00000372172	human	ensembl	74_37	-1	known	missense	c.1711	p.R571C	1.000	superfamily_HECT,smart_HECT,pfscan_HECT	pfam_HECT,pfam_APC_su10/DOC_dom,superfamily_HECT,superfamily_Galactose-bd-like,smart_HECT,pfscan_HECT	-	no_errors	HECTD3	HGNC	ENSG00000126107				151	0	0	76	27	26.2136
TOE1	0	genome.wustl.edu	37	1	45808127	45808127	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	45808127	45808127	G	A	SNP	TOE1	ENST00000372090	human	ensembl	74_37	+1	known	silent	c.564	p.V188	0.938	pfam_RNase_CAF1,superfamily_RNaseH-like_dom	pfam_RNase_CAF1,pfam_Znf_CCCH,superfamily_RNaseH-like_dom	-	no_errors	TOE1	HGNC	ENSG00000132773				282	0	0	149	58	28.0193
MAST2	0	genome.wustl.edu	37	1	46489481	46489481	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	46489481	46489481	C	T	SNP	MAST2	ENST00000361297	human	ensembl	74_37	+1	known	missense	c.1609	p.R537C	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_MA_Ser/Thr_Kinase_dom,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_PDZ,superfamily_Kinase-like_dom,superfamily_MAST_pre-PK_dom,superfamily_PDZ,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_PDZ,pfscan_PDZ,pfscan_Prot_kinase_dom	-	no_errors	MAST2	HGNC	ENSG00000086015				67	0	0	23	17	42.5
POMGNT1	0	genome.wustl.edu	37	1	46659443	46659443	+	RNA	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	46659443	46659443	G	A	SNP	POMGNT1	ENST00000477114	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	POMGNT1	HGNC	ENSG00000085998				22	0	0	12	6	33.3333
EFCAB14	0	genome.wustl.edu	37	1	47155282	47155282	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	47155282	47155282	T	C	SNP	EFCAB14	ENST00000371933	human	ensembl	74_37	-1	known	missense	c.772	p.T258A	1.000	NULL	pfscan_EF_hand_dom	-	no_errors	EFCAB14	HGNC	ENSG00000159658				262	0	0	182	10	5.20833
AJAP1	0	genome.wustl.edu	37	1	4772104	4772104	+	Silent	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	4772104	4772104	C	T	SNP	AJAP1	ENST00000378190	human	ensembl	74_37	+1	known	silent	c.174	p.P58	0.088	NULL	NULL	-	no_errors	AJAP1	HGNC	ENSG00000196581				205	0	0	130	9	6.47482
SLC5A9	0	genome.wustl.edu	37	1	48701407	48701407	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	48701407	48701407	G	A	SNP	SLC5A9	ENST00000236495	human	ensembl	74_37	+1	known	missense	c.1223	p.R408Q	1.000	pfam_Na/solute_symporter,pfscan_Na/solute_symporter,tigrfam_Na/solute_symporter_subgr	pfam_Na/solute_symporter,pfscan_Na/solute_symporter,tigrfam_Na/solute_symporter_subgr	-	no_errors	SLC5A9	HGNC	ENSG00000117834				92	0	0	41	23	35.9375
FAF1	0	genome.wustl.edu	37	1	51425455	51425455	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	51425455	51425455	A	C	SNP	FAF1	ENST00000371778	human	ensembl	74_37	-1	known	missense	c.29	p.I10S	1.000	superfamily_UBA-like	pfam_UBX,superfamily_UBA-like,smart_UAS,smart_UBX,pfscan_UBX	-	no_errors	FAF1	HGNC	ENSG00000185104				193	0	0	81	27	25
RAB3B	0	genome.wustl.edu	37	1	52403029	52403029	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	52403029	52403029	G	A	SNP	RAB3B	ENST00000371655	human	ensembl	74_37	-1	known	missense	c.284	p.A95V	1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB3B	HGNC	ENSG00000169213				322	0	0	157	83	34.5833
PRPF38A	0	genome.wustl.edu	37	1	52870494	52870494	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	52870494	52870494	A	G	SNP	PRPF38A	ENST00000257181	human	ensembl	74_37	+1	known	missense	c.73	p.I25V	1.000	pfam_PRP38	pfam_PRP38	-	no_errors	PRPF38A	HGNC	ENSG00000134748				219	0	0	136	56	29.1667
ACOT11	0	genome.wustl.edu	37	1	55067074	55067074	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	55067074	55067074	G	A	SNP	ACOT11	ENST00000371316	human	ensembl	74_37	+1	known	silent	c.1017	p.R339	0.948	NULL	pfam_START_lipid-bd_dom,pfam_Thioestr_supf,smart_START_lipid-bd_dom,pfscan_START_lipid-bd_dom	-	no_errors	ACOT11	HGNC	ENSG00000162390				177	0	0	89	31	25.8333
FAM151A	0	genome.wustl.edu	37	1	55075118	55075118	+	Silent	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	55075118	55075118	C	T	SNP	FAM151A	ENST00000302250	human	ensembl	74_37	-1	known	silent	c.1581	p.R527	0.968	pfam_DUF2181	pfam_DUF2181	-	no_errors	FAM151A	HGNC	ENSG00000162391				165	1	0.60241	97	44	31.2057
TTC4	0	genome.wustl.edu	37	1	55182282	55182282	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	55182282	55182282	A	G	SNP	TTC4	ENST00000371281	human	ensembl	74_37	+1	known	missense	c.121	p.K41E	0.999	NULL	smart_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC4	HGNC	ENSG00000243725				164	0	0	116	9	7.2
PRKAA2	0	genome.wustl.edu	37	1	57169936	57169936	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	57169936	57169936	C	A	SNP	PRKAA2	ENST00000371244	human	ensembl	74_37	+1	known	missense	c.1081	p.P361T	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_KA1/Ssp2_C,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	PRKAA2	HGNC	ENSG00000162409				177	0	0	68	36	34.6154
MYSM1	0	genome.wustl.edu	37	1	59139300	59139300	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	59139300	59139300	C	T	SNP	MYSM1	ENST00000472487	human	ensembl	74_37	-1	known	missense	c.1517	p.R506Q	1.000	NULL	pfam_SWIRM,pfam_JAB_MPN_dom,pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,smart_JAB_MPN_dom,pfscan_SWIRM,pfscan_Myb-like_dom	-	no_errors	MYSM1	HGNC	ENSG00000162601				88	0	0	37	20	35.0877
NPHP4	0	genome.wustl.edu	37	1	5925274	5925274	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	5925274	5925274	C	T	SNP	NPHP4	ENST00000378156	human	ensembl	74_37	-1	known	missense	c.3704	p.R1235H	1.000	NULL	NULL	-	no_errors	NPHP4	HGNC	ENSG00000131697				16	0	0	9	3	25
HOOK1	0	genome.wustl.edu	37	1	60331559	60331559	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	60331559	60331559	A	G	SNP	HOOK1	ENST00000371208	human	ensembl	74_37	+1	known	missense	c.1760	p.E587G	1.000	pfam_Hook-related_fam	pfam_Hook-related_fam,superfamily_Prefoldin	-	no_errors	HOOK1	HGNC	ENSG00000134709				102	0	0	62	4	6.06061
INADL	0	genome.wustl.edu	37	1	62228824	62228824	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	62228824	62228824	G	A	SNP	INADL	ENST00000371158	human	ensembl	74_37	+1	known	silent	c.162	p.Q54	1.000	pfam_L27_2,smart_L27,pfscan_L27	pfam_PDZ,pfam_L27_2,superfamily_PDZ,smart_L27,smart_PDZ,pfscan_L27,pfscan_PDZ	-	no_errors	INADL	HGNC	ENSG00000132849				131	0	0	78	6	7.14286
KANK4	0	genome.wustl.edu	37	1	62728927	62728927	+	Silent	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	62728927	62728927	C	T	SNP	KANK4	ENST00000371153	human	ensembl	74_37	-1	known	silent	c.2376	p.S792	0.330	NULL	pfam_KN_motif,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	KANK4	HGNC	ENSG00000132854				45	0	0	22	8	26.6667
DOCK7	0	genome.wustl.edu	37	1	62979473	62979473	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	62979473	62979473	G	A	SNP	DOCK7	ENST00000251157	human	ensembl	74_37	-1	known	nonsense	c.4033	p.Q1345*	1.000	NULL	pfam_DOCK_C,pfam_DOCK_C/D_N,superfamily_ARM-type_fold	-	no_errors	DOCK7	HGNC	ENSG00000116641				307	0	0	150	61	28.91
ACOT7	0	genome.wustl.edu	37	1	6341163	6341163	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	6341163	6341163	A	G	SNP	ACOT7	ENST00000377855	human	ensembl	74_37	-1	known	missense	c.1043	p.V348A	0.990	NULL	pfam_Thioestr_supf	-	no_errors	ACOT7	HGNC	ENSG00000097021				39	0	0	29	6	17.1429
LEPR	0	genome.wustl.edu	37	1	66081718	66081718	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	66081718	66081718	A	T	SNP	LEPR	ENST00000349533	human	ensembl	74_37	+1	known	missense	c.2023	p.S675C	1.000	superfamily_Fibronectin_type3,smart_Fibronectin_type3	pfam_IgC2-like_lig-bd,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	LEPR	HGNC	ENSG00000116678				179	0	0	80	32	28.5714
MIER1	0	genome.wustl.edu	37	1	67437384	67437384	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	67437384	67437384	T	C	SNP	MIER1	ENST00000401041	human	ensembl	74_37	+1	known	missense	c.971	p.L324S	1.000	superfamily_Homeodomain-like,pfscan_ELM2_dom	pfam_ELM2_dom,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_ELM2_dom	-	no_errors	MIER1	HGNC	ENSG00000198160				131	0	0	66	18	21.4286
IL23R	0	genome.wustl.edu	37	1	67635241	67635241	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	67635241	67635241	A	G	SNP	IL23R	ENST00000347310	human	ensembl	74_37	+1	known	missense	c.287	p.H96R	0.000	NULL	superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	IL23R	HGNC	ENSG00000162594				243	0	0	125	55	30.5556
IL12RB2	0	genome.wustl.edu	37	1	67861635	67861635	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	67861635	67861635	T	A	SNP	IL12RB2	ENST00000262345	human	ensembl	74_37	+1	known	missense	c.2452	p.S818T	0.001	NULL	pfam_Fibronectin_type3,pfam_IgC2-like_lig-bd,pfam_IL-6_rcpt_alpha-bd,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	IL12RB2	HGNC	ENSG00000081985				713	0	0	380	190	33.3333
PIN1P1	0	genome.wustl.edu	37	1	70385516	70385516	+	RNA	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	70385516	70385516	C	T	SNP	PIN1P1	ENST00000412108	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.997	-	-	-	no_errors	PIN1P1	HGNC	ENSG00000229359				16	0	0	4	6	60
FPGT	0	genome.wustl.edu	37	1	74671452	74671452	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	74671452	74671452	A	G	SNP	FPGT	ENST00000370898	human	ensembl	74_37	+1	known	missense	c.1760	p.E587G	1.000	pirsf_Fucose-1-phosphate_GuaTrfase	pfam_Fucokinase,superfamily_Trimer_LpxA-like,pirsf_Fucose-1-phosphate_GuaTrfase	-	no_errors	FPGT	HGNC	ENSG00000254685				92	0	0	51	7	12.069
ENSG00000224149	0	genome.wustl.edu	37	1	75596507	75596507	+	RNA	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	75596507	75596507	T	C	SNP	ENSG00000224149	ENST00000427892	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.064	-	-	-	no_errors	RP11-510C10.3	Clone_based_vega_gene	ENSG00000224149				62	0	0	30	9	23.0769
RABGGTB	0	genome.wustl.edu	37	1	76251915	76251915	+	RNA	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	76251915	76251915	C	T	SNP	RABGGTB	ENST00000473406	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RABGGTB	HGNC	ENSG00000137955				129	0	0	40	23	36.5079
ZZZ3	0	genome.wustl.edu	37	1	78050227	78050227	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	78050227	78050227	C	T	SNP	ZZZ3	ENST00000370801	human	ensembl	74_37	-1	known	missense	c.1619	p.G540E	1.000	NULL	pfam_SANT/Myb,pfam_Znf_ZZ,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Znf_ZZ,pfscan_Myb-like_dom	-	no_errors	ZZZ3	HGNC	ENSG00000036549				167	0	0	119	7	5.55556
ZZZ3	0	genome.wustl.edu	37	1	78097960	78097960	+	Silent	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	78097960	78097960	A	G	SNP	ZZZ3	ENST00000370801	human	ensembl	74_37	-1	known	silent	c.1080	p.C360	0.998	NULL	pfam_SANT/Myb,pfam_Znf_ZZ,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Znf_ZZ,pfscan_Myb-like_dom	-	no_errors	ZZZ3	HGNC	ENSG00000036549				279	0	0	130	52	28.5714
SLC45A1	0	genome.wustl.edu	37	1	8384399	8384399	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	8384399	8384399	G	A	SNP	SLC45A1	ENST00000377479	human	ensembl	74_37	+1	known	missense	c.112	p.A38T	0.832	NULL	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	-	no_errors	SLC45A1	HGNC	ENSG00000162426				227	0	0	125	60	32.4324
WDR63	0	genome.wustl.edu	37	1	85563328	85563328	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	85563328	85563328	C	T	SNP	WDR63	ENST00000294664	human	ensembl	74_37	+1	known	missense	c.1340	p.A447V	0.000	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat	-	no_errors	WDR63	HGNC	ENSG00000162643				62	0	0	35	4	10.2564
COL24A1	0	genome.wustl.edu	37	1	86591704	86591704	+	Silent	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	86591704	86591704	C	T	SNP	COL24A1	ENST00000370571	human	ensembl	74_37	-1	known	silent	c.315	p.P105	0.753	superfamily_ConA-like_lec_gl_sf,smart_Laminin_G	pfam_Collagen,pfam_Fib_collagen_C,pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,smart_Fib_collagen_C	-	no_errors	COL24A1	HGNC	ENSG00000171502				128	0	0	76	27	26.2136
CLCA1	0	genome.wustl.edu	37	1	86947904	86947904	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	86947904	86947904	A	G	SNP	CLCA1	ENST00000234701	human	ensembl	74_37	+1	known	missense	c.574	p.T192A	0.003	pfam_Cl_channel_Ca,tigrfam_CaCC_prot	pfam_Cl_channel_Ca,pfam_DUF1973,pfam_VWF_A,superfamily_Fibronectin_type3,smart_VWF_A,pfscan_VWF_A,tigrfam_CaCC_prot	-	no_errors	CLCA1	HGNC	ENSG00000016490				62	0	0	30	23	43.3962
CLCA3P	0	genome.wustl.edu	37	1	87102526	87102526	+	RNA	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	87102526	87102526	A	G	SNP	CLCA3P	ENST00000284054	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.937	-	-	-	no_errors	CLCA3P	HGNC	ENSG00000153923				136	0	0	86	15	14.8515
GBP2	0	genome.wustl.edu	37	1	89582734	89582734	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	89582734	89582734	T	C	SNP	GBP2	ENST00000370466	human	ensembl	74_37	-1	known	missense	c.809	p.Y270C	0.987	pfam_Guanylate-bd_N,superfamily_P-loop_NTPase	pfam_Guanylate-bd_C,pfam_Guanylate-bd_N,superfamily_Guanylate-bd_C,superfamily_P-loop_NTPase	-	no_errors	GBP2	HGNC	ENSG00000162645				122	0	0	65	5	7.14286
KLHL17	0	genome.wustl.edu	37	1	898538	898538	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	898538	898538	G	A	SNP	KLHL17	ENST00000338591	human	ensembl	74_37	+1	known	silent	c.1092	p.T364	0.179	smart_Kelch_1,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BACK,pfam_BTB_POZ,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL17	HGNC	ENSG00000187961				39	0	0	17	9	34.6154
LRRC8B	0	genome.wustl.edu	37	1	90050223	90050223	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	90050223	90050223	C	A	SNP	LRRC8B	ENST00000330947	human	ensembl	74_37	+1	known	missense	c.2014	p.P672T	1.000	smart_Leu-rich_rpt_typical-subtyp	pfam_LRR_protein-8_N,pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC8B	HGNC	ENSG00000197147				261	0	0	150	18	10.7143
ZNF326	0	genome.wustl.edu	37	1	90478719	90478719	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	90478719	90478719	G	A	SNP	ZNF326	ENST00000340281	human	ensembl	74_37	+1	known	silent	c.849	p.K283	0.996	NULL	pfam_AKAP95	-	no_errors	ZNF326	HGNC	ENSG00000162664				51	0	0	32	7	17.9487
ZNF644	0	genome.wustl.edu	37	1	91405022	91405022	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	91405022	91405022	A	T	SNP	ZNF644	ENST00000337393	human	ensembl	74_37	-1	known	missense	c.1889	p.I630N	0.139	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF644	HGNC	ENSG00000122482				249	0	0	109	37	25.3425
ZNF644	0	genome.wustl.edu	37	1	91406587	91406587	+	Silent	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	91406587	91406587	A	G	SNP	ZNF644	ENST00000337393	human	ensembl	74_37	-1	known	silent	c.324	p.F108	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF644	HGNC	ENSG00000122482				146	0	0	81	11	11.9565
DNTTIP2	0	genome.wustl.edu	37	1	94335492	94335492	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	94335492	94335492	C	T	SNP	DNTTIP2	ENST00000436063	human	ensembl	74_37	-1	known	missense	c.2186	p.R729Q	1.000	pfam_Fcf2	pfam_Fcf2	-	no_errors	DNTTIP2	HGNC	ENSG00000067334				72	0	0	41	11	21.1538
RWDD3	0	genome.wustl.edu	37	1	95710198	95710198	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	95710198	95710198	A	G	SNP	RWDD3	ENST00000370202	human	ensembl	74_37	+1	known	missense	c.517	p.M173V	1.000	NULL	pfam_RWD-domain,superfamily_UBQ-conjugating_enzyme/RWD,smart_RWD-domain,pfscan_RWD-domain	-	no_errors	RWDD3	HGNC	ENSG00000122481				273	0	0	179	17	8.67347
PTBP2	0	genome.wustl.edu	37	1	97250594	97250594	+	RNA	SNP	A	A	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	97250594	97250594	A	T	SNP	PTBP2	ENST00000459735	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	PTBP2	HGNC	ENSG00000117569				112	0	0	76	25	24.7525
PIK3CD	0	genome.wustl.edu	37	1	9777080	9777080	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	9777080	9777080	A	G	SNP	PIK3CD	ENST00000377346	human	ensembl	74_37	+1	known	missense	c.844	p.I282V	1.000	NULL	pfam_PI3/4_kinase_cat_dom,pfam_PInositide-3_kin_accessory_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,pfam_PI3K_Ras-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_dom,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CD	HGNC	ENSG00000171608				206	0	0	166	20	10.7527
AGRN	0	genome.wustl.edu	37	1	978991	978991	+	Silent	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	978991	978991	C	T	SNP	AGRN	ENST00000379370	human	ensembl	74_37	+1	known	silent	c.1677	p.C559	0.992	pfam_Kazal_dom,smart_FacI_MAC,smart_Kazal_dom	pfam_Laminin_G,pfam_Agrin_NtA,pfam_Kazal_dom,pfam_EGF_laminin,pfam_SEA_dom,pfam_EG-like_dom,superfamily_TIMP-like_OB-fold,superfamily_ConA-like_lec_gl_sf,smart_FacI_MAC,smart_Fol_N,smart_Kazal_dom,smart_EG-like_dom,smart_EGF_laminin,smart_SEA_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Agrin_NtA,pfscan_SEA_dom	-	no_errors	AGRN	HGNC	ENSG00000188157				146	0	0	101	35	25.7353
LPPR5	0	genome.wustl.edu	37	1	99380342	99380342	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	99380342	99380342	C	A	SNP	LPPR5	ENST00000263177	human	ensembl	74_37	-1	known	missense	c.933	p.Q311H	1.000	NULL	pfam_P_Acid_Pase_2/haloperoxidase,superfamily_P_Acid_Pase_2/haloperoxidase,smart_P_Acid_Pase_2/haloperoxidase	-	no_errors	LPPR5	Uniprot_gn	ENSG00000117598				113	0	0	69	18	20.6897
LOC101927255	0	genome.wustl.edu	37	10	100015567	100015567	+	RNA	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	10	100015567	100015567	G	A	SNP	LOC101927255	ENST00000433374	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RP11-34A14.3	Clone_based_vega_gene	ENSG00000230928				37	0	0	25	6	19.3548
COX15	0	genome.wustl.edu	37	10	101487291	101487291	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	10	101487291	101487291	T	A	SNP	COX15	ENST00000016171	human	ensembl	74_37	-1	known	missense	c.302	p.D101V	1.000	pfam_HemeA_syn,superfamily_Trypsin-like_Pept_dom	pfam_HemeA_syn,superfamily_Trypsin-like_Pept_dom	-	no_errors	COX15	HGNC	ENSG00000014919				179	0	0	99	40	28.777
PAX2	0	genome.wustl.edu	37	10	102566235	102566235	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	10	102566235	102566235	A	G	SNP	PAX2	ENST00000370296	human	ensembl	74_37	+1	known	missense	c.734	p.D245G	1.000	NULL	pfam_Paired_dom,pfam_Pax2_C,superfamily_Homeodomain-like,smart_Paired_dom,pfscan_Paired_dom,prints_Paired_dom	-	no_errors	PAX2	HGNC	ENSG00000075891				461	0	0	342	18	5
FAM178A	0	genome.wustl.edu	37	10	102684471	102684471	+	Silent	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	10	102684471	102684471	A	G	SNP	FAM178A	ENST00000370269	human	ensembl	74_37	+1	known	silent	c.1713	p.A571	0.584	NULL	NULL	-	no_errors	FAM178A	HGNC	ENSG00000119906				191	0	0	105	42	28.5714
LZTS2	0	genome.wustl.edu	37	10	102762542	102762542	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	10	102762542	102762542	G	T	SNP	LZTS2	ENST00000370220	human	ensembl	74_37	+1	known	missense	c.247	p.V83F	0.019	NULL	NULL	-	no_errors	LZTS2	HGNC	ENSG00000107816				113	0	0	40	16	28.5714
SFXN3	0	genome.wustl.edu	37	10	102799358	102799358	+	RNA	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	10	102799358	102799358	G	A	SNP	SFXN3	ENST00000466982	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	SFXN3	HGNC	ENSG00000107819				129	0	0	66	24	26.6667
TLX1	0	genome.wustl.edu	37	10	102891794	102891794	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	10	102891794	102891794	G	A	SNP	TLX1	ENST00000370196	human	ensembl	74_37	+1	known	missense	c.496	p.V166I	0.998	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa	-	no_errors	TLX1	HGNC	ENSG00000107807				34	0	0	12	5	29.4118
C10orf76	0	genome.wustl.edu	37	10	103717427	103717427	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	10	103717427	103717427	T	A	SNP	C10orf76	ENST00000370033	human	ensembl	74_37	-1	known	missense	c.1558	p.I520F	1.000	pfam_DUF1741,superfamily_ARM-type_fold	pfam_DUF1741,superfamily_ARM-type_fold	-	no_errors	C10orf76	HGNC	ENSG00000120029				28	0	0	22	4	15.3846
PPRC1	0	genome.wustl.edu	37	10	103899979	103899979	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	10	103899979	103899979	A	G	SNP	PPRC1	ENST00000278070	human	ensembl	74_37	+1	known	missense	c.1714	p.T572A	0.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	PPRC1	HGNC	ENSG00000148840				160	0	0	122	8	6.15385
C10orf95	0	genome.wustl.edu	37	10	104211207	104211207	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	10	104211207	104211207	C	T	SNP	C10orf95	ENST00000239125	human	ensembl	74_37	-1	known	missense	c.19	p.A7T	0.007	NULL	NULL	-	no_errors	C10orf95	HGNC	ENSG00000120055				64	0	0	28	8	22.2222
SFXN2	0	genome.wustl.edu	37	10	104491950	104491950	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	10	104491950	104491950	G	A	SNP	SFXN2	ENST00000369893	human	ensembl	74_37	+1	known	silent	c.696	p.R232	1.000	pfam_Mtc,tigrfam_Mtc	pfam_Mtc,tigrfam_Mtc	-	no_errors	SFXN2	HGNC	ENSG00000156398				150	0	0	82	23	21.9048
SFXN2	0	genome.wustl.edu	37	10	104497475	104497475	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	10	104497475	104497475	T	C	SNP	SFXN2	ENST00000369893	human	ensembl	74_37	+1	known	missense	c.925	p.Y309H	0.999	pfam_Mtc,tigrfam_Mtc	pfam_Mtc,tigrfam_Mtc	-	no_errors	SFXN2	HGNC	ENSG00000156398				159	0	0	106	19	15.2
CNNM2	0	genome.wustl.edu	37	10	104679214	104679214	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	10	104679214	104679214	T	C	SNP	CNNM2	ENST00000369878	human	ensembl	74_37	+1	known	missense	c.977	p.V326A	1.000	pfam_DUF21	pfam_DUF21,superfamily_cNMP-bd-like	-	no_errors	CNNM2	HGNC	ENSG00000148842				94	0	0	36	24	40
NT5C2	0	genome.wustl.edu	37	10	104934730	104934730	+	RNA	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	10	104934730	104934730	A	G	SNP	NT5C2	ENST00000467380	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.160	-	-	-	no_errors	NT5C2	HGNC	ENSG00000076685				236	0	0	145	32	18.0791
PDCD11	0	genome.wustl.edu	37	10	105182764	105182764	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	10	105182764	105182764	G	A	SNP	PDCD11	ENST00000369797	human	ensembl	74_37	+1	known	silent	c.2517	p.T839	0.005	superfamily_NA-bd_OB-fold	pfam_Rbsml_prot_S1_RNA-bd_dom,pfam_Suf,superfamily_NA-bd_OB-fold,smart_RNA-binding_domain_S1,smart_HAT,pfscan_TPR-contain_dom,pfscan_Rbsml_prot_S1_RNA-bd_dom,prints_Ribosomal_S1	-	no_errors	PDCD11	HGNC	ENSG00000148843				133	0	0	83	26	23.8532
OBFC1	0	genome.wustl.edu	37	10	105642431	105642431	+	RNA	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	10	105642431	105642431	C	T	SNP	OBFC1	ENST00000466828	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	OBFC1	HGNC	ENSG00000107960				178	0	0	92	50	35.2113
SORCS3	0	genome.wustl.edu	37	10	106974273	106974273	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	10	106974273	106974273	C	A	SNP	SORCS3	ENST00000369701	human	ensembl	74_37	+1	known	missense	c.2449	p.P817T	1.000	superfamily_PKD_dom,smart_VPS10	pfam_PKD_dom,superfamily_PKD_dom,smart_VPS10,pfscan_PKD_dom	-	no_errors	SORCS3	HGNC	ENSG00000156395				123	0	0	43	32	42.6667
DUSP5	0	genome.wustl.edu	37	10	112258064	112258064	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	10	112258064	112258064	C	T	SNP	DUSP5	ENST00000369583	human	ensembl	74_37	+1	known	missense	c.185	p.A62V	0.989	pfam_Rhodanese-like_dom,superfamily_Rhodanese-like_dom,smart_Rhodanese-like_dom,pirsf_MKP,pfscan_Rhodanese-like_dom,prints_MKP	pfam_Dual-sp_phosphatase_cat-dom,pfam_Rhodanese-like_dom,pfam_Tyr_Pase_rcpt/non-rcpt,superfamily_Rhodanese-like_dom,smart_Rhodanese-like_dom,smart_Dual-sp_phosphatase_subgr_cat,smart_Tyr_Pase_cat,pirsf_MKP,pfscan_Rhodanese-like_dom,pfscan_Tyr/Dual-sp_Pase,pfscan_Dual-sp_phosphatase_subgr_cat,prints_MKP	-	no_errors	DUSP5	HGNC	ENSG00000138166				49	0	0	25	5	16.6667
ADRA2A	0	genome.wustl.edu	37	10	112838169	112838169	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	10	112838169	112838169	C	A	SNP	ADRA2A	ENST00000280155	human	ensembl	74_37	+1	known	missense	c.415	p.L139M	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_ADRA2A_rcpt,prints_GPCR_Rhodpsn,prints_ADR_fam,prints_Musac_Ach_rcpt	-	no_errors	ADRA2A	HGNC	ENSG00000150594				80	0	0	39	7	15.2174
GPAM	0	genome.wustl.edu	37	10	113913352	113913352	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	10	113913352	113913352	G	A	SNP	GPAM	ENST00000348367	human	ensembl	74_37	-1	known	nonsense	c.2443	p.R815*	1.000	NULL	pfam_Plipid/glycerol_acylTrfase,smart_Plipid/glycerol_acylTrfase	-	no_errors	GPAM	HGNC	ENSG00000119927				282	0	0	133	65	32.8283
NRAP	0	genome.wustl.edu	37	10	115355426	115355426	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	10	115355426	115355426	G	T	SNP	NRAP	ENST00000369358	human	ensembl	74_37	-1	known	missense	c.4516	p.P1506T	1.000	pfam_Nebulin_35r-motif,smart_Nebulin_35r-motif,pfscan_Nebulin_35r-motif	pfam_Nebulin_35r-motif,pfam_Znf_LIM,smart_Znf_LIM,smart_Nebulin_35r-motif,pfscan_Znf_LIM,pfscan_Nebulin_35r-motif,prints_Nebulin	-	no_errors	NRAP	HGNC	ENSG00000197893				204	1	0.487805	90	34	27.4194
ADRB1	0	genome.wustl.edu	37	10	115804211	115804211	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	10	115804211	115804211	T	C	SNP	ADRB1	ENST00000369295	human	ensembl	74_37	+1	known	missense	c.320	p.M107T	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_7TM,prints_ADRB1_rcpt,prints_GPCR_Rhodpsn,prints_ADR_fam,prints_5HT6_rcpt	-	no_errors	ADRB1	HGNC	ENSG00000043591				171	1	0.581395	80	30	27.2727
TDRD1	0	genome.wustl.edu	37	10	115973165	115973165	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	10	115973165	115973165	T	C	SNP	TDRD1	ENST00000251864	human	ensembl	74_37	+1	known	missense	c.1892	p.V631A	0.147	NULL	pfam_Tudor,pfam_Znf_MYND,smart_Tudor,pfscan_Tudor,pfscan_Znf_MYND	-	no_errors	TDRD1	HGNC	ENSG00000095627				200	0	0	117	37	24.026
ABLIM1	0	genome.wustl.edu	37	10	116203839	116203839	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	10	116203839	116203839	G	A	SNP	ABLIM1	ENST00000277895	human	ensembl	74_37	-1	known	missense	c.1882	p.R628W	1.000	NULL	pfam_Znf_LIM,pfam_Villin_headpiece,superfamily_Villin_headpiece,smart_Znf_LIM,smart_Villin_headpiece,pfscan_Villin_headpiece,pfscan_Znf_LIM	-	no_errors	ABLIM1	HGNC	ENSG00000099204				255	0	0	126	54	30
ATRNL1	0	genome.wustl.edu	37	10	117309003	117309003	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	10	117309003	117309003	T	C	SNP	ATRNL1	ENST00000355044	human	ensembl	74_37	+1	known	missense	c.3752	p.V1251A	0.990	NULL	pfam_Kelch_1,pfam_Kelch_2,pfam_Plexin_repeat,pfam_CUB_dom,pfam_EGF_extracell,superfamily_C-type_lectin_fold,superfamily_CUB_dom,superfamily_Plexin-like_fold,smart_EG-like_dom,smart_CUB_dom,smart_Plexin-like_fold,smart_C-type_lectin,smart_EGF_laminin,pfscan_CUB_dom,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_C-type_lectin	-	no_errors	ATRNL1	HGNC	ENSG00000107518				98	0	0	54	25	31.6456
SLC18A2	0	genome.wustl.edu	37	10	119001291	119001291	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	10	119001291	119001291	G	A	SNP	SLC18A2	ENST00000298472	human	ensembl	74_37	+1	known	silent	c.87	p.A29	0.999	superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC18A2	HGNC	ENSG00000165646				58	0	0	17	15	46.875
SLC18A2	0	genome.wustl.edu	37	10	119027216	119027216	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	10	119027216	119027216	A	G	SNP	SLC18A2	ENST00000298472	human	ensembl	74_37	+1	known	missense	c.1155	p.I385M	0.982	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC18A2	HGNC	ENSG00000165646				57	0	0	16	15	48.3871
INPP5F	0	genome.wustl.edu	37	10	121567530	121567530	+	Silent	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	10	121567530	121567530	T	C	SNP	INPP5F	ENST00000361976	human	ensembl	74_37	+1	known	silent	c.1527	p.G509	0.398	pfscan_Syja_N	pfam_Syja_N,pfam_Inositol_phosphatase,pfscan_Syja_N	-	no_errors	INPP5F	HGNC	ENSG00000198825				167	0	0	91	27	22.8814
MCMBP	0	genome.wustl.edu	37	10	121616985	121616985	+	RNA	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	10	121616985	121616985	T	C	SNP	MCMBP	ENST00000495407	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	MCMBP	HGNC	ENSG00000197771				56	0	0	45	6	11.7647
SEC23IP	0	genome.wustl.edu	37	10	121677919	121677919	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	10	121677919	121677919	T	A	SNP	SEC23IP	ENST00000369075	human	ensembl	74_37	+1	known	missense	c.1768	p.F590I	1.000	NULL	pfam_DDHD,pfam_SAM_type1,superfamily_SAM/pointed,smart_SAM,pfscan_DDHD	-	no_errors	SEC23IP	HGNC	ENSG00000107651				88	0	0	51	12	19.0476
ACADSB	0	genome.wustl.edu	37	10	124800876	124800876	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	10	124800876	124800876	C	T	SNP	ACADSB	ENST00000358776	human	ensembl	74_37	+1	known	missense	c.662	p.A221V	0.994	pfam_Acyl-CoA_Oxase/DH_cen-dom,superfamily_AcylCoA_DH/oxidase_NM_dom	pfam_AcylCo_DH/oxidase_C,pfam_AcylCoA_DH/ox_N,pfam_Acyl-CoA_DH_2_C,pfam_Acyl-CoA_Oxase/DH_cen-dom,superfamily_AcylCoA_DH/oxidase_NM_dom,superfamily_AcylCo_DH/oxidase_C	-	no_errors	ACADSB	HGNC	ENSG00000196177				272	0	0	129	48	27.1186
BUB3	0	genome.wustl.edu	37	10	124914613	124914613	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	10	124914613	124914613	G	A	SNP	BUB3	ENST00000368865	human	ensembl	74_37	+1	known	silent	c.180	p.L60	0.994	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	BUB3	HGNC	ENSG00000154473				103	0	0	80	7	8.04598
CPXM2	0	genome.wustl.edu	37	10	125539730	125539730	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	10	125539730	125539730	T	C	SNP	CPXM2	ENST00000241305	human	ensembl	74_37	-1	known	missense	c.931	p.T311A	1.000	NULL	pfam_Peptidase_M14,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,superfamily_CarboxyPept-like_regulatory,smart_Coagulation_fac_5/8-C_type_dom,smart_Peptidase_M14,pfscan_Coagulation_fac_5/8-C_type_dom,prints_Peptidase_M14	-	no_errors	CPXM2	HGNC	ENSG00000121898				298	0	0	184	17	8.45771
CPXM2	0	genome.wustl.edu	37	10	125601969	125601969	+	Silent	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	10	125601969	125601969	C	T	SNP	CPXM2	ENST00000241305	human	ensembl	74_37	-1	known	silent	c.549	p.A183	0.150	pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,smart_Coagulation_fac_5/8-C_type_dom,pfscan_Coagulation_fac_5/8-C_type_dom	pfam_Peptidase_M14,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,superfamily_CarboxyPept-like_regulatory,smart_Coagulation_fac_5/8-C_type_dom,smart_Peptidase_M14,pfscan_Coagulation_fac_5/8-C_type_dom,prints_Peptidase_M14	-	no_errors	CPXM2	HGNC	ENSG00000121898				103	0	0	42	14	25
BCCIP	0	genome.wustl.edu	37	10	127524753	127524753	+	Silent	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	10	127524753	127524753	A	G	SNP	BCCIP	ENST00000278100	human	ensembl	74_37	+1	known	silent	c.855	p.V285	0.001	NULL	NULL	-	no_errors	BCCIP	HGNC	ENSG00000107949				246	0	0	123	58	32.0442
FAM196A	0	genome.wustl.edu	37	10	128952176	128952176	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	10	128952176	128952176	C	T	SNP	FAM196A	ENST00000522781	human	ensembl	74_37	-1	known	missense	c.1196	p.R399Q	1.000	NULL	NULL	-	no_errors	FAM196A	HGNC	ENSG00000188916				116	0	0	77	9	10.4651
MKI67	0	genome.wustl.edu	37	10	129904261	129904261	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	10	129904261	129904261	G	A	SNP	MKI67	ENST00000368654	human	ensembl	74_37	-1	known	missense	c.5843	p.A1948V	0.000	pfam_K167R	pfam_K167R,pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_FHA_dom,pfscan_FHA_dom	-	no_errors	MKI67	HGNC	ENSG00000148773				547	0	0	267	123	31.5385
MKI67	0	genome.wustl.edu	37	10	129906745	129906745	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	10	129906745	129906745	G	C	SNP	MKI67	ENST00000368654	human	ensembl	74_37	-1	known	missense	c.3359	p.T1120S	0.001	NULL	pfam_K167R,pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_FHA_dom,pfscan_FHA_dom	-	no_errors	MKI67	HGNC	ENSG00000148773				662	1	0.15083	338	138	28.9916
OPTN	0	genome.wustl.edu	37	10	13166057	13166057	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	10	13166057	13166057	G	T	SNP	OPTN	ENST00000263036	human	ensembl	74_37	+1	known	missense	c.945	p.E315D	0.986	NULL	pfam_NEMO_N	-	no_errors	OPTN	HGNC	ENSG00000123240				41	0	0	25	6	19.3548
PHYH	0	genome.wustl.edu	37	10	13337526	13337526	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	10	13337526	13337526	A	G	SNP	PHYH	ENST00000263038	human	ensembl	74_37	-1	known	missense	c.215	p.L72P	1.000	pfam_Phytyl_CoA_dOase	pfam_Phytyl_CoA_dOase	-	no_errors	PHYH	HGNC	ENSG00000107537				91	0	0	63	16	20.2532
TTC40	0	genome.wustl.edu	37	10	134628370	134628370	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	10	134628370	134628370	C	T	SNP	TTC40	ENST00000263170	human	ensembl	74_37	-1	known	missense	c.1649	p.S550N	0.000	NULL	NULL	-	no_errors	TTC40	HGNC	ENSG00000171811				328	0	0	274	17	5.84192
TTC40	0	genome.wustl.edu	37	10	134750555	134750555	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	10	134750555	134750555	C	T	SNP	TTC40	ENST00000368582	human	ensembl	74_37	-1	known	missense	c.665	p.R222H	0.143	NULL	NULL	-	no_errors	TTC40	HGNC	ENSG00000171811				19	0	0	14	8	36.3636
FAM171A1	0	genome.wustl.edu	37	10	15325918	15325918	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	10	15325918	15325918	T	C	SNP	FAM171A1	ENST00000378116	human	ensembl	74_37	-1	known	missense	c.284	p.Y95C	0.998	pfam_Uncharacterised_FAM171	pfam_Uncharacterised_FAM171	-	no_errors	FAM171A1	HGNC	ENSG00000148468				100	0	0	56	15	21.1268
ITGA8	0	genome.wustl.edu	37	10	15720763	15720763	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	10	15720763	15720763	G	A	SNP	ITGA8	ENST00000378076	human	ensembl	74_37	-1	known	silent	c.588	p.G196	0.996	NULL	pfam_Integrin_alpha-2,pfam_FG-GAP,pfam_Integrin_alpha_C_CS,smart_Int_alpha_beta-p,prints_Integrin_alpha	-	no_errors	ITGA8	HGNC	ENSG00000077943				161	0	0	73	40	35.3982
FAM188A	0	genome.wustl.edu	37	10	15875660	15875660	+	Silent	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	10	15875660	15875660	T	C	SNP	FAM188A	ENST00000277632	human	ensembl	74_37	-1	known	silent	c.699	p.V233	0.666	NULL	NULL	-	no_errors	FAM188A	HGNC	ENSG00000148481				111	0	0	90	6	6.25
CUBN	0	genome.wustl.edu	37	10	16967691	16967691	+	Silent	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	10	16967691	16967691	A	G	SNP	CUBN	ENST00000377833	human	ensembl	74_37	-1	known	silent	c.6354	p.C2118	0.998	pfam_CUB_dom,superfamily_CUB_dom,smart_CUB_dom,pfscan_CUB_dom	pfam_CUB_dom,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,superfamily_CUB_dom,superfamily_Growth_fac_rcpt_N_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_CUB_dom,pfscan_CUB_dom,pfscan_EG-like_dom	-	no_errors	CUBN	HGNC	ENSG00000107611				119	1	0.833333	56	18	24.3243
PLXDC2	0	genome.wustl.edu	37	10	20453414	20453414	+	Silent	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	10	20453414	20453414	A	G	SNP	PLXDC2	ENST00000377252	human	ensembl	74_37	+1	known	silent	c.801	p.T267	1.000	NULL	pfam_Plexin_repeat,superfamily_Plexin-like_fold,smart_Plexin-like_fold	-	no_errors	PLXDC2	HGNC	ENSG00000120594				111	0	0	45	22	32.8358
SKIDA1	0	genome.wustl.edu	37	10	21805019	21805019	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	10	21805019	21805019	G	C	SNP	SKIDA1	ENST00000449193	human	ensembl	74_37	-1	known	missense	c.1733	p.A578G	1.000	NULL	pfam_Transform_Ski,superfamily_DNA-bd_dom_put	-	no_errors	SKIDA1	HGNC	ENSG00000180592				233	0	0	114	50	30.4878
ARHGAP21	0	genome.wustl.edu	37	10	24909045	24909045	+	Silent	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	10	24909045	24909045	C	T	SNP	ARHGAP21	ENST00000396432	human	ensembl	74_37	-1	known	silent	c.1779	p.L593	0.001	NULL	pfam_RhoGAP_dom,pfam_Pleckstrin_homology,pfam_PDZ,superfamily_Rho_GTPase_activation_prot,superfamily_PDZ,smart_PDZ,smart_Pleckstrin_homology,smart_RhoGAP_dom,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_RhoGAP_dom	-	no_errors	ARHGAP21	HGNC	ENSG00000107863				257	0	0	121	57	32.0225
ARHGAP21	0	genome.wustl.edu	37	10	24910013	24910013	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	10	24910013	24910013	C	T	SNP	ARHGAP21	ENST00000396432	human	ensembl	74_37	-1	known	missense	c.811	p.V271I	0.898	NULL	pfam_RhoGAP_dom,pfam_Pleckstrin_homology,pfam_PDZ,superfamily_Rho_GTPase_activation_prot,superfamily_PDZ,smart_PDZ,smart_Pleckstrin_homology,smart_RhoGAP_dom,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_RhoGAP_dom	-	no_errors	ARHGAP21	HGNC	ENSG00000107863				133	0	0	104	8	7.14286
KIAA1462	0	genome.wustl.edu	37	10	30315149	30315149	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	10	30315149	30315149	G	A	SNP	KIAA1462	ENST00000375377	human	ensembl	74_37	-1	known	missense	c.3928	p.R1310C	0.000	NULL	NULL	-	no_errors	KIAA1462	HGNC	ENSG00000165757				162	0	0	98	40	28.9855
MTPAP	0	genome.wustl.edu	37	10	30615351	30615351	+	Splice_Site	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	10	30615351	30615351	A	G	SNP	MTPAP	ENST00000358107	human	ensembl	74_37	-1	known	splice_site	c.1382+2	e6+2	1.000	-	-	-	no_errors	MTPAP	HGNC	ENSG00000107951				189	0	0	85	38	30.8943
ZNF438	0	genome.wustl.edu	37	10	31134236	31134236	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	10	31134236	31134236	T	C	SNP	ZNF438	ENST00000361310	human	ensembl	74_37	-1	known	missense	c.2141	p.H714R	0.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF438	HGNC	ENSG00000183621				165	0	0	112	12	9.67742
ZNF438	0	genome.wustl.edu	37	10	31138295	31138295	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	10	31138295	31138295	G	A	SNP	ZNF438	ENST00000361310	human	ensembl	74_37	-1	known	missense	c.1039	p.P347S	0.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF438	HGNC	ENSG00000183621				214	0	0	119	21	15
PFKP	0	genome.wustl.edu	37	10	3147695	3147695	+	Splice_Site	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	10	3147695	3147695	T	C	SNP	PFKP	ENST00000381125	human	ensembl	74_37	+1	known	splice_site	c.774+2	e7+2	1.000	-	-	-	no_errors	PFKP	HGNC	ENSG00000067057				124	0	0	106	6	5.35714
PARD3	0	genome.wustl.edu	37	10	34620079	34620079	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	10	34620079	34620079	G	A	SNP	PARD3	ENST00000374789	human	ensembl	74_37	-1	known	silent	c.2808	p.P936	0.001	NULL	pfam_DUF3534,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	PARD3	HGNC	ENSG00000148498				152	0	0	56	30	34.8837
DIP2C	0	genome.wustl.edu	37	10	410319	410319	+	Silent	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	10	410319	410319	C	T	SNP	DIP2C	ENST00000280886	human	ensembl	74_37	-1	known	silent	c.2472	p.R824	0.988	NULL	pfam_AMP-dep_Synth/Lig,pfam_DMAP1-bd	-	no_errors	DIP2C	HGNC	ENSG00000151240				142	0	0	88	14	13.7255
ZNF37BP	0	genome.wustl.edu	37	10	43015767	43015767	+	RNA	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	10	43015767	43015767	C	T	SNP	ZNF37BP	ENST00000452075	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	ZNF37BP	HGNC	ENSG00000234420				36	0	0	22	6	21.4286
ALOX5	0	genome.wustl.edu	37	10	45891350	45891350	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	10	45891350	45891350	C	T	SNP	ALOX5	ENST00000374391	human	ensembl	74_37	+1	known	missense	c.397	p.R133C	0.998	superfamily_LipOase_C	pfam_LipOase_C,pfam_PLAT/LH2_dom,superfamily_LipOase_C,superfamily_Lipase_LipOase,smart_PLAT/LH2_dom,prints_LipOase_mml,prints_LipOase_C,pfscan_PLAT/LH2_dom	-	no_errors	ALOX5	HGNC	ENSG00000012779				113	0	0	57	18	24
FAM35BP	0	genome.wustl.edu	37	10	46918591	46918591	+	RNA	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	10	46918591	46918591	C	T	SNP	FAM35BP	ENST00000475914	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.939	-	-	-	no_errors	FAM35BP	HGNC	ENSG00000165874				28	0	0	15	6	28.5714
GDF2	0	genome.wustl.edu	37	10	48413624	48413624	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	10	48413624	48413624	T	C	SNP	GDF2	ENST00000249598	human	ensembl	74_37	-1	known	missense	c.1244	p.K415R	1.000	pfam_TGF-b_C,smart_TGF-b_C	pfam_TGF-b_C,pfam_TGF-b_N,smart_TGF-b_C,prints_Inhibin_asu	-	no_errors	GDF2	HGNC	ENSG00000128802				39	0	0	23	16	41.0256
FAM25C	0	genome.wustl.edu	37	10	49199766	49199766	+	RNA	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	10	49199766	49199766	C	T	SNP	FAM25C	ENST00000479781	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.040	-	-	-	no_errors	FAM25C	HGNC	ENSG00000188279				36	0	0	9	11	55
FRMPD2	0	genome.wustl.edu	37	10	49450347	49450347	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	10	49450347	49450347	C	T	SNP	FRMPD2	ENST00000374201	human	ensembl	74_37	-1	known	missense	c.424	p.E142K	0.995	superfamily_Kinase-like_dom,smart_KIND	pfam_PDZ,pfam_FERM_central,pfam_FERM_PH-like_C,pfam_FERM_N,superfamily_PDZ,superfamily_FERM_central,superfamily_Kinase-like_dom,smart_KIND,smart_Band_41_domain,smart_PDZ,pfscan_FERM_domain,pfscan_PDZ,prints_Band_41_fam	-	no_errors	FRMPD2	HGNC	ENSG00000170324				198	0	0	95	53	35.8108
LRRC18	0	genome.wustl.edu	37	10	50121515	50121515	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	10	50121515	50121515	G	A	SNP	LRRC18	ENST00000374160	human	ensembl	74_37	-1	known	missense	c.686	p.T229M	0.000	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC18	HGNC	ENSG00000165383				310	1	0.321543	172	87	33.5907
C10orf71	0	genome.wustl.edu	37	10	50531160	50531160	+	Silent	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	10	50531160	50531160	T	C	SNP	C10orf71	ENST00000374144	human	ensembl	74_37	+1	known	silent	c.570	p.S190	0.999	NULL	NULL	-	no_errors	C10orf71	HGNC	ENSG00000177354				84	0	0	45	9	16.6667
PGBD3	0	genome.wustl.edu	37	10	50723435	50723435	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	10	50723435	50723435	C	T	SNP	PGBD3	ENST00000603152	human	ensembl	74_37	-1	known	missense	c.3130	p.E1044K	0.228	NULL	NULL	-	no_errors	PGBD3	HGNC	ENSG00000243251				292	0	0	162	21	11.4754
SLC18A3	0	genome.wustl.edu	37	10	50820315	50820315	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	10	50820315	50820315	A	T	SNP	SLC18A3	ENST00000374115	human	ensembl	74_37	+1	known	missense	c.1529	p.E510V	0.000	NULL	pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC18A3	HGNC	ENSG00000187714				137	0	0	94	10	9.61538
OGDHL	0	genome.wustl.edu	37	10	50954898	50954898	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	10	50954898	50954898	G	A	SNP	OGDHL	ENST00000374103	human	ensembl	74_37	-1	known	silent	c.1194	p.D398	0.883	pfam_DH_E1,pirsf_2oxoglutarate_DH_E1,tigrfam_2oxoglutarate_DH_E1	pfam_DH_E1,pfam_Transketolase-like_Pyr-bd,smart_Transketolase-like_Pyr-bd,pirsf_2oxoglutarate_DH_E1,tigrfam_2oxoglutarate_DH_E1	-	no_errors	OGDHL	HGNC	ENSG00000197444				98	0	0	59	30	33.7079
AKR1C4	0	genome.wustl.edu	37	10	5254588	5254588	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	10	5254588	5254588	C	T	SNP	AKR1C4	ENST00000263126	human	ensembl	74_37	+1	known	missense	c.580	p.H194Y	1.000	pfam_NADP_OxRdtase_dom,superfamily_NADP_OxRdtase_dom,prints_Aldo/keto_reductase_subgr	pfam_NADP_OxRdtase_dom,superfamily_NADP_OxRdtase_dom,prints_Aldo/keto_reductase_subgr	-	no_errors	AKR1C4	HGNC	ENSG00000198610				82	0	0	63	6	8.69565
MBL2	0	genome.wustl.edu	37	10	54527904	54527904	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	10	54527904	54527904	G	A	SNP	MBL2	ENST00000373968	human	ensembl	74_37	-1	known	missense	c.740	p.P247L	0.277	superfamily_C-type_lectin_fold	pfam_C-type_lectin,pfam_Collagen,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	-	no_errors	MBL2	HGNC	ENSG00000165471				395	1	0.252525	200	91	31.2715
FAM208B	0	genome.wustl.edu	37	10	5781988	5781988	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	10	5781988	5781988	A	G	SNP	FAM208B	ENST00000328090	human	ensembl	74_37	+1	known	missense	c.1855	p.S619G	0.000	pfam_DUF3715	pfam_DUF3715,pfam_DUF3699	-	no_errors	FAM208B	HGNC	ENSG00000108021				212	0	0	94	38	28.7879
FAM208B	0	genome.wustl.edu	37	10	5788345	5788345	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	10	5788345	5788345	G	A	SNP	FAM208B	ENST00000328090	human	ensembl	74_37	+1	known	silent	c.2961	p.Q987	0.057	pfam_DUF3715	pfam_DUF3715,pfam_DUF3699	-	no_errors	FAM208B	HGNC	ENSG00000108021				143	1	0.694444	56	45	44.5545
FAM208B	0	genome.wustl.edu	37	10	5788629	5788629	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	10	5788629	5788629	T	C	SNP	FAM208B	ENST00000328090	human	ensembl	74_37	+1	known	missense	c.3245	p.L1082S	0.866	pfam_DUF3699	pfam_DUF3715,pfam_DUF3699	-	no_errors	FAM208B	HGNC	ENSG00000108021				170	0	0	126	7	5.26316
ANKRD16	0	genome.wustl.edu	37	10	5925938	5925938	+	Silent	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	10	5925938	5925938	T	C	SNP	ANKRD16	ENST00000380092	human	ensembl	74_37	-1	known	silent	c.681	p.E227	0.014	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	ANKRD16	HGNC	ENSG00000134461				69	0	0	48	3	5.88235
FBXO18	0	genome.wustl.edu	37	10	5963252	5963252	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	10	5963252	5963252	T	C	SNP	FBXO18	ENST00000379999	human	ensembl	74_37	+1	known	missense	c.2285	p.V762A	1.000	superfamily_P-loop_NTPase	pfam_UvrD-like_ATP-bd,pfam_F-box_dom,superfamily_P-loop_NTPase,superfamily_F-box_dom,pfscan_F-box_dom	-	no_errors	FBXO18	HGNC	ENSG00000134452				237	0	0	133	55	29.2553
IPMK	0	genome.wustl.edu	37	10	59986902	59986902	+	Splice_Site	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	10	59986902	59986902	T	C	SNP	IPMK	ENST00000373935	human	ensembl	74_37	-1	known	splice_site	c.277-2	e3-2	1.000	-	-	-	no_errors	IPMK	HGNC	ENSG00000151151				78	0	0	43	23	34.8485
CCDC6	0	genome.wustl.edu	37	10	61564176	61564176	+	Splice_Site	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	10	61564176	61564176	A	G	SNP	CCDC6	ENST00000263102	human	ensembl	74_37	-1	known	splice_site	c.1105+2	e7+2	1.000	-	-	-	no_errors	CCDC6	HGNC	ENSG00000108091				131	0	0	53	29	35.3659
ANK3	0	genome.wustl.edu	37	10	61815518	61815518	+	Silent	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	10	61815518	61815518	A	G	SNP	ANK3	ENST00000280772	human	ensembl	74_37	-1	known	silent	c.12963	p.C4321	1.000	NULL	pfam_Ankyrin_rpt,pfam_ZU5,pfam_Death_domain,superfamily_Ankyrin_rpt-contain_dom,superfamily_DEATH-like_dom,smart_Ankyrin_rpt,smart_ZU5,smart_Death_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Death_domain,pfscan_ZU5,prints_Ankyrin_rpt	-	no_errors	ANK3	HGNC	ENSG00000151150				543	1	0.183824	353	49	12.1891
ANK3	0	genome.wustl.edu	37	10	61835896	61835896	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	10	61835896	61835896	T	C	SNP	ANK3	ENST00000280772	human	ensembl	74_37	-1	known	missense	c.4743	p.I1581M	1.000	NULL	pfam_Ankyrin_rpt,pfam_ZU5,pfam_Death_domain,superfamily_Ankyrin_rpt-contain_dom,superfamily_DEATH-like_dom,smart_Ankyrin_rpt,smart_ZU5,smart_Death_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Death_domain,pfscan_ZU5,prints_Ankyrin_rpt	-	no_errors	ANK3	HGNC	ENSG00000151150				329	0	0	214	43	16.7315
PFKFB3	0	genome.wustl.edu	37	10	6257276	6257276	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	10	6257276	6257276	C	T	SNP	PFKFB3	ENST00000540253	human	ensembl	74_37	+1	known	missense	c.337	p.R113W	1.000	pfam_6Phosfructo_kin,pfam_Chromatin_KTI12,superfamily_P-loop_NTPase,pirsf_Bifunct_6PFK/fruc_bisP_Ptase	pfam_6Phosfructo_kin,pfam_His_Pase_superF_clade-1,pfam_Chromatin_KTI12,superfamily_P-loop_NTPase,smart_His_Pase_superF_clade-1,pirsf_Bifunct_6PFK/fruc_bisP_Ptase,prints_6Pfruct_kin	-	no_errors	PFKFB3	HGNC	ENSG00000170525				62	0	0	19	14	42.4242
ZNF365	0	genome.wustl.edu	37	10	64414648	64414648	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	10	64414648	64414648	G	A	SNP	ZNF365	ENST00000395251	human	ensembl	74_37	+1	known	silent	c.84	p.L28	0.000	NULL	NULL	-	no_errors	ZNF365	HGNC	ENSG00000138311				237	0	0	111	52	31.9018
EGR2	0	genome.wustl.edu	37	10	64573060	64573060	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	10	64573060	64573060	G	A	SNP	EGR2	ENST00000242480	human	ensembl	74_37	-1	known	silent	c.1338	p.G446	0.480	NULL	pfam_DUF3446,pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	EGR2	HGNC	ENSG00000122877				139	1	0.714286	66	39	37.1429
JMJD1C	0	genome.wustl.edu	37	10	64966934	64966934	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	10	64966934	64966934	C	T	SNP	JMJD1C	ENST00000399262	human	ensembl	74_37	-1	known	missense	c.4495	p.A1499T	0.969	NULL	pfam_JmjC_dom,smart_JmjC_dom,pfscan_JmjC_dom	-	no_errors	JMJD1C	HGNC	ENSG00000171988				219	0	0	95	46	32.6241
JMJD1C	0	genome.wustl.edu	37	10	65140188	65140188	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	10	65140188	65140188	A	G	SNP	JMJD1C	ENST00000399262	human	ensembl	74_37	-1	known	missense	c.223	p.Y75H	1.000	NULL	pfam_JmjC_dom,smart_JmjC_dom,pfscan_JmjC_dom	-	no_errors	JMJD1C	HGNC	ENSG00000171988				112	0	0	85	5	5.55556
DNA2	0	genome.wustl.edu	37	10	70231557	70231557	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	10	70231557	70231557	G	T	SNP	DNA2	ENST00000399180	human	ensembl	74_37	-1	known	missense	c.323	p.P108Q	0.002	NULL	pfam_DNA_replication_fac_Dna2_N,superfamily_P-loop_NTPase	-	no_errors	DNA2	HGNC	ENSG00000138346				46	0	0	20	13	39.3939
TET1	0	genome.wustl.edu	37	10	70406352	70406352	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	10	70406352	70406352	C	T	SNP	TET1	ENST00000373644	human	ensembl	74_37	+1	known	missense	c.3866	p.T1289M	0.006	NULL	pfam_Znf_CXXC,pfscan_Znf_CXXC	-	no_errors	TET1	HGNC	ENSG00000138336				152	1	0.653595	95	39	29.1045
STOX1	0	genome.wustl.edu	37	10	70644585	70644585	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	10	70644585	70644585	C	T	SNP	STOX1	ENST00000298596	human	ensembl	74_37	+1	known	nonsense	c.1033	p.R345*	1.000	NULL	pfam_Storkhead-box_winged-helix	-	no_errors	STOX1	HGNC	ENSG00000165730				175	1	0.568182	108	55	33.7423
HKDC1	0	genome.wustl.edu	37	10	71018574	71018574	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	10	71018574	71018574	T	C	SNP	HKDC1	ENST00000354624	human	ensembl	74_37	+1	known	missense	c.2075	p.I692T	0.995	pfam_Hexokinase_C	pfam_Hexokinase_C,pfam_Hexokinase_N,prints_Hexokinase	-	no_errors	HKDC1	HGNC	ENSG00000156510				138	0	0	101	6	5.60748
COL13A1	0	genome.wustl.edu	37	10	71562400	71562400	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	10	71562400	71562400	G	A	SNP	COL13A1	ENST00000356340	human	ensembl	74_37	+1	known	missense	c.221	p.R74H	1.000	NULL	pfam_Collagen	-	no_errors	COL13A1	HGNC	ENSG00000197467				269	0	0	144	46	24.2105
SGPL1	0	genome.wustl.edu	37	10	72628142	72628142	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	10	72628142	72628142	A	G	SNP	SGPL1	ENST00000373202	human	ensembl	74_37	+1	known	missense	c.656	p.K219R	1.000	pfam_PyrdxlP-dep_de-COase,pfam_Aminotrans_V/Cys_dSase,pfam_Aminotransferase_I/II,superfamily_PyrdxlP-dep_Trfase	pfam_PyrdxlP-dep_de-COase,pfam_Aminotrans_V/Cys_dSase,pfam_Aminotransferase_I/II,superfamily_PyrdxlP-dep_Trfase	-	no_errors	SGPL1	HGNC	ENSG00000166224				223	0	0	149	20	11.8343
CDH23	0	genome.wustl.edu	37	10	73464824	73464824	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	10	73464824	73464824	C	T	SNP	CDH23	ENST00000224721	human	ensembl	74_37	+1	putative	missense	c.2905	p.R969W	0.990	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH23	HGNC	ENSG00000107736				85	0	0	50	26	34.2105
CAMK2G	0	genome.wustl.edu	37	10	75576611	75576611	+	RNA	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	10	75576611	75576611	T	C	SNP	CAMK2G	ENST00000477205	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.004	-	-	-	no_errors	CAMK2G	HGNC	ENSG00000148660				35	0	0	14	4	22.2222
CAMK2G	0	genome.wustl.edu	37	10	75609032	75609032	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	10	75609032	75609032	T	C	SNP	CAMK2G	ENST00000423381	human	ensembl	74_37	-1	known	missense	c.401	p.H134R	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ca/CaM-dep_prot_kinase-assoc,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	CAMK2G	HGNC	ENSG00000148660				72	0	0	36	10	21.7391
AP3M1	0	genome.wustl.edu	37	10	75897994	75897994	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	10	75897994	75897994	G	A	SNP	AP3M1	ENST00000355264	human	ensembl	74_37	-1	known	silent	c.144	p.V48	1.000	pfam_AP_mu_sigma_su,superfamily_Longin-like_dom,pirsf_Clathrin_mu	pfam_Clathrin_mu_C,pfam_AP_mu_sigma_su,superfamily_Clathrin_mu_C,superfamily_Longin-like_dom,pirsf_Clathrin_mu,pfscan_Clathrin_mu_C,prints_Clathrin_mu	-	no_errors	AP3M1	HGNC	ENSG00000185009				224	0	0	146	10	6.41026
KAT6B	0	genome.wustl.edu	37	10	76789593	76789593	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	10	76789593	76789593	G	A	SNP	KAT6B	ENST00000287239	human	ensembl	74_37	+1	known	missense	c.5011	p.G1671S	1.000	NULL	pfam_MOZ_SAS,pfam_Znf_PHD-finger,pfam_Histone_H1/H5_H15,superfamily_Acyl_CoA_acyltransferase,superfamily_Znf_FYVE_PHD,smart_Histone_H1/H5_H15,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	KAT6B	HGNC	ENSG00000156650				181	0	0	80	38	32.2034
DUPD1	0	genome.wustl.edu	37	10	76797754	76797754	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	10	76797754	76797754	A	G	SNP	DUPD1	ENST00000338487	human	ensembl	74_37	-1	known	missense	c.503	p.M168T	1.000	pfam_Dual-sp_phosphatase_cat-dom,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Tyr/Dual-sp_Pase,pfscan_Dual-sp_phosphatase_subgr_cat	pfam_Dual-sp_phosphatase_cat-dom,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Tyr/Dual-sp_Pase,pfscan_Dual-sp_phosphatase_subgr_cat,prints_Atypical_DUSP_famA,prints_Atypical_DUSP	-	no_errors	DUPD1	HGNC	ENSG00000188716				106	0	0	83	5	5.68182
DUPD1	0	genome.wustl.edu	37	10	76818210	76818210	+	Silent	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	10	76818210	76818210	C	T	SNP	DUPD1	ENST00000338487	human	ensembl	74_37	-1	known	silent	c.63	p.S21	0.000	NULL	pfam_Dual-sp_phosphatase_cat-dom,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Tyr/Dual-sp_Pase,pfscan_Dual-sp_phosphatase_subgr_cat,prints_Atypical_DUSP_famA,prints_Atypical_DUSP	-	no_errors	DUPD1	HGNC	ENSG00000188716				133	0	0	70	38	35.1852
DUSP13	0	genome.wustl.edu	37	10	76861702	76861702	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	10	76861702	76861702	G	A	SNP	DUSP13	ENST00000308475	human	ensembl	74_37	-1	known	missense	c.167	p.A56V	0.968	NULL	NULL	-	no_errors	DUSP13	HGNC	ENSG00000079393				232	0	0	121	50	29.2398
POLR3A	0	genome.wustl.edu	37	10	79745739	79745739	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	10	79745739	79745739	C	T	SNP	POLR3A	ENST00000372371	human	ensembl	74_37	-1	known	missense	c.2993	p.R998H	0.572	pfam_RNA_pol_Rpb1_5	pfam_RNA_pol_Rpb1_1,pfam_RNA_pol_Rpb1_5,pfam_RNA_pol_asu,pfam_RNA_pol_Rpb1_3,pfam_RNA_pol_Rpb1_4,smart_RNA_pol_N	-	no_errors	POLR3A	HGNC	ENSG00000148606				168	0	0	85	37	30.3279
ZMIZ1	0	genome.wustl.edu	37	10	81050715	81050715	+	Splice_Site	SNP	G	G	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	10	81050715	81050715	G	T	SNP	ZMIZ1	ENST00000334512	human	ensembl	74_37	+1	known	splice_site	c.541-1	e6-1	1.000	-	-	-	no_errors	ZMIZ1	HGNC	ENSG00000108175				146	0	0	63	39	38.2353
ZMIZ1	0	genome.wustl.edu	37	10	81058191	81058191	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	10	81058191	81058191	A	G	SNP	ZMIZ1	ENST00000334512	human	ensembl	74_37	+1	known	missense	c.1520	p.Y507C	1.000	NULL	pfam_Znf_MIZ,pfscan_Znf_MIZ	-	no_errors	ZMIZ1	HGNC	ENSG00000108175				486	3	0.613497	256	118	31.5508
RGR	0	genome.wustl.edu	37	10	86007506	86007506	+	RNA	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	10	86007506	86007506	A	G	SNP	RGR	ENST00000469446	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.998	-	-	-	no_errors	RGR	HGNC	ENSG00000148604				138	0	0	67	22	24.7191
BMPR1A	0	genome.wustl.edu	37	10	88677075	88677075	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	10	88677075	88677075	A	G	SNP	BMPR1A	ENST00000372037	human	ensembl	74_37	+1	known	missense	c.860	p.N287S	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_TGF_beta_rcpt_GS,pfam_Activin_rcpt,superfamily_Kinase-like_dom,smart_TGF_beta_rcpt_GS,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	BMPR1A	HGNC	ENSG00000107779				59	0	0	38	5	11.6279
ENSG00000271880	0	genome.wustl.edu	37	10	88768861	88768861	+	RNA	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	10	88768861	88768861	G	A	SNP	ENSG00000271880	ENST00000433214	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.993	-	-	-	no_errors	RP11-96C23.5	Clone_based_vega_gene	ENSG00000271880				374	0	0	196	110	35.9477
LARP4B	0	genome.wustl.edu	37	10	888953	888953	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	10	888953	888953	C	T	SNP	LARP4B	ENST00000316157	human	ensembl	74_37	-1	known	missense	c.565	p.V189M	1.000	pfam_Lupus_La_RNA-bd,smart_Lupus_La_RNA-bd,pfscan_Lupus_La_RNA-bd	pfam_Lupus_La_RNA-bd,smart_Lupus_La_RNA-bd,pfscan_Lupus_La_RNA-bd	-	no_errors	LARP4B	HGNC	ENSG00000107929				81	0	0	40	4	9.09091
MINPP1	0	genome.wustl.edu	37	10	89265036	89265036	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	10	89265036	89265036	A	G	SNP	MINPP1	ENST00000371996	human	ensembl	74_37	+1	known	missense	c.364	p.T122A	0.012	pfam_His_Pase_superF_clade-2,pirsf_Histidine_acid_Pase_euk	pfam_His_Pase_superF_clade-2,pirsf_Histidine_acid_Pase_euk	-	no_errors	MINPP1	HGNC	ENSG00000107789				41	0	0	12	10	45.4545
RNLS	0	genome.wustl.edu	37	10	90122340	90122340	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	10	90122340	90122340	G	A	SNP	RNLS	ENST00000331772	human	ensembl	74_37	-1	known	silent	c.669	p.F223	1.000	pfam_Amino_oxidase	pfam_Amino_oxidase	-	no_errors	RNLS	HGNC	ENSG00000184719				182	0	0	87	37	29.8387
LIPK	0	genome.wustl.edu	37	10	90492016	90492016	+	Silent	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	10	90492016	90492016	C	T	SNP	LIPK	ENST00000404190	human	ensembl	74_37	+1	known	silent	c.504	p.Y168	0.818	pfam_AB_hydrolase_1	pfam_AB_hydrolase_lipase,pfam_AB_hydrolase_1	-	no_errors	LIPK	HGNC	ENSG00000204021				232	0	0	106	58	35.3659
IFIT2	0	genome.wustl.edu	37	10	91066703	91066703	+	Silent	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	10	91066703	91066703	T	C	SNP	IFIT2	ENST00000371826	human	ensembl	74_37	+1	known	silent	c.990	p.N330	0.000	NULL	smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	IFIT2	HGNC	ENSG00000119922				112	0	0	82	6	6.81818
HTR7	0	genome.wustl.edu	37	10	92617294	92617294	+	Silent	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	10	92617294	92617294	C	T	SNP	HTR7	ENST00000336152	human	ensembl	74_37	-1	known	silent	c.135	p.A45	0.851	prints_5HT_7_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_5HT_7_rcpt,prints_GPCR_Rhodpsn,prints_Melcrt_ACTH_rcpt	-	no_errors	HTR7	HGNC	ENSG00000148680				43	0	0	12	7	36.8421
TNKS2	0	genome.wustl.edu	37	10	93609348	93609348	+	Silent	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	10	93609348	93609348	A	G	SNP	TNKS2	ENST00000371627	human	ensembl	74_37	+1	known	silent	c.2691	p.E897	1.000	pfam_SAM_2,pfam_SAM_type1,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	pfam_Ankyrin_rpt,pfam_Poly(ADP-ribose)pol_cat_dom,pfam_SAM_2,pfam_SAM_type1,superfamily_Ankyrin_rpt-contain_dom,superfamily_SAM/pointed,smart_Ankyrin_rpt,smart_SAM,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SAM,pfscan_Poly(ADP-ribose)pol_cat_dom,prints_Ankyrin_rpt	-	no_errors	TNKS2	HGNC	ENSG00000107854				141	0	0	95	7	6.86275
IDE	0	genome.wustl.edu	37	10	94268556	94268556	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	10	94268556	94268556	G	T	SNP	IDE	ENST00000265986	human	ensembl	74_37	-1	known	missense	c.989	p.P330H	1.000	pfam_Peptidase_M16_C,superfamily_Metalloenz_LuxS/M16	pfam_Pept_M16_N,pfam_Peptidase_M16_C,superfamily_Metalloenz_LuxS/M16	-	no_errors	IDE	HGNC	ENSG00000119912				315	0	0	183	13	6.63265
MYOF	0	genome.wustl.edu	37	10	95121229	95121229	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	10	95121229	95121229	T	C	SNP	MYOF	ENST00000359263	human	ensembl	74_37	-1	known	missense	c.2954	p.N985S	1.000	NULL	pfam_C2_dom,pfam_Ferlin_B-domain,pfam_FerIin-domain,pfam_Ferlin_A-domain,superfamily_C2_dom,smart_C2_dom,smart_Peroxin/Ferlin,pfscan_C2_dom	-	no_errors	MYOF	HGNC	ENSG00000138119				186	0	0	148	11	6.91824
PLCE1	0	genome.wustl.edu	37	10	95790955	95790955	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	10	95790955	95790955	C	T	SNP	PLCE1	ENST00000260766	human	ensembl	74_37	+1	known	missense	c.152	p.S51F	0.000	NULL	pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_Ras-assoc,pfam_RasGRF_CDC25,pfam_PLipase_C_EF-hand-like,pfam_C2_dom,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_Ras_GEF_dom,superfamily_C2_dom,smart_RasGRF_CDC25,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_dom,smart_Ras-assoc,pfscan_C2_dom,pfscan_Ras-assoc,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y,pfscan_RasGRF_CDC25,prints_Pinositol_PLipase_C	-	no_errors	PLCE1	HGNC	ENSG00000138193				129	0	0	79	39	33.0508
PLCE1	0	genome.wustl.edu	37	10	96039591	96039591	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	10	96039591	96039591	A	G	SNP	PLCE1	ENST00000260766	human	ensembl	74_37	+1	known	missense	c.4718	p.N1573S	0.997	superfamily_PLC-like_Pdiesterase_TIM-brl	pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_Ras-assoc,pfam_RasGRF_CDC25,pfam_PLipase_C_EF-hand-like,pfam_C2_dom,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_Ras_GEF_dom,superfamily_C2_dom,smart_RasGRF_CDC25,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_dom,smart_Ras-assoc,pfscan_C2_dom,pfscan_Ras-assoc,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y,pfscan_RasGRF_CDC25,prints_Pinositol_PLipase_C	-	no_errors	PLCE1	HGNC	ENSG00000138193				117	0	0	67	4	5.6338
NOC3L	0	genome.wustl.edu	37	10	96109868	96109868	+	Splice_Site	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	10	96109868	96109868	A	G	SNP	NOC3L	ENST00000371350	human	ensembl	74_37	-1	known	splice_site	c.1128+2	e9+2	0.993	-	-	-	no_errors	NOC3L	HGNC	ENSG00000173145				207	0	0	139	14	9.15033
HELLS	0	genome.wustl.edu	37	10	96350527	96350527	+	Silent	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	10	96350527	96350527	A	G	SNP	HELLS	ENST00000371332	human	ensembl	74_37	+1	known	silent	c.1899	p.E633	0.784	superfamily_P-loop_NTPase	pfam_SNF2_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	HELLS	HGNC	ENSG00000119969				100	0	0	48	30	38.4615
TLL2	0	genome.wustl.edu	37	10	98192586	98192586	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	10	98192586	98192586	G	A	SNP	TLL2	ENST00000357947	human	ensembl	74_37	-1	known	silent	c.498	p.Y166	0.831	pirsf_BMP_1/tolloid-like,pfam_Peptidase_M12A,smart_Peptidase_Metallo	pirsf_BMP_1/tolloid-like,pfam_CUB_dom,pfam_Peptidase_M12A,pfam_EGF-like_Ca-bd_dom,superfamily_CUB_dom,smart_Peptidase_Metallo,smart_CUB_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,prints_Peptidase_M12A,pfscan_CUB_dom,pfscan_EG-like_dom	-	no_errors	TLL2	HGNC	ENSG00000095587				132	0	0	60	31	34.0659
CRTAC1	0	genome.wustl.edu	37	10	99683046	99683046	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	10	99683046	99683046	C	T	SNP	CRTAC1	ENST00000370597	human	ensembl	74_37	-1	known	missense	c.533	p.R178H	1.000	NULL	pfam_FG-GAP,pfam_UnbV_ASPIC,pfam_EGF-like_Ca-bd_dom,smart_EGF-like_Ca-bd_dom	-	no_errors	CRTAC1	HGNC	ENSG00000095713				88	0	0	50	21	29.5775
KIAA1377	0	genome.wustl.edu	37	11	101834511	101834511	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	101834511	101834511	A	T	SNP	KIAA1377	ENST00000263468	human	ensembl	74_37	+1	known	missense	c.2745	p.E915D	0.992	NULL	NULL	-	no_errors	KIAA1377	HGNC	ENSG00000110318				216	1	0.460829	108	46	29.8701
PDGFD	0	genome.wustl.edu	37	11	103866871	103866871	+	Silent	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	103866871	103866871	C	T	SNP	PDGFD	ENST00000393158	human	ensembl	74_37	-1	known	silent	c.432	p.T144	1.000	pfam_CUB_dom,superfamily_CUB_dom,smart_CUB_dom,pfscan_CUB_dom	pfam_CUB_dom,pfam_PDGF/VEGF_dom,superfamily_CUB_dom,smart_CUB_dom,pfscan_CUB_dom,pfscan_PDGF/VEGF_dom	-	no_errors	PDGFD	HGNC	ENSG00000170962				147	0	0	64	31	32.6316
DDI1	0	genome.wustl.edu	37	11	103907980	103907980	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	103907980	103907980	G	A	SNP	DDI1	ENST00000302259	human	ensembl	74_37	+1	known	missense	c.430	p.A144T	0.075	NULL	pfam_Peptidase_aspartic_DDI1-type,pfam_Ubiquitin_dom,pfam_RVP_2,pfam_Pept_A2A_retrovirus_sg,superfamily_Peptidase_aspartic_dom,smart_Ubiquitin_dom,pfscan_Ubiquitin_supergroup	-	no_errors	DDI1	HGNC	ENSG00000170967				115	0	0	47	22	31.8841
LOC643733	0	genome.wustl.edu	37	11	104778203	104778203	+	RNA	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	104778203	104778203	A	G	SNP	LOC643733	ENST00000531091	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.053	-	-	-	no_errors	RP11-693N9.2	Clone_based_vega_gene	ENSG00000235505				13	0	0	15	5	25
CASP4	0	genome.wustl.edu	37	11	104820474	104820474	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	104820474	104820474	T	C	SNP	CASP4	ENST00000444739	human	ensembl	74_37	-1	known	missense	c.577	p.T193A	0.003	pfam_Pept_C14_caspase,smart_Pept_C14A_p45_core,pirsf_Caspase_IL-1_beta,pfscan_Pept_C14_ICE_p20	pfam_Pept_C14_caspase,pfam_CARD,superfamily_DEATH-like_dom,smart_CARD,smart_Pept_C14A_p45_core,pirsf_Caspase_IL-1_beta,pfscan_CARD,pfscan_Pept_C14_p10,pfscan_Pept_C14_ICE_p20,prints_Pept_C14A_p45_core	-	no_errors	CASP4	HGNC	ENSG00000196954				138	0	0	72	12	14.2857
ALKBH8	0	genome.wustl.edu	37	11	107403026	107403026	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	107403026	107403026	C	A	SNP	ALKBH8	ENST00000417449	human	ensembl	74_37	-1	known	missense	c.887	p.G296V	1.000	pfam_Oxoglu/Fe-dep_dioxygenase	pfam_Methyltransf_11,pfam_AlkB_hom8_N,pfam_Oxoglu/Fe-dep_dioxygenase,pfam_Methyltransferase-rel	-	no_errors	ALKBH8	HGNC	ENSG00000137760				57	0	0	32	9	21.9512
ALKBH8	0	genome.wustl.edu	37	11	107403094	107403094	+	Silent	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	107403094	107403094	C	T	SNP	ALKBH8	ENST00000417449	human	ensembl	74_37	-1	known	silent	c.819	p.V273	0.993	pfam_Oxoglu/Fe-dep_dioxygenase	pfam_Methyltransf_11,pfam_AlkB_hom8_N,pfam_Oxoglu/Fe-dep_dioxygenase,pfam_Methyltransferase-rel	-	no_errors	ALKBH8	HGNC	ENSG00000137760				94	0	0	64	5	7.24638
CTR9	0	genome.wustl.edu	37	11	10785222	10785222	+	Silent	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	10785222	10785222	T	C	SNP	CTR9	ENST00000361367	human	ensembl	74_37	+1	known	silent	c.990	p.Y330	1.000	smart_TPR_repeat,pfscan_TPR-contain_dom	pfam_TPR_1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	CTR9	HGNC	ENSG00000198730				121	0	0	92	5	5.15464
NPAT	0	genome.wustl.edu	37	11	108044308	108044308	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	108044308	108044308	G	A	SNP	NPAT	ENST00000278612	human	ensembl	74_37	-1	known	missense	c.1403	p.A468V	0.430	NULL	smart_LisH_dimerisation,pfscan_LisH_dimerisation	-	no_errors	NPAT	HGNC	ENSG00000149308				383	0	0	218	76	25.8503
ATM	0	genome.wustl.edu	37	11	108098363	108098363	+	Silent	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	108098363	108098363	A	G	SNP	ATM	ENST00000278616	human	ensembl	74_37	+1	known	silent	c.12	p.V4	1.000	NULL	pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,pfam_TAN,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	ATM	HGNC	ENSG00000149311				129	0	0	80	30	27.2727
ATM	0	genome.wustl.edu	37	11	108168081	108168081	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	108168081	108168081	A	G	SNP	ATM	ENST00000278616	human	ensembl	74_37	+1	known	missense	c.4977	p.I1659M	0.998	superfamily_ARM-type_fold	pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,pfam_TAN,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	ATM	HGNC	ENSG00000149311				117	0	0	66	14	17.5
MUC2	0	genome.wustl.edu	37	11	1096499	1096499	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	1096499	1096499	G	A	SNP	MUC2	ENST00000441003	human	ensembl	74_37	+1	known	missense	c.6524	p.R2175H	0.916	pfam_VWF_type-D,smart_VWF_type-D	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,superfamily_Prot_inh_PMP,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_C	-	no_errors	MUC2	HGNC	ENSG00000198788				103	1	0.961538	72	6	7.69231
POU2AF1	0	genome.wustl.edu	37	11	111228205	111228205	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	111228205	111228205	T	C	SNP	POU2AF1	ENST00000393067	human	ensembl	74_37	-1	known	missense	c.421	p.T141A	1.000	pfam_PD-C2-AF1	pfam_PD-C2-AF1	-	no_errors	POU2AF1	HGNC	ENSG00000110777				99	0	0	66	4	5.71429
C11orf88	0	genome.wustl.edu	37	11	111385697	111385697	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	111385697	111385697	G	A	SNP	C11orf88	ENST00000529167	human	ensembl	74_37	+1	known	missense	c.188	p.R63H	0.995	NULL	NULL	-	no_errors	C11orf88	HGNC	ENSG00000183644				110	0	0	54	24	30.7692
SIK2	0	genome.wustl.edu	37	11	111558769	111558769	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	111558769	111558769	C	T	SNP	SIK2	ENST00000304987	human	ensembl	74_37	+1	known	nonsense	c.361	p.R121*	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Ser/Thr_kinase_SIK1/2,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Ser/Thr_kinase_SIK1/2,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	SIK2	HGNC	ENSG00000170145				137	0	0	76	33	30.2752
PPP2R1B	0	genome.wustl.edu	37	11	111618736	111618736	+	Silent	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	111618736	111618736	A	G	SNP	PPP2R1B	ENST00000311129	human	ensembl	74_37	-1	known	silent	c.1341	p.G447	1.000	superfamily_ARM-type_fold,pfscan_HEAT_type_2	pfam_HEAT,superfamily_ARM-type_fold,pfscan_HEAT_type_2	-	no_errors	PPP2R1B	HGNC	ENSG00000137713				66	0	0	49	16	24.6154
DRD2	0	genome.wustl.edu	37	11	113295190	113295190	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	113295190	113295190	C	T	SNP	DRD2	ENST00000355319	human	ensembl	74_37	-1	known	missense	c.184	p.E62K	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_Dopamine_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_Dopamine_D2_rcpt,prints_GPCR_Rhodpsn,prints_Dopamine_rcpt	-	no_errors	DRD2	HGNC	ENSG00000149295				141	0	0	99	6	5.71429
CADM1	0	genome.wustl.edu	37	11	115110994	115110994	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	115110994	115110994	G	A	SNP	CADM1	ENST00000452722	human	ensembl	74_37	-1	known	missense	c.271	p.P91S	1.000	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,pfam_CD80_C2-set,smart_Ig_sub,smart_Ig_sub2,smart_Neurexin-like,pfscan_Ig-like_dom	-	no_errors	CADM1	HGNC	ENSG00000182985				65	0	0	36	17	32.0755
TAGLN	0	genome.wustl.edu	37	11	117073840	117073840	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	117073840	117073840	G	A	SNP	TAGLN	ENST00000392951	human	ensembl	74_37	+1	known	silent	c.111	p.Q37	1.000	pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	pfam_CH-domain,pfam_Calponin_repeat,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain,pfscan_Calponin_repeat,prints_SM22_calponin	-	no_errors	TAGLN	HGNC	ENSG00000149591				67	0	0	27	14	34.1463
PCSK7	0	genome.wustl.edu	37	11	117090382	117090382	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	117090382	117090382	T	C	SNP	PCSK7	ENST00000320934	human	ensembl	74_37	-1	known	missense	c.1248	p.I416M	0.565	pfam_Peptidase_S8/S53_dom,superfamily_Peptidase_S8/S53_dom,prints_Peptidase_S8_subtilisin-rel	pfam_Peptidase_S8/S53_dom,pfam_PrprotnconvertsP,superfamily_Peptidase_S8/S53_dom,superfamily_Galactose-bd-like,superfamily_Prot_inh_propept,prints_Peptidase_S8_subtilisin-rel	-	no_errors	PCSK7	HGNC	ENSG00000160613				106	0	0	57	24	29.6296
CEP164	0	genome.wustl.edu	37	11	117266307	117266307	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	117266307	117266307	G	A	SNP	CEP164	ENST00000278935	human	ensembl	74_37	+1	known	silent	c.2958	p.E986	1.000	NULL	superfamily_WW_dom,smart_WW_dom,pfscan_WW_dom	-	no_errors	CEP164	HGNC	ENSG00000110274				71	0	0	43	10	18.8679
BCL9L	0	genome.wustl.edu	37	11	118770905	118770905	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	118770905	118770905	T	C	SNP	BCL9L	ENST00000334801	human	ensembl	74_37	-1	known	missense	c.3127	p.T1043A	0.871	NULL	pfam_BCL9_beta-catenin-bd_dom	-	no_errors	BCL9L	HGNC	ENSG00000186174				60	0	0	22	10	31.25
HYOU1	0	genome.wustl.edu	37	11	118925262	118925262	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	118925262	118925262	C	T	SNP	HYOU1	ENST00000404233	human	ensembl	74_37	-1	known	missense	c.622	p.A208T	1.000	pfam_Hsp_70_fam,pfam_MreB_Mrl	pfam_Hsp_70_fam,pfam_MreB_Mrl,prints_Hsp_70_fam	-	no_errors	HYOU1	HGNC	ENSG00000149428				148	0	0	88	37	29.6
DPAGT1	0	genome.wustl.edu	37	11	118971584	118971584	+	Nonstop_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	118971584	118971584	A	G	SNP	DPAGT1	ENST00000414373	human	ensembl	74_37	-1	known	nonstop	c.286	p.*96R	0.000	NULL	NULL	-	no_errors	DPAGT1	HGNC	ENSG00000172269				115	0	0	50	33	39.759
HINFP	0	genome.wustl.edu	37	11	119003653	119003653	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	119003653	119003653	T	C	SNP	HINFP	ENST00000350777	human	ensembl	74_37	+1	known	missense	c.955	p.C319R	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	HINFP	HGNC	ENSG00000172273				201	0	0	145	13	8.22785
POU2F3	0	genome.wustl.edu	37	11	120175748	120175748	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	120175748	120175748	C	T	SNP	POU2F3	ENST00000260264	human	ensembl	74_37	+1	known	missense	c.460	p.H154Y	0.971	NULL	pfam_POU_specific,pfam_Homeobox_dom,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,smart_POU_specific,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_POU_specific,prints_POU,prints_TF_octamer	-	no_errors	POU2F3	HGNC	ENSG00000137709				154	0	0	127	9	6.61765
ARHGEF12	0	genome.wustl.edu	37	11	120343776	120343776	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	120343776	120343776	G	A	SNP	ARHGEF12	ENST00000356641	human	ensembl	74_37	+1	known	silent	c.2916	p.Q972	1.000	superfamily_DH-domain	pfam_RGS-like_dom,pfam_DH-domain,pfam_PDZ,superfamily_Regulat_G_prot_signal_superfam,superfamily_DH-domain,superfamily_PDZ,smart_PDZ,smart_DH-domain,smart_Pleckstrin_homology,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	ARHGEF12	HGNC	ENSG00000196914				392	1	0.254453	266	19	6.66667
TECTA	0	genome.wustl.edu	37	11	120973430	120973430	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	120973430	120973430	A	G	SNP	TECTA	ENST00000264037	human	ensembl	74_37	+1	known	missense	c.56	p.Q19R	0.922	NULL	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_ZP_dom,pfam_Nidogen_extracell_dom,pfam_TIL_dom,superfamily_TIL_dom,smart_Nidogen_extracell_dom,smart_VWC_out,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_EG-like_dom,smart_ZP_dom,pfscan_ZP_dom	-	no_errors	TECTA	HGNC	ENSG00000109927				345	1	0.289017	217	20	8.43882
MICAL2	0	genome.wustl.edu	37	11	12237834	12237834	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	12237834	12237834	C	T	SNP	MICAL2	ENST00000256194	human	ensembl	74_37	+1	known	nonsense	c.916	p.Q306*	1.000	NULL	pfam_CH-domain,pfam_CAMSAP_CH,pfam_Znf_LIM,pfam_mOase_FAD-bd,pfam_FAD_bind_dom,superfamily_CH-domain,smart_CH-domain,smart_Znf_LIM,pfscan_CH-domain,pfscan_Znf_LIM,prints_Rng_hydrolase-like	-	no_errors	MICAL2	HGNC	ENSG00000133816				169	0	0	140	10	6.66667
C11orf63	0	genome.wustl.edu	37	11	122774696	122774696	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	122774696	122774696	G	T	SNP	C11orf63	ENST00000227349	human	ensembl	74_37	+1	known	missense	c.408	p.K136N	0.293	NULL	NULL	-	no_errors	C11orf63	HGNC	ENSG00000109944				419	2	0.475059	219	90	29.1262
HSPA8	0	genome.wustl.edu	37	11	122931470	122931470	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	122931470	122931470	G	C	SNP	HSPA8	ENST00000534624	human	ensembl	74_37	-1	known	missense	c.242	p.A81G	0.980	pfam_Hsp_70_fam	pfam_Hsp_70_fam,pfam_MreB_Mrl,prints_Hsp_70_fam	-	no_errors	HSPA8	HGNC	ENSG00000109971				160	0	0	68	22	24.4444
OR6M1	0	genome.wustl.edu	37	11	123676424	123676424	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	123676424	123676424	T	C	SNP	OR6M1	ENST00000309154	human	ensembl	74_37	-1	known	missense	c.634	p.T212A	0.001	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR6M1	HGNC	ENSG00000196099				79	0	0	52	7	11.8644
OR4D5	0	genome.wustl.edu	37	11	123810556	123810556	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	123810556	123810556	C	T	SNP	OR4D5	ENST00000307033	human	ensembl	74_37	+1	known	missense	c.233	p.A78V	0.017	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4D5	HGNC	ENSG00000171014				278	0	0	124	54	30.3371
OR10S1	0	genome.wustl.edu	37	11	123847770	123847770	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	123847770	123847770	T	C	SNP	OR10S1	ENST00000531945	human	ensembl	74_37	-1	known	missense	c.629	p.E210G	0.842	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR10S1	HGNC	ENSG00000196248				124	1	0.8	49	23	31.9444
OR8D1	0	genome.wustl.edu	37	11	124180293	124180293	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	124180293	124180293	C	T	SNP	OR8D1	ENST00000357821	human	ensembl	74_37	-1	known	missense	c.370	p.V124I	0.047	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR8D1	HGNC	ENSG00000196341				54	0	0	24	12	33.3333
PANX3	0	genome.wustl.edu	37	11	124487357	124487357	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	124487357	124487357	C	T	SNP	PANX3	ENST00000284288	human	ensembl	74_37	+1	known	missense	c.512	p.P171L	1.000	pfam_Innexin,pfscan_Innexin	pfam_Innexin,pfscan_Innexin	-	no_errors	PANX3	HGNC	ENSG00000154143				154	0	0	87	34	28.0992
ESAM	0	genome.wustl.edu	37	11	124624154	124624154	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	124624154	124624154	G	A	SNP	ESAM	ENST00000278927	human	ensembl	74_37	-1	known	silent	c.813	p.Y271	0.754	NULL	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	ESAM	HGNC	ENSG00000149564				71	0	0	35	22	38.5965
RPUSD4	0	genome.wustl.edu	37	11	126081527	126081527	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	126081527	126081527	C	A	SNP	RPUSD4	ENST00000298317	human	ensembl	74_37	-1	known	missense	c.7	p.A3S	0.918	NULL	pfam_PsdUridine_synth_RsuA/RluD,superfamily_PsdUridine_synth_cat_dom	-	no_errors	RPUSD4	HGNC	ENSG00000165526				179	1	0.555556	75	32	29.9065
KIRREL3	0	genome.wustl.edu	37	11	126396434	126396434	+	Silent	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	126396434	126396434	T	C	SNP	KIRREL3	ENST00000525144	human	ensembl	74_37	-1	known	silent	c.282	p.S94	0.997	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_CD80_C2-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	KIRREL3	HGNC	ENSG00000149571				41	0	0	18	11	37.931
ETS1	0	genome.wustl.edu	37	11	128350194	128350194	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	128350194	128350194	G	T	SNP	ETS1	ENST00000392668	human	ensembl	74_37	-1	known	missense	c.1015	p.L339M	1.000	pirsf_Transform_prot_C-ets	pfam_Ets_dom,pfam_Pointed_dom,superfamily_SAM/pointed,smart_Pointed_dom,smart_Ets_dom,pirsf_Transform_prot_C-ets,pfscan_Ets_dom,prints_Ets_dom	-	no_errors	ETS1	HGNC	ENSG00000134954				159	1	0.625	65	26	28.5714
TOLLIP	0	genome.wustl.edu	37	11	1298340	1298340	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	1298340	1298340	C	T	SNP	TOLLIP	ENST00000317204	human	ensembl	74_37	-1	known	missense	c.754	p.V252M	1.000	pfam_CUE,superfamily_UBA-like,smart_CUE,pfscan_CUE	pfam_CUE,pfam_C2_dom,superfamily_C2_dom,superfamily_UBA-like,smart_C2_dom,smart_CUE,pfscan_CUE	-	no_errors	TOLLIP	HGNC	ENSG00000078902				164	0	0	77	36	31.8584
ADAMTS8	0	genome.wustl.edu	37	11	130281492	130281492	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	130281492	130281492	C	T	SNP	ADAMTS8	ENST00000257359	human	ensembl	74_37	-1	known	missense	c.1570	p.V524M	0.380	superfamily_Thrombospondin_1_rpt	pfam_ADAM_spacer1,pfam_Peptidase_M12B_N,pfam_Peptidase_M12B,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_ADAM_Cys-rich,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Pept_M12B_ADAM-TS8,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS8	HGNC	ENSG00000134917				101	0	0	35	17	32.6923
IGSF9B	0	genome.wustl.edu	37	11	133790518	133790518	+	Silent	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	133790518	133790518	C	T	SNP	IGSF9B	ENST00000321016	human	ensembl	74_37	-1	known	silent	c.3102	p.G1034	0.629	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	IGSF9B	HGNC	ENSG00000080854				162	0	0	93	45	32.6087
CALCA	0	genome.wustl.edu	37	11	14990515	14990515	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	14990515	14990515	C	T	SNP	CALCA	ENST00000331587	human	ensembl	74_37	-1	known	missense	c.256	p.G86S	0.992	pfam_Procalcitonin/adrenomedullin,smart_Calcitonin_peptide-like,prints_Calcitonin	pfam_Procalcitonin/adrenomedullin,smart_Calcitonin_peptide-like,prints_Calcitonin	-	no_errors	CALCA	HGNC	ENSG00000110680				160	0	0	87	40	31.4961
INSC	0	genome.wustl.edu	37	11	15212353	15212353	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	15212353	15212353	T	C	SNP	INSC	ENST00000379554	human	ensembl	74_37	+1	known	missense	c.827	p.I276T	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold,smart_Armadillo	-	no_errors	INSC	HGNC	ENSG00000188487				289	0	0	179	43	19.3694
SOX6	0	genome.wustl.edu	37	11	16077437	16077437	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	16077437	16077437	G	A	SNP	SOX6	ENST00000352083	human	ensembl	74_37	-1	known	missense	c.1112	p.A371V	1.000	NULL	pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	-	no_errors	SOX6	HGNC	ENSG00000110693				124	0	0	57	32	35.9551
PLEKHA7	0	genome.wustl.edu	37	11	16816142	16816142	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	16816142	16816142	G	A	SNP	PLEKHA7	ENST00000448080	human	ensembl	74_37	-1	known	nonsense	c.2638	p.R880*	0.783	NULL	pfam_Pleckstrin_homology,pfam_WW_dom,superfamily_WW_dom,smart_WW_dom,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_WW_dom	-	no_errors	PLEKHA7	HGNC	ENSG00000166689				226	0	0	109	52	32.2981
PIK3C2A	0	genome.wustl.edu	37	11	17150966	17150966	+	Silent	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	17150966	17150966	A	G	SNP	PIK3C2A	ENST00000265970	human	ensembl	74_37	-1	known	silent	c.2280	p.L760	1.000	pfam_PI3K_C2_dom,superfamily_C2_dom,smart_PI3K_C2_dom,smart_C2_dom	pfam_PI3/4_kinase_cat_dom,pfam_PInositide-3_kin_accessory_dom,pfam_PI3K_C2_dom,pfam_PI3K_Ras-bd_dom,pfam_Phox,pfam_C2_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_dom,superfamily_Phox,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,smart_Phox,pfscan_C2_dom,pfscan_Phox,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3C2A	HGNC	ENSG00000011405				136	0	0	80	30	27.2727
KCNJ11	0	genome.wustl.edu	37	11	17408964	17408964	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	17408964	17408964	G	A	SNP	KCNJ11	ENST00000339994	human	ensembl	74_37	-1	known	silent	c.675	p.S225	1.000	pfam_K_chnl_inward-rec_Kir,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir	pfam_K_chnl_inward-rec_Kir,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir6.2	-	no_errors	KCNJ11	HGNC	ENSG00000187486				107	0	0	84	9	9.67742
ABCC8	0	genome.wustl.edu	37	11	17428579	17428579	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	17428579	17428579	G	A	SNP	ABCC8	ENST00000527905	human	ensembl	74_37	-1	known	missense	c.2888	p.P963L	0.000	NULL	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_P-loop_NTPase,superfamily_ABC1_TM_dom,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom,prints_Sulphorea_rcpt,prints_Surea_rcpt-1	-	no_errors	ABCC8	HGNC	ENSG00000006071				148	0	0	81	40	33.0579
USH1C	0	genome.wustl.edu	37	11	17530964	17530964	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	17530964	17530964	T	C	SNP	USH1C	ENST00000005226	human	ensembl	74_37	-1	known	missense	c.1952	p.N651S	0.974	NULL	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	USH1C	HGNC	ENSG00000006611				161	0	0	101	6	5.60748
KCNC1	0	genome.wustl.edu	37	11	17793376	17793376	+	Silent	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	17793376	17793376	T	C	SNP	KCNC1	ENST00000265969	human	ensembl	74_37	+1	known	silent	c.735	p.L245	0.998	NULL	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv3,prints_K_chnl_volt-dep_Kv3.1,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv9	-	no_errors	KCNC1	HGNC	ENSG00000129159				256	0	0	169	20	10.582
KCNC1	0	genome.wustl.edu	37	11	17793706	17793706	+	Silent	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	17793706	17793706	C	T	SNP	KCNC1	ENST00000265969	human	ensembl	74_37	+1	known	silent	c.1065	p.G355	0.569	pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom,prints_K_chnl,prints_K_chnl_volt-dep_Kv	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv3,prints_K_chnl_volt-dep_Kv3.1,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv9	-	no_errors	KCNC1	HGNC	ENSG00000129159				66	0	0	25	13	34.2105
MRGPRX4	0	genome.wustl.edu	37	11	18195607	18195607	+	Silent	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	18195607	18195607	C	T	SNP	MRGPRX4	ENST00000314254	human	ensembl	74_37	+1	known	silent	c.804	p.N268	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	-	no_errors	MRGPRX4	HGNC	ENSG00000179817				231	0	0	104	45	30.2013
TNNI2	0	genome.wustl.edu	37	11	1861658	1861658	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	1861658	1861658	G	A	SNP	TNNI2	ENST00000252898	human	ensembl	74_37	+1	known	missense	c.41	p.R14H	1.000	NULL	pfam_Troponin	-	no_errors	TNNI2	HGNC	ENSG00000130598				39	0	0	16	7	30.4348
NAV2	0	genome.wustl.edu	37	11	19954827	19954827	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	19954827	19954827	C	T	SNP	NAV2	ENST00000396087	human	ensembl	74_37	+1	known	missense	c.1106	p.S369L	1.000	NULL	pfam_CH-domain,superfamily_CH-domain,superfamily_P-loop_NTPase,smart_CH-domain,smart_AAA+_ATPase,pfscan_CH-domain	-	no_errors	NAV2	HGNC	ENSG00000166833				497	0	0	234	108	31.5789
DBX1	0	genome.wustl.edu	37	11	20177851	20177851	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	20177851	20177851	G	A	SNP	DBX1	ENST00000227256	human	ensembl	74_37	-1	known	missense	c.1058	p.A353V	0.976	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	-	no_errors	DBX1	HGNC	ENSG00000109851				178	0	0	71	84	54.1935
ANO5	0	genome.wustl.edu	37	11	22284591	22284591	+	Splice_Site	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	22284591	22284591	T	C	SNP	ANO5	ENST00000324559	human	ensembl	74_37	+1	known	splice_site	c.1898+2	e17+2	1.000	-	-	-	no_errors	ANO5	HGNC	ENSG00000171714				105	0	0	76	13	14.6067
ANO5	0	genome.wustl.edu	37	11	22294393	22294393	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	22294393	22294393	T	C	SNP	ANO5	ENST00000324559	human	ensembl	74_37	+1	known	missense	c.2093	p.L698P	0.998	pfam_Anoctamin	pfam_Anoctamin	-	no_errors	ANO5	HGNC	ENSG00000171714				157	0	0	103	13	11.2069
TSSC4	0	genome.wustl.edu	37	11	2424406	2424406	+	Silent	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	2424406	2424406	C	T	SNP	TSSC4	ENST00000333256	human	ensembl	74_37	+1	known	silent	c.543	p.T181	0.012	NULL	NULL	-	no_errors	TSSC4	HGNC	ENSG00000184281				59	0	0	31	23	42.5926
TRPM5	0	genome.wustl.edu	37	11	2427344	2427344	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	2427344	2427344	G	A	SNP	TRPM5	ENST00000533060	human	ensembl	74_37	-1	novel	silent	c.3253	p.L1085	0.000	NULL	superfamily_Ankyrin_rpt-contain_dom	-	no_errors	TRPM5	HGNC	ENSG00000070985				78	0	0	49	4	7.54717
KIF18A	0	genome.wustl.edu	37	11	28104461	28104461	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	28104461	28104461	T	C	SNP	KIF18A	ENST00000263181	human	ensembl	74_37	-1	known	missense	c.1204	p.N402D	0.391	superfamily_P-loop_NTPase	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF18A	HGNC	ENSG00000121621				84	0	0	46	14	23.3333
MPPED2	0	genome.wustl.edu	37	11	30435828	30435828	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	30435828	30435828	G	A	SNP	MPPED2	ENST00000358117	human	ensembl	74_37	-1	known	missense	c.713	p.T238M	1.000	pfam_PEstase_dom	pfam_PEstase_dom	-	no_errors	MPPED2	HGNC	ENSG00000066382				94	0	0	53	21	28.3784
MPPED2	0	genome.wustl.edu	37	11	30517060	30517060	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	30517060	30517060	G	A	SNP	MPPED2	ENST00000358117	human	ensembl	74_37	-1	known	missense	c.319	p.P107S	1.000	pfam_PEstase_dom	pfam_PEstase_dom	-	no_errors	MPPED2	HGNC	ENSG00000066382				91	0	0	45	21	31.8182
ELP4	0	genome.wustl.edu	37	11	31616422	31616422	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	31616422	31616422	C	T	SNP	ELP4	ENST00000395934	human	ensembl	74_37	+1	known	missense	c.487	p.R163C	1.000	pfam_Elongator_complex_protein_4	pfam_Elongator_complex_protein_4,superfamily_P-loop_NTPase	-	no_errors	ELP4	HGNC	ENSG00000109911				57	0	0	34	9	20.9302
CSTF3	0	genome.wustl.edu	37	11	33117933	33117933	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	33117933	33117933	T	A	SNP	CSTF3	ENST00000323959	human	ensembl	74_37	-1	known	missense	c.1294	p.I432F	1.000	pfam_Suf,smart_HAT	pfam_Suf,smart_HAT	-	no_errors	CSTF3	HGNC	ENSG00000176102				148	1	0.671141	133	9	6.33803
HIPK3	0	genome.wustl.edu	37	11	33369426	33369426	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	33369426	33369426	A	T	SNP	HIPK3	ENST00000303296	human	ensembl	74_37	+1	known	missense	c.2173	p.N725Y	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	HIPK3	HGNC	ENSG00000110422				133	0	0	59	28	32.1839
NAT10	0	genome.wustl.edu	37	11	34130297	34130297	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	34130297	34130297	A	G	SNP	NAT10	ENST00000257829	human	ensembl	74_37	+1	known	missense	c.117	p.I39M	0.650	NULL	pfam_Helicase_dom,pfam_DUF1726,superfamily_Acyl_CoA_acyltransferase,superfamily_P-loop_NTPase,pfscan_GNAT_dom	-	no_errors	NAT10	HGNC	ENSG00000135372				129	0	0	89	11	11
ABTB2	0	genome.wustl.edu	37	11	34194790	34194790	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	34194790	34194790	G	A	SNP	ABTB2	ENST00000435224	human	ensembl	74_37	-1	known	missense	c.1309	p.R437C	1.000	superfamily_Histone-fold	pfam_BTB_POZ,pfam_Ankyrin_rpt,superfamily_Histone-fold,superfamily_BTB/POZ_fold,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_BTB/POZ-like,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_BTB/POZ-like	-	no_errors	ABTB2	HGNC	ENSG00000166016				38	0	0	23	9	28.125
TSSC2	0	genome.wustl.edu	37	11	3424867	3424867	+	RNA	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	3424867	3424867	G	A	SNP	TSSC2	ENST00000533775	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.845	-	-	-	no_errors	TSSC2	HGNC	ENSG00000223756				209	0	0	159	10	5.91716
TRIM44	0	genome.wustl.edu	37	11	35685113	35685113	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	35685113	35685113	G	A	SNP	TRIM44	ENST00000299413	human	ensembl	74_37	+1	known	missense	c.454	p.E152K	0.652	NULL	pfam_Znf_B-box,smart_Znf_B-box,pfscan_Znf_B-box	-	no_errors	TRIM44	HGNC	ENSG00000166326				59	0	0	21	11	34.375
TRIM44	0	genome.wustl.edu	37	11	35827994	35827994	+	RNA	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	35827994	35827994	T	C	SNP	TRIM44	ENST00000532066	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.991	-	-	-	no_errors	TRIM44	HGNC	ENSG00000166326				139	0	0	67	41	37.963
ALKBH3	0	genome.wustl.edu	37	11	43908177	43908177	+	Silent	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	43908177	43908177	C	T	SNP	ALKBH3	ENST00000302708	human	ensembl	74_37	+1	known	silent	c.240	p.I80	1.000	NULL	pfam_Oxoglu/Fe-dep_dioxygenase	-	no_errors	ALKBH3	HGNC	ENSG00000166199				135	0	0	88	10	10.2041
EXT2	0	genome.wustl.edu	37	11	44255775	44255775	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	44255775	44255775	G	A	SNP	EXT2	ENST00000395673	human	ensembl	74_37	+1	known	silent	c.2016	p.T672	0.952	pfam_HexNAc_Trfase_a	pfam_HexNAc_Trfase_a,pfam_Exostosin	-	no_errors	EXT2	HGNC	ENSG00000151348				84	0	0	30	11	26.8293
OR52M1	0	genome.wustl.edu	37	11	4567047	4567047	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	4567047	4567047	G	A	SNP	OR52M1	ENST00000360213	human	ensembl	74_37	+1	known	silent	c.627	p.V209	0.004	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR52M1	HGNC	ENSG00000197790				373	0	0	201	70	25.8303
GYLTL1B	0	genome.wustl.edu	37	11	45947886	45947886	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	45947886	45947886	G	A	SNP	GYLTL1B	ENST00000325468	human	ensembl	74_37	+1	known	silent	c.996	p.A332	0.669	pfam_Glyco_trans_8	pfam_Glyco_trans_8	-	no_errors	GYLTL1B	HGNC	ENSG00000165905				202	0	0	98	48	32.8767
TRIM68	0	genome.wustl.edu	37	11	4621976	4621976	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	4621976	4621976	T	C	SNP	TRIM68	ENST00000300747	human	ensembl	74_37	-1	known	missense	c.988	p.T330A	0.618	superfamily_ConA-like_lec_gl_sf,smart_PRY,prints_Butyrophylin,pfscan_B30.2/SPRY	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl_sf,smart_Znf_RING,smart_Znf_B-box,smart_PRY,smart_SPla/RYanodine_receptor_subgr,prints_Butyrophylin,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM68	HGNC	ENSG00000167333				80	0	0	61	4	6.15385
DGKZ	0	genome.wustl.edu	37	11	46394198	46394198	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	46394198	46394198	C	T	SNP	DGKZ	ENST00000454345	human	ensembl	74_37	+1	known	missense	c.1606	p.R536W	1.000	pfam_Diacylglycerol_kinase_cat_dom,smart_Diacylglycerol_kinase_cat_dom	pfam_Diacylglycerol_kin_accessory,pfam_Diacylglycerol_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_Ankyrin_rpt-contain_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Diacylglycerol_kinase_cat_dom,smart_Diacylglycerol_kin_accessory,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	DGKZ	HGNC	ENSG00000149091				100	0	0	36	30	45.4545
CKAP5	0	genome.wustl.edu	37	11	46829614	46829614	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	46829614	46829614	G	A	SNP	CKAP5	ENST00000415402	human	ensembl	74_37	-1	known	silent	c.945	p.G315	0.999	pfam_CLASP_N_dom,superfamily_ARM-type_fold	pfam_CLASP_N_dom,pfam_HEAT,superfamily_ARM-type_fold,superfamily_Homing_endonucl,pfscan_HEAT_type_2	-	no_errors	CKAP5	HGNC	ENSG00000175216				609	0	0	334	145	30.2714
ARFGAP2	0	genome.wustl.edu	37	11	47198140	47198140	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	47198140	47198140	T	C	SNP	ARFGAP2	ENST00000524782	human	ensembl	74_37	-1	known	missense	c.118	p.T40A	1.000	pfam_ArfGAP,smart_ArfGAP,pfscan_ArfGAP,prints_ArfGAP	pfam_ArfGAP,smart_ArfGAP,pfscan_ArfGAP,prints_ArfGAP	-	no_errors	ARFGAP2	HGNC	ENSG00000149182				95	0	0	66	7	9.58904
C1QTNF4	0	genome.wustl.edu	37	11	47612348	47612348	+	Silent	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	47612348	47612348	C	T	SNP	C1QTNF4	ENST00000302514	human	ensembl	74_37	-1	known	silent	c.15	p.L5	1.000	NULL	pfam_C1q,superfamily_Tumour_necrosis_fac-like_dom,smart_C1q,prints_C1q,pfscan_C1q	-	no_errors	C1QTNF4	HGNC	ENSG00000172247				16	0	0	4	7	63.6364
MTCH2	0	genome.wustl.edu	37	11	47653245	47653245	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	47653245	47653245	C	T	SNP	MTCH2	ENST00000302503	human	ensembl	74_37	-1	known	missense	c.388	p.A130T	1.000	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	-	no_errors	MTCH2	HGNC	ENSG00000109919				122	0	0	68	29	29.8969
AGBL2	0	genome.wustl.edu	37	11	47712295	47712295	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	47712295	47712295	T	C	SNP	AGBL2	ENST00000357610	human	ensembl	74_37	-1	known	missense	c.964	p.I322V	1.000	NULL	pfam_Peptidase_M14	-	no_errors	AGBL2	HGNC	ENSG00000165923				221	0	0	115	59	33.908
PTPRJ	0	genome.wustl.edu	37	11	48158680	48158680	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	48158680	48158680	T	C	SNP	PTPRJ	ENST00000418331	human	ensembl	74_37	+1	known	missense	c.1999	p.S667P	0.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRJ	HGNC	ENSG00000149177				244	0	0	114	66	36.6667
OR4B1	0	genome.wustl.edu	37	11	48238713	48238713	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	48238713	48238713	T	C	SNP	OR4B1	ENST00000309562	human	ensembl	74_37	+1	known	missense	c.352	p.Y118H	0.989	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4B1	HGNC	ENSG00000175619				237	0	0	116	38	24.6753
FOLH1	0	genome.wustl.edu	37	11	49204779	49204779	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	49204779	49204779	C	T	SNP	FOLH1	ENST00000256999	human	ensembl	74_37	-1	known	missense	c.842	p.R281H	0.843	NULL	pfam_TFR-like_dimer_dom,pfam_Protease-assoc_domain,pfam_Peptidase_M28,superfamily_TFR-like_dimer_dom	-	no_errors	FOLH1	HGNC	ENSG00000086205				112	0	0	85	9	9.57447
FOLH1	0	genome.wustl.edu	37	11	49204790	49204790	+	Silent	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	49204790	49204790	A	G	SNP	FOLH1	ENST00000256999	human	ensembl	74_37	-1	known	silent	c.831	p.Y277	1.000	NULL	pfam_TFR-like_dimer_dom,pfam_Protease-assoc_domain,pfam_Peptidase_M28,superfamily_TFR-like_dimer_dom	-	no_errors	FOLH1	HGNC	ENSG00000086205				98	0	0	71	12	14.4578
TRIM48	0	genome.wustl.edu	37	11	55035844	55035844	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	55035844	55035844	T	C	SNP	TRIM48	ENST00000417545	human	ensembl	74_37	+1	known	missense	c.574	p.Y192H	0.183	NULL	pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,smart_Znf_RING,smart_Znf_B-box,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM48	HGNC	ENSG00000150244				209	1	0.47619	146	23	13.6095
OR4P4	0	genome.wustl.edu	37	11	55406147	55406147	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	55406147	55406147	T	G	SNP	OR4P4	ENST00000314612	human	ensembl	74_37	+1	known	missense	c.314	p.F105C	0.088	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4P4	HGNC	ENSG00000181927				130	0	0	101	9	8.18182
OR4C6	0	genome.wustl.edu	37	11	55432731	55432731	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	55432731	55432731	T	A	SNP	OR4C6	ENST00000314259	human	ensembl	74_37	+1	known	missense	c.89	p.L30H	0.069	prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4C6	HGNC	ENSG00000181903				333	0	0	222	19	7.88382
OR8J3	0	genome.wustl.edu	37	11	55905019	55905019	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	55905019	55905019	A	G	SNP	OR8J3	ENST00000301529	human	ensembl	74_37	-1	known	missense	c.176	p.M59T	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR8J3	HGNC	ENSG00000167822				277	1	0.359712	144	56	28
TRIM6-TRIM34	0	genome.wustl.edu	37	11	5624748	5624748	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	5624748	5624748	G	A	SNP	TRIM6-TRIM34	ENST00000354852	human	ensembl	74_37	+1	known	missense	c.290	p.R97Q	0.731	NULL	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl_sf,smart_Znf_RING,smart_Znf_B-box,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	TRIM6-TRIM34	HGNC	ENSG00000258588				109	0	0	57	15	20.8333
OR5M10	0	genome.wustl.edu	37	11	56344778	56344778	+	Silent	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	56344778	56344778	A	G	SNP	OR5M10	ENST00000526812	human	ensembl	74_37	-1	known	silent	c.420	p.I140	0.002	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR5M10	HGNC	ENSG00000254834				177	0	0	89	31	25.8333
OR9G4	0	genome.wustl.edu	37	11	56510841	56510841	+	Silent	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	56510841	56510841	A	G	SNP	OR9G4	ENST00000302957	human	ensembl	74_37	-1	known	silent	c.447	p.G149	0.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR9G4	HGNC	ENSG00000172457				287	2	0.692042	139	55	28.3505
LRRC55	0	genome.wustl.edu	37	11	56950045	56950045	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	56950045	56950045	G	T	SNP	LRRC55	ENST00000497933	human	ensembl	74_37	+1	known	missense	c.678	p.E226D	0.812	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	LRRC55	HGNC	ENSG00000183908				242	0	0	126	56	30.7692
LRRC55	0	genome.wustl.edu	37	11	56950151	56950151	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	56950151	56950151	A	G	SNP	LRRC55	ENST00000497933	human	ensembl	74_37	+1	known	missense	c.784	p.T262A	0.976	smart_Cys-rich_flank_reg_C	pfam_Leu-rich_rpt,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	LRRC55	HGNC	ENSG00000183908				193	1	0.515464	102	33	24.4444
PRG3	0	genome.wustl.edu	37	11	57146978	57146978	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	57146978	57146978	C	T	SNP	PRG3	ENST00000287143	human	ensembl	74_37	-1	known	missense	c.364	p.A122T	0.000	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin,prints_Eosinophil_major_basic	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin,prints_Eosinophil_major_basic	-	no_errors	PRG3	HGNC	ENSG00000156575				396	0	0	184	90	32.8467
OR52N1	0	genome.wustl.edu	37	11	5809670	5809670	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	5809670	5809670	A	G	SNP	OR52N1	ENST00000317078	human	ensembl	74_37	-1	known	missense	c.377	p.V126A	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	-	no_errors	OR52N1	HGNC	ENSG00000181001				219	0	0	87	39	30.9524
OR5B12	0	genome.wustl.edu	37	11	58207279	58207279	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	58207279	58207279	T	A	SNP	OR5B12	ENST00000302572	human	ensembl	74_37	-1	known	missense	c.346	p.M116L	0.988	pfam_GPCR_Rhodpsn,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	OR5B12	HGNC	ENSG00000172362				200	0	0	116	52	30.9524
DTX4	0	genome.wustl.edu	37	11	58972212	58972212	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	58972212	58972212	A	G	SNP	DTX4	ENST00000227451	human	ensembl	74_37	+1	known	missense	c.1690	p.T564A	1.000	NULL	pfam_WWE-dom,pfam_Znf_C3HC4_RING-type,smart_WWE-dom_subgr,smart_Znf_RING,pfscan_WWE-dom,pfscan_Znf_RING	-	no_errors	DTX4	HGNC	ENSG00000110042				42	0	0	24	6	20
PATL1	0	genome.wustl.edu	37	11	59425112	59425112	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	59425112	59425112	C	T	SNP	PATL1	ENST00000300146	human	ensembl	74_37	-1	known	missense	c.512	p.R171Q	1.000	pfam_Topo_II-assoc_PAT1	pfam_Topo_II-assoc_PAT1	-	no_errors	PATL1	HGNC	ENSG00000166889				150	0	0	65	39	37.5
CD6	0	genome.wustl.edu	37	11	60776004	60776004	+	Splice_Site	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	60776004	60776004	A	G	SNP	CD6	ENST00000313421	human	ensembl	74_37	+1	known	splice_site	c.470-2	e4-2	1.000	-	-	-	no_errors	CD6	HGNC	ENSG00000013725				24	0	0	7	5	41.6667
PHRF1	0	genome.wustl.edu	37	11	608885	608885	+	Silent	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	608885	608885	C	T	SNP	PHRF1	ENST00000264555	human	ensembl	74_37	+1	known	silent	c.3429	p.H1143	0.004	NULL	pfam_Znf_PHD-finger,pfam_Znf_C3HC4_RING-type,superfamily_Znf_FYVE_PHD,smart_Znf_RING,smart_Znf_PHD,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	PHRF1	HGNC	ENSG00000070047				61	0	0	21	14	40
CPSF7	0	genome.wustl.edu	37	11	61179396	61179396	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	61179396	61179396	G	A	SNP	CPSF7	ENST00000340437	human	ensembl	74_37	-1	known	silent	c.1227	p.D409	0.891	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	CPSF7	HGNC	ENSG00000149532				97	0	0	49	19	27.9412
MYRF	0	genome.wustl.edu	37	11	61547022	61547022	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	61547022	61547022	C	T	SNP	MYRF	ENST00000278836	human	ensembl	74_37	+1	known	missense	c.2227	p.P743S	1.000	NULL	pfam_NDT80_DNA-bd_dom,superfamily_p53-like_TF_DNA-bd	-	no_errors	MYRF	HGNC	ENSG00000124920				13	0	0	6	6	50
AHNAK	0	genome.wustl.edu	37	11	62285270	62285270	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	62285270	62285270	T	C	SNP	AHNAK	ENST00000378024	human	ensembl	74_37	-1	known	missense	c.16619	p.D5540G	0.704	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK	HGNC	ENSG00000124942				449	0	0	238	125	34.4353
EEF1G	0	genome.wustl.edu	37	11	62327791	62327791	+	Silent	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	62327791	62327791	T	C	SNP	EEF1G	ENST00000378019	human	ensembl	74_37	-1	known	silent	c.1143	p.E381	1.000	pfam_Transl_elong_EF1_G_con,superfamily_Transl_elong_EF1_G_con,pfscan_Transl_elong_EF1_G_con	pfam_Transl_elong_EF1_G_con,pfam_Glutathione_S-Trfase_N,pfam_GST_C,superfamily_Transl_elong_EF1_G_con,superfamily_Glutathione-S-Trfase_C-like,superfamily_Thioredoxin-like_fold,pfscan_Transl_elong_EF1_G_con	-	no_errors	EEF1G	HGNC	ENSG00000254772				34	0	0	13	9	40.9091
INTS5	0	genome.wustl.edu	37	11	62416494	62416494	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	62416494	62416494	C	T	SNP	INTS5	ENST00000330574	human	ensembl	74_37	-1	known	missense	c.1058	p.G353D	1.000	NULL	NULL	-	no_errors	INTS5	HGNC	ENSG00000185085				200	0	0	156	16	9.30233
SLC22A10	0	genome.wustl.edu	37	11	63066991	63066991	+	Silent	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	63066991	63066991	A	G	SNP	SLC22A10	ENST00000332793	human	ensembl	74_37	+1	known	silent	c.960	p.V320	0.009	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC22A10	HGNC	ENSG00000184999				84	0	0	53	4	7.01754
ATL3	0	genome.wustl.edu	37	11	63426718	63426718	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	63426718	63426718	G	A	SNP	ATL3	ENST00000332645	human	ensembl	74_37	-1	known	missense	c.209	p.A70V	1.000	superfamily_P-loop_NTPase	pfam_Guanylate-bd_N,pfam_Guanylate-bd_C,superfamily_Guanylate-bd_C,superfamily_P-loop_NTPase	-	no_errors	ATL3	HGNC	ENSG00000184743				106	0	0	82	5	5.74713
DNAJC4	0	genome.wustl.edu	37	11	63999943	63999943	+	Silent	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	63999943	63999943	C	T	SNP	DNAJC4	ENST00000321685	human	ensembl	74_37	+1	known	silent	c.222	p.S74	0.997	pfam_DnaJ_domain,superfamily_DnaJ_domain,smart_DnaJ_domain,pfscan_DnaJ_domain,prints_DnaJ_domain	pfam_DnaJ_domain,superfamily_DnaJ_domain,smart_DnaJ_domain,pfscan_DnaJ_domain,prints_DnaJ_domain	-	no_errors	DNAJC4	HGNC	ENSG00000110011				91	0	0	55	5	8.33333
GPR137	0	genome.wustl.edu	37	11	64056707	64056707	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	64056707	64056707	C	A	SNP	GPR137	ENST00000313074	human	ensembl	74_37	+1	known	missense	c.1124	p.P375H	0.032	NULL	NULL	-	no_errors	GPR137	HGNC	ENSG00000173264				278	0	0	154	73	32.1586
SMPD1	0	genome.wustl.edu	37	11	6413196	6413196	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	6413196	6413196	G	A	SNP	SMPD1	ENST00000342245	human	ensembl	74_37	+1	known	missense	c.901	p.V301I	0.652	pfam_PEstase_dom,pirsf_Sphingomy_PDE	pfam_PEstase_dom,superfamily_Saposin-like,smart_SaposinB,pirsf_Sphingomy_PDE,pfscan_SaposinB	-	no_errors	SMPD1	HGNC	ENSG00000166311				161	0	0	79	37	31.8966
HPX	0	genome.wustl.edu	37	11	6453257	6453257	+	RNA	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	6453257	6453257	A	G	SNP	HPX	ENST00000529037	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.001	-	-	-	no_errors	HPX	HGNC	ENSG00000110169				172	1	0.578035	72	31	30.0971
MEN1	0	genome.wustl.edu	37	11	64573765	64573765	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	64573765	64573765	G	A	SNP	MEN1	ENST00000337652	human	ensembl	74_37	-1	known	missense	c.1003	p.R335C	1.000	pfam_Menin	pfam_Menin	-	no_errors	MEN1	HGNC	ENSG00000133895				243	0	0	119	68	36.3636
ATG2A	0	genome.wustl.edu	37	11	64665443	64665443	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	64665443	64665443	C	T	SNP	ATG2A	ENST00000421419	human	ensembl	74_37	-1	known	missense	c.4868	p.R1623H	0.012	NULL	pfam_Autophagy-rel_C	-	no_errors	ATG2A	HGNC	ENSG00000110046				162	0	0	64	23	26.4368
ATG2A	0	genome.wustl.edu	37	11	64666107	64666107	+	Splice_Site	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	64666107	64666107	C	T	SNP	ATG2A	ENST00000421419	human	ensembl	74_37	-1	known	splice_site	c.4677+1	e32+1	1.000	-	-	-	no_errors	ATG2A	HGNC	ENSG00000110046				106	0	0	45	25	35.7143
C11orf85	0	genome.wustl.edu	37	11	64708103	64708103	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	64708103	64708103	T	G	SNP	C11orf85	ENST00000301896	human	ensembl	74_37	-1	known	missense	c.489	p.K163N	0.972	NULL	NULL	-	no_errors	C11orf85	HGNC	ENSG00000168070				212	0	0	118	42	26.25
MALAT1	0	genome.wustl.edu	37	11	65271179	65271179	+	RNA	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	65271179	65271179	G	A	SNP	MALAT1	ENST00000534336	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	MALAT1	HGNC	ENSG00000251562				131	0	0	91	6	6.18557
LTBP3	0	genome.wustl.edu	37	11	65307100	65307100	+	Splice_Site	SNP	C	C	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	65307100	65307100	C	A	SNP	LTBP3	ENST00000301873	human	ensembl	74_37	-1	known	splice_site	c.3548-1	e26-1	0.902	-	-	-	no_errors	LTBP3	HGNC	ENSG00000168056				28	0	0	13	6	31.5789
EHBP1L1	0	genome.wustl.edu	37	11	65348829	65348829	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	65348829	65348829	C	T	SNP	EHBP1L1	ENST00000309295	human	ensembl	74_37	+1	known	missense	c.851	p.T284I	0.000	NULL	pfam_DUF3585,pfam_CH-domain,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	-	no_errors	EHBP1L1	HGNC	ENSG00000173442				33	0	0	21	4	16
EHBP1L1	0	genome.wustl.edu	37	11	65351053	65351053	+	Silent	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	65351053	65351053	T	C	SNP	EHBP1L1	ENST00000309295	human	ensembl	74_37	+1	known	silent	c.2910	p.G970	0.000	NULL	pfam_DUF3585,pfam_CH-domain,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	-	no_errors	EHBP1L1	HGNC	ENSG00000173442				33	0	0	27	4	12.9032
AP5B1	0	genome.wustl.edu	37	11	65546619	65546619	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	65546619	65546619	G	A	SNP	AP5B1	ENST00000532090	human	ensembl	74_37	-1	novel	missense	c.1345	p.R449W	0.241	NULL	NULL	-	no_errors	AP5B1	HGNC	ENSG00000254470				29	0	0	16	9	36
YIF1A	0	genome.wustl.edu	37	11	66053174	66053174	+	Silent	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	66053174	66053174	T	C	SNP	YIF1A	ENST00000376901	human	ensembl	74_37	-1	known	silent	c.483	p.K161	1.000	pfam_Hrf1,pfam_Yip1	pfam_Hrf1,pfam_Yip1	-	no_errors	YIF1A	HGNC	ENSG00000174851				95	0	0	45	18	28.5714
RBM14	0	genome.wustl.edu	37	11	66392810	66392810	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	66392810	66392810	C	T	SNP	RBM14	ENST00000310137	human	ensembl	74_37	+1	known	missense	c.1463	p.A488V	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBM14	HGNC	ENSG00000239306				222	0	0	147	9	5.76923
PC	0	genome.wustl.edu	37	11	66618339	66618339	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	66618339	66618339	C	T	SNP	PC	ENST00000393958	human	ensembl	74_37	-1	known	missense	c.2279	p.R760Q	1.000	pfam_PYR_CT,pirsf_Pyruv_COase,pfscan_PYR_CT,tigrfam_Pyruv_COase	pfam_CbamoylP_synth_lsu-like_ATP-bd,pfam_Carboxylase_cons_dom,pfam_CarbamoylP_synth_lsu_N,pfam_Biotin_COase_C,pfam_PYR_CT,pfam_Biotin_lipoyl,pfam_Dala_Dala_lig_C,superfamily_PreATP-grasp_dom,superfamily_Rudment_hybrid_motif,superfamily_Single_hybrid_motif,smart_Biotin_COase_C,pirsf_Pyruv_COase,pfscan_ATP-grasp,pfscan_Biotin_carboxylation_dom,pfscan_PYR_CT,pfscan_Biotin_lipoyl,tigrfam_Pyruv_COase	-	no_errors	PC	HGNC	ENSG00000173599				62	0	0	38	14	26.9231
PC	0	genome.wustl.edu	37	11	66639309	66639309	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	66639309	66639309	G	A	SNP	PC	ENST00000393958	human	ensembl	74_37	-1	known	missense	c.170	p.T57M	1.000	pfam_CarbamoylP_synth_lsu_N,superfamily_PreATP-grasp_dom,pirsf_Pyruv_COase,pfscan_Biotin_carboxylation_dom,tigrfam_Pyruv_COase	pfam_CbamoylP_synth_lsu-like_ATP-bd,pfam_Carboxylase_cons_dom,pfam_CarbamoylP_synth_lsu_N,pfam_Biotin_COase_C,pfam_PYR_CT,pfam_Biotin_lipoyl,pfam_Dala_Dala_lig_C,superfamily_PreATP-grasp_dom,superfamily_Rudment_hybrid_motif,superfamily_Single_hybrid_motif,smart_Biotin_COase_C,pirsf_Pyruv_COase,pfscan_ATP-grasp,pfscan_Biotin_carboxylation_dom,pfscan_PYR_CT,pfscan_Biotin_lipoyl,tigrfam_Pyruv_COase	-	no_errors	PC	HGNC	ENSG00000173599				38	0	0	23	9	28.125
KDM2A	0	genome.wustl.edu	37	11	67017751	67017751	+	Silent	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	67017751	67017751	T	C	SNP	KDM2A	ENST00000529006	human	ensembl	74_37	+1	known	silent	c.2250	p.S750	1.000	NULL	pfam_Znf_CXXC,pfam_F-box_dom,pfam_JmjC_dom,superfamily_Znf_FYVE_PHD,smart_JmjC_dom,smart_Znf_PHD,smart_Leu-rich_rpt_Cys-con_subtyp,pfscan_JmjC_dom,pfscan_Znf_PHD-finger,pfscan_Znf_CXXC	-	no_errors	KDM2A	HGNC	ENSG00000173120				46	0	0	34	6	15
RAD9A	0	genome.wustl.edu	37	11	67161249	67161249	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	67161249	67161249	G	A	SNP	RAD9A	ENST00000307980	human	ensembl	74_37	+1	known	missense	c.437	p.R146H	0.991	pfam_Rad9/Ddc1,pirsf_Rad9	pfam_Rad9/Ddc1,pirsf_Rad9	-	no_errors	RAD9A	HGNC	ENSG00000172613				22	0	0	16	4	20
PPP1CA	0	genome.wustl.edu	37	11	67168168	67168168	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	67168168	67168168	T	C	SNP	PPP1CA	ENST00000312989	human	ensembl	74_37	-1	known	missense	c.443	p.Y148C	1.000	pfam_PEstase_dom,smart_Ser/Thr-sp_prot-phosphatase,prints_Ser/Thr-sp_prot-phosphatase	pfam_PEstase_dom,smart_Ser/Thr-sp_prot-phosphatase,prints_Ser/Thr-sp_prot-phosphatase	-	no_errors	PPP1CA	HGNC	ENSG00000172531				153	0	0	86	15	14.8515
PTPRCAP	0	genome.wustl.edu	37	11	67203517	67203517	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	67203517	67203517	T	C	SNP	PTPRCAP	ENST00000326294	human	ensembl	74_37	-1	known	missense	c.308	p.D103G	0.000	pirsf_Tyr_Pase_rcpt_C-assoc_CD45-AP	pirsf_Tyr_Pase_rcpt_C-assoc_CD45-AP	-	no_errors	PTPRCAP	HGNC	ENSG00000213402				71	0	0	43	8	15.6863
GPR152	0	genome.wustl.edu	37	11	67219255	67219255	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	67219255	67219255	G	A	SNP	GPR152	ENST00000312457	human	ensembl	74_37	-1	known	missense	c.941	p.A314V	0.933	NULL	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	-	no_errors	GPR152	HGNC	ENSG00000175514				136	0	0	72	38	34.5455
CABP2	0	genome.wustl.edu	37	11	67287283	67287283	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	67287283	67287283	G	A	SNP	CABP2	ENST00000294288	human	ensembl	74_37	-1	known	silent	c.618	p.D206	0.685	pfam_EF_hand_dom,smart_EF_hand_dom,pfscan_EF_hand_dom	pfam_EF_hand_dom,smart_EF_hand_dom,pfscan_EF_hand_dom	-	no_errors	CABP2	HGNC	ENSG00000167791				131	0	0	58	34	36.9565
OR6A2	0	genome.wustl.edu	37	11	6816234	6816234	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	6816234	6816234	C	T	SNP	OR6A2	ENST00000332601	human	ensembl	74_37	-1	known	missense	c.706	p.A236T	0.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR6A2	HGNC	ENSG00000184933				253	1	0.393701	147	15	9.25926
IGHMBP2	0	genome.wustl.edu	37	11	68700870	68700870	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	68700870	68700870	G	A	SNP	IGHMBP2	ENST00000255078	human	ensembl	74_37	+1	known	missense	c.1339	p.A447T	1.000	superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,tigrfam_DNA_helicase_put	pfam_R3H_ss-bd,pfam_Znf_AN1,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_AAA+_ATPase,smart_R3H_ss-bd,smart_Znf_AN1,pfscan_Znf_AN1,pfscan_R3H_ss-bd,tigrfam_DNA_helicase_put	-	no_errors	IGHMBP2	HGNC	ENSG00000132740				43	0	0	18	4	18.1818
ZNF214	0	genome.wustl.edu	37	11	7021758	7021758	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	7021758	7021758	A	G	SNP	ZNF214	ENST00000278314	human	ensembl	74_37	-1	known	missense	c.1156	p.Y386H	0.990	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF214	HGNC	ENSG00000149050				214	0	0	107	37	25.6944
CTTN	0	genome.wustl.edu	37	11	70265939	70265939	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	70265939	70265939	C	T	SNP	CTTN	ENST00000301843	human	ensembl	74_37	+1	known	missense	c.656	p.T219M	1.000	pfam_Hs1_Cortactin,pfscan_Hs1_Cortactin	pfam_Hs1_Cortactin,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_Hs1_Cortactin,pfscan_SH3_domain,prints_SH3_domain,prints_p67phox	-	no_errors	CTTN	HGNC	ENSG00000085733				88	0	0	25	10	28.5714
NUMA1	0	genome.wustl.edu	37	11	71724239	71724239	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	71724239	71724239	A	G	SNP	NUMA1	ENST00000393695	human	ensembl	74_37	-1	known	missense	c.4310	p.L1437P	1.000	NULL	superfamily_Prefoldin	-	no_errors	NUMA1	HGNC	ENSG00000137497				282	0	0	109	15	12.0968
EPS8L2	0	genome.wustl.edu	37	11	723324	723324	+	Silent	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	723324	723324	A	G	SNP	EPS8L2	ENST00000318562	human	ensembl	74_37	+1	known	silent	c.1425	p.L475	0.007	NULL	pfam_PTB,pfam_SH3_domain,pfam_PTB/PI_dom,pfam_SH3_2,superfamily_SH3_domain,superfamily_SAM/pointed,smart_PTB/PI_dom,smart_SH3_domain,pfscan_PTB/PI_dom,pfscan_SH3_domain	-	no_errors	EPS8L2	HGNC	ENSG00000177106				139	0	0	107	12	10.084
MRPL48	0	genome.wustl.edu	37	11	73555944	73555944	+	Silent	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	73555944	73555944	T	C	SNP	MRPL48	ENST00000310614	human	ensembl	74_37	+1	known	silent	c.294	p.Y98	0.992	pfam_Ribosomal_S10_dom,superfamily_Ribosomal_S10_dom	pfam_Ribosomal_S10_dom,superfamily_Ribosomal_S10_dom	-	no_errors	MRPL48	HGNC	ENSG00000175581				125	0	0	92	6	6.12245
SLCO2B1	0	genome.wustl.edu	37	11	74876980	74876980	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	74876980	74876980	A	G	SNP	SLCO2B1	ENST00000289575	human	ensembl	74_37	+1	known	missense	c.434	p.D145G	0.179	pfam_OA_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,tigrfam_OA_transporter	pfam_OA_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,tigrfam_OA_transporter	-	no_errors	SLCO2B1	HGNC	ENSG00000137491				303	1	0.328947	193	23	10.6481
SERPINH1	0	genome.wustl.edu	37	11	75280189	75280189	+	Silent	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	75280189	75280189	T	C	SNP	SERPINH1	ENST00000358171	human	ensembl	74_37	+1	known	silent	c.927	p.G309	0.013	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	-	no_errors	SERPINH1	HGNC	ENSG00000149257				29	0	0	22	6	21.4286
ENSG00000255449	0	genome.wustl.edu	37	11	77580756	77580756	+	RNA	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	77580756	77580756	T	C	SNP	ENSG00000255449	ENST00000530972	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	RP11-91P24.6	Clone_based_vega_gene	ENSG00000255449				268	0	0	114	64	35.9551
THRSP	0	genome.wustl.edu	37	11	77774985	77774985	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	77774985	77774985	T	C	SNP	THRSP	ENST00000281030	human	ensembl	74_37	+1	known	missense	c.58	p.Y20H	0.945	pfam_Spot_14	pfam_Spot_14	-	no_errors	THRSP	HGNC	ENSG00000151365				157	1	0.632911	102	11	9.73451
TENM4	0	genome.wustl.edu	37	11	78467937	78467937	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	78467937	78467937	T	C	SNP	TENM4	ENST00000278550	human	ensembl	74_37	-1	known	missense	c.2669	p.N890S	1.000	NULL	pfam_Ten_N,pfam_EGF_extracell,pfam_YD,superfamily_CarboxyPept-like_regulatory,smart_EG-like_dom,pfscan_EG-like_dom,tigrfam_YD,tigrfam_Rhs_assc_core	-	no_errors	TENM4	HGNC	ENSG00000149256				63	0	0	36	16	30.7692
PIDD	0	genome.wustl.edu	37	11	802588	802588	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	802588	802588	A	C	SNP	PIDD	ENST00000347755	human	ensembl	74_37	-1	known	missense	c.929	p.L310R	0.000	NULL	pfam_Peptidase_S68_pidd,pfam_Death_domain,pfam_Leu-rich_rpt,pfam_ZU5,superfamily_DEATH-like_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Death_domain,pfscan_Death_domain,pfscan_ZU5	-	no_errors	PIDD	HGNC	ENSG00000177595				23	0	0	13	7	35
TUB	0	genome.wustl.edu	37	11	8111723	8111723	+	Silent	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	8111723	8111723	A	G	SNP	TUB	ENST00000305253	human	ensembl	74_37	+1	known	silent	c.363	p.E121	0.993	prints_Tubby_N	pfam_Tubby_C,superfamily_Tubby_C-like,prints_Tubby_N,prints_Tubby_C	-	no_errors	TUB	HGNC	ENSG00000166402				90	0	0	60	13	17.8082
STK33	0	genome.wustl.edu	37	11	8478918	8478918	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	8478918	8478918	C	T	SNP	STK33	ENST00000315204	human	ensembl	74_37	-1	known	missense	c.667	p.A223T	0.957	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	STK33	HGNC	ENSG00000130413				165	0	0	69	35	33.6538
TMEM126B	0	genome.wustl.edu	37	11	85345229	85345229	+	Silent	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	85345229	85345229	T	C	SNP	TMEM126B	ENST00000358867	human	ensembl	74_37	+1	known	silent	c.303	p.H101	0.043	pfam_DUF1370_TMEM126	pfam_DUF1370_TMEM126	-	no_errors	TMEM126B	HGNC	ENSG00000171204				155	0	0	88	17	16.1905
CTSC	0	genome.wustl.edu	37	11	88027562	88027562	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	88027562	88027562	T	A	SNP	CTSC	ENST00000227266	human	ensembl	74_37	-1	known	missense	c.1004	p.E335V	0.004	pfam_Peptidase_C1A_C,smart_Peptidase_C1A_C	pfam_Peptidase_C1A_C,pfam_CathepsinC_exc,smart_Peptidase_C1A_C,prints_Peptidase_C1A_C	-	no_errors	CTSC	HGNC	ENSG00000109861				234	0	0	111	49	30.625
FAT3	0	genome.wustl.edu	37	11	92087727	92087727	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	92087727	92087727	C	A	SNP	FAT3	ENST00000298047	human	ensembl	74_37	+1	known	missense	c.2449	p.L817M	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Laminin_G,pfam_EGF-like_Ca-bd_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,smart_EG-like_dom,smart_Laminin_G,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT3	HGNC	ENSG00000165323				120	0	0	42	20	32.2581
FAT3	0	genome.wustl.edu	37	11	92533129	92533129	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	92533129	92533129	A	G	SNP	FAT3	ENST00000298047	human	ensembl	74_37	+1	known	missense	c.6950	p.E2317G	0.997	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,pfam_EGF-like_Ca-bd_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,smart_EG-like_dom,smart_Laminin_G,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT3	HGNC	ENSG00000165323				44	0	0	23	5	17.8571
SCARNA9	0	genome.wustl.edu	37	11	93454869	93454869	+	RNA	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	93454869	93454869	C	T	SNP	SCARNA9	ENST00000530422	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SCARNA9	HGNC	ENSG00000254911				49	0	0	29	13	30.9524
PANX1	0	genome.wustl.edu	37	11	93911695	93911695	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	93911695	93911695	G	A	SNP	PANX1	ENST00000227638	human	ensembl	74_37	+1	known	missense	c.482	p.R161H	0.000	pfam_Innexin,pfscan_Innexin	pfam_Innexin,pfscan_Innexin	-	no_errors	PANX1	HGNC	ENSG00000110218				118	0	0	58	36	38.2979
FUT4	0	genome.wustl.edu	37	11	94278118	94278118	+	Silent	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	94278118	94278118	A	G	SNP	FUT4	ENST00000358752	human	ensembl	74_37	+1	known	silent	c.819	p.A273	0.000	pfam_Glyco_trans_10	pfam_Glyco_trans_10	-	no_errors	FUT4	HGNC	ENSG00000196371				28	0	0	10	8	44.4444
IPO7	0	genome.wustl.edu	37	11	9446771	9446771	+	Silent	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	9446771	9446771	C	T	SNP	IPO7	ENST00000379719	human	ensembl	74_37	+1	known	silent	c.1297	p.L433	1.000	pfam_Cse1,superfamily_ARM-type_fold	pfam_Importin-beta_N,pfam_Cse1,superfamily_ARM-type_fold,smart_Importin-beta_N,pfscan_Importin-beta_N	-	no_errors	IPO7	HGNC	ENSG00000205339				124	0	0	107	6	5.30973
IPO7	0	genome.wustl.edu	37	11	9452545	9452545	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	9452545	9452545	A	G	SNP	IPO7	ENST00000379719	human	ensembl	74_37	+1	known	missense	c.1876	p.K626E	1.000	superfamily_ARM-type_fold	pfam_Importin-beta_N,pfam_Cse1,superfamily_ARM-type_fold,smart_Importin-beta_N,pfscan_Importin-beta_N	-	no_errors	IPO7	HGNC	ENSG00000205339				86	0	0	58	9	13.4328
IPO7	0	genome.wustl.edu	37	11	9456521	9456521	+	Silent	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	9456521	9456521	A	G	SNP	IPO7	ENST00000379719	human	ensembl	74_37	+1	known	silent	c.2115	p.T705	1.000	superfamily_ARM-type_fold	pfam_Importin-beta_N,pfam_Cse1,superfamily_ARM-type_fold,smart_Importin-beta_N,pfscan_Importin-beta_N	-	no_errors	IPO7	HGNC	ENSG00000205339				172	0	0	88	36	29.0323
KDM4E	0	genome.wustl.edu	37	11	94759243	94759243	+	Silent	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	94759243	94759243	A	G	SNP	KDM4E	ENST00000450979	human	ensembl	74_37	+1	known	silent	c.522	p.T174	0.817	smart_JmjC_dom,pfscan_JmjC_dom	pfam_JmjC_dom,pfam_TF_JmjN,smart_TF_JmjN,smart_JmjC_dom,pfscan_TF_JmjN,pfscan_JmjC_dom	-	no_errors	KDM4E	HGNC	ENSG00000235268				144	1	0.689655	88	37	29.6
ENDOD1	0	genome.wustl.edu	37	11	94862256	94862256	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	94862256	94862256	T	C	SNP	ENDOD1	ENST00000278505	human	ensembl	74_37	+1	known	missense	c.1016	p.F339S	0.084	NULL	pfam_DNA/RNA_non-sp_Endonuclease,smart_DNA/RNA_non-sp_Endonuclease,smart_Extracellular_endonuc_su_A	-	no_errors	ENDOD1	HGNC	ENSG00000149218				104	0	0	72	12	14.2857
CEP57	0	genome.wustl.edu	37	11	95561052	95561052	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	95561052	95561052	A	G	SNP	CEP57	ENST00000325542	human	ensembl	74_37	+1	known	missense	c.988	p.I330V	0.000	pfam_Cep57_MT-bd_dom	pfam_Cep57_MT-bd_dom	-	no_errors	CEP57	HGNC	ENSG00000166037				197	0	0	122	69	36.1257
SBF2	0	genome.wustl.edu	37	11	9875254	9875254	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	9875254	9875254	G	A	SNP	SBF2	ENST00000256190	human	ensembl	74_37	-1	known	missense	c.2369	p.A790V	1.000	NULL	pfam_SBF2,pfam_DENN_dom,pfam_uDENN_dom,pfam_Myotubularin-like_Pase_dom,pfam_dDENN_dom,pfam_Pleckstrin_homology,pfam_GRAM,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,smart_GRAM,smart_Pleckstrin_homology,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom,pfscan_Pleckstrin_homology	-	no_errors	SBF2	HGNC	ENSG00000133812				262	0	0	132	64	32.6531
UHRF1BP1L	0	genome.wustl.edu	37	12	100482808	100482808	+	Silent	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	12	100482808	100482808	T	C	SNP	UHRF1BP1L	ENST00000279907	human	ensembl	74_37	-1	known	silent	c.906	p.V302	0.823	NULL	NULL	-	no_errors	UHRF1BP1L	HGNC	ENSG00000111647				155	0	0	83	6	6.74157
NR1H4	0	genome.wustl.edu	37	12	100904733	100904733	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	12	100904733	100904733	A	T	SNP	NR1H4	ENST00000551379	human	ensembl	74_37	+1	known	missense	c.287	p.Y96F	1.000	NULL	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,prints_ThyrH_rcpt	-	no_errors	NR1H4	HGNC	ENSG00000012504				162	0	0	115	8	6.50407
GAS2L3	0	genome.wustl.edu	37	12	101017693	101017693	+	Silent	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	12	101017693	101017693	T	C	SNP	GAS2L3	ENST00000266754	human	ensembl	74_37	+1	known	silent	c.1110	p.R370	0.002	NULL	pfam_GAS2_dom,pfam_CH-domain,superfamily_CH-domain,superfamily_GAS2_dom,smart_CH-domain,smart_GAS2_dom,pfscan_CH-domain	-	no_errors	GAS2L3	HGNC	ENSG00000139354				204	0	0	90	57	38.7755
ANO4	0	genome.wustl.edu	37	12	101381326	101381326	+	Silent	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	12	101381326	101381326	A	G	SNP	ANO4	ENST00000392977	human	ensembl	74_37	+1	known	silent	c.612	p.K204	1.000	NULL	pfam_Anoctamin	-	no_errors	ANO4	HGNC	ENSG00000151572				827	1	0.120773	568	38	6.27063
GNPTAB	0	genome.wustl.edu	37	12	102158448	102158448	+	Silent	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	12	102158448	102158448	T	C	SNP	GNPTAB	ENST00000299314	human	ensembl	74_37	-1	known	silent	c.2247	p.K749	0.009	pfam_DMAP1-bd	pfam_DMAP1-bd,pfam_Notch_dom,pfam_DUF3184,superfamily_Notch_dom,smart_Notch_dom,pfscan_EF_hand_dom,pfscan_Notch_dom	-	no_errors	GNPTAB	HGNC	ENSG00000111670				110	0	0	72	4	5.26316
GNPTAB	0	genome.wustl.edu	37	12	102158674	102158674	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	12	102158674	102158674	C	T	SNP	GNPTAB	ENST00000299314	human	ensembl	74_37	-1	known	missense	c.2021	p.R674H	1.000	NULL	pfam_DMAP1-bd,pfam_Notch_dom,pfam_DUF3184,superfamily_Notch_dom,smart_Notch_dom,pfscan_EF_hand_dom,pfscan_Notch_dom	-	no_errors	GNPTAB	HGNC	ENSG00000111670				132	0	0	76	9	10.5882
PARPBP	0	genome.wustl.edu	37	12	102590100	102590100	+	RNA	SNP	A	A	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	12	102590100	102590100	A	T	SNP	PARPBP	ENST00000535811	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	PARPBP	HGNC	ENSG00000185480				40	0	0	20	4	16.6667
STAB2	0	genome.wustl.edu	37	12	104030964	104030964	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	12	104030964	104030964	T	G	SNP	STAB2	ENST00000388887	human	ensembl	74_37	+1	known	missense	c.659	p.L220R	0.477	smart_EGF_laminin,smart_EG-like_dom,pfscan_EG-like_dom	pfam_FAS1_domain,pfam_Link,superfamily_C-type_lectin_fold,superfamily_FAS1_domain,superfamily_Growth_fac_rcpt_N_dom,smart_EG-like_dom,smart_EGF_laminin,smart_EGF-like_Ca-bd_dom,smart_FAS1_domain,smart_Link,pfscan_EG-like_dom,pfscan_FAS1_domain,pfscan_Link	-	no_errors	STAB2	HGNC	ENSG00000136011				249	0	0	152	17	10.0592
STAB2	0	genome.wustl.edu	37	12	104123945	104123945	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	12	104123945	104123945	A	G	SNP	STAB2	ENST00000388887	human	ensembl	74_37	+1	known	missense	c.5134	p.S1712G	0.010	pfam_FAS1_domain,superfamily_FAS1_domain,smart_FAS1_domain,pfscan_FAS1_domain	pfam_FAS1_domain,pfam_Link,superfamily_C-type_lectin_fold,superfamily_FAS1_domain,superfamily_Growth_fac_rcpt_N_dom,smart_EG-like_dom,smart_EGF_laminin,smart_EGF-like_Ca-bd_dom,smart_FAS1_domain,smart_Link,pfscan_EG-like_dom,pfscan_FAS1_domain,pfscan_Link	-	no_errors	STAB2	HGNC	ENSG00000136011				251	0	0	121	60	33.1492
STAB2	0	genome.wustl.edu	37	12	104142848	104142848	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	12	104142848	104142848	G	A	SNP	STAB2	ENST00000388887	human	ensembl	74_37	+1	known	missense	c.6352	p.G2118R	1.000	smart_EG-like_dom	pfam_FAS1_domain,pfam_Link,superfamily_C-type_lectin_fold,superfamily_FAS1_domain,superfamily_Growth_fac_rcpt_N_dom,smart_EG-like_dom,smart_EGF_laminin,smart_EGF-like_Ca-bd_dom,smart_FAS1_domain,smart_Link,pfscan_EG-like_dom,pfscan_FAS1_domain,pfscan_Link	-	no_errors	STAB2	HGNC	ENSG00000136011				123	0	0	64	22	25.5814
KLRD1	0	genome.wustl.edu	37	12	10466091	10466091	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	12	10466091	10466091	G	A	SNP	KLRD1	ENST00000381908	human	ensembl	74_37	+1	known	missense	c.401	p.G134D	0.945	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	-	no_errors	KLRD1	HGNC	ENSG00000134539				201	0	0	95	38	28.5714
TXNRD1	0	genome.wustl.edu	37	12	104681126	104681126	+	Splice_Site	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	12	104681126	104681126	T	C	SNP	TXNRD1	ENST00000388854	human	ensembl	74_37	+1	known	splice_site	c.10+2	e1+2	0.002	-	-	-	no_errors	TXNRD1	HGNC	ENSG00000198431				618	0	0	291	142	32.7945
ALDH1L2	0	genome.wustl.edu	37	12	105418218	105418218	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	12	105418218	105418218	A	G	SNP	ALDH1L2	ENST00000258494	human	ensembl	74_37	-1	known	missense	c.2756	p.V919A	1.000	pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH,pirsf_10_FTHF_DH	pfam_Aldehyde_DH_dom,pfam_Formyl_transf_N,pfam_Formyl_trans_C,pfam_Acyl_carrier_prot-like,superfamily_Ald_DH/histidinol_DH,superfamily_Formyl_transf_N,superfamily_Formyl_transferase_C-like,superfamily_Acyl_carrier_prot-like,pirsf_10_FTHF_DH,pfscan_Acyl_carrier_prot-like	-	no_errors	ALDH1L2	HGNC	ENSG00000136010				40	0	0	22	9	29.0323
ENSG00000180574	0	genome.wustl.edu	37	12	10659494	10659494	+	Silent	SNP	T	T	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	12	10659494	10659494	T	G	SNP	ENSG00000180574	ENST00000538173	human	ensembl	74_37	+1	known	silent	c.993	p.A331	0.985	pfam_Transl_elong_EFTu/EF1A_2,superfamily_Transl_B-barrel	pfam_EF_GTP-bd_dom,pfam_TIF2_gsu_C,pfam_Transl_elong_EFTu/EF1A_2,superfamily_P-loop_NTPase,superfamily_Transl_B-barrel,superfamily_Transl_elong_EF1A/Init_IF2_C,prints_EF_GTP-bd_dom	-	no_errors	EIF2S3L	Uniprot_gn	ENSG00000180574				280	0	0	143	61	29.902
POLR3B	0	genome.wustl.edu	37	12	106763412	106763412	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	12	106763412	106763412	T	C	SNP	POLR3B	ENST00000228347	human	ensembl	74_37	+1	known	missense	c.355	p.Y119H	1.000	pfam_RNA_pol_bsu_protrusion	pfam_DNA-dir_RNA_pol_su2_6,pfam_RNA_pol_bsu_protrusion,pfam_RNA_pol_Rpb2_7,pfam_RNA_pol_Rpb2_2,pfam_RNA_pol_Rpb2_3,pfam_RNA_pol_Rpb2_4,pfam_RNA_pol_Rpb2_5	-	no_errors	POLR3B	HGNC	ENSG00000013503				185	0	0	86	45	34.3511
PWP1	0	genome.wustl.edu	37	12	108082460	108082460	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	12	108082460	108082460	G	A	SNP	PWP1	ENST00000412830	human	ensembl	74_37	+1	known	missense	c.200	p.R67H	0.002	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	PWP1	HGNC	ENSG00000136045				115	0	0	52	20	27.7778
WSCD2	0	genome.wustl.edu	37	12	108589987	108589987	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	12	108589987	108589987	G	T	SNP	WSCD2	ENST00000261400	human	ensembl	74_37	+1	known	missense	c.378	p.E126D	0.987	NULL	pfam_WSC_carb-bd,superfamily_P-loop_NTPase,smart_WSC_carb-bd_subgr,pfscan_WSC_carb-bd	-	no_errors	WSCD2	HGNC	ENSG00000075035				70	0	0	25	18	41.8605
SART3	0	genome.wustl.edu	37	12	108924060	108924060	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	12	108924060	108924060	G	A	SNP	SART3	ENST00000228284	human	ensembl	74_37	-1	known	nonsense	c.1774	p.Q592*	1.000	NULL	pfam_RRM_dom,pfam_LSM_interact,smart_HAT,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	SART3	HGNC	ENSG00000075856				146	0	0	71	11	13.4146
SART3	0	genome.wustl.edu	37	12	108926095	108926095	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	12	108926095	108926095	G	A	SNP	SART3	ENST00000228284	human	ensembl	74_37	-1	known	silent	c.1572	p.T524	0.229	NULL	pfam_RRM_dom,pfam_LSM_interact,smart_HAT,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	SART3	HGNC	ENSG00000075856				129	0	0	82	7	7.86517
SSH1	0	genome.wustl.edu	37	12	109194580	109194580	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	12	109194580	109194580	G	A	SNP	SSH1	ENST00000326495	human	ensembl	74_37	-1	known	missense	c.1124	p.A375V	0.999	pfam_Dual-sp_phosphatase_cat-dom,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Tyr/Dual-sp_Pase,pfscan_Dual-sp_phosphatase_subgr_cat	pfam_Dual-sp_phosphatase_cat-dom,pfam_DEK_C,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Tyr/Dual-sp_Pase,pfscan_Dual-sp_phosphatase_subgr_cat	-	no_errors	SSH1	HGNC	ENSG00000084112				179	0	0	91	40	30.5344
ACACB	0	genome.wustl.edu	37	12	109674991	109674991	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	12	109674991	109674991	C	T	SNP	ACACB	ENST00000338432	human	ensembl	74_37	+1	known	missense	c.4468	p.R1490C	1.000	pfam_AcCoA_COase_cen	pfam_AcCoA_COase_cen,pfam_Carboxyl_trans,pfam_CbamoylP_synth_lsu-like_ATP-bd,pfam_CarbamoylP_synth_lsu_N,pfam_Biotin_COase_C,pfam_Biotin_lipoyl,superfamily_PreATP-grasp_dom,superfamily_Rudment_hybrid_motif,superfamily_Single_hybrid_motif,smart_Biotin_COase_C,pfscan_ATP-grasp,pfscan_Biotin_carboxylation_dom,pfscan_COA_CT_N,pfscan_COA_CT_C,pfscan_Biotin_lipoyl	-	no_errors	ACACB	HGNC	ENSG00000076555				224	0	0	116	45	27.9503
ACACB	0	genome.wustl.edu	37	12	109685462	109685462	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	12	109685462	109685462	C	A	SNP	ACACB	ENST00000338432	human	ensembl	74_37	+1	known	missense	c.5623	p.L1875M	1.000	pfam_Carboxyl_trans,pfscan_COA_CT_N	pfam_AcCoA_COase_cen,pfam_Carboxyl_trans,pfam_CbamoylP_synth_lsu-like_ATP-bd,pfam_CarbamoylP_synth_lsu_N,pfam_Biotin_COase_C,pfam_Biotin_lipoyl,superfamily_PreATP-grasp_dom,superfamily_Rudment_hybrid_motif,superfamily_Single_hybrid_motif,smart_Biotin_COase_C,pfscan_ATP-grasp,pfscan_Biotin_carboxylation_dom,pfscan_COA_CT_N,pfscan_COA_CT_C,pfscan_Biotin_lipoyl	-	no_errors	ACACB	HGNC	ENSG00000076555				247	1	0.403226	167	18	9.72973
KCTD10	0	genome.wustl.edu	37	12	109894111	109894111	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	12	109894111	109894111	C	T	SNP	KCTD10	ENST00000228495	human	ensembl	74_37	-1	known	missense	c.535	p.D179N	1.000	NULL	pfam_T1-type_BTB,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like	-	no_errors	KCTD10	HGNC	ENSG00000110906				129	0	0	63	35	35.7143
FAM222A	0	genome.wustl.edu	37	12	110206189	110206189	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	12	110206189	110206189	G	A	SNP	FAM222A	ENST00000358906	human	ensembl	74_37	+1	known	missense	c.455	p.S152N	1.000	NULL	NULL	-	no_errors	FAM222A	HGNC	ENSG00000139438				31	0	0	12	8	40
FAM222A	0	genome.wustl.edu	37	12	110206716	110206716	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	12	110206716	110206716	C	T	SNP	FAM222A	ENST00000358906	human	ensembl	74_37	+1	known	missense	c.982	p.P328S	0.999	NULL	NULL	-	no_errors	FAM222A	HGNC	ENSG00000139438				18	0	0	3	3	50
TRPV4	0	genome.wustl.edu	37	12	110246174	110246174	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	12	110246174	110246174	G	A	SNP	TRPV4	ENST00000261740	human	ensembl	74_37	-1	known	silent	c.486	p.S162	0.998	tigrfam_TRP_channel	pfam_Ankyrin_rpt,pfam_Ion_trans_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_TRPV1-4_channel,prints_TRPV4_channel,tigrfam_TRP_channel	-	no_errors	TRPV4	HGNC	ENSG00000111199				83	0	0	64	15	18.9873
ANAPC7	0	genome.wustl.edu	37	12	110834127	110834127	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	12	110834127	110834127	T	C	SNP	ANAPC7	ENST00000455511	human	ensembl	74_37	-1	known	missense	c.334	p.K112E	1.000	NULL	pfam_TPR_2,pfam_TPR_1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	ANAPC7	HGNC	ENSG00000196510				157	0	0	106	42	28.3784
CUX2	0	genome.wustl.edu	37	12	111760355	111760355	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	12	111760355	111760355	C	T	SNP	CUX2	ENST00000261726	human	ensembl	74_37	+1	known	missense	c.2897	p.A966V	0.988	superfamily_Lambda_DNA-bd_dom,pfscan_Hmoeo_CUT	pfam_Hmoeo_CUT,pfam_Homeobox_dom,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,superfamily_Prefoldin,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Hmoeo_CUT	-	no_errors	CUX2	HGNC	ENSG00000111249				45	0	0	13	6	31.5789
ATXN2	0	genome.wustl.edu	37	12	111907920	111907920	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	12	111907920	111907920	G	A	SNP	ATXN2	ENST00000377617	human	ensembl	74_37	-1	known	missense	c.3308	p.A1103V	1.000	NULL	pfam_LsmAD_domain,pfam_Ataxin-2_C,superfamily_LSM_dom	-	no_errors	ATXN2	HGNC	ENSG00000204842				191	0	0	84	49	36.8421
ATXN2	0	genome.wustl.edu	37	12	111951319	111951319	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	12	111951319	111951319	G	T	SNP	ATXN2	ENST00000377617	human	ensembl	74_37	-1	known	missense	c.1880	p.A627D	1.000	NULL	pfam_LsmAD_domain,pfam_Ataxin-2_C,superfamily_LSM_dom	-	no_errors	ATXN2	HGNC	ENSG00000204842				86	0	0	44	14	24.1379
TAS2R64P	0	genome.wustl.edu	37	12	11230660	11230660	+	RNA	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	12	11230660	11230660	A	G	SNP	TAS2R64P	ENST00000534866	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	TAS2R64P	HGNC	ENSG00000256274				54	0	0	15	30	66.6667
HECTD4	0	genome.wustl.edu	37	12	112688056	112688056	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	12	112688056	112688056	G	T	SNP	HECTD4	ENST00000377560	human	ensembl	74_37	-1	known	missense	c.3326	p.P1109H	1.000	NULL	pfam_HECT,superfamily_HECT,superfamily_ConA-like_lec_gl_sf,smart_HECT,pfscan_HECT	-	no_errors	HECTD4	HGNC	ENSG00000173064				196	0	0	97	46	32.1678
PTPN11	0	genome.wustl.edu	37	12	112924296	112924296	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	12	112924296	112924296	G	A	SNP	PTPN11	ENST00000351677	human	ensembl	74_37	+1	known	silent	c.1242	p.T414	0.011	pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pirsf_Tyr_Pase_non-rcpt_typ-6/11,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_SH2,smart_SH2,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pirsf_Tyr_Pase_non-rcpt_typ-6/11,pfscan_SH2,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt,prints_SH2	-	no_errors	PTPN11	HGNC	ENSG00000179295				157	0	0	92	12	11.5385
OAS3	0	genome.wustl.edu	37	12	113379472	113379472	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	12	113379472	113379472	C	T	SNP	OAS3	ENST00000228928	human	ensembl	74_37	+1	known	missense	c.275	p.A92V	0.000	pfscan_2-5-oligoadenylate_synth_N	pfam_2-5-oligoAdlate_synth_1_dom2/C,pfam_Nucleotidyltransferase,pfscan_2-5-oligoadenylate_synth_N	-	no_errors	OAS3	HGNC	ENSG00000111331				170	0	0	85	40	32
ERC1	0	genome.wustl.edu	37	12	1137465	1137465	+	Silent	SNP	T	T	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	12	1137465	1137465	T	A	SNP	ERC1	ENST00000360905	human	ensembl	74_37	+1	known	silent	c.396	p.P132	0.591	NULL	pfam_CAZ_cplx_RIM-bd_prot,pfam_Rab-bd_FIP-RBD,superfamily_Prefoldin	-	no_errors	ERC1	HGNC	ENSG00000082805				153	0	0	115	12	9.44882
MED13L	0	genome.wustl.edu	37	12	116403940	116403940	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	12	116403940	116403940	A	G	SNP	MED13L	ENST00000281928	human	ensembl	74_37	-1	known	missense	c.6334	p.W2112R	1.000	pfam_Mediator_Med13	pfam_Mediator_Med13,pfam_Mediator_Med13_N_met/fun	-	no_errors	MED13L	HGNC	ENSG00000123066				332	0	0	169	65	27.7778
MED13L	0	genome.wustl.edu	37	12	116421280	116421280	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	12	116421280	116421280	G	C	SNP	MED13L	ENST00000281928	human	ensembl	74_37	-1	known	missense	c.4597	p.P1533A	1.000	NULL	pfam_Mediator_Med13,pfam_Mediator_Med13_N_met/fun	-	no_errors	MED13L	HGNC	ENSG00000123066				173	0	0	95	37	28.0303
MED13L	0	genome.wustl.edu	37	12	116428979	116428979	+	Silent	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	12	116428979	116428979	A	G	SNP	MED13L	ENST00000281928	human	ensembl	74_37	-1	known	silent	c.3780	p.S1260	0.983	NULL	pfam_Mediator_Med13,pfam_Mediator_Med13_N_met/fun	-	no_errors	MED13L	HGNC	ENSG00000123066				247	0	0	161	12	6.93642
FBXO21	0	genome.wustl.edu	37	12	117603360	117603360	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	12	117603360	117603360	T	C	SNP	FBXO21	ENST00000330622	human	ensembl	74_37	-1	known	missense	c.1256	p.Y419C	1.000	superfamily_F-box_dom	pfam_Hemimethylated_DNA-bd_dom,superfamily_Hemimethylated_DNA-bd_dom,superfamily_F-box_dom,tigrfam_Hemimethylated_DNA-bd_dom	-	no_errors	FBXO21	HGNC	ENSG00000135108				205	0	0	121	19	13.5714
NOS1	0	genome.wustl.edu	37	12	117665266	117665266	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	12	117665266	117665266	T	C	SNP	NOS1	ENST00000317775	human	ensembl	74_37	-1	known	missense	c.3586	p.T1196A	1.000	pfam_FAD-binding_1,superfamily_Riboflavin_synthase-like_b-brl,pirsf_NOS_euk	pfam_NO_synthase_oxygenase_dom,pfam_FAD-binding_1,pfam_Flavodoxin/NO_synth,pfam_OxRdtase_FAD/NAD-bd,pfam_PDZ,superfamily_NO_synthase_oxygenase_dom,superfamily_Riboflavin_synthase-like_b-brl,superfamily_PDZ,smart_PDZ,pirsf_NOS_euk,pfscan_PDZ,pfscan_Flavodoxin/NO_synth,prints_Flavoprot_Pyr_Nucl_cyt_Rdtase,prints_Flavdoxin	-	no_errors	NOS1	HGNC	ENSG00000089250				110	0	0	62	20	24.3902
VSIG10	0	genome.wustl.edu	37	12	118506221	118506221	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	12	118506221	118506221	T	C	SNP	VSIG10	ENST00000359236	human	ensembl	74_37	-1	known	missense	c.1528	p.N510D	0.715	NULL	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	-	no_errors	VSIG10	HGNC	ENSG00000176834				248	1	0.401606	136	44	24.4444
HNF1A	0	genome.wustl.edu	37	12	121438866	121438866	+	Splice_Site	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	12	121438866	121438866	A	G	SNP	HNF1A	ENST00000257555	human	ensembl	74_37	+1	known	splice_site	c.1769-2	e10-2	1.000	-	-	-	no_errors	HNF1A	HGNC	ENSG00000135100				92	0	0	50	22	30.5556
KDM2B	0	genome.wustl.edu	37	12	121958857	121958857	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	12	121958857	121958857	G	A	SNP	KDM2B	ENST00000377071	human	ensembl	74_37	-1	known	silent	c.978	p.G326	0.931	smart_JmjC_dom,pfscan_JmjC_dom	pfam_Znf_CXXC,pfam_F-box_dom,pfam_JmjC_dom,superfamily_Znf_FYVE_PHD,smart_JmjC_dom,smart_Znf_PHD,smart_Leu-rich_rpt_Cys-con_subtyp,pfscan_JmjC_dom,pfscan_Znf_PHD-finger,pfscan_Znf_CXXC	-	no_errors	KDM2B	HGNC	ENSG00000089094				96	0	0	42	23	35.3846
DIABLO	0	genome.wustl.edu	37	12	122702813	122702813	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	12	122702813	122702813	C	A	SNP	DIABLO	ENST00000443649	human	ensembl	74_37	-1	known	missense	c.315	p.K105N	1.000	pfam_Smac_DIABLO,superfamily_Smac_DIABLO-like	pfam_Smac_DIABLO,superfamily_Smac_DIABLO-like	-	no_errors	DIABLO	HGNC	ENSG00000184047				208	0	0	93	38	29.0076
VPS37B	0	genome.wustl.edu	37	12	123351983	123351983	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	12	123351983	123351983	G	A	SNP	VPS37B	ENST00000267202	human	ensembl	74_37	-1	known	silent	c.538	p.L180	0.984	NULL	pfam_Mod_r	-	no_errors	VPS37B	HGNC	ENSG00000139722				202	0	0	121	9	6.92308
EIF2B1	0	genome.wustl.edu	37	12	124106441	124106441	+	Silent	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	12	124106441	124106441	C	T	SNP	EIF2B1	ENST00000424014	human	ensembl	74_37	-1	known	silent	c.780	p.A260	0.000	pfam_IF-2B-related	pfam_IF-2B-related	-	no_errors	EIF2B1	HGNC	ENSG00000111361				58	0	0	44	5	10.2041
DNAH10	0	genome.wustl.edu	37	12	124283835	124283835	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	12	124283835	124283835	T	C	SNP	DNAH10	ENST00000409039	human	ensembl	74_37	+1	known	missense	c.1852	p.Y618H	0.999	pfam_Dynein_heavy_dom-1	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,superfamily_PyrdxlP-dep_Trfase,smart_AAA+_ATPase	-	no_errors	DNAH10	HGNC	ENSG00000197653				107	0	0	78	8	9.30233
DNAH10	0	genome.wustl.edu	37	12	124393872	124393872	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	12	124393872	124393872	T	C	SNP	DNAH10	ENST00000409039	human	ensembl	74_37	+1	known	missense	c.9526	p.Y3176H	0.988	NULL	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,superfamily_PyrdxlP-dep_Trfase,smart_AAA+_ATPase	-	no_errors	DNAH10	HGNC	ENSG00000197653				35	0	0	20	3	13.0435
DHX37	0	genome.wustl.edu	37	12	125461903	125461903	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	12	125461903	125461903	T	C	SNP	DHX37	ENST00000308736	human	ensembl	74_37	-1	known	missense	c.872	p.E291G	1.000	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_T2SS_protein-E,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_DUF1605,pfam_Helicase-assoc_dom,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_T2SS_protein-E,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DHX37	HGNC	ENSG00000150990				411	1	0.242718	211	95	31.0458
TMEM132B	0	genome.wustl.edu	37	12	126138514	126138514	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	12	126138514	126138514	T	C	SNP	TMEM132B	ENST00000299308	human	ensembl	74_37	+1	known	missense	c.2495	p.F832S	0.003	NULL	NULL	-	no_errors	TMEM132B	HGNC	ENSG00000139364				126	0	0	86	5	5.49451
TMEM132D	0	genome.wustl.edu	37	12	129566529	129566529	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	12	129566529	129566529	G	A	SNP	TMEM132D	ENST00000422113	human	ensembl	74_37	-1	known	silent	c.1698	p.R566	0.009	NULL	NULL	-	no_errors	TMEM132D	HGNC	ENSG00000151952				155	0	0	73	18	19.7802
DDX47	0	genome.wustl.edu	37	12	12974332	12974332	+	Splice_Site	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	12	12974332	12974332	T	C	SNP	DDX47	ENST00000358007	human	ensembl	74_37	+1	known	splice_site	c.370+2	e3+2	1.000	-	-	-	no_errors	DDX47	HGNC	ENSG00000213782				203	0	0	171	9	5
ULK1	0	genome.wustl.edu	37	12	132400526	132400526	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	12	132400526	132400526	G	A	SNP	ULK1	ENST00000321867	human	ensembl	74_37	+1	known	missense	c.1700	p.R567H	0.159	pirsf_Ser/Thr_kin_STPK_Ulk-1/2	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ser/Thr_kinase_C,pfam_LipoPS_kinase,pfam_RIO-like_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Ser/Thr_kin_STPK_Ulk-1/2,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	ULK1	HGNC	ENSG00000177169				116	0	0	51	23	31.0811
DDX51	0	genome.wustl.edu	37	12	132626443	132626443	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	12	132626443	132626443	G	A	SNP	DDX51	ENST00000397333	human	ensembl	74_37	-1	known	missense	c.947	p.T316M	0.988	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DDX51	HGNC	ENSG00000185163				99	0	0	62	5	7.46269
GOLGA3	0	genome.wustl.edu	37	12	133350799	133350799	+	Silent	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	12	133350799	133350799	C	T	SNP	GOLGA3	ENST00000204726	human	ensembl	74_37	-1	known	silent	c.4251	p.P1417	0.023	NULL	superfamily_Prefoldin	-	no_errors	GOLGA3	HGNC	ENSG00000090615				72	0	0	47	13	21.6667
GOLGA3	0	genome.wustl.edu	37	12	133365855	133365855	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	12	133365855	133365855	G	A	SNP	GOLGA3	ENST00000204726	human	ensembl	74_37	-1	known	missense	c.2569	p.R857C	0.960	superfamily_Prefoldin	superfamily_Prefoldin	-	no_errors	GOLGA3	HGNC	ENSG00000090615				64	0	0	29	10	25.641
GOLGA3	0	genome.wustl.edu	37	12	133374952	133374952	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	12	133374952	133374952	T	C	SNP	GOLGA3	ENST00000204726	human	ensembl	74_37	-1	known	missense	c.1912	p.I638V	1.000	NULL	superfamily_Prefoldin	-	no_errors	GOLGA3	HGNC	ENSG00000090615				231	0	0	94	55	36.9128
ERP27	0	genome.wustl.edu	37	12	15068460	15068460	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	12	15068460	15068460	T	C	SNP	ERP27	ENST00000266397	human	ensembl	74_37	-1	known	missense	c.737	p.Q246R	0.701	superfamily_Thioredoxin-like_fold	superfamily_Thioredoxin-like_fold	-	no_errors	ERP27	HGNC	ENSG00000139055				138	0	0	82	13	13.6842
ENSG00000256879	0	genome.wustl.edu	37	12	20523192	20523192	+	RNA	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	12	20523192	20523192	A	G	SNP	ENSG00000256879	ENST00000535755	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RP11-284H19.1	Clone_based_vega_gene	ENSG00000256879				47	0	0	37	4	9.7561
CACNA1C	0	genome.wustl.edu	37	12	2162730	2162730	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	12	2162730	2162730	T	C	SNP	CACNA1C	ENST00000399634	human	ensembl	74_37	+1	known	missense	c.2	p.M1T	1.000	NULL	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCC_L_a1csu,prints_VDCCAlpha1,prints_VDCC_L_a1su	-	no_errors	CACNA1C	HGNC	ENSG00000151067				27	0	0	9	5	35.7143
ABCC9	0	genome.wustl.edu	37	12	22025570	22025570	+	Silent	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	12	22025570	22025570	A	G	SNP	ABCC9	ENST00000261200	human	ensembl	74_37	-1	known	silent	c.2187	p.V729	1.000	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_P-loop_NTPase,superfamily_ABC1_TM_dom,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom,prints_Sulphorea_rcpt,prints_Sulphonylurea_rcpt-2	-	no_errors	ABCC9	HGNC	ENSG00000069431				255	0	0	146	50	25.5102
KRAS	0	genome.wustl.edu	37	12	25378562	25378562	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	12	25378562	25378562	C	T	SNP	KRAS	ENST00000256078	human	ensembl	74_37	-1	known	missense	c.436	p.A146T	1.000	pfam_Small_GTPase,pfam_Small_GTPase_ARF/SAR,pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	KRAS	HGNC	ENSG00000133703				175	0	0	99	43	30.2817
RASSF8	0	genome.wustl.edu	37	12	26217646	26217646	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	12	26217646	26217646	C	T	SNP	RASSF8	ENST00000282884	human	ensembl	74_37	+1	known	missense	c.319	p.P107S	1.000	NULL	pfam_Ras-assoc,smart_Ras-assoc,pfscan_Ras-assoc	-	no_errors	RASSF8	HGNC	ENSG00000123094				184	1	0.540541	104	45	30.2013
IPO8	0	genome.wustl.edu	37	12	30833414	30833414	+	Splice_Site	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	12	30833414	30833414	A	G	SNP	IPO8	ENST00000256079	human	ensembl	74_37	-1	known	splice_site	c.639+2	e5+2	0.998	-	-	-	no_errors	IPO8	HGNC	ENSG00000133704				100	0	0	45	17	27.4194
BICD1	0	genome.wustl.edu	37	12	32369202	32369202	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	12	32369202	32369202	A	G	SNP	BICD1	ENST00000281474	human	ensembl	74_37	+1	known	missense	c.235	p.I79V	0.995	pfam_Bicaudal-D_microtubule-assoc	pfam_Bicaudal-D_microtubule-assoc,superfamily_SPOC_like_C_dom	-	no_errors	BICD1	HGNC	ENSG00000151746				118	0	0	82	32	28.0702
PKP2	0	genome.wustl.edu	37	12	33031026	33031026	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	12	33031026	33031026	G	A	SNP	PKP2	ENST00000070846	human	ensembl	74_37	-1	known	missense	c.788	p.T263M	0.092	NULL	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	PKP2	HGNC	ENSG00000057294				91	0	0	48	22	31.4286
SYT10	0	genome.wustl.edu	37	12	33538209	33538209	+	Silent	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	12	33538209	33538209	A	G	SNP	SYT10	ENST00000228567	human	ensembl	74_37	-1	known	silent	c.1095	p.G365	0.447	superfamily_C2_dom	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom,prints_Synaptotagmin,prints_C2_dom	-	no_errors	SYT10	HGNC	ENSG00000110975				68	0	0	45	6	11.7647
ALG10	0	genome.wustl.edu	37	12	34179676	34179676	+	Silent	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	12	34179676	34179676	T	C	SNP	ALG10	ENST00000266483	human	ensembl	74_37	+1	known	silent	c.1248	p.R416	0.997	pfam_Alg10,pirsf_Alg10	pfam_Alg10,pirsf_Alg10	-	no_errors	ALG10	HGNC	ENSG00000139133				370	0	0	247	13	5
CNTN1	0	genome.wustl.edu	37	12	41414173	41414173	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	12	41414173	41414173	A	C	SNP	CNTN1	ENST00000347616	human	ensembl	74_37	+1	known	missense	c.2454	p.K818N	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	CNTN1	HGNC	ENSG00000018236				92	0	0	60	8	11.7647
CNTN1	0	genome.wustl.edu	37	12	41414195	41414195	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	12	41414195	41414195	T	A	SNP	CNTN1	ENST00000347616	human	ensembl	74_37	+1	known	missense	c.2476	p.S826T	0.438	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	CNTN1	HGNC	ENSG00000018236				94	0	0	59	5	7.8125
CNTN1	0	genome.wustl.edu	37	12	41419019	41419019	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	12	41419019	41419019	A	G	SNP	CNTN1	ENST00000347616	human	ensembl	74_37	+1	known	missense	c.2591	p.Y864C	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	CNTN1	HGNC	ENSG00000018236				463	0	0	298	38	11.3095
ZCRB1	0	genome.wustl.edu	37	12	42707747	42707747	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	12	42707747	42707747	G	A	SNP	ZCRB1	ENST00000266529	human	ensembl	74_37	-1	known	silent	c.375	p.L125	0.986	NULL	pfam_RRM_dom,pfam_Znf_CCHC,superfamily_Znf_CCHC,smart_RRM_dom_euk,smart_RRM_dom,smart_Znf_CCHC,pfscan_Znf_CCHC,pfscan_RRM_dom	-	no_errors	ZCRB1	HGNC	ENSG00000139168				150	0	0	125	7	5.30303
ZCRB1	0	genome.wustl.edu	37	12	42711240	42711240	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	12	42711240	42711240	T	C	SNP	ZCRB1	ENST00000266529	human	ensembl	74_37	-1	known	missense	c.235	p.R79G	0.993	pfam_RRM_dom,smart_RRM_dom_euk,smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,pfam_Znf_CCHC,superfamily_Znf_CCHC,smart_RRM_dom_euk,smart_RRM_dom,smart_Znf_CCHC,pfscan_Znf_CCHC,pfscan_RRM_dom	-	no_errors	ZCRB1	HGNC	ENSG00000139168				75	0	0	28	10	26.3158
IRAK4	0	genome.wustl.edu	37	12	44171500	44171500	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	12	44171500	44171500	T	C	SNP	IRAK4	ENST00000448290	human	ensembl	74_37	+1	known	missense	c.784	p.Y262H	0.995	pirsf_IL-1_rcpt-assoc_kin4,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	pirsf_IL-1_rcpt-assoc_kin4,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_DEATH-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	IRAK4	HGNC	ENSG00000198001				155	0	0	98	40	28.9855
ANO6	0	genome.wustl.edu	37	12	45797269	45797269	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	12	45797269	45797269	A	G	SNP	ANO6	ENST00000425752	human	ensembl	74_37	+1	known	missense	c.1830	p.I610M	0.993	pfam_Anoctamin	pfam_Anoctamin	-	no_errors	ANO6	HGNC	ENSG00000177119				207	0	0	90	40	30.7692
ANO6	0	genome.wustl.edu	37	12	45814903	45814903	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	12	45814903	45814903	A	G	SNP	ANO6	ENST00000425752	human	ensembl	74_37	+1	known	missense	c.2267	p.Y756C	1.000	pfam_Anoctamin	pfam_Anoctamin	-	no_errors	ANO6	HGNC	ENSG00000177119				187	0	0	101	44	30.3448
SLC38A4	0	genome.wustl.edu	37	12	47163208	47163208	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	12	47163208	47163208	G	A	SNP	SLC38A4	ENST00000266579	human	ensembl	74_37	-1	known	missense	c.1303	p.R435C	1.000	pfam_AA_transpt_TM	pfam_AA_transpt_TM	-	no_errors	SLC38A4	HGNC	ENSG00000139209				194	0	0	104	33	24.0876
VDR	0	genome.wustl.edu	37	12	48251368	48251368	+	Silent	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	12	48251368	48251368	C	T	SNP	VDR	ENST00000229022	human	ensembl	74_37	-1	known	silent	c.381	p.E127	1.000	superfamily_Nucl_hormone_rcpt_ligand-bd	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_VitD_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt	-	no_errors	VDR	HGNC	ENSG00000111424				167	0	0	92	5	5.15464
GALNT8	0	genome.wustl.edu	37	12	4848407	4848407	+	Silent	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	12	4848407	4848407	T	C	SNP	GALNT8	ENST00000252318	human	ensembl	74_37	+1	known	silent	c.588	p.I196	0.184	pfam_Glyco_trans_2	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	GALNT8	HGNC	ENSG00000130035				135	0	0	98	11	10.0917
KMT2D	0	genome.wustl.edu	37	12	49425292	49425292	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	12	49425292	49425292	A	G	SNP	KMT2D	ENST00000301067	human	ensembl	74_37	-1	known	missense	c.13196	p.L4399P	0.981	NULL	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_box_dom,smart_Znf_PHD,smart_Znf_RING,smart_HMG_box_dom,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	KMT2D	HGNC	ENSG00000167548				46	0	0	19	5	20.8333
KMT2D	0	genome.wustl.edu	37	12	49435307	49435307	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	12	49435307	49435307	G	A	SNP	KMT2D	ENST00000301067	human	ensembl	74_37	-1	known	silent	c.6246	p.S2082	1.000	NULL	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_box_dom,smart_Znf_PHD,smart_Znf_RING,smart_HMG_box_dom,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	KMT2D	HGNC	ENSG00000167548				130	0	0	98	8	7.54717
TROAP	0	genome.wustl.edu	37	12	49719633	49719633	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	12	49719633	49719633	G	A	SNP	TROAP	ENST00000257909	human	ensembl	74_37	+1	known	missense	c.599	p.G200D	0.117	NULL	NULL	-	no_errors	TROAP	HGNC	ENSG00000135451				90	0	0	36	20	35.7143
KCNH3	0	genome.wustl.edu	37	12	49934785	49934785	+	Silent	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	12	49934785	49934785	C	T	SNP	KCNH3	ENST00000257981	human	ensembl	74_37	+1	known	silent	c.180	p.V60	1.000	pfam_PAS_4,pfam_PAS_fold,pfam_PAS_fold_3,superfamily_PAS,pfscan_PAS,tigrfam_PAS	pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom,pfam_cNMP-bd_dom,pfam_PAS_4,pfam_PAS_fold,pfam_PAS_fold_3,superfamily_cNMP-bd-like,superfamily_PAS,smart_PAC,smart_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG/ELK/ERG,prints_K_chnl_volt-dep_ELK,prints_K_chnl_volt-dep_ERG,pfscan_cNMP-bd_dom,pfscan_PAS,pfscan_PAS-assoc_C,tigrfam_PAS	-	no_errors	KCNH3	HGNC	ENSG00000135519				116	0	0	62	28	31.1111
AQP2	0	genome.wustl.edu	37	12	50348487	50348487	+	Silent	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	12	50348487	50348487	C	T	SNP	AQP2	ENST00000199280	human	ensembl	74_37	+1	known	silent	c.600	p.D200	1.000	pfam_MIP,superfamily_Aquaporin-like,tigrfam_MIP	pfam_MIP,superfamily_Aquaporin-like,prints_MIP,tigrfam_MIP	-	no_errors	AQP2	HGNC	ENSG00000167580				206	0	0	111	28	20.1439
RACGAP1	0	genome.wustl.edu	37	12	50387958	50387958	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	12	50387958	50387958	G	A	SNP	RACGAP1	ENST00000312377	human	ensembl	74_37	-1	known	missense	c.1295	p.P432L	1.000	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	pfam_RhoGAP_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_Rho_GTPase_activation_prot,superfamily_Regulat_G_prot_signal_superfam,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_RhoGAP_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_RhoGAP_dom	-	no_errors	RACGAP1	HGNC	ENSG00000161800				339	0	0	206	21	9.2511
ACVRL1	0	genome.wustl.edu	37	12	52309152	52309152	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	12	52309152	52309152	G	A	SNP	ACVRL1	ENST00000550683	human	ensembl	74_37	+1	known	missense	c.958	p.A320T	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_TGF_beta_rcpt_GS,superfamily_Kinase-like_dom,smart_TGF_beta_rcpt_GS,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_TGFB_receptor	-	no_errors	ACVRL1	HGNC	ENSG00000139567				94	0	0	41	17	29.3103
ACVRL1	0	genome.wustl.edu	37	12	52312813	52312813	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	12	52312813	52312813	A	G	SNP	ACVRL1	ENST00000550683	human	ensembl	74_37	+1	known	missense	c.1333	p.N445D	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_TGF_beta_rcpt_GS,superfamily_Kinase-like_dom,smart_TGF_beta_rcpt_GS,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_TGFB_receptor	-	no_errors	ACVRL1	HGNC	ENSG00000139567				158	0	0	101	36	26.2774
KRT121P	0	genome.wustl.edu	37	12	52646140	52646140	+	RNA	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	12	52646140	52646140	G	A	SNP	KRT121P	ENST00000529785	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	KRT121P	HGNC	ENSG00000135477				147	0	0	96	10	9.43396
MFSD5	0	genome.wustl.edu	37	12	53647543	53647543	+	Silent	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	12	53647543	53647543	C	T	SNP	MFSD5	ENST00000534842	human	ensembl	74_37	+1	known	silent	c.1245	p.H415	1.000	pfam_DUF791,pfam_MFS,superfamily_MFS_dom_general_subst_transpt	pfam_DUF791,pfam_MFS,superfamily_MFS_dom_general_subst_transpt	-	no_errors	MFSD5	HGNC	ENSG00000182544				185	0	0	102	50	32.8947
SP1	0	genome.wustl.edu	37	12	53776296	53776296	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	12	53776296	53776296	T	C	SNP	SP1	ENST00000327443	human	ensembl	74_37	+1	known	missense	c.565	p.F189L	0.999	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	SP1	HGNC	ENSG00000185591				188	0	0	142	20	12.3457
CALCOCO1	0	genome.wustl.edu	37	12	54115379	54115379	+	Silent	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	12	54115379	54115379	C	T	SNP	CALCOCO1	ENST00000550804	human	ensembl	74_37	-1	known	silent	c.630	p.G210	1.000	pfam_CoCoA	pfam_CoCoA	-	no_errors	CALCOCO1	HGNC	ENSG00000012822				825	0	0	431	212	32.9705
PPP1R1A	0	genome.wustl.edu	37	12	54971212	54971212	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	12	54971212	54971212	T	C	SNP	PPP1R1A	ENST00000547431	human	ensembl	74_37	-1	novel	missense	c.422	p.H141R	0.000	NULL	pfam_PPI_1DARPP-32	-	no_errors	PPP1R1A	HGNC	ENSG00000135447				439	0	0	332	36	9.78261
ITGA7	0	genome.wustl.edu	37	12	56086971	56086971	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	12	56086971	56086971	G	T	SNP	ITGA7	ENST00000555728	human	ensembl	74_37	-1	known	missense	c.2798	p.P933H	0.964	pfam_Integrin_alpha-2	pfam_Integrin_alpha-2,pfam_FG-GAP,smart_Int_alpha_beta-p,prints_Integrin_alpha	-	no_errors	ITGA7	HGNC	ENSG00000135424				207	0	0	99	47	32.1918
DNAJC14	0	genome.wustl.edu	37	12	56221646	56221646	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	12	56221646	56221646	A	G	SNP	DNAJC14	ENST00000317269	human	ensembl	74_37	-1	known	missense	c.797	p.V266A	0.998	NULL	pfam_DnaJ_domain,superfamily_DnaJ_domain,smart_DnaJ_domain,pfscan_DnaJ_domain,prints_DnaJ_domain	-	no_errors	DNAJC14	HGNC	ENSG00000135392				150	0	0	48	17	26.1538
ERBB3	0	genome.wustl.edu	37	12	56487146	56487146	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	12	56487146	56487146	T	C	SNP	ERBB3	ENST00000267101	human	ensembl	74_37	+1	known	missense	c.1292	p.L431S	1.000	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_EGF_rcpt_L	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Furin-like_Cys-rich_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt_N_dom,smart_Furin_repeat,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	ERBB3	HGNC	ENSG00000065361				195	0	0	133	7	5
ZC3H10	0	genome.wustl.edu	37	12	56515288	56515288	+	Silent	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	12	56515288	56515288	T	C	SNP	ZC3H10	ENST00000257940	human	ensembl	74_37	+1	known	silent	c.942	p.T314	0.998	NULL	pfam_Znf_CCCH,smart_Znf_CCCH	-	no_errors	ZC3H10	HGNC	ENSG00000135482				90	0	0	52	3	5.45455
TIMELESS	0	genome.wustl.edu	37	12	56817439	56817439	+	Silent	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	12	56817439	56817439	C	T	SNP	TIMELESS	ENST00000553532	human	ensembl	74_37	-1	known	silent	c.2019	p.E673	1.000	NULL	pfam_TIMELESS_C,pfam_Timeless	-	no_errors	TIMELESS	HGNC	ENSG00000111602				55	0	0	48	5	9.43396
NACA	0	genome.wustl.edu	37	12	57110008	57110008	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	12	57110008	57110008	G	A	SNP	NACA	ENST00000454682	human	ensembl	74_37	-1	known	missense	c.5306	p.A1769V	0.000	NULL	pfam_Nas_poly-pep-assoc_cplx_dom,superfamily_UBA-like,pfscan_Nas_poly-pep-assoc_cplx_dom	-	no_errors	NACA	HGNC	ENSG00000196531				75	0	0	63	20	24.0964
SDR9C7	0	genome.wustl.edu	37	12	57317808	57317808	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	12	57317808	57317808	G	A	SNP	SDR9C7	ENST00000293502	human	ensembl	74_37	-1	known	nonsense	c.751	p.Q251*	0.267	NULL	pfam_DH_sc/Rdtase_SDR,prints_Glc/ribitol_DH,prints_DH_sc/Rdtase_SDR	-	no_errors	SDR9C7	HGNC	ENSG00000170426				111	0	0	95	5	5
MYO1A	0	genome.wustl.edu	37	12	57423603	57423603	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	12	57423603	57423603	A	G	SNP	MYO1A	ENST00000300119	human	ensembl	74_37	-1	known	missense	c.2645	p.L882P	1.000	pfam_Myosin_tail_2	pfam_Myosin_head_motor_dom,pfam_Myosin_tail_2,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS	-	no_errors	MYO1A	HGNC	ENSG00000166866				170	0	0	83	41	33.0645
LRP1	0	genome.wustl.edu	37	12	57571369	57571369	+	Silent	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	12	57571369	57571369	C	T	SNP	LRP1	ENST00000243077	human	ensembl	74_37	+1	known	silent	c.4356	p.D1452	0.967	smart_LDLR_classB_rpt,pfscan_LDLR_classB_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP1	HGNC	ENSG00000123384				58	0	0	23	17	42.5
LRP1	0	genome.wustl.edu	37	12	57592013	57592013	+	Silent	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	12	57592013	57592013	C	T	SNP	LRP1	ENST00000243077	human	ensembl	74_37	+1	known	silent	c.9357	p.C3119	0.756	pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt_N_dom,smart_LDLR_classB_rpt,pfscan_LDLR_classB_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP1	HGNC	ENSG00000123384				55	0	0	28	12	30
LRP1	0	genome.wustl.edu	37	12	57592261	57592261	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	12	57592261	57592261	A	G	SNP	LRP1	ENST00000243077	human	ensembl	74_37	+1	known	missense	c.9484	p.T3162A	1.000	pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt_N_dom,smart_LDLR_classB_rpt,pfscan_LDLR_classB_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP1	HGNC	ENSG00000123384				56	0	0	40	6	13.0435
KIF5A	0	genome.wustl.edu	37	12	57957311	57957311	+	Splice_Site	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	12	57957311	57957311	T	C	SNP	KIF5A	ENST00000455537	human	ensembl	74_37	+1	known	splice_site	c.217+2	e2+2	1.000	-	-	-	no_errors	KIF5A	HGNC	ENSG00000155980				121	0	0	89	15	14.4231
VWF	0	genome.wustl.edu	37	12	6230409	6230409	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	12	6230409	6230409	A	G	SNP	VWF	ENST00000261405	human	ensembl	74_37	-1	known	missense	c.151	p.Y51H	1.000	pirsf_VWF,pfam_VWF_type-D,smart_VWF_type-D	pirsf_VWF,pfam_VWF_type-D,pfam_VWF_A,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,pfam_VWF_C,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_VWF_A,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_A,pfscan_VWF_C	-	no_errors	VWF	HGNC	ENSG00000110799				107	0	0	54	21	28
PPM1H	0	genome.wustl.edu	37	12	63195910	63195910	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	12	63195910	63195910	A	G	SNP	PPM1H	ENST00000228705	human	ensembl	74_37	-1	known	missense	c.442	p.S148P	1.000	superfamily_PP2C-like_dom,smart_PP2C-like_dom	pfam_PP2C-like_dom,superfamily_PP2C-like_dom,smart_PP2C-like_dom	-	no_errors	PPM1H	HGNC	ENSG00000111110				59	0	0	37	12	24.4898
SRGAP1	0	genome.wustl.edu	37	12	64505760	64505760	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	12	64505760	64505760	A	G	SNP	SRGAP1	ENST00000355086	human	ensembl	74_37	+1	known	missense	c.2138	p.D713G	1.000	NULL	pfam_RhoGAP_dom,pfam_FCH_dom,pfam_SH3_domain,pfam_SH3_2,superfamily_Rho_GTPase_activation_prot,superfamily_SH3_domain,superfamily_Fuc/Ara_isomerase_C,smart_FCH_dom,smart_RhoGAP_dom,smart_SH3_domain,pfscan_FCH_dom,pfscan_SH3_domain,pfscan_RhoGAP_dom	-	no_errors	SRGAP1	HGNC	ENSG00000196935				119	0	0	51	29	36.25
HMGA2	0	genome.wustl.edu	37	12	66308838	66308838	+	Splice_Site	SNP	G	G	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	12	66308838	66308838	G	T	SNP	HMGA2	ENST00000354636	human	ensembl	74_37	+1	known	splice_site	c.250-1	e4-1	0.001	-	-	-	no_errors	HMGA2	HGNC	ENSG00000149948				311	0	0	142	46	24.4681
NCAPD2	0	genome.wustl.edu	37	12	6632385	6632385	+	RNA	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	12	6632385	6632385	T	C	SNP	NCAPD2	ENST00000542492	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	NCAPD2	HGNC	ENSG00000010292				137	0	0	86	27	23.8938
IRAK3	0	genome.wustl.edu	37	12	66641827	66641827	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	12	66641827	66641827	C	A	SNP	IRAK3	ENST00000261233	human	ensembl	74_37	+1	known	missense	c.1667	p.P556H	0.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Death_domain,superfamily_Kinase-like_dom,superfamily_DEATH-like_dom,smart_Death_domain,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Death_domain,pfscan_Prot_kinase_dom	-	no_errors	IRAK3	HGNC	ENSG00000090376				317	0	0	166	58	25.8929
HELB	0	genome.wustl.edu	37	12	66703603	66703603	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	12	66703603	66703603	T	C	SNP	HELB	ENST00000247815	human	ensembl	74_37	+1	known	missense	c.895	p.S299P	0.059	NULL	superfamily_P-loop_NTPase	-	no_errors	HELB	HGNC	ENSG00000127311				279	0	0	207	22	9.60699
CHD4	0	genome.wustl.edu	37	12	6700956	6700956	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	12	6700956	6700956	G	A	SNP	CHD4	ENST00000309577	human	ensembl	74_37	-1	known	silent	c.3126	p.G1042	1.000	pfam_HDA_complex_subunit-2/3,superfamily_P-loop_NTPase	pfam_CHD_C2,pfam_DUF1086,pfam_SNF2_N,pfam_CHD_N,pfam_DUF1087,pfam_Znf_PHD-finger,pfam_Chromo_domain,pfam_Helicase_C,pfam_HDA_complex_subunit-2/3,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,superfamily_Chromodomain-like,superfamily_Znf_FYVE_PHD,superfamily_HMG_box_dom,superfamily_Homeodomain-like,smart_Znf_PHD,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Znf_PHD-finger,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD4	HGNC	ENSG00000111642				156	0	0	114	9	7.31707
NINJ2	0	genome.wustl.edu	37	12	675056	675056	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	12	675056	675056	G	A	SNP	NINJ2	ENST00000433832	human	ensembl	74_37	-1	putative	missense	c.214	p.P72S	0.000	NULL	pfam_Ninjurin	-	no_errors	NINJ2	HGNC	ENSG00000171840				53	0	0	34	4	10.5263
IFNG	0	genome.wustl.edu	37	12	68552014	68552014	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	12	68552014	68552014	T	A	SNP	IFNG	ENST00000229135	human	ensembl	74_37	-1	known	missense	c.140	p.D47V	0.000	pfam_Interferon_gamma,superfamily_4_helix_cytokine-like_core,pirsf_Interferon_gamma	pfam_Interferon_gamma,superfamily_4_helix_cytokine-like_core,pirsf_Interferon_gamma	-	no_errors	IFNG	HGNC	ENSG00000111537				32	0	0	18	8	30.7692
NUP107	0	genome.wustl.edu	37	12	69135681	69135681	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	12	69135681	69135681	T	C	SNP	NUP107	ENST00000229179	human	ensembl	74_37	+1	known	missense	c.2591	p.I864T	0.860	pfam_Nup84_Nup100	pfam_Nup84_Nup100	-	no_errors	NUP107	HGNC	ENSG00000111581				197	0	0	92	45	32.8467
CPM	0	genome.wustl.edu	37	12	69250279	69250279	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	12	69250279	69250279	C	T	SNP	CPM	ENST00000338356	human	ensembl	74_37	-1	known	missense	c.1270	p.A424T	0.555	NULL	pfam_Peptidase_M14,pfam_Aste_AspA,superfamily_CarboxyPept-like_regulatory,smart_Peptidase_M14,prints_Peptidase_M14	-	no_errors	CPM	HGNC	ENSG00000135678				173	0	0	98	42	30
GPR162	0	genome.wustl.edu	37	12	6933831	6933831	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	12	6933831	6933831	C	T	SNP	GPR162	ENST00000311268	human	ensembl	74_37	+1	known	missense	c.767	p.S256L	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPR162,prints_GCR_153/162	-	no_errors	GPR162	HGNC	ENSG00000250510				101	0	0	41	28	40.5797
PTPN6	0	genome.wustl.edu	37	12	7069334	7069334	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	12	7069334	7069334	T	C	SNP	PTPN6	ENST00000456013	human	ensembl	74_37	+1	known	missense	c.1513	p.Y505H	1.000	pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pirsf_Tyr_Pase_non-rcpt_typ-6/11,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_SH2,smart_SH2,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pirsf_Tyr_Pase_non-rcpt_typ-6/11,pfscan_SH2,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt,prints_SH2	-	no_errors	PTPN6	HGNC	ENSG00000111679				78	0	0	55	22	28.5714
ENSG00000258168	0	genome.wustl.edu	37	12	70932062	70932062	+	RNA	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	12	70932062	70932062	A	G	SNP	ENSG00000258168	ENST00000546836	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RP11-588H23.3	Clone_based_vega_gene	ENSG00000258168				44	0	0	26	13	33.3333
PTPRB	0	genome.wustl.edu	37	12	71029640	71029640	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	12	71029640	71029640	A	G	SNP	PTPRB	ENST00000334414	human	ensembl	74_37	-1	known	missense	c.262	p.S88P	0.998	pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,pfscan_Ricin_B_lectin	pfam_Fibronectin_type3,pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Ricin_B_lectin,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRB	HGNC	ENSG00000127329				57	0	0	28	11	28.2051
LGR5	0	genome.wustl.edu	37	12	71974204	71974204	+	Splice_Site	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	12	71974204	71974204	G	A	SNP	LGR5	ENST00000266674	human	ensembl	74_37	+1	known	splice_site	c.1552+1	e16+1	1.000	-	-	-	no_errors	LGR5	HGNC	ENSG00000139292				386	0	0	242	73	23.1746
ENSG00000257761	0	genome.wustl.edu	37	12	71977313	71977313	+	RNA	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	12	71977313	71977313	G	A	SNP	ENSG00000257761	ENST00000546601	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RP11-186F10.2	Clone_based_vega_gene	ENSG00000257761				54	0	0	29	11	27.5
CSRP2	0	genome.wustl.edu	37	12	77253398	77253398	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	12	77253398	77253398	C	T	SNP	CSRP2	ENST00000311083	human	ensembl	74_37	-1	known	missense	c.434	p.R145Q	1.000	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	CSRP2	HGNC	ENSG00000175183				77	0	0	33	10	23.2558
E2F7	0	genome.wustl.edu	37	12	77449854	77449854	+	Silent	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	12	77449854	77449854	T	C	SNP	E2F7	ENST00000322886	human	ensembl	74_37	-1	known	silent	c.150	p.E50	0.998	NULL	pfam_E2F_TDP	-	no_errors	E2F7	HGNC	ENSG00000165891				193	0	0	127	8	5.92593
SLC2A3	0	genome.wustl.edu	37	12	8083863	8083863	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	12	8083863	8083863	A	G	SNP	SLC2A3	ENST00000075120	human	ensembl	74_37	-1	known	missense	c.488	p.V163A	0.993	pfam_Sub_transporter,pfam_MFS,pfam_Folate_carrier,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Sugar/inositol_transpt	pfam_Sub_transporter,pfam_MFS,pfam_Folate_carrier,superfamily_MFS_dom_general_subst_transpt,prints_Sugar/inositol_transpt,prints_Glc_transpt_3,pfscan_MFS_dom,tigrfam_Sugar/inositol_transpt	-	no_errors	SLC2A3	HGNC	ENSG00000059804				112	0	0	52	32	38.0952
C3AR1	0	genome.wustl.edu	37	12	8211659	8211659	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	12	8211659	8211659	T	C	SNP	C3AR1	ENST00000307637	human	ensembl	74_37	-1	known	missense	c.1123	p.T375A	0.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Anaphtx_C3AR1,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Anaphtx_C3AR1,prints_GPCR_Rhodpsn,prints_Anphylx_rcpt,prints_Formyl_pep_rcpt,prints_Anaphtx_C5AR1/C5AR2	-	no_errors	C3AR1	HGNC	ENSG00000171860				102	0	0	52	15	22.3881
TMTC2	0	genome.wustl.edu	37	12	83359353	83359353	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	12	83359353	83359353	A	G	SNP	TMTC2	ENST00000321196	human	ensembl	74_37	+1	known	missense	c.1699	p.T567A	1.000	smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	pfam_TPR_1,pfam_TPR_2,pfam_DUF1736,pfam_TPR-4,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TMTC2	HGNC	ENSG00000179104				195	0	0	83	39	31.9672
LRRIQ1	0	genome.wustl.edu	37	12	85450662	85450662	+	Silent	SNP	A	A	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	12	85450662	85450662	A	T	SNP	LRRIQ1	ENST00000393217	human	ensembl	74_37	+1	known	silent	c.2091	p.V697	0.009	NULL	pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,smart_IQ_motif_EF-hand-BS,smart_Leu-rich_rpt_typical-subtyp,pfscan_IQ_motif_EF-hand-BS	-	no_errors	LRRIQ1	HGNC	ENSG00000133640				269	0	0	109	48	30.5732
RASSF9	0	genome.wustl.edu	37	12	86198792	86198792	+	Silent	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	12	86198792	86198792	A	G	SNP	RASSF9	ENST00000361228	human	ensembl	74_37	-1	known	silent	c.996	p.I332	1.000	NULL	smart_Ras-assoc,pfscan_Ras-assoc	-	no_errors	RASSF9	HGNC	ENSG00000198774				416	0	0	245	34	12.1864
EPYC	0	genome.wustl.edu	37	12	91358019	91358019	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	12	91358019	91358019	G	A	SNP	EPYC	ENST00000261172	human	ensembl	74_37	-1	known	nonsense	c.883	p.R295*	1.000	NULL	pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	EPYC	HGNC	ENSG00000083782				119	0	0	83	43	34.127
PLEKHG7	0	genome.wustl.edu	37	12	93162797	93162797	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	12	93162797	93162797	A	G	SNP	PLEKHG7	ENST00000344636	human	ensembl	74_37	+1	known	missense	c.973	p.N325D	1.000	smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PLEKHG7	HGNC	ENSG00000187510				25	0	0	11	4	26.6667
SOCS2	0	genome.wustl.edu	37	12	93968638	93968638	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	12	93968638	93968638	A	G	SNP	SOCS2	ENST00000340600	human	ensembl	74_37	+1	known	missense	c.280	p.N94D	1.000	pfam_SH2,smart_SH2,pfscan_SH2	pfam_SOCS_C,pfam_SH2,smart_SH2,smart_SOCS_C,pfscan_SOCS_C,pfscan_SH2,prints_SH2	-	no_errors	SOCS2	HGNC	ENSG00000120833				134	0	0	51	29	36.25
SOCS2	0	genome.wustl.edu	37	12	93968662	93968662	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	12	93968662	93968662	G	A	SNP	SOCS2	ENST00000340600	human	ensembl	74_37	+1	known	missense	c.304	p.G102R	1.000	pfam_SH2,smart_SH2,pfscan_SH2	pfam_SOCS_C,pfam_SH2,smart_SH2,smart_SOCS_C,pfscan_SOCS_C,pfscan_SH2,prints_SH2	-	no_errors	SOCS2	HGNC	ENSG00000120833				124	0	0	54	29	34.9398
PLXNC1	0	genome.wustl.edu	37	12	94580155	94580155	+	Nonsense_Mutation	SNP	A	A	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	12	94580155	94580155	A	T	SNP	PLXNC1	ENST00000258526	human	ensembl	74_37	+1	known	nonsense	c.1345	p.R449*	1.000	superfamily_Semap_dom,pfscan_Semap_dom	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_Plexin_repeat,pfam_IPT,superfamily_Semap_dom,superfamily_Rho_GTPase_activation_prot,superfamily_Plexin-like_fold,superfamily_Ig_E-set,smart_Semap_dom,smart_Plexin-like_fold,smart_IPT,pfscan_Semap_dom	-	no_errors	PLXNC1	HGNC	ENSG00000136040				107	1	0.925926	43	17	28.3333
FGD6	0	genome.wustl.edu	37	12	95603554	95603554	+	Silent	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	12	95603554	95603554	A	G	SNP	FGD6	ENST00000343958	human	ensembl	74_37	-1	known	silent	c.1506	p.H502	1.000	NULL	pfam_DH-domain,pfam_Pleckstrin_homology,pfam_Znf_FYVE,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,smart_Znf_FYVE,pfscan_Pleckstrin_homology,pfscan_Znf_FYVE-rel,pfscan_DH-domain	-	no_errors	FGD6	HGNC	ENSG00000180263				280	0	0	152	62	28.972
ELK3	0	genome.wustl.edu	37	12	96641161	96641161	+	Silent	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	12	96641161	96641161	C	T	SNP	ELK3	ENST00000228741	human	ensembl	74_37	+1	known	silent	c.651	p.S217	0.061	NULL	pfam_Ets_dom,smart_Ets_dom,pfscan_Ets_dom,prints_Ets_dom	-	no_errors	ELK3	HGNC	ENSG00000111145				160	0	0	80	45	36
C12orf55	0	genome.wustl.edu	37	12	97098550	97098550	+	Silent	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	12	97098550	97098550	T	C	SNP	C12orf55	ENST00000524981	human	ensembl	74_37	+1	putative	silent	c.6504	p.L2168	0.997	NULL	superfamily_Fibronectin_type3	-	no_errors	C12orf55	HGNC	ENSG00000188596				30	0	0	15	4	21.0526
C12orf55	0	genome.wustl.edu	37	12	97102450	97102450	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	12	97102450	97102450	T	C	SNP	C12orf55	ENST00000524981	human	ensembl	74_37	+1	putative	missense	c.6593	p.L2198P	0.958	NULL	superfamily_Fibronectin_type3	-	no_errors	C12orf55	HGNC	ENSG00000188596				114	0	0	95	11	10.3774
SLC9A7P1	0	genome.wustl.edu	37	12	98849710	98849710	+	RNA	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	12	98849710	98849710	A	G	SNP	SLC9A7P1	ENST00000554295	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.003	-	-	-	no_errors	SLC9A7P1	HGNC	ENSG00000227825				158	0	0	124	7	5.34351
ANKS1B	0	genome.wustl.edu	37	12	99174974	99174974	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	12	99174974	99174974	G	A	SNP	ANKS1B	ENST00000547362	human	ensembl	74_37	-1	known	nonsense	c.313	p.Q105*	1.000	NULL	NULL	-	no_errors	ANKS1B	HGNC	ENSG00000185046				12	0	0	4	4	50
TM9SF2	0	genome.wustl.edu	37	13	100196200	100196200	+	Silent	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	13	100196200	100196200	C	T	SNP	TM9SF2	ENST00000376387	human	ensembl	74_37	+1	known	silent	c.1101	p.V367	1.000	pfam_EMP70	pfam_EMP70	-	no_errors	TM9SF2	HGNC	ENSG00000125304				214	0	0	136	13	8.72483
PCCA	0	genome.wustl.edu	37	13	100909900	100909900	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	13	100909900	100909900	G	A	SNP	PCCA	ENST00000376285	human	ensembl	74_37	+1	known	missense	c.689	p.R230H	1.000	pfam_CbamoylP_synth_lsu-like_ATP-bd,pfam_Dala_Dala_lig_C,pfam_ATP-grasp_RimK-type,pfam_ATP-grasp_carboxylate-amine,pfscan_ATP-grasp,pfscan_Biotin_carboxylation_dom	pfam_CbamoylP_synth_lsu-like_ATP-bd,pfam_CarbamoylP_synth_lsu_N,pfam_Biotin_COase_C,pfam_Biotin_lipoyl,pfam_Dala_Dala_lig_C,pfam_ATP-grasp_RimK-type,pfam_ATP-grasp_carboxylate-amine,superfamily_PreATP-grasp_dom,superfamily_Rudment_hybrid_motif,superfamily_Single_hybrid_motif,smart_Biotin_COase_C,pfscan_ATP-grasp,pfscan_Biotin_carboxylation_dom,pfscan_Biotin_lipoyl	-	no_errors	PCCA	HGNC	ENSG00000175198				75	0	0	29	10	25.641
NALCN	0	genome.wustl.edu	37	13	101797171	101797171	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	13	101797171	101797171	T	C	SNP	NALCN	ENST00000251127	human	ensembl	74_37	-1	known	missense	c.1916	p.N639S	1.000	NULL	pfam_Ion_trans_dom	-	no_errors	NALCN	HGNC	ENSG00000102452				424	0	0	289	34	10.5263
FGF14	0	genome.wustl.edu	37	13	102375275	102375275	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	13	102375275	102375275	G	A	SNP	FGF14	ENST00000376131	human	ensembl	74_37	-1	known	missense	c.665	p.T222M	1.000	superfamily_Cytokine_IL1-like	pfam_Fibroblast_GF_fam,superfamily_Cytokine_IL1-like,smart_Fibroblast_GF_fam,prints_Fibroblast_GF_fam,prints_IL-1_fam/FGF_fam	-	no_errors	FGF14	HGNC	ENSG00000102466				147	0	0	70	33	32.0388
BIVM	0	genome.wustl.edu	37	13	103474505	103474505	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	13	103474505	103474505	A	C	SNP	BIVM	ENST00000257336	human	ensembl	74_37	+1	known	missense	c.897	p.E299D	1.000	NULL	NULL	-	no_errors	BIVM	HGNC	ENSG00000134897				127	0	0	53	22	29.3333
RAB20	0	genome.wustl.edu	37	13	111176256	111176256	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	13	111176256	111176256	G	A	SNP	RAB20	ENST00000267328	human	ensembl	74_37	-1	known	missense	c.461	p.A154V	1.000	pfam_Small_GTPase,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB20	HGNC	ENSG00000139832				124	0	0	75	20	21.0526
F7	0	genome.wustl.edu	37	13	113770010	113770010	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	13	113770010	113770010	G	A	SNP	F7	ENST00000375581	human	ensembl	74_37	+1	known	missense	c.467	p.G156D	0.992	pirsf_Pept_S1A_FX,smart_EG-like_dom	pirsf_Pept_S1A_FX,pfam_Peptidase_S1,pfam_GLA_domain,pfam_Peptidase_S1A_nudel,pfam_EG-like_dom,superfamily_Trypsin-like_Pept_dom,superfamily_GLA_domain,smart_GLA_domain,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_Peptidase_S1,prints_Peptidase_S1A,prints_GLA_domain,pfscan_EG-like_dom,pfscan_GLA_domain,pfscan_Peptidase_S1	-	no_errors	F7	HGNC	ENSG00000057593				51	0	0	36	10	21.7391
F7	0	genome.wustl.edu	37	13	113772918	113772918	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	13	113772918	113772918	C	A	SNP	F7	ENST00000375581	human	ensembl	74_37	+1	known	missense	c.997	p.L333M	0.993	pirsf_Pept_S1A_FX,pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1	pirsf_Pept_S1A_FX,pfam_Peptidase_S1,pfam_GLA_domain,pfam_Peptidase_S1A_nudel,pfam_EG-like_dom,superfamily_Trypsin-like_Pept_dom,superfamily_GLA_domain,smart_GLA_domain,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_Peptidase_S1,prints_Peptidase_S1A,prints_GLA_domain,pfscan_EG-like_dom,pfscan_GLA_domain,pfscan_Peptidase_S1	-	no_errors	F7	HGNC	ENSG00000057593				108	0	0	37	18	32.7273
PCID2	0	genome.wustl.edu	37	13	113845128	113845128	+	RNA	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	13	113845128	113845128	G	A	SNP	PCID2	ENST00000491548	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	PCID2	HGNC	ENSG00000126226				31	0	0	12	4	25
LAMP1	0	genome.wustl.edu	37	13	113965127	113965127	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	13	113965127	113965127	G	A	SNP	LAMP1	ENST00000332556	human	ensembl	74_37	+1	known	silent	c.507	p.T169	0.000	pfam_Lysosome-assoc_membr_glycop	pfam_Lysosome-assoc_membr_glycop,prints_Lysosome-assoc_membr_glycop	-	no_errors	LAMP1	HGNC	ENSG00000185896				174	1	0.571429	70	31	30.6931
TFDP1	0	genome.wustl.edu	37	13	114286166	114286166	+	RNA	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	13	114286166	114286166	C	T	SNP	TFDP1	ENST00000465174	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.003	-	-	-	no_errors	TFDP1	HGNC	ENSG00000198176				18	0	0	8	5	38.4615
GJB6	0	genome.wustl.edu	37	13	20797216	20797216	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	13	20797216	20797216	G	A	SNP	GJB6	ENST00000241124	human	ensembl	74_37	-1	known	missense	c.404	p.T135M	0.999	prints_Connexin	pfam_Connexin_N,pfam_Connexin_CCC,smart_Connexin_N,prints_Connexin	-	no_errors	GJB6	HGNC	ENSG00000121742				113	0	0	73	32	30.4762
LATS2	0	genome.wustl.edu	37	13	21557671	21557671	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	13	21557671	21557671	T	C	SNP	LATS2	ENST00000382592	human	ensembl	74_37	-1	known	missense	c.2174	p.N725S	0.999	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_UBA-like,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Prot_kinase_dom	-	no_errors	LATS2	HGNC	ENSG00000150457				302	0	0	192	12	5.88235
SGCG	0	genome.wustl.edu	37	13	23853591	23853591	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	13	23853591	23853591	T	C	SNP	SGCG	ENST00000218867	human	ensembl	74_37	+1	known	missense	c.479	p.V160A	0.990	pfam_Sarcoglycan	pfam_Sarcoglycan	-	no_errors	SGCG	HGNC	ENSG00000102683				68	0	0	35	18	33.9623
SACS	0	genome.wustl.edu	37	13	23906235	23906235	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	13	23906235	23906235	G	A	SNP	SACS	ENST00000382292	human	ensembl	74_37	-1	known	missense	c.11780	p.A3927V	1.000	NULL	pfam_HEPN,pfam_Ubiquitin_dom,superfamily_HATPase_ATP-bd,superfamily_DnaJ_domain,smart_HEPN,pfscan_HEPN,pfscan_DnaJ_domain,pfscan_Ubiquitin_supergroup	-	no_errors	SACS	HGNC	ENSG00000151835				265	0	0	134	61	31.2821
SACS	0	genome.wustl.edu	37	13	23914771	23914771	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	13	23914771	23914771	C	T	SNP	SACS	ENST00000382292	human	ensembl	74_37	-1	known	missense	c.3244	p.D1082N	1.000	NULL	pfam_HEPN,pfam_Ubiquitin_dom,superfamily_HATPase_ATP-bd,superfamily_DnaJ_domain,smart_HEPN,pfscan_HEPN,pfscan_DnaJ_domain,pfscan_Ubiquitin_supergroup	-	no_errors	SACS	HGNC	ENSG00000151835				412	0	0	187	99	34.6154
SPATA13	0	genome.wustl.edu	37	13	24823711	24823711	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	13	24823711	24823711	C	T	SNP	SPATA13	ENST00000382108	human	ensembl	74_37	+1	known	missense	c.1750	p.R584W	0.272	NULL	pfam_DH-domain,pfam_SH3_domain,pfam_SH3_2,pfam_Pleckstrin_homology,superfamily_DH-domain,superfamily_SH3_domain,smart_SH3_domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_DH-domain	-	no_errors	SPATA13	HGNC	ENSG00000182957				107	0	0	51	22	30.137
CENPJ	0	genome.wustl.edu	37	13	25480479	25480479	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	13	25480479	25480479	C	T	SNP	CENPJ	ENST00000381884	human	ensembl	74_37	-1	known	missense	c.1697	p.R566Q	0.909	NULL	pfam_Tcp10_C_dom	-	no_errors	CENPJ	HGNC	ENSG00000151849				126	0	0	59	33	35.8696
PABPC3	0	genome.wustl.edu	37	13	25670497	25670497	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	13	25670497	25670497	A	G	SNP	PABPC3	ENST00000281589	human	ensembl	74_37	+1	known	missense	c.161	p.Y54C	1.000	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,tigrfam_PABP_1234	pfam_RRM_dom,pfam_PABP_HYD,superfamily_PABP_HYD,smart_RRM_dom,smart_RRM_dom_euk,smart_PABP_HYD,pfscan_RRM_dom,tigrfam_PABP_1234	-	no_errors	PABPC3	HGNC	ENSG00000151846				147	0	0	71	25	26.0417
AMER2	0	genome.wustl.edu	37	13	25745036	25745036	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	13	25745036	25745036	G	A	SNP	AMER2	ENST00000515384	human	ensembl	74_37	-1	known	missense	c.722	p.T241M	0.393	pfam_Uncharacterised_FAM123	pfam_Uncharacterised_FAM123	-	no_errors	AMER2	HGNC	ENSG00000165566				29	0	0	15	12	44.4444
GPR12	0	genome.wustl.edu	37	13	27333371	27333371	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	13	27333371	27333371	G	A	SNP	GPR12	ENST00000381436	human	ensembl	74_37	-1	known	silent	c.594	p.N198	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPR_3/6/12_orphan,prints_GPR12,prints_GPCR_Rhodpsn	-	no_errors	GPR12	HGNC	ENSG00000132975				119	0	0	62	17	21.519
LNX2	0	genome.wustl.edu	37	13	28124542	28124542	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	13	28124542	28124542	T	C	SNP	LNX2	ENST00000316334	human	ensembl	74_37	-1	known	missense	c.1865	p.N622S	1.000	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_PDZ,pfam_Znf_C3HC4_RING-type,superfamily_PDZ,superfamily_TRAF-like,smart_Znf_RING,smart_PDZ,pfscan_PDZ,pfscan_Znf_RING	-	no_errors	LNX2	HGNC	ENSG00000139517				118	0	0	70	28	28.5714
GSX1	0	genome.wustl.edu	37	13	28367838	28367838	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	13	28367838	28367838	A	G	SNP	GSX1	ENST00000302945	human	ensembl	74_37	+1	known	missense	c.548	p.Y183C	1.000	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa	-	no_errors	GSX1	HGNC	ENSG00000169840				179	0	0	92	21	18.5841
PAN3	0	genome.wustl.edu	37	13	28862160	28862160	+	Silent	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	13	28862160	28862160	T	C	SNP	PAN3	ENST00000380958	human	ensembl	74_37	+1	known	silent	c.2424	p.R808	0.858	NULL	superfamily_Kinase-like_dom,smart_Znf_CCCH,pfscan_Prot_kinase_dom	-	no_errors	PAN3	HGNC	ENSG00000152520				100	0	0	79	5	5.95238
MTUS2-AS1	0	genome.wustl.edu	37	13	30062217	30062217	+	RNA	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	13	30062217	30062217	A	G	SNP	MTUS2-AS1	ENST00000323380	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	MTUS2-AS1	HGNC	ENSG00000179141				27	0	0	13	5	27.7778
HSPH1	0	genome.wustl.edu	37	13	31717998	31717998	+	Silent	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	13	31717998	31717998	T	C	SNP	HSPH1	ENST00000445273	human	ensembl	74_37	-1	known	silent	c.1653	p.Q551	0.048	pfam_Hsp_70_fam	pfam_Hsp_70_fam,pfam_MreB_Mrl,prints_Hsp_70_fam	-	no_errors	HSPH1	HGNC	ENSG00000120694				215	0	0	149	9	5.6962
BRCA2	0	genome.wustl.edu	37	13	32913347	32913347	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	13	32913347	32913347	A	G	SNP	BRCA2	ENST00000380152	human	ensembl	74_37	+1	known	missense	c.4855	p.N1619D	0.000	pirsf_BRCA2	pfam_DNA_recomb/repair_BRCA2_hlx,pfam_BRCA2_repeat,pfam_BRCA2_OB_3,pfam_BRCA2_OB_1,pfam_Tower,superfamily_DNA_recomb/repair_BRCA2_hlx,superfamily_NA-bd_OB-fold,pirsf_BRCA2,pfscan_BRCA2_repeat	-	no_errors	BRCA2	HGNC	ENSG00000139618				172	0	0	80	36	31.0345
BRCA2	0	genome.wustl.edu	37	13	32929041	32929041	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	13	32929041	32929041	G	A	SNP	BRCA2	ENST00000380152	human	ensembl	74_37	+1	known	missense	c.7051	p.A2351T	0.007	pirsf_BRCA2	pfam_DNA_recomb/repair_BRCA2_hlx,pfam_BRCA2_repeat,pfam_BRCA2_OB_3,pfam_BRCA2_OB_1,pfam_Tower,superfamily_DNA_recomb/repair_BRCA2_hlx,superfamily_NA-bd_OB-fold,pirsf_BRCA2,pfscan_BRCA2_repeat	-	no_errors	BRCA2	HGNC	ENSG00000139618				164	0	0	73	34	31.7757
NBEA	0	genome.wustl.edu	37	13	35733985	35733985	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	13	35733985	35733985	C	T	SNP	NBEA	ENST00000310336	human	ensembl	74_37	+1	known	missense	c.3677	p.A1226V	0.020	NULL	pfam_BEACH_dom,pfam_DUF1088,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_ConA-like_lec_gl_sf,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom,pfscan_WD40_repeat_dom	-	no_errors	NBEA	HGNC	ENSG00000172915				26	0	0	11	4	26.6667
NBEA	0	genome.wustl.edu	37	13	35770145	35770145	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	13	35770145	35770145	T	C	SNP	NBEA	ENST00000310336	human	ensembl	74_37	+1	known	missense	c.5072	p.L1691S	0.979	NULL	pfam_BEACH_dom,pfam_DUF1088,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_ConA-like_lec_gl_sf,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom,pfscan_WD40_repeat_dom	-	no_errors	NBEA	HGNC	ENSG00000172915				97	0	0	59	6	9.23077
SMAD9	0	genome.wustl.edu	37	13	37453642	37453642	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	13	37453642	37453642	G	A	SNP	SMAD9	ENST00000379826	human	ensembl	74_37	-1	known	missense	c.185	p.P62L	1.000	pfam_MAD_homology1_Dwarfin-type,superfamily_MAD_homology_MH1,smart_MAD_homology1_Dwarfin-type,pfscan_MAD_homology_MH1	pfam_SMAD_dom_Dwarfin-type,pfam_MAD_homology1_Dwarfin-type,pfam_Interferon_reg_factor-3,superfamily_SMAD_FHA_domain,superfamily_MAD_homology_MH1,smart_MAD_homology1_Dwarfin-type,smart_SMAD_dom_Dwarfin-type,pfscan_MAD_homology_MH1,pfscan_SMAD_dom_Dwarfin-type	-	no_errors	SMAD9	HGNC	ENSG00000120693				221	0	0	106	51	32.4841
EXOSC8	0	genome.wustl.edu	37	13	37577117	37577117	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	13	37577117	37577117	T	A	SNP	EXOSC8	ENST00000389704	human	ensembl	74_37	+1	known	missense	c.165	p.N55K	0.990	pfam_ExoRNase_PH_dom1,superfamily_Ribosomal_S5_D2-typ_fold	pfam_ExoRNase_PH_dom1,pfam_ExoRNase_PH_dom2,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_ExoRNase_PH_dom2	-	no_errors	EXOSC8	HGNC	ENSG00000120699				95	0	0	46	24	34.2857
SUPT20H	0	genome.wustl.edu	37	13	37583829	37583829	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	13	37583829	37583829	G	A	SNP	SUPT20H	ENST00000350612	human	ensembl	74_37	-1	known	missense	c.2320	p.P774S	0.993	NULL	pfam_Spt20	-	no_errors	SUPT20H	HGNC	ENSG00000102710				287	1	0.347222	141	53	27.3196
FREM2	0	genome.wustl.edu	37	13	39265089	39265089	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	13	39265089	39265089	G	A	SNP	FREM2	ENST00000280481	human	ensembl	74_37	+1	known	missense	c.3608	p.G1203D	1.000	superfamily_Cadherin-like	pfam_Calx_beta,superfamily_Cadherin-like,smart_Calx_beta	-	no_errors	FREM2	HGNC	ENSG00000150893				638	0	0	400	49	10.9131
FREM2	0	genome.wustl.edu	37	13	39265723	39265723	+	Silent	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	13	39265723	39265723	C	T	SNP	FREM2	ENST00000280481	human	ensembl	74_37	+1	known	silent	c.4242	p.I1414	0.186	NULL	pfam_Calx_beta,superfamily_Cadherin-like,smart_Calx_beta	-	no_errors	FREM2	HGNC	ENSG00000150893				284	0	0	123	50	28.9017
FREM2	0	genome.wustl.edu	37	13	39425215	39425215	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	13	39425215	39425215	A	G	SNP	FREM2	ENST00000280481	human	ensembl	74_37	+1	known	missense	c.6712	p.T2238A	1.000	smart_Calx_beta	pfam_Calx_beta,superfamily_Cadherin-like,smart_Calx_beta	-	no_errors	FREM2	HGNC	ENSG00000150893				188	0	0	82	31	27.4336
KBTBD6	0	genome.wustl.edu	37	13	41705362	41705362	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	13	41705362	41705362	T	C	SNP	KBTBD6	ENST00000379485	human	ensembl	74_37	-1	known	missense	c.1286	p.D429G	0.999	pfam_Kelch_1	pfam_BTB_POZ,pfam_BACK,pfam_Kelch_1,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pfscan_BTB/POZ-like	-	no_errors	KBTBD6	HGNC	ENSG00000165572				234	0	0	177	11	5.85106
KBTBD7	0	genome.wustl.edu	37	13	41768040	41768040	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	13	41768040	41768040	G	A	SNP	KBTBD7	ENST00000379483	human	ensembl	74_37	-1	known	silent	c.354	p.D118	0.996	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	pfam_BTB_POZ,pfam_BACK,pfam_Kelch_1,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KBTBD7	HGNC	ENSG00000120696				47	0	0	36	13	26.5306
VWA8	0	genome.wustl.edu	37	13	42149902	42149902	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	13	42149902	42149902	T	C	SNP	VWA8	ENST00000379310	human	ensembl	74_37	-1	known	missense	c.5344	p.N1782D	1.000	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_ATPase_dyneun-rel_AAA,pfam_VWF_A,superfamily_P-loop_NTPase,smart_AAA+_ATPase,smart_VWF_A,pfscan_VWF_A	-	no_errors	VWA8	HGNC	ENSG00000102763				152	0	0	87	18	17.1429
ENOX1	0	genome.wustl.edu	37	13	43872523	43872523	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	13	43872523	43872523	G	A	SNP	ENOX1	ENST00000261488	human	ensembl	74_37	-1	known	nonsense	c.1405	p.Q469*	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	ENOX1	HGNC	ENSG00000120658				244	0	0	135	71	34.466
LACC1	0	genome.wustl.edu	37	13	44463069	44463069	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	13	44463069	44463069	C	T	SNP	LACC1	ENST00000325686	human	ensembl	74_37	+1	known	nonsense	c.1084	p.Q362*	0.003	pfam_Cu_polyphenol_OxRdtase_Laccase,superfamily_Cytotoxic_necrot_fac-like_cat	pfam_Cu_polyphenol_OxRdtase_Laccase,superfamily_Cytotoxic_necrot_fac-like_cat	-	no_errors	LACC1	HGNC	ENSG00000179630				284	0	0	186	16	7.92079
ZC3H13	0	genome.wustl.edu	37	13	46554101	46554101	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	13	46554101	46554101	T	C	SNP	ZC3H13	ENST00000242848	human	ensembl	74_37	-1	known	missense	c.1759	p.S587G	1.000	NULL	pfam_Znf_CCCH,smart_Znf_CCCH	-	no_errors	ZC3H13	HGNC	ENSG00000123200				165	0	0	97	9	8.49057
SUCLA2	0	genome.wustl.edu	37	13	48570976	48570976	+	Splice_Site	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	13	48570976	48570976	A	G	SNP	SUCLA2	ENST00000378654	human	ensembl	74_37	-1	known	splice_site	c.271+2	e2+2	1.000	-	-	-	no_errors	SUCLA2	HGNC	ENSG00000136143				110	0	0	53	27	33.75
RB1	0	genome.wustl.edu	37	13	48947548	48947548	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	13	48947548	48947548	A	T	SNP	RB1	ENST00000267163	human	ensembl	74_37	+1	known	missense	c.1135	p.M379L	1.000	pfam_RB_A	pfam_RB_C,pfam_RB_A,pfam_RB_B,pfam_RB_N,superfamily_Cyclin-like,smart_Cyclin-like	-	no_errors	RB1	HGNC	ENSG00000139687				140	0	0	92	29	23.9669
INTS6	0	genome.wustl.edu	37	13	52004496	52004496	+	Silent	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	13	52004496	52004496	C	T	SNP	INTS6	ENST00000311234	human	ensembl	74_37	-1	known	silent	c.363	p.E121	1.000	pfam_VWF_A,pfscan_VWF_A	pfam_VWF_A,pfscan_VWF_A	-	no_errors	INTS6	HGNC	ENSG00000102786				236	0	0	138	45	24.5902
MRPS31P5	0	genome.wustl.edu	37	13	52749871	52749871	+	RNA	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	13	52749871	52749871	T	C	SNP	MRPS31P5	ENST00000416599	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.972	-	-	-	no_errors	MRPS31P5	HGNC	ENSG00000243406				54	0	0	44	4	8.33333
LOC101930578	0	genome.wustl.edu	37	13	52854026	52854026	+	RNA	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	13	52854026	52854026	T	C	SNP	LOC101930578	ENST00000451298	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	RP11-248G5.8	Clone_based_vega_gene	ENSG00000217576				17	0	0	14	4	22.2222
SUGT1	0	genome.wustl.edu	37	13	53250418	53250418	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	13	53250418	53250418	G	A	SNP	SUGT1	ENST00000343788	human	ensembl	74_37	+1	known	silent	c.777	p.G259	0.945	superfamily_HSP20-like_chaperone	pfam_SGS,pfam_CS_dom,superfamily_HSP20-like_chaperone,smart_TPR_repeat,pfscan_CS_dom,pfscan_SGS,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	SUGT1	HGNC	ENSG00000165416				105	0	0	65	4	5.7971
PCDH8	0	genome.wustl.edu	37	13	53421057	53421057	+	Silent	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	13	53421057	53421057	C	T	SNP	PCDH8	ENST00000377942	human	ensembl	74_37	-1	known	silent	c.1515	p.S505	0.101	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH8	HGNC	ENSG00000136099				24	0	0	10	3	23.0769
PCDH8	0	genome.wustl.edu	37	13	53422041	53422041	+	Silent	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	13	53422041	53422041	C	T	SNP	PCDH8	ENST00000377942	human	ensembl	74_37	-1	known	silent	c.531	p.P177	0.010	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH8	HGNC	ENSG00000136099				18	0	0	7	4	36.3636
TDRD3	0	genome.wustl.edu	37	13	61041374	61041374	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	13	61041374	61041374	T	C	SNP	TDRD3	ENST00000535286	human	ensembl	74_37	+1	known	missense	c.356	p.L119P	1.000	NULL	pfam_DUF1767,pfam_Tudor,pfam_Survival_motor_neuron,pfam_UBA/Ts_N,superfamily_UBA-like,smart_UBA/transl_elong_EF1B_N_euk,smart_Tudor,pfscan_Tudor,pfscan_UBA/transl_elong_EF1B_N_euk	-	no_errors	TDRD3	HGNC	ENSG00000083544				202	0	0	93	35	27.3438
TDRD3	0	genome.wustl.edu	37	13	61141669	61141669	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	13	61141669	61141669	G	A	SNP	TDRD3	ENST00000535286	human	ensembl	74_37	+1	known	missense	c.2129	p.G710D	0.908	pfam_Survival_motor_neuron	pfam_DUF1767,pfam_Tudor,pfam_Survival_motor_neuron,pfam_UBA/Ts_N,superfamily_UBA-like,smart_UBA/transl_elong_EF1B_N_euk,smart_Tudor,pfscan_Tudor,pfscan_UBA/transl_elong_EF1B_N_euk	-	no_errors	TDRD3	HGNC	ENSG00000083544				132	0	0	84	6	6.66667
PCDH9	0	genome.wustl.edu	37	13	67800539	67800539	+	Silent	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	13	67800539	67800539	T	C	SNP	PCDH9	ENST00000377865	human	ensembl	74_37	-1	known	silent	c.2034	p.P678	1.000	superfamily_Cadherin-like	pfam_Cadherin,pfam_Protocadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH9	HGNC	ENSG00000184226				147	0	0	87	30	25.641
UCHL3	0	genome.wustl.edu	37	13	76179869	76179869	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	13	76179869	76179869	C	T	SNP	UCHL3	ENST00000377595	human	ensembl	74_37	+1	known	missense	c.614	p.A205V	1.000	pfam_Peptidase_C12	pfam_Peptidase_C12,prints_Peptidase_C12	-	no_errors	UCHL3	HGNC	ENSG00000118939				137	0	0	67	22	24.7191
MYCBP2	0	genome.wustl.edu	37	13	77652957	77652957	+	Splice_Site	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	13	77652957	77652957	A	G	SNP	MYCBP2	ENST00000407578	human	ensembl	74_37	-1	known	splice_site	c.11484+2	e66+2	1.000	-	-	-	no_errors	MYCBP2	HGNC	ENSG00000005810				38	0	0	28	3	9.67742
MYCBP2	0	genome.wustl.edu	37	13	77780843	77780843	+	Silent	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	13	77780843	77780843	T	C	SNP	MYCBP2	ENST00000407578	human	ensembl	74_37	-1	known	silent	c.3534	p.L1178	0.994	superfamily_ARM-type_fold	pfam_PHR,pfam_Reg_chr_condens,pfam_Filamin/ABP280_repeat-like,superfamily_RCC1/BLIP-II,superfamily_Galactose-bd-like,superfamily_Ig_E-set,superfamily_ARM-type_fold,smart_Znf_RING,pfscan_Filamin/ABP280_repeat-like,pfscan_Znf_RING,pfscan_Reg_chr_condens,prints_Reg_chr_condens	-	no_errors	MYCBP2	HGNC	ENSG00000005810				118	0	0	42	17	28.8136
SLITRK5	0	genome.wustl.edu	37	13	88327790	88327790	+	Silent	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	13	88327790	88327790	C	T	SNP	SLITRK5	ENST00000325089	human	ensembl	74_37	+1	known	silent	c.147	p.D49	1.000	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	SLITRK5	HGNC	ENSG00000165300				241	0	0	122	55	31.0734
ABCC4	0	genome.wustl.edu	37	13	95886989	95886989	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	13	95886989	95886989	C	T	SNP	ABCC4	ENST00000376887	human	ensembl	74_37	-1	known	missense	c.406	p.A136T	0.000	pfam_ABC_transptr_TM_dom,superfamily_ABC1_TM_dom,pfscan_ABC1_TM_dom	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC1_TM_dom,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom,prints_CysFib_conduc_TM	-	no_errors	ABCC4	HGNC	ENSG00000125257				59	0	0	23	12	34.2857
MBNL2	0	genome.wustl.edu	37	13	97995277	97995277	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	13	97995277	97995277	T	C	SNP	MBNL2	ENST00000376673	human	ensembl	74_37	+1	known	missense	c.347	p.F116S	1.000	NULL	pfam_Znf_CCCH,smart_Znf_CCCH	-	no_errors	MBNL2	HGNC	ENSG00000139793				108	0	0	45	34	43.038
IPO5	0	genome.wustl.edu	37	13	98658469	98658469	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	13	98658469	98658469	T	A	SNP	IPO5	ENST00000261574	human	ensembl	74_37	+1	known	missense	c.1637	p.V546D	1.000	superfamily_ARM-type_fold	pfam_HEAT,superfamily_ARM-type_fold,pfscan_Importin-beta_N	-	no_errors	IPO5	HGNC	ENSG00000065150				335	0	0	210	27	11.3924
GPR183	0	genome.wustl.edu	37	13	99947711	99947711	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	13	99947711	99947711	T	C	SNP	GPR183	ENST00000376414	human	ensembl	74_37	-1	known	missense	c.689	p.N230S	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	-	no_errors	GPR183	HGNC	ENSG00000169508				235	0	0	152	19	11.1111
EVL	0	genome.wustl.edu	37	14	100604082	100604082	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	14	100604082	100604082	C	T	SNP	EVL	ENST00000392920	human	ensembl	74_37	+1	known	missense	c.1037	p.P346L	1.000	pirsf_Vasodilator_phosphoprotein	pfam_WH1/EVH1,pfam_VASP_tetra,smart_WH1/EVH1,pirsf_Vasodilator_phosphoprotein,pfscan_WH1/EVH1	-	no_errors	EVL	HGNC	ENSG00000196405				197	0	0	86	39	31.2
MIR487B	0	genome.wustl.edu	37	14	101512793	101512793	+	RNA	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	14	101512793	101512793	T	C	SNP	MIR487B	ENST00000385021	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	MIR487B	HGNC	ENSG00000207754				154	0	0	103	6	5.50459
ZNF839	0	genome.wustl.edu	37	14	102805235	102805235	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	14	102805235	102805235	G	A	SNP	ZNF839	ENST00000442396	human	ensembl	74_37	+1	known	missense	c.1742	p.R581Q	0.000	NULL	pfscan_Znf_C2H2	-	no_errors	ZNF839	HGNC	ENSG00000022976				84	0	0	50	11	18.0328
KLC1	0	genome.wustl.edu	37	14	104121164	104121164	+	Splice_Site	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	14	104121164	104121164	T	C	SNP	KLC1	ENST00000334553	human	ensembl	74_37	+1	known	splice_site	c.261+2	e1+2	1.000	-	-	-	no_errors	KLC1	HGNC	ENSG00000126214				122	0	0	45	28	38.3562
TDRD9	0	genome.wustl.edu	37	14	104460920	104460920	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	14	104460920	104460920	C	T	SNP	TDRD9	ENST00000409874	human	ensembl	74_37	+1	known	missense	c.1300	p.P434S	1.000	pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_C,pfscan_Helicase_C	pfam_Helicase-assoc_dom,pfam_Tudor,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,smart_Tudor,pfscan_Tudor,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	TDRD9	HGNC	ENSG00000156414				50	0	0	26	13	33.3333
ADSSL1	0	genome.wustl.edu	37	14	105208219	105208219	+	Silent	SNP	C	C	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	14	105208219	105208219	C	A	SNP	ADSSL1	ENST00000332972	human	ensembl	74_37	+1	known	silent	c.957	p.T319	0.018	pfam_Adenylosuccinate_synthetase,superfamily_P-loop_NTPase,smart_Adenylosuccinate_synthetase,tigrfam_Adenylosuccinate_synthetase	pfam_Adenylosuccinate_synthetase,superfamily_P-loop_NTPase,smart_Adenylosuccinate_synthetase,tigrfam_Adenylosuccinate_synthetase	-	no_errors	ADSSL1	HGNC	ENSG00000185100				262	0	0	152	58	27.619
AHNAK2	0	genome.wustl.edu	37	14	105409919	105409919	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	14	105409919	105409919	C	T	SNP	AHNAK2	ENST00000333244	human	ensembl	74_37	-1	known	missense	c.11869	p.A3957T	0.045	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK2	HGNC	ENSG00000185567				585	0	0	403	30	6.92841
AHNAK2	0	genome.wustl.edu	37	14	105411037	105411037	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	14	105411037	105411037	T	C	SNP	AHNAK2	ENST00000333244	human	ensembl	74_37	-1	known	missense	c.10751	p.D3584G	0.830	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK2	HGNC	ENSG00000185567				359	1	0.277778	158	57	26.5116
AHNAK2	0	genome.wustl.edu	37	14	105413365	105413365	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	14	105413365	105413365	G	A	SNP	AHNAK2	ENST00000333244	human	ensembl	74_37	-1	known	missense	c.8423	p.A2808V	0.001	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK2	HGNC	ENSG00000185567				615	0	0	437	44	9.14761
AHNAK2	0	genome.wustl.edu	37	14	105419601	105419601	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	14	105419601	105419601	G	A	SNP	AHNAK2	ENST00000333244	human	ensembl	74_37	-1	known	silent	c.2187	p.S729	0.000	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK2	HGNC	ENSG00000185567				331	1	0.301205	150	82	35.3448
CDCA4	0	genome.wustl.edu	37	14	105477960	105477960	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	14	105477960	105477960	G	A	SNP	CDCA4	ENST00000336219	human	ensembl	74_37	-1	known	missense	c.307	p.R103C	1.000	NULL	pfam_SERTA,pfscan_SERTA	-	no_errors	CDCA4	HGNC	ENSG00000170779				81	0	0	34	23	40.3509
MTA1	0	genome.wustl.edu	37	14	105936442	105936442	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	14	105936442	105936442	G	A	SNP	MTA1	ENST00000331320	human	ensembl	74_37	+1	known	missense	c.2038	p.A680T	0.997	NULL	pfam_BAH_dom,pfam_ELM2_dom,pfam_Znf_GATA,superfamily_Homeodomain-like,smart_BAH_dom,smart_SANT/Myb,smart_Znf_GATA,pfscan_BAH_dom,pfscan_ELM2_dom	-	no_errors	MTA1	HGNC	ENSG00000182979				96	0	0	34	12	26.087
OR4K1	0	genome.wustl.edu	37	14	20403942	20403942	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	14	20403942	20403942	G	A	SNP	OR4K1	ENST00000285600	human	ensembl	74_37	+1	known	silent	c.117	p.V39	0.000	pfam_7TM_GPCR_olfarory/Srsx,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4K1	HGNC	ENSG00000155249				442	1	0.225734	251	116	31.6076
CCNB1IP1	0	genome.wustl.edu	37	14	20784646	20784646	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	14	20784646	20784646	G	A	SNP	CCNB1IP1	ENST00000353689	human	ensembl	74_37	-1	known	nonsense	c.37	p.R13*	1.000	NULL	NULL	-	no_errors	CCNB1IP1	HGNC	ENSG00000100814				101	0	0	48	27	36
TEP1	0	genome.wustl.edu	37	14	20840980	20840980	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	14	20840980	20840980	C	T	SNP	TEP1	ENST00000262715	human	ensembl	74_37	-1	known	missense	c.6988	p.A2330T	0.012	superfamily_WD40_repeat_dom,smart_WD40_repeat	pfam_TROVE,pfam_TEP1_N,pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_P-loop_NTPase,smart_WD40_repeat,pfscan_NACHT_NTPase,pfscan_TROVE,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	TEP1	HGNC	ENSG00000129566				178	1	0.558659	85	36	29.7521
OSGEP	0	genome.wustl.edu	37	14	20917404	20917404	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	14	20917404	20917404	G	A	SNP	OSGEP	ENST00000206542	human	ensembl	74_37	-1	known	missense	c.433	p.R145C	1.000	pfam_Gcp-like_dom,tigrfam_KAE1/YgjD	pfam_Gcp-like_dom,prints_KAE1/YgjD,tigrfam_KAE1/YgjD	-	no_errors	OSGEP	HGNC	ENSG00000092094				93	0	0	43	15	25.8621
LOC101929718	0	genome.wustl.edu	37	14	21465126	21465126	+	RNA	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	14	21465126	21465126	T	C	SNP	LOC101929718	ENST00000557335	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.016	-	-	-	no_errors	RP11-84C10.4	Clone_based_vega_gene	ENSG00000258471				41	0	0	22	4	15.3846
ARHGEF40	0	genome.wustl.edu	37	14	21549794	21549794	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	14	21549794	21549794	C	T	SNP	ARHGEF40	ENST00000298694	human	ensembl	74_37	+1	known	missense	c.2767	p.R923W	1.000	NULL	pfam_DH-domain,superfamily_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	ARHGEF40	HGNC	ENSG00000165801				48	0	0	21	12	36.3636
TOX4	0	genome.wustl.edu	37	14	21961331	21961331	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	14	21961331	21961331	C	A	SNP	TOX4	ENST00000262709	human	ensembl	74_37	+1	known	missense	c.1556	p.P519H	1.000	NULL	pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	-	no_errors	TOX4	HGNC	ENSG00000092203				154	0	0	114	12	9.52381
OR4E2	0	genome.wustl.edu	37	14	22134094	22134094	+	Silent	SNP	C	C	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	14	22134094	22134094	C	A	SNP	OR4E2	ENST00000408935	human	ensembl	74_37	+1	known	silent	c.798	p.S266	0.044	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4E2	HGNC	ENSG00000221977				114	1	0.869565	56	24	30
BCL2L2	0	genome.wustl.edu	37	14	23777114	23777114	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	14	23777114	23777114	G	A	SNP	BCL2L2	ENST00000250405	human	ensembl	74_37	+1	known	missense	c.138	p.M46I	1.000	pfam_Blc2_fam,pfscan_Bcl2-like,prints_Apop_reg_BclW	pfam_Blc2_fam,pfam_Bcl2_BH4,smart_Bcl2_BH4,pfscan_Bcl2-like,pfscan_Bcl2_BH4,prints_Apop_reg_BclW,prints_Blc2_fam	-	no_errors	BCL2L2	HGNC	ENSG00000129473				174	0	0	82	47	36.4341
EFS	0	genome.wustl.edu	37	14	23829242	23829242	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	14	23829242	23829242	C	T	SNP	EFS	ENST00000216733	human	ensembl	74_37	-1	known	missense	c.445	p.D149N	0.998	NULL	pfam_CAS_DUF3513,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain,prints_SH3_domain	-	no_errors	EFS	HGNC	ENSG00000100842				148	0	0	87	37	29.8387
LRRC16B	0	genome.wustl.edu	37	14	24531766	24531766	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	14	24531766	24531766	A	G	SNP	LRRC16B	ENST00000342740	human	ensembl	74_37	+1	known	missense	c.2558	p.H853R	1.000	NULL	smart_Leu-rich_rpt_RNase_inh_sub-typ	-	no_errors	LRRC16B	HGNC	ENSG00000186648				261	0	0	136	67	33.0049
PCK2	0	genome.wustl.edu	37	14	24569353	24569353	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	14	24569353	24569353	G	A	SNP	PCK2	ENST00000216780	human	ensembl	74_37	+1	known	missense	c.1165	p.E389K	1.000	pfam_PEP_carboxykinase_GTP,pirsf_PEP_carboxykinase_GTP	pfam_PEP_carboxykinase_GTP,superfamily_PEP_carboxykinase_N,pirsf_PEP_carboxykinase_GTP	-	no_errors	PCK2	HGNC	ENSG00000100889				99	0	0	67	8	10.6667
DCAF11	0	genome.wustl.edu	37	14	24587991	24587991	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	14	24587991	24587991	A	G	SNP	DCAF11	ENST00000446197	human	ensembl	74_37	+1	known	missense	c.757	p.T253A	1.000	superfamily_WD40_repeat_dom,smart_WD40_repeat,pirsf_WD_repeat_p23,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pirsf_WD_repeat_p23,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	DCAF11	HGNC	ENSG00000100897				294	0	0	142	59	29.3532
DCAF11	0	genome.wustl.edu	37	14	24590142	24590142	+	Silent	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	14	24590142	24590142	A	G	SNP	DCAF11	ENST00000446197	human	ensembl	74_37	+1	known	silent	c.1188	p.S396	0.984	superfamily_WD40_repeat_dom,pirsf_WD_repeat_p23,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pirsf_WD_repeat_p23,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	DCAF11	HGNC	ENSG00000100897				143	0	0	107	7	6.14035
SDR39U1	0	genome.wustl.edu	37	14	24910013	24910013	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	14	24910013	24910013	T	C	SNP	SDR39U1	ENST00000399395	human	ensembl	74_37	-1	known	missense	c.448	p.T150A	1.000	pfam_Epimerase_deHydtase,tigrfam_Sugar_nucleotide_Epase_put	pfam_DUF1731_C,pfam_Epimerase_deHydtase,tigrfam_Sugar_nucleotide_Epase_put	-	no_errors	SDR39U1	HGNC	ENSG00000100445				170	0	0	119	14	10.5263
CTSG	0	genome.wustl.edu	37	14	25044010	25044010	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	14	25044010	25044010	T	C	SNP	CTSG	ENST00000216336	human	ensembl	74_37	-1	known	missense	c.210	p.I70M	0.000	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	CTSG	HGNC	ENSG00000100448				156	0	0	118	9	7.08661
STXBP6	0	genome.wustl.edu	37	14	25288385	25288385	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	14	25288385	25288385	T	C	SNP	STXBP6	ENST00000323944	human	ensembl	74_37	-1	known	missense	c.467	p.H156R	1.000	pfscan_Synaptobrevin	pfam_Synaptobrevin,pfscan_Synaptobrevin	-	no_errors	STXBP6	HGNC	ENSG00000168952				259	0	0	181	14	7.17949
FOXG1	0	genome.wustl.edu	37	14	29237197	29237197	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	14	29237197	29237197	T	A	SNP	FOXG1	ENST00000313071	human	ensembl	74_37	+1	known	missense	c.712	p.C238S	1.000	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXG1	HGNC	ENSG00000176165				84	0	0	41	18	30.5085
FSCB	0	genome.wustl.edu	37	14	44976167	44976167	+	Silent	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	14	44976167	44976167	A	G	SNP	FSCB	ENST00000340446	human	ensembl	74_37	-1	known	silent	c.24	p.T8	0.963	NULL	NULL	-	no_errors	FSCB	HGNC	ENSG00000189139				410	0	0	244	42	14.6853
FKBP3	0	genome.wustl.edu	37	14	45587241	45587241	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	14	45587241	45587241	G	A	SNP	FKBP3	ENST00000216330	human	ensembl	74_37	-1	known	missense	c.610	p.P204S	1.000	pfam_PPIase_FKBP_dom,pfscan_PPIase_FKBP_dom	pfam_PPIase_FKBP_dom,pfscan_PPIase_FKBP_dom	-	no_errors	FKBP3	HGNC	ENSG00000100442				305	0	0	167	69	29.2373
FKBP3	0	genome.wustl.edu	37	14	45599093	45599093	+	Silent	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	14	45599093	45599093	A	G	SNP	FKBP3	ENST00000216330	human	ensembl	74_37	-1	known	silent	c.222	p.G74	0.981	NULL	pfam_PPIase_FKBP_dom,pfscan_PPIase_FKBP_dom	-	no_errors	FKBP3	HGNC	ENSG00000100442				56	0	0	25	10	28.5714
MIS18BP1	0	genome.wustl.edu	37	14	45700487	45700487	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	14	45700487	45700487	T	C	SNP	MIS18BP1	ENST00000310806	human	ensembl	74_37	-1	known	missense	c.1451	p.N484S	0.844	NULL	pfam_SANTA,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	MIS18BP1	HGNC	ENSG00000129534				106	0	0	38	23	37.7049
RPL10L	0	genome.wustl.edu	37	14	47120567	47120567	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	14	47120567	47120567	T	C	SNP	RPL10L	ENST00000298283	human	ensembl	74_37	-1	known	missense	c.373	p.T125A	0.839	pfam_Ribosomal_L10e/L16,superfamily_Ribosomal_L10e/L16,pirsf_Ribosomal_L10e,tigrfam_Ribosomal_L10e	pfam_Ribosomal_L10e/L16,superfamily_Ribosomal_L10e/L16,pirsf_Ribosomal_L10e,tigrfam_Ribosomal_L10e	-	no_errors	RPL10L	HGNC	ENSG00000165496				149	0	0	71	4	5.33333
RPL10L	0	genome.wustl.edu	37	14	47120671	47120671	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	14	47120671	47120671	C	T	SNP	RPL10L	ENST00000298283	human	ensembl	74_37	-1	known	missense	c.269	p.R90Q	1.000	pfam_Ribosomal_L10e/L16,superfamily_Ribosomal_L10e/L16,pirsf_Ribosomal_L10e,tigrfam_Ribosomal_L10e	pfam_Ribosomal_L10e/L16,superfamily_Ribosomal_L10e/L16,pirsf_Ribosomal_L10e,tigrfam_Ribosomal_L10e	-	no_errors	RPL10L	HGNC	ENSG00000165496				118	0	0	54	37	40.6593
ABHD12B	0	genome.wustl.edu	37	14	51347272	51347272	+	Silent	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	14	51347272	51347272	T	C	SNP	ABHD12B	ENST00000337334	human	ensembl	74_37	+1	known	silent	c.438	p.H146	0.985	NULL	pfam_AB_hydrolase_1,pfam_Peptidase_S9,pfam_X-Pro-like_dom	-	no_errors	ABHD12B	HGNC	ENSG00000131969				300	0	0	134	80	37.3832
TRIM9	0	genome.wustl.edu	37	14	51561624	51561624	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	14	51561624	51561624	C	T	SNP	TRIM9	ENST00000338969	human	ensembl	74_37	-1	known	missense	c.34	p.V12M	1.000	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	pfam_SPRY_rcpt,pfam_Fibronectin_type3,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,superfamily_Znf_FYVE_PHD,smart_Znf_RING,smart_Znf_B-box,smart_Bbox_C,smart_Fibronectin_type3,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Fibronectin_type3,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM9	HGNC	ENSG00000100505				31	0	0	19	6	24
FRMD6	0	genome.wustl.edu	37	14	52174925	52174925	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	14	52174925	52174925	G	A	SNP	FRMD6	ENST00000344768	human	ensembl	74_37	+1	known	missense	c.688	p.A230T	0.986	pfam_FERM_central,smart_Band_41_domain,pfscan_FERM_domain	pfam_FERM_central,pfam_FERM_PH-like_C,pfam_FERM_N,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain	-	no_errors	FRMD6	HGNC	ENSG00000139926				63	0	0	35	14	28.5714
PTGER2	0	genome.wustl.edu	37	14	52781392	52781392	+	Silent	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	14	52781392	52781392	A	G	SNP	PTGER2	ENST00000245457	human	ensembl	74_37	+1	known	silent	c.126	p.A42	0.997	pfscan_GPCR_Rhodpsn_7TM,prints_Prostanoid_rcpt,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_Prostglndn_EP2_rcpt,prints_Prostanoid_rcpt,prints_GPCR_Rhodpsn	-	no_errors	PTGER2	HGNC	ENSG00000125384				87	0	0	36	10	21.7391
GPR137C	0	genome.wustl.edu	37	14	53020116	53020116	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	14	53020116	53020116	T	A	SNP	GPR137C	ENST00000321662	human	ensembl	74_37	+1	known	missense	c.251	p.L84H	1.000	NULL	NULL	-	no_errors	GPR137C	HGNC	ENSG00000180998				47	0	0	21	18	46.1538
FERMT2	0	genome.wustl.edu	37	14	53417283	53417283	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	14	53417283	53417283	C	T	SNP	FERMT2	ENST00000343279	human	ensembl	74_37	-1	known	missense	c.4	p.A2T	1.000	NULL	pfam_FERM_central,pfam_Pleckstrin_homology,pfam_FERM_N,superfamily_FERM_central,smart_Band_41_domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	FERMT2	HGNC	ENSG00000073712				255	0	0	126	68	35.0515
EXOC5	0	genome.wustl.edu	37	14	57676479	57676479	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	14	57676479	57676479	A	T	SNP	EXOC5	ENST00000413566	human	ensembl	74_37	-1	known	missense	c.1744	p.Y582N	1.000	pfam_Sec10-like	pfam_Sec10-like	-	no_errors	EXOC5	HGNC	ENSG00000070367				26	0	0	11	4	26.6667
DACT1	0	genome.wustl.edu	37	14	59113577	59113577	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	14	59113577	59113577	C	T	SNP	DACT1	ENST00000335867	human	ensembl	74_37	+1	known	nonsense	c.2236	p.Q746*	0.780	NULL	NULL	-	no_errors	DACT1	HGNC	ENSG00000165617				225	0	0	90	31	25.6198
DAAM1	0	genome.wustl.edu	37	14	59791105	59791105	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	14	59791105	59791105	T	A	SNP	DAAM1	ENST00000351081	human	ensembl	74_37	+1	known	missense	c.922	p.F308I	1.000	pfam_FH3_dom,superfamily_ARM-type_fold	pfam_FH2_Formin,pfam_FH3_dom,pfam_GTPase-bd,superfamily_ARM-type_fold,superfamily_tRNA-bd_arm,smart_FH2_Formin	-	no_errors	DAAM1	HGNC	ENSG00000100592				121	0	0	75	15	16.6667
DAAM1	0	genome.wustl.edu	37	14	59835393	59835393	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	14	59835393	59835393	G	A	SNP	DAAM1	ENST00000351081	human	ensembl	74_37	+1	known	missense	c.3053	p.R1018H	1.000	smart_FH2_Formin	pfam_FH2_Formin,pfam_FH3_dom,pfam_GTPase-bd,superfamily_ARM-type_fold,superfamily_tRNA-bd_arm,smart_FH2_Formin	-	no_errors	DAAM1	HGNC	ENSG00000100592				84	0	0	30	15	33.3333
PPM1A	0	genome.wustl.edu	37	14	60756548	60756548	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	14	60756548	60756548	G	A	SNP	PPM1A	ENST00000325642	human	ensembl	74_37	+1	known	missense	c.1196	p.G399D	1.000	pfam_PP2C_C,superfamily_PP2C_C	pfam_PP2C-like_dom,pfam_PP2C_C,superfamily_PP2C-like_dom,superfamily_PP2C_C,smart_PP2C-like_dom	-	no_errors	PPM1A	HGNC	ENSG00000100614				55	0	0	40	4	9.09091
SIX6	0	genome.wustl.edu	37	14	60977805	60977805	+	Silent	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	14	60977805	60977805	C	T	SNP	SIX6	ENST00000327720	human	ensembl	74_37	+1	known	silent	c.576	p.L192	0.996	superfamily_Homeodomain-like	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	-	no_errors	SIX6	HGNC	ENSG00000184302				53	0	0	30	12	28.5714
PRKCH	0	genome.wustl.edu	37	14	62014542	62014542	+	Nonsense_Mutation	SNP	A	A	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	14	62014542	62014542	A	T	SNP	PRKCH	ENST00000332981	human	ensembl	74_37	+1	known	nonsense	c.1843	p.K615*	1.000	superfamily_Kinase-like_dom,smart_AGC-kinase_C,pirsf_Prot_kin_PKC_delta	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pkinase_C,pfam_C2_dom,superfamily_Kinase-like_dom,superfamily_C2_dom,smart_C2_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Prot_kin_PKC_delta,pfscan_C2_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_dom,prints_DAG/PE-bd	-	no_errors	PRKCH	HGNC	ENSG00000027075				522	1	0.191205	260	106	28.9617
SYNE2	0	genome.wustl.edu	37	14	64637149	64637149	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	14	64637149	64637149	A	G	SNP	SYNE2	ENST00000358025	human	ensembl	74_37	+1	known	missense	c.17204	p.Y5735C	0.000	NULL	pfam_CH-domain,pfam_KASH,pfam_Spectrin_repeat,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE2	HGNC	ENSG00000054654				42	0	0	23	9	28.125
PLEKHG3	0	genome.wustl.edu	37	14	65205539	65205539	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	14	65205539	65205539	G	A	SNP	PLEKHG3	ENST00000394691	human	ensembl	74_37	+1	known	missense	c.1484	p.R495H	1.000	NULL	pfam_DH-domain,pfam_Pleckstrin_homology,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PLEKHG3	HGNC	ENSG00000126822				14	0	0	5	2	28.5714
SPTB	0	genome.wustl.edu	37	14	65260187	65260187	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	14	65260187	65260187	C	T	SNP	SPTB	ENST00000389722	human	ensembl	74_37	-1	known	missense	c.2194	p.A732T	1.000	pirsf_Spectrin_bsu,pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pirsf_Spectrin_bsu,pfam_Spectrin_repeat,pfam_CH-domain,pfam_CAMSAP_CH,pfam_Pleckstrin_homology,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Pleckstrin_homology,prints_PH_dom-spectrin-type,pfscan_CH-domain,pfscan_Pleckstrin_homology	-	no_errors	SPTB	HGNC	ENSG00000070182				91	0	0	48	7	12.7273
VTI1B	0	genome.wustl.edu	37	14	68129195	68129195	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	14	68129195	68129195	G	A	SNP	VTI1B	ENST00000554659	human	ensembl	74_37	-1	known	missense	c.173	p.T58M	1.000	pfam_Vesicle_trsprt_v-SNARE_N,superfamily_t-SNARE	pfam_Vesicle_trsprt_v-SNARE_N,superfamily_t-SNARE,smart_T_SNARE_dom	-	no_errors	VTI1B	HGNC	ENSG00000100568				60	0	0	45	11	19.6429
ZFYVE26	0	genome.wustl.edu	37	14	68270908	68270908	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	14	68270908	68270908	G	T	SNP	ZFYVE26	ENST00000347230	human	ensembl	74_37	-1	known	missense	c.1345	p.H449N	1.000	NULL	pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,smart_Znf_FYVE,pfscan_Znf_FYVE-rel	-	no_errors	ZFYVE26	HGNC	ENSG00000072121				143	0	0	67	30	30.9278
ACTN1	0	genome.wustl.edu	37	14	69341810	69341810	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	14	69341810	69341810	G	A	SNP	ACTN1	ENST00000538545	human	ensembl	74_37	-1	novel	silent	c.2559	p.G853	0.000	NULL	pfam_Spectrin_repeat,pfam_CH-domain,pfam_EF-hand_Ca_insen,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_EF_hand_dom,pfscan_CH-domain,pfscan_EF_hand_dom	-	no_errors	ACTN1	HGNC	ENSG00000072110				30	0	0	2	5	71.4286
ACTN1	0	genome.wustl.edu	37	14	69371427	69371427	+	Silent	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	14	69371427	69371427	C	T	SNP	ACTN1	ENST00000394419	human	ensembl	74_37	-1	known	silent	c.621	p.T207	0.012	pfam_CH-domain,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	pfam_Spectrin_repeat,pfam_CH-domain,pfam_EF-hand_Ca_insen,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_EF_hand_dom,pfscan_CH-domain,pfscan_EF_hand_dom	-	no_errors	ACTN1	HGNC	ENSG00000072110				111	0	0	80	33	29.2035
SLC39A9	0	genome.wustl.edu	37	14	69925109	69925109	+	Silent	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	14	69925109	69925109	C	T	SNP	SLC39A9	ENST00000555840	human	ensembl	74_37	+1	known	silent	c.723	p.N241	1.000	pfam_ZIP	pfam_ZIP	-	no_errors	SLC39A9	HGNC	ENSG00000029364				367	0	0	185	88	32.2344
ADAM21	0	genome.wustl.edu	37	14	70924361	70924361	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	14	70924361	70924361	A	G	SNP	ADAM21	ENST00000267499	human	ensembl	74_37	+1	known	missense	c.145	p.I49V	0.012	pfam_Peptidase_M12B_N	pfam_Peptidase_M12B,pfam_ADAM_Cys-rich,pfam_Peptidase_M12B_N,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_Peptidase_M12B,prints_Blood-coag_inhib_Disintegrin	-	no_errors	ADAM21	HGNC	ENSG00000139985				272	0	0	175	23	11.6162
ADAM20	0	genome.wustl.edu	37	14	70990174	70990174	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	14	70990174	70990174	C	T	SNP	ADAM20	ENST00000256389	human	ensembl	74_37	-1	known	missense	c.1451	p.C484Y	1.000	pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,pfscan_Blood-coag_inhib_Disintegrin	pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_ADAM_Cys-rich,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_Peptidase_M12B,prints_Blood-coag_inhib_Disintegrin	-	no_errors	ADAM20	HGNC	ENSG00000134007				273	0	0	176	13	6.87831
DCAF4	0	genome.wustl.edu	37	14	73420907	73420907	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	14	73420907	73420907	A	T	SNP	DCAF4	ENST00000358377	human	ensembl	74_37	+1	known	missense	c.844	p.I282F	1.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DCAF4	HGNC	ENSG00000119599				735	0	0	320	41	11.3573
TTLL5	0	genome.wustl.edu	37	14	76330197	76330197	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	14	76330197	76330197	C	T	SNP	TTLL5	ENST00000298832	human	ensembl	74_37	+1	known	missense	c.3514	p.R1172W	0.991	NULL	pfam_TTL/TTLL_fam	-	no_errors	TTLL5	HGNC	ENSG00000119685				177	0	0	63	24	27.5862
GPATCH2L	0	genome.wustl.edu	37	14	76620992	76620992	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	14	76620992	76620992	C	T	SNP	GPATCH2L	ENST00000261530	human	ensembl	74_37	+1	known	nonsense	c.286	p.R96*	1.000	NULL	NULL	-	no_errors	GPATCH2L	HGNC	ENSG00000089916				169	0	0	81	37	31.3559
KIAA1737	0	genome.wustl.edu	37	14	77580348	77580348	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	14	77580348	77580348	C	T	SNP	KIAA1737	ENST00000361786	human	ensembl	74_37	+1	known	missense	c.887	p.A296V	0.004	NULL	NULL	-	no_errors	KIAA1737	HGNC	ENSG00000198894				181	0	0	83	30	26.5487
TMED8	0	genome.wustl.edu	37	14	77818084	77818084	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	14	77818084	77818084	A	T	SNP	TMED8	ENST00000216468	human	ensembl	74_37	-1	known	missense	c.129	p.D43E	1.000	NULL	superfamily_GOLD,pfscan_GOLD	-	no_errors	TMED8	HGNC	ENSG00000100580				198	0	0	86	39	31.2
AHSA1	0	genome.wustl.edu	37	14	77932002	77932002	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	14	77932002	77932002	A	G	SNP	AHSA1	ENST00000216479	human	ensembl	74_37	+1	known	missense	c.682	p.T228A	1.000	pfam_Activator_of_Hsp90_ATPase	pfam_AHSA1_N,pfam_Activator_of_Hsp90_ATPase,superfamily_AHSA1_N	-	no_errors	AHSA1	HGNC	ENSG00000100591				113	0	0	62	23	27.0588
ISM2	0	genome.wustl.edu	37	14	77948915	77948915	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	14	77948915	77948915	C	T	SNP	ISM2	ENST00000342219	human	ensembl	74_37	-1	known	nonsense	c.723	p.W241*	1.000	NULL	pfam_AMOP,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,smart_AMOP,pfscan_AMOP,pfscan_Thrombospondin_1_rpt	-	no_errors	ISM2	HGNC	ENSG00000100593				281	0	0	217	28	11.4286
NRXN3	0	genome.wustl.edu	37	14	79117646	79117646	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	14	79117646	79117646	A	G	SNP	NRXN3	ENST00000554738	human	ensembl	74_37	+1	known	missense	c.1192	p.N398D	1.000	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	NRXN3	HGNC	ENSG00000021645				176	0	0	77	55	41.6667
PTPN21	0	genome.wustl.edu	37	14	88946101	88946101	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	14	88946101	88946101	C	T	SNP	PTPN21	ENST00000328736	human	ensembl	74_37	-1	known	missense	c.1674	p.M558I	1.000	pirsf_Tyr_Pase_non-rcpt_typ-14/21	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_FERM_central,pfam_FERM_N,pfam_FERM_PH-like_C,superfamily_FERM_central,smart_Band_41_domain,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pirsf_Tyr_Pase_non-rcpt_typ-14/21,pfscan_FERM_domain,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt,prints_Band_41_fam	-	no_errors	PTPN21	HGNC	ENSG00000070778				75	0	0	27	12	30.7692
EML5	0	genome.wustl.edu	37	14	89124530	89124530	+	Splice_Site	SNP	C	C	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	14	89124530	89124530	C	G	SNP	EML5	ENST00000554922	human	ensembl	74_37	-1	known	splice_site	c.3877+1	e26+1	1.000	-	-	-	no_errors	EML5	HGNC	ENSG00000165521				91	0	0	37	14	27.451
EML5	0	genome.wustl.edu	37	14	89163261	89163261	+	Silent	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	14	89163261	89163261	T	C	SNP	EML5	ENST00000554922	human	ensembl	74_37	-1	known	silent	c.2274	p.T758	1.000	superfamily_WD40_repeat_dom,pfscan_WD40_repeat_dom	pfam_WD40_repeat,pfam_HELP,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	EML5	HGNC	ENSG00000165521				50	0	0	39	6	13.3333
NRDE2	0	genome.wustl.edu	37	14	90754804	90754804	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	14	90754804	90754804	T	G	SNP	NRDE2	ENST00000354366	human	ensembl	74_37	-1	known	missense	c.2915	p.H972P	1.000	NULL	pfam_NRDE-2	-	no_errors	NRDE2	HGNC	ENSG00000119720				172	0	0	92	42	31.3433
C14orf159	0	genome.wustl.edu	37	14	91691156	91691156	+	Silent	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	14	91691156	91691156	C	T	SNP	C14orf159	ENST00000256324	human	ensembl	74_37	+1	known	silent	c.1845	p.D615	0.000	pirsf_UPF0317_mt	pfam_DUF1445,pirsf_UPF0317_mt	-	no_errors	C14orf159	HGNC	ENSG00000133943				48	0	0	27	15	35.7143
GPR68	0	genome.wustl.edu	37	14	91701203	91701203	+	Silent	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	14	91701203	91701203	C	T	SNP	GPR68	ENST00000238699	human	ensembl	74_37	-1	known	silent	c.222	p.T74	0.005	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_OGR1_rcpt,prints_GPCR_Rhodpsn,prints_Psych_rcpt	-	no_errors	GPR68	HGNC	ENSG00000119714				66	0	0	24	15	38.4615
CCDC88C	0	genome.wustl.edu	37	14	91804474	91804474	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	14	91804474	91804474	G	A	SNP	CCDC88C	ENST00000389857	human	ensembl	74_37	-1	known	missense	c.925	p.R309C	0.994	pfam_Hook-related_fam	pfam_Hook-related_fam,superfamily_Prefoldin,superfamily_Fum_Rdtase/Succ_DH_flav-like_C	-	no_errors	CCDC88C	HGNC	ENSG00000015133				62	0	0	37	20	35.0877
BTBD7	0	genome.wustl.edu	37	14	93760464	93760464	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	14	93760464	93760464	T	C	SNP	BTBD7	ENST00000334746	human	ensembl	74_37	-1	known	missense	c.902	p.E301G	1.000	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like	pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,pfscan_BTB/POZ-like	-	no_errors	BTBD7	HGNC	ENSG00000011114				87	0	0	37	28	43.0769
SERPINA1	0	genome.wustl.edu	37	14	94844961	94844961	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	14	94844961	94844961	A	G	SNP	SERPINA1	ENST00000355814	human	ensembl	74_37	-1	known	missense	c.1082	p.V361A	0.992	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	-	no_errors	SERPINA1	HGNC	ENSG00000197249				72	0	0	38	3	7.31707
SYNE3	0	genome.wustl.edu	37	14	95921914	95921914	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	14	95921914	95921914	G	A	SNP	SYNE3	ENST00000334258	human	ensembl	74_37	-1	known	missense	c.937	p.R313C	0.434	smart_Spectrin/alpha-actinin	pfam_KASH,pfam_Spectrin_repeat,superfamily_Retrov_capsid_C,smart_Spectrin/alpha-actinin,pfscan_KASH	-	no_errors	SYNE3	HGNC	ENSG00000176438				297	0	0	232	31	11.7871
ATG2B	0	genome.wustl.edu	37	14	96808017	96808017	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	14	96808017	96808017	G	A	SNP	ATG2B	ENST00000359933	human	ensembl	74_37	-1	known	missense	c.766	p.P256S	1.000	NULL	pfam_Autophagy-rel_C	-	no_errors	ATG2B	HGNC	ENSG00000066739				126	0	0	87	7	7.44681
LRRK1	0	genome.wustl.edu	37	15	101528908	101528908	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	15	101528908	101528908	T	C	SNP	LRRK1	ENST00000388948	human	ensembl	74_37	+1	known	missense	c.503	p.V168A	0.591	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Leu-rich_rpt,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Small_GTPase,superfamily_Kinase-like_dom,superfamily_P-loop_NTPase,superfamily_Ankyrin_rpt-contain_dom,superfamily_WD40_repeat_dom,smart_Ankyrin_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Ankyrin_rpt-contain_dom,pfscan_Prot_kinase_dom	-	no_errors	LRRK1	HGNC	ENSG00000154237				227	0	0	124	39	23.9264
CHSY1	0	genome.wustl.edu	37	15	101718849	101718849	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	15	101718849	101718849	A	G	SNP	CHSY1	ENST00000254190	human	ensembl	74_37	-1	known	missense	c.1153	p.Y385H	1.000	pfam_Chond_GalNAc	pfam_Chond_GalNAc,pfam_Fringe-like	-	no_errors	CHSY1	HGNC	ENSG00000131873				143	1	0.694444	94	11	10.4762
DNM1P47	0	genome.wustl.edu	37	15	102312899	102312899	+	RNA	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	15	102312899	102312899	T	C	SNP	DNM1P47	ENST00000561463	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.091	-	-	-	no_errors	DNM1P47	HGNC	ENSG00000259660				37	0	0	8	9	52.9412
HERC2P3	0	genome.wustl.edu	37	15	20649666	20649666	+	RNA	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	15	20649666	20649666	G	A	SNP	HERC2P3	ENST00000426501	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	HERC2P3	HGNC	ENSG00000180229				220	0	0	93	48	34.0426
OR4N4	0	genome.wustl.edu	37	15	22383083	22383083	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	15	22383083	22383083	G	T	SNP	OR4N4	ENST00000328795	human	ensembl	74_37	+1	known	missense	c.611	p.G204V	0.101	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4N4	HGNC	ENSG00000183706				149	0	0	76	22	22.449
NIPA1	0	genome.wustl.edu	37	15	23048972	23048972	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	15	23048972	23048972	A	G	SNP	NIPA1	ENST00000337435	human	ensembl	74_37	-1	known	missense	c.847	p.W283R	1.000	pfam_Mg_trans_NIPA	pfam_Mg_trans_NIPA	-	no_errors	NIPA1	HGNC	ENSG00000170113				88	0	0	49	7	12.5
HERC2P2	0	genome.wustl.edu	37	15	23300064	23300064	+	RNA	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	15	23300064	23300064	C	T	SNP	HERC2P2	ENST00000560464	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.994	-	-	-	no_errors	HERC2P2	HGNC	ENSG00000140181				43	0	0	17	8	32
HERC2P2	0	genome.wustl.edu	37	15	23330123	23330123	+	RNA	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	15	23330123	23330123	C	T	SNP	HERC2P2	ENST00000560464	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	HERC2P2	HGNC	ENSG00000140181				129	0	0	78	31	28.4404
HERC2P2	0	genome.wustl.edu	37	15	23331006	23331006	+	RNA	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	15	23331006	23331006	G	A	SNP	HERC2P2	ENST00000560464	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	HERC2P2	HGNC	ENSG00000140181				46	0	0	22	6	21.4286
NPAP1	0	genome.wustl.edu	37	15	24921046	24921046	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	15	24921046	24921046	G	A	SNP	NPAP1	ENST00000329468	human	ensembl	74_37	+1	known	missense	c.32	p.G11E	0.000	NULL	NULL	-	no_errors	NPAP1	HGNC	ENSG00000185823				30	0	0	7	5	41.6667
SNORD116-13	0	genome.wustl.edu	37	15	25324286	25324286	+	RNA	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	15	25324286	25324286	A	G	SNP	SNORD116-13	ENST00000384408	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.085	-	-	-	no_errors	SNORD116-13	HGNC	ENSG00000207137				174	0	0	107	36	25.1748
SNORD116-16	0	genome.wustl.edu	37	15	25327982	25327982	+	RNA	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	15	25327982	25327982	C	T	SNP	SNORD116-16	ENST00000384533	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.104	-	-	-	no_errors	SNORD116-16	HGNC	ENSG00000207263				284	1	0.350877	134	54	28.7234
SNHG14	0	genome.wustl.edu	37	15	25334977	25334977	+	RNA	SNP	G	G	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	15	25334977	25334977	G	C	SNP	SNHG14	ENST00000546682	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	SNHG14	HGNC	ENSG00000224078				47	0	0	22	16	42.1053
HERC2	0	genome.wustl.edu	37	15	28366538	28366538	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	15	28366538	28366538	A	G	SNP	HERC2	ENST00000261609	human	ensembl	74_37	-1	known	missense	c.13226	p.V4409A	1.000	NULL	pfam_Reg_chr_condens,pfam_HECT,pfam_CPH_domain,pfam_Mib_Herc2,pfam_Cyt_B5-like_heme/steroid-bd,pfam_Znf_ZZ,pfam_APC_su10/DOC_dom,superfamily_RCC1/BLIP-II,superfamily_HECT,superfamily_Galactose-bd-like,superfamily_Cyt_B5-like_heme/steroid-bd,superfamily_UBA-like,superfamily_CUB_dom,smart_Beta-propeller_rpt_TECPR,smart_Znf_ZZ,smart_HECT,pfscan_HECT,pfscan_Znf_ZZ,pfscan_Reg_chr_condens,pfscan_Cyt_B5-like_heme/steroid-bd,prints_Reg_chr_condens	-	no_errors	HERC2	HGNC	ENSG00000128731				157	0	0	64	29	31.1828
HERC2	0	genome.wustl.edu	37	15	28386594	28386594	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	15	28386594	28386594	A	G	SNP	HERC2	ENST00000261609	human	ensembl	74_37	-1	known	missense	c.11999	p.V4000A	1.000	superfamily_RCC1/BLIP-II,smart_Beta-propeller_rpt_TECPR,pfscan_Reg_chr_condens	pfam_Reg_chr_condens,pfam_HECT,pfam_CPH_domain,pfam_Mib_Herc2,pfam_Cyt_B5-like_heme/steroid-bd,pfam_Znf_ZZ,pfam_APC_su10/DOC_dom,superfamily_RCC1/BLIP-II,superfamily_HECT,superfamily_Galactose-bd-like,superfamily_Cyt_B5-like_heme/steroid-bd,superfamily_UBA-like,superfamily_CUB_dom,smart_Beta-propeller_rpt_TECPR,smart_Znf_ZZ,smart_HECT,pfscan_HECT,pfscan_Znf_ZZ,pfscan_Reg_chr_condens,pfscan_Cyt_B5-like_heme/steroid-bd,prints_Reg_chr_condens	-	no_errors	HERC2	HGNC	ENSG00000128731				103	0	0	40	20	33.3333
HERC2	0	genome.wustl.edu	37	15	28413568	28413568	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	15	28413568	28413568	C	T	SNP	HERC2	ENST00000261609	human	ensembl	74_37	-1	known	nonsense	c.10398	p.W3466*	1.000	NULL	pfam_Reg_chr_condens,pfam_HECT,pfam_CPH_domain,pfam_Mib_Herc2,pfam_Cyt_B5-like_heme/steroid-bd,pfam_Znf_ZZ,pfam_APC_su10/DOC_dom,superfamily_RCC1/BLIP-II,superfamily_HECT,superfamily_Galactose-bd-like,superfamily_Cyt_B5-like_heme/steroid-bd,superfamily_UBA-like,superfamily_CUB_dom,smart_Beta-propeller_rpt_TECPR,smart_Znf_ZZ,smart_HECT,pfscan_HECT,pfscan_Znf_ZZ,pfscan_Reg_chr_condens,pfscan_Cyt_B5-like_heme/steroid-bd,prints_Reg_chr_condens	-	no_errors	HERC2	HGNC	ENSG00000128731				346	0	0	163	55	25.2294
HERC2	0	genome.wustl.edu	37	15	28447491	28447491	+	Splice_Site	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	15	28447491	28447491	A	G	SNP	HERC2	ENST00000261609	human	ensembl	74_37	-1	known	splice_site	c.7480+2	e45+2	0.997	-	-	-	no_errors	HERC2	HGNC	ENSG00000128731				96	0	0	58	6	9.375
HERC2	0	genome.wustl.edu	37	15	28511077	28511077	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	15	28511077	28511077	G	A	SNP	HERC2	ENST00000261609	human	ensembl	74_37	-1	known	nonsense	c.1642	p.Q548*	1.000	pfam_Reg_chr_condens,superfamily_RCC1/BLIP-II,pfscan_Reg_chr_condens	pfam_Reg_chr_condens,pfam_HECT,pfam_CPH_domain,pfam_Mib_Herc2,pfam_Cyt_B5-like_heme/steroid-bd,pfam_Znf_ZZ,pfam_APC_su10/DOC_dom,superfamily_RCC1/BLIP-II,superfamily_HECT,superfamily_Galactose-bd-like,superfamily_Cyt_B5-like_heme/steroid-bd,superfamily_UBA-like,superfamily_CUB_dom,smart_Beta-propeller_rpt_TECPR,smart_Znf_ZZ,smart_HECT,pfscan_HECT,pfscan_Znf_ZZ,pfscan_Reg_chr_condens,pfscan_Cyt_B5-like_heme/steroid-bd,prints_Reg_chr_condens	-	no_errors	HERC2	HGNC	ENSG00000128731				78	0	0	38	11	22.449
LOC101929232	0	genome.wustl.edu	37	15	29037118	29037118	+	RNA	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	15	29037118	29037118	C	T	SNP	LOC101929232	ENST00000562423	human	ensembl	74_37	+1	putative	rna	NULL	NULL	0.996	-	-	-	no_errors	RP11-578F21.12	Clone_based_vega_gene	ENSG00000261377				45	0	0	25	6	19.3548
APBA2	0	genome.wustl.edu	37	15	29398920	29398920	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	15	29398920	29398920	G	A	SNP	APBA2	ENST00000558259	human	ensembl	74_37	+1	known	silent	c.1815	p.P605	0.026	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_PTB/PI_dom,pfam_PDZ,superfamily_PDZ,smart_PTB/PI_dom,smart_PDZ,pfscan_PDZ,pfscan_PTB/PI_dom	-	no_errors	APBA2	HGNC	ENSG00000034053				143	0	0	72	22	23.4043
OTUD7A	0	genome.wustl.edu	37	15	31776478	31776478	+	Silent	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	15	31776478	31776478	C	T	SNP	OTUD7A	ENST00000382902	human	ensembl	74_37	-1	known	silent	c.1821	p.P607	0.001	NULL	pfam_OTU,superfamily_UBA-like,smart_Znf_A20,pfscan_OTU,pfscan_Znf_A20	-	no_errors	OTUD7A	HGNC	ENSG00000169918				24	0	0	2	5	71.4286
RYR3	0	genome.wustl.edu	37	15	33603275	33603275	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	15	33603275	33603275	A	T	SNP	RYR3	ENST00000389232	human	ensembl	74_37	+1	known	missense	c.29	p.D10V	1.000	NULL	pfam_Ryanodine_rcpt,pfam_Ca-rel_channel,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ConA-like_lec_gl_sf,superfamily_4_helix_cytokine-like_core,superfamily_ARM-type_fold,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_hand_dom,pfscan_MIR_motif	-	no_errors	RYR3	HGNC	ENSG00000198838				48	0	0	16	12	42.8571
RYR3	0	genome.wustl.edu	37	15	33954568	33954568	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	15	33954568	33954568	A	G	SNP	RYR3	ENST00000389232	human	ensembl	74_37	+1	known	missense	c.4837	p.I1613V	1.000	NULL	pfam_Ryanodine_rcpt,pfam_Ca-rel_channel,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ConA-like_lec_gl_sf,superfamily_4_helix_cytokine-like_core,superfamily_ARM-type_fold,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_hand_dom,pfscan_MIR_motif	-	no_errors	RYR3	HGNC	ENSG00000198838				37	0	0	19	3	13.6364
RYR3	0	genome.wustl.edu	37	15	33990089	33990089	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	15	33990089	33990089	A	G	SNP	RYR3	ENST00000389232	human	ensembl	74_37	+1	known	missense	c.6141	p.I2047M	0.997	pfam_Ca-rel_channel	pfam_Ryanodine_rcpt,pfam_Ca-rel_channel,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ConA-like_lec_gl_sf,superfamily_4_helix_cytokine-like_core,superfamily_ARM-type_fold,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_hand_dom,pfscan_MIR_motif	-	no_errors	RYR3	HGNC	ENSG00000198838				179	0	0	91	26	22.2222
RYR3	0	genome.wustl.edu	37	15	34102718	34102718	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	15	34102718	34102718	G	A	SNP	RYR3	ENST00000389232	human	ensembl	74_37	+1	known	silent	c.10065	p.R3355	0.979	superfamily_ARM-type_fold	pfam_Ryanodine_rcpt,pfam_Ca-rel_channel,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ConA-like_lec_gl_sf,superfamily_4_helix_cytokine-like_core,superfamily_ARM-type_fold,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_hand_dom,pfscan_MIR_motif	-	no_errors	RYR3	HGNC	ENSG00000198838				93	0	0	60	6	9.09091
ACTC1	0	genome.wustl.edu	37	15	35086915	35086915	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	15	35086915	35086915	A	G	SNP	ACTC1	ENST00000290378	human	ensembl	74_37	-1	known	missense	c.95	p.V32A	1.000	pfam_Actin-related,smart_Actin-related,prints_Actin-related	pfam_Actin-related,smart_Actin-related,prints_Actin-related	-	no_errors	ACTC1	HGNC	ENSG00000159251				112	0	0	63	18	22.2222
FAM98B	0	genome.wustl.edu	37	15	38756237	38756237	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	15	38756237	38756237	A	G	SNP	FAM98B	ENST00000397609	human	ensembl	74_37	+1	known	missense	c.76	p.K26E	1.000	pfam_Uncharacterised_FAM98	pfam_Uncharacterised_FAM98	-	no_errors	FAM98B	HGNC	ENSG00000171262				63	0	0	49	4	7.54717
THBS1	0	genome.wustl.edu	37	15	39874866	39874866	+	Silent	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	15	39874866	39874866	C	T	SNP	THBS1	ENST00000260356	human	ensembl	74_37	+1	known	silent	c.540	p.D180	0.019	superfamily_ConA-like_lec_gl_sf,smart_Laminin_G	pfam_Thrombospondin_C,pfam_Thrombospondin_1_rpt,pfam_VWF_C,pfam_Thrombospondin_3-like_rpt,pfam_EGF-like_Ca-bd_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Thrombospondin_1_rpt,smart_Laminin_G,smart_VWF_C,smart_Thrombospondin_1_rpt,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Thrombospondin_1_rpt,pfscan_VWF_C	-	no_errors	THBS1	HGNC	ENSG00000137801				96	0	0	45	24	34.7826
THBS1	0	genome.wustl.edu	37	15	39877747	39877747	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	15	39877747	39877747	G	A	SNP	THBS1	ENST00000260356	human	ensembl	74_37	+1	known	missense	c.1103	p.C368Y	1.000	pfam_VWF_C,smart_VWF_C,pfscan_VWF_C	pfam_Thrombospondin_C,pfam_Thrombospondin_1_rpt,pfam_VWF_C,pfam_Thrombospondin_3-like_rpt,pfam_EGF-like_Ca-bd_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Thrombospondin_1_rpt,smart_Laminin_G,smart_VWF_C,smart_Thrombospondin_1_rpt,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Thrombospondin_1_rpt,pfscan_VWF_C	-	no_errors	THBS1	HGNC	ENSG00000137801				112	0	0	52	19	26.7606
DNAJC17	0	genome.wustl.edu	37	15	41068826	41068826	+	Splice_Site	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	15	41068826	41068826	C	T	SNP	DNAJC17	ENST00000220496	human	ensembl	74_37	-1	known	splice_site	c.296-1	e5-1	1.000	-	-	-	no_errors	DNAJC17	HGNC	ENSG00000104129				270	0	0	184	17	8.45771
RPAP1	0	genome.wustl.edu	37	15	41812933	41812933	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	15	41812933	41812933	G	A	SNP	RPAP1	ENST00000304330	human	ensembl	74_37	-1	known	missense	c.3451	p.P1151S	1.000	NULL	pfam_RNA_pol_II_AP1_C,pfam_RNA_pol_II_AP1_N,superfamily_ARM-type_fold	-	no_errors	RPAP1	HGNC	ENSG00000103932				145	1	0.684932	71	34	32.381
RPAP1	0	genome.wustl.edu	37	15	41817238	41817238	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	15	41817238	41817238	G	A	SNP	RPAP1	ENST00000304330	human	ensembl	74_37	-1	known	missense	c.2026	p.R676C	0.981	NULL	pfam_RNA_pol_II_AP1_C,pfam_RNA_pol_II_AP1_N,superfamily_ARM-type_fold	-	no_errors	RPAP1	HGNC	ENSG00000103932				106	0	0	53	25	32.0513
PLA2G4F	0	genome.wustl.edu	37	15	42442320	42442320	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	15	42442320	42442320	C	A	SNP	PLA2G4F	ENST00000397272	human	ensembl	74_37	-1	known	missense	c.905	p.S302I	0.040	smart_LysoPLipase_cat_dom	pfam_LysoPLipase_cat_dom,pfam_C2_dom,superfamily_Acyl_Trfase/lysoPLipase,superfamily_C2_dom,smart_C2_dom,smart_LysoPLipase_cat_dom,pfscan_C2_dom,pfscan_LysoPLipase_cat_dom	-	no_errors	PLA2G4F	HGNC	ENSG00000168907				93	0	0	62	4	6.06061
LRRC57	0	genome.wustl.edu	37	15	42840347	42840347	+	Silent	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	15	42840347	42840347	C	T	SNP	LRRC57	ENST00000323443	human	ensembl	74_37	-1	known	silent	c.180	p.K60	1.000	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC57	HGNC	ENSG00000180979				186	0	0	113	46	28.9308
CDAN1	0	genome.wustl.edu	37	15	43022951	43022951	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	15	43022951	43022951	G	A	SNP	CDAN1	ENST00000356231	human	ensembl	74_37	-1	known	silent	c.2019	p.V673	0.923	NULL	NULL	-	no_errors	CDAN1	HGNC	ENSG00000140326				49	0	0	15	10	40
EPB42	0	genome.wustl.edu	37	15	43500866	43500866	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	15	43500866	43500866	G	A	SNP	EPB42	ENST00000300215	human	ensembl	74_37	-1	known	nonsense	c.1030	p.Q344*	0.875	pfam_Transglutaminase-like,smart_Transglutaminase-like	pfam_Transglutaminase_C,pfam_Transglutaminase_N,pfam_Transglutaminase-like,superfamily_Ig_E-set,superfamily_Transglutaminase_C,smart_Transglutaminase-like	-	no_errors	EPB42	HGNC	ENSG00000166947				559	0	0	308	161	34.3284
TP53BP1	0	genome.wustl.edu	37	15	43724632	43724632	+	Silent	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	15	43724632	43724632	A	G	SNP	TP53BP1	ENST00000382044	human	ensembl	74_37	-1	known	silent	c.3435	p.S1145	0.195	NULL	pfam_53-BP1_Tudor,superfamily_BRCT_dom,smart_BRCT_dom,pfscan_BRCT_dom	-	no_errors	TP53BP1	HGNC	ENSG00000067369				279	0	0	144	66	31.4286
PDIA3	0	genome.wustl.edu	37	15	44057709	44057709	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	15	44057709	44057709	T	C	SNP	PDIA3	ENST00000300289	human	ensembl	74_37	+1	known	missense	c.664	p.Y222H	0.858	superfamily_Thioredoxin-like_fold,tigrfam_Prot_disulphide_isomerase	pfam_Thioredoxin_domain,superfamily_Thioredoxin-like_fold,prints_Thioredoxin,tigrfam_Prot_disulphide_isomerase,tigrfam_Disulphide_isomerase	-	no_errors	PDIA3	HGNC	ENSG00000167004				308	0	0	141	97	40.7563
CTDSPL2	0	genome.wustl.edu	37	15	44816478	44816478	+	RNA	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	15	44816478	44816478	G	A	SNP	CTDSPL2	ENST00000559738	human	ensembl	74_37	+1	putative	rna	NULL	NULL	1.000	-	-	-	no_errors	CTDSPL2	HGNC	ENSG00000137770				39	0	0	9	3	25
SPG11	0	genome.wustl.edu	37	15	44944092	44944092	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	15	44944092	44944092	G	C	SNP	SPG11	ENST00000261866	human	ensembl	74_37	-1	known	missense	c.1053	p.N351K	0.046	NULL	NULL	-	no_errors	SPG11	HGNC	ENSG00000104133				120	0	0	68	5	6.84932
DUOX2	0	genome.wustl.edu	37	15	45404884	45404884	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	15	45404884	45404884	A	G	SNP	DUOX2	ENST00000389039	human	ensembl	74_37	-1	known	missense	c.193	p.Y65H	0.999	pfam_Haem_peroxidase_animal,superfamily_Haem_peroxidase,pfscan_Haem_peroxidase_animal,prints_Haem_peroxidase_animal_subgr	pfam_Haem_peroxidase_animal,pfam_Fe_red_NAD-bd_6,pfam_FAD-bd_8,pfam_Fe3_Rdtase_TM_dom,pfam_EF_hand_dom,superfamily_Haem_peroxidase,superfamily_Riboflavin_synthase-like_b-brl,smart_EF_hand_dom,pfscan_EF_hand_dom,pfscan_Haem_peroxidase_animal,prints_Haem_peroxidase_animal_subgr,prints_Recoverin	-	no_errors	DUOX2	HGNC	ENSG00000140279				109	1	0.909091	64	22	25.5814
SLC28A2	0	genome.wustl.edu	37	15	45564563	45564563	+	Silent	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	15	45564563	45564563	T	C	SNP	SLC28A2	ENST00000347644	human	ensembl	74_37	+1	known	silent	c.1719	p.C573	1.000	pfam_Nucleos_tra2_C,tigrfam_C_nuclsd_transpt_met_bac	pfam_Nucleos_tra2_C,pfam_Nuclsd_transpt2,pfam_Nucleoside_recog_Gate,tigrfam_C_nuclsd_transpt_met_bac	-	no_errors	SLC28A2	HGNC	ENSG00000137860				163	0	0	55	44	44.4444
BLOC1S6	0	genome.wustl.edu	37	15	45898717	45898717	+	RNA	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	15	45898717	45898717	T	C	SNP	BLOC1S6	ENST00000563160	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.004	-	-	-	no_errors	BLOC1S6	HGNC	ENSG00000104164				252	0	0	177	22	11.0553
SLC12A1	0	genome.wustl.edu	37	15	48543836	48543836	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	15	48543836	48543836	A	G	SNP	SLC12A1	ENST00000380993	human	ensembl	74_37	+1	known	missense	c.1811	p.Y604C	1.000	pfam_AA-permease/SLC12A_dom,tigrfam_Na/K/Cl_cotransptS	pfam_AA-permease/SLC12A_dom,pfam_AA_permease_N,prints_Na/K/Cl_cotranspt2,prints_Na/K/Cl_cotranspt,tigrfam_Na/K/Cl_cotransptS	-	no_errors	SLC12A1	HGNC	ENSG00000074803				88	0	0	45	18	28.5714
COPS2	0	genome.wustl.edu	37	15	49447732	49447732	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	15	49447732	49447732	T	C	SNP	COPS2	ENST00000299259	human	ensembl	74_37	-1	known	missense	c.44	p.D15G	1.000	NULL	pfam_PCI_dom,smart_PAM,smart_PCI_dom	-	no_errors	COPS2	HGNC	ENSG00000166200				96	0	0	70	4	5.40541
HDC	0	genome.wustl.edu	37	15	50540453	50540453	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	15	50540453	50540453	G	C	SNP	HDC	ENST00000267845	human	ensembl	74_37	-1	known	missense	c.1129	p.H377D	1.000	pfam_PyrdxlP-dep_de-COase,superfamily_PyrdxlP-dep_Trfase	pfam_PyrdxlP-dep_de-COase,superfamily_PyrdxlP-dep_Trfase,prints_Aromatic_deC	-	no_errors	HDC	HGNC	ENSG00000140287				60	0	0	48	8	14.2857
TRPM7	0	genome.wustl.edu	37	15	50888464	50888464	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	15	50888464	50888464	A	G	SNP	TRPM7	ENST00000313478	human	ensembl	74_37	-1	known	missense	c.3278	p.I1093T	1.000	pfam_Ion_trans_dom	pfam_MHCK_EF2_kinase,pfam_Ion_trans_dom,superfamily_Kinase-like_dom,smart_MHCK_EF2_kinase,pfscan_MHCK_EF2_kinase	-	no_errors	TRPM7	HGNC	ENSG00000092439				27	0	0	20	6	23.0769
TRPM7	0	genome.wustl.edu	37	15	50899395	50899395	+	Splice_Site	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	15	50899395	50899395	A	G	SNP	TRPM7	ENST00000313478	human	ensembl	74_37	-1	known	splice_site	c.2709+2	e20+2	1.000	-	-	-	no_errors	TRPM7	HGNC	ENSG00000092439				68	0	0	41	4	8.88889
TRPM7	0	genome.wustl.edu	37	15	50931740	50931740	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	15	50931740	50931740	C	T	SNP	TRPM7	ENST00000313478	human	ensembl	74_37	-1	known	missense	c.541	p.A181T	1.000	NULL	pfam_MHCK_EF2_kinase,pfam_Ion_trans_dom,superfamily_Kinase-like_dom,smart_MHCK_EF2_kinase,pfscan_MHCK_EF2_kinase	-	no_errors	TRPM7	HGNC	ENSG00000092439				176	0	0	72	23	24.2105
AP4E1	0	genome.wustl.edu	37	15	51207723	51207723	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	15	51207723	51207723	G	A	SNP	AP4E1	ENST00000261842	human	ensembl	74_37	+1	known	missense	c.301	p.A101T	1.000	pfam_Clathrin/coatomer_adapt-like_N,superfamily_ARM-type_fold,pirsf_AP4_complex_esu	pfam_Clathrin/coatomer_adapt-like_N,pfam_Coatomer_bsu_C,superfamily_ARM-type_fold,pirsf_AP4_complex_esu	-	no_errors	AP4E1	HGNC	ENSG00000081014				187	0	0	89	43	32.5758
DMXL2	0	genome.wustl.edu	37	15	51830437	51830437	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	15	51830437	51830437	G	A	SNP	DMXL2	ENST00000543779	human	ensembl	74_37	-1	known	missense	c.1318	p.R440W	1.000	NULL	pfam_Rav1p_C,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DMXL2	HGNC	ENSG00000104093				230	0	0	163	53	24.537
DMXL2	0	genome.wustl.edu	37	15	51856325	51856325	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	15	51856325	51856325	C	T	SNP	DMXL2	ENST00000543779	human	ensembl	74_37	-1	known	missense	c.497	p.C166Y	1.000	superfamily_WD40_repeat_dom,smart_WD40_repeat	pfam_Rav1p_C,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DMXL2	HGNC	ENSG00000104093				172	0	0	111	34	23.4483
MYO5C	0	genome.wustl.edu	37	15	52563983	52563983	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	15	52563983	52563983	G	A	SNP	MYO5C	ENST00000261839	human	ensembl	74_37	-1	known	missense	c.809	p.S270L	1.000	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Dil_domain,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_Dilute,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO5C	HGNC	ENSG00000128833				59	0	0	46	10	17.8571
UNC13C	0	genome.wustl.edu	37	15	54914556	54914556	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	15	54914556	54914556	A	G	SNP	UNC13C	ENST00000260323	human	ensembl	74_37	+1	known	missense	c.6138	p.I2046M	0.995	superfamily_C2_dom	pfam_Munc13_subgr_dom-2,pfam_Ca-dep_secretion_activator,pfam_C2_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_C2_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_C2_dom,pfscan_C2_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,prints_C2_dom	-	no_errors	UNC13C	HGNC	ENSG00000137766				160	0	0	120	11	8.39695
CCPG1	0	genome.wustl.edu	37	15	55664072	55664072	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	15	55664072	55664072	G	A	SNP	CCPG1	ENST00000310958	human	ensembl	74_37	-1	known	missense	c.625	p.R209C	0.465	NULL	NULL	-	no_errors	CCPG1	HGNC	ENSG00000260916				147	0	0	90	5	5.26316
NEDD4	0	genome.wustl.edu	37	15	56207696	56207696	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	15	56207696	56207696	T	C	SNP	NEDD4	ENST00000508342	human	ensembl	74_37	-1	known	missense	c.1334	p.Q445R	0.993	NULL	pfam_HECT,pfam_WW_dom,superfamily_HECT,superfamily_WW_dom,superfamily_C2_dom,smart_WW_dom,smart_HECT,pfscan_HECT,pfscan_WW_dom	-	no_errors	NEDD4	HGNC	ENSG00000069869				194	0	0	103	43	29.4521
RFX7	0	genome.wustl.edu	37	15	56436621	56436621	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	15	56436621	56436621	C	T	SNP	RFX7	ENST00000423270	human	ensembl	74_37	-1	known	missense	c.256	p.G86S	1.000	NULL	pfam_DNA-bd_RFX	-	no_errors	RFX7	HGNC	ENSG00000181827				123	0	0	70	15	17.6471
ALDH1A2	0	genome.wustl.edu	37	15	58285217	58285217	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	15	58285217	58285217	C	A	SNP	ALDH1A2	ENST00000249750	human	ensembl	74_37	-1	known	missense	c.610	p.G204C	1.000	pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH	pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH	-	no_errors	ALDH1A2	HGNC	ENSG00000128918				129	0	0	101	6	5.60748
RNF111	0	genome.wustl.edu	37	15	59373220	59373220	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	15	59373220	59373220	G	A	SNP	RNF111	ENST00000434298	human	ensembl	74_37	+1	known	silent	c.2034	p.P678	0.197	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF111	HGNC	ENSG00000157450				352	0	0	174	93	34.8315
TLN2	0	genome.wustl.edu	37	15	63055814	63055814	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	15	63055814	63055814	C	T	SNP	TLN2	ENST00000306829	human	ensembl	74_37	+1	known	missense	c.5014	p.R1672W	0.983	NULL	pfam_Talin_cent,pfam_ILWEQ_dom,pfam_Vinculin-bd_dom,pfam_FERM_N,pfam_FERM_central,pfam_Insln_rcpt_S1,superfamily_Talin_cent,superfamily_Vinculin/catenin,superfamily_FERM_central,smart_Band_41_domain,smart_ILWEQ_dom,pfscan_FERM_domain,pfscan_ILWEQ_dom	-	no_errors	TLN2	HGNC	ENSG00000171914				61	0	0	29	11	27.5
LACTB	0	genome.wustl.edu	37	15	63433782	63433782	+	Silent	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	15	63433782	63433782	T	C	SNP	LACTB	ENST00000261893	human	ensembl	74_37	+1	known	silent	c.1422	p.G474	0.166	pfam_Beta-lactam-related,superfamily_Beta-lactam/transpept-like	pfam_Beta-lactam-related,superfamily_Beta-lactam/transpept-like	-	no_errors	LACTB	HGNC	ENSG00000103642				104	0	0	81	10	10.989
HERC1	0	genome.wustl.edu	37	15	63956768	63956768	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	15	63956768	63956768	T	C	SNP	HERC1	ENST00000443617	human	ensembl	74_37	-1	known	missense	c.8581	p.N2861D	1.000	NULL	pfam_Reg_chr_condens,pfam_HECT,pfam_WD40_repeat,pfam_SPRY_rcpt,superfamily_RCC1/BLIP-II,superfamily_HECT,superfamily_WD40_repeat_dom,superfamily_ConA-like_lec_gl_sf,superfamily_UBA-like,superfamily_ARM-type_fold,smart_SPla/RYanodine_receptor_subgr,smart_WD40_repeat,smart_HECT,pfscan_B30.2/SPRY,pfscan_HECT,pfscan_Reg_chr_condens,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Reg_chr_condens	-	no_errors	HERC1	HGNC	ENSG00000103657				74	0	0	38	5	11.6279
DAPK2	0	genome.wustl.edu	37	15	64204153	64204153	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	15	64204153	64204153	G	C	SNP	DAPK2	ENST00000261891	human	ensembl	74_37	-1	known	missense	c.986	p.T329S	0.991	superfamily_Kinase-like_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_RIO-like_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	DAPK2	HGNC	ENSG00000035664				47	0	0	17	6	26.087
SNX22	0	genome.wustl.edu	37	15	64446697	64446697	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	15	64446697	64446697	C	A	SNP	SNX22	ENST00000325881	human	ensembl	74_37	+1	known	missense	c.572	p.P191Q	0.000	NULL	pfam_Phox,superfamily_Phox,smart_Phox,pfscan_Phox	-	no_errors	SNX22	HGNC	ENSG00000157734				394	1	0.253165	217	87	28.6184
PARP16	0	genome.wustl.edu	37	15	65559078	65559078	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	15	65559078	65559078	G	A	SNP	PARP16	ENST00000261888	human	ensembl	74_37	-1	known	missense	c.341	p.A114V	0.000	pfam_Poly(ADP-ribose)pol_cat_dom,pfscan_Poly(ADP-ribose)pol_cat_dom	pfam_Poly(ADP-ribose)pol_cat_dom,pfscan_Poly(ADP-ribose)pol_cat_dom	-	no_errors	PARP16	HGNC	ENSG00000138617				79	0	0	45	9	16.6667
MAP2K1	0	genome.wustl.edu	37	15	66774157	66774157	+	Silent	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	15	66774157	66774157	C	T	SNP	MAP2K1	ENST00000307102	human	ensembl	74_37	+1	known	silent	c.633	p.V211	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	MAP2K1	HGNC	ENSG00000169032				205	0	0	85	34	28.5714
ENSG00000259347	0	genome.wustl.edu	37	15	67293313	67293313	+	RNA	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	15	67293313	67293313	C	T	SNP	ENSG00000259347	ENST00000558097	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.999	-	-	-	no_errors	RP11-798K3.2	Clone_based_vega_gene	ENSG00000259347				25	0	0	20	5	20
SMAD3	0	genome.wustl.edu	37	15	67457298	67457298	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	15	67457298	67457298	T	C	SNP	SMAD3	ENST00000327367	human	ensembl	74_37	+1	known	missense	c.272	p.L91P	1.000	pfam_MAD_homology1_Dwarfin-type,superfamily_MAD_homology_MH1,smart_MAD_homology1_Dwarfin-type,pfscan_MAD_homology_MH1	pfam_SMAD_dom_Dwarfin-type,pfam_MAD_homology1_Dwarfin-type,pfam_Interferon_reg_factor-3,superfamily_SMAD_FHA_domain,superfamily_MAD_homology_MH1,smart_MAD_homology1_Dwarfin-type,smart_SMAD_dom_Dwarfin-type,pfscan_MAD_homology_MH1,pfscan_SMAD_dom_Dwarfin-type	-	no_errors	SMAD3	HGNC	ENSG00000166949				310	2	0.641026	151	69	31.3636
TLE3	0	genome.wustl.edu	37	15	70342461	70342461	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	15	70342461	70342461	G	T	SNP	TLE3	ENST00000558939	human	ensembl	74_37	-1	known	missense	c.2294	p.A765D	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom,prints_Groucho_enhance	pfam_Groucho/TLE_N,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Groucho_enhance	-	no_errors	TLE3	HGNC	ENSG00000140332				215	0	0	113	30	20.979
UACA	0	genome.wustl.edu	37	15	70961720	70961720	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	15	70961720	70961720	A	G	SNP	UACA	ENST00000322954	human	ensembl	74_37	-1	known	missense	c.1303	p.S435P	0.005	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,superfamily_Prefoldin,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_T_SNARE_dom,prints_Ankyrin_rpt	-	no_errors	UACA	HGNC	ENSG00000137831				163	0	0	94	6	6
UACA	0	genome.wustl.edu	37	15	70980154	70980154	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	15	70980154	70980154	C	T	SNP	UACA	ENST00000322954	human	ensembl	74_37	-1	known	missense	c.430	p.A144T	1.000	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,superfamily_Prefoldin,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_T_SNARE_dom,prints_Ankyrin_rpt	-	no_errors	UACA	HGNC	ENSG00000137831				122	0	0	42	21	33.3333
MYO9A	0	genome.wustl.edu	37	15	72192132	72192132	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	15	72192132	72192132	T	C	SNP	MYO9A	ENST00000424560	human	ensembl	74_37	-1	known	missense	c.3366	p.I1122M	0.954	pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS	pfam_Myosin_head_motor_dom,pfam_RhoGAP_dom,pfam_Ras-assoc,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,superfamily_Rho_GTPase_activation_prot,smart_Ras-assoc,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_RhoGAP_dom,pfscan_IQ_motif_EF-hand-BS,pfscan_Ras-assoc,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_RhoGAP_dom,prints_Myosin_head_motor_dom	-	no_errors	MYO9A	HGNC	ENSG00000066933				149	0	0	47	34	41.9753
CD276	0	genome.wustl.edu	37	15	73994824	73994824	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	15	73994824	73994824	G	A	SNP	CD276	ENST00000318443	human	ensembl	74_37	+1	known	missense	c.308	p.G103D	1.000	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	pfam_Ig_V-set,pfam_CD80_C2-set,pfam_Ig_C1-set,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Ig_C1-set,pfscan_Ig-like_dom	-	no_errors	CD276	HGNC	ENSG00000103855				73	0	0	42	21	33.3333
CD276	0	genome.wustl.edu	37	15	73995270	73995270	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	15	73995270	73995270	G	A	SNP	CD276	ENST00000318443	human	ensembl	74_37	+1	known	silent	c.576	p.T192	0.198	pfam_CD80_C2-set,pfam_Ig_C1-set,smart_Ig_sub,smart_Ig_sub2,smart_Ig_C1-set,pfscan_Ig-like_dom	pfam_Ig_V-set,pfam_CD80_C2-set,pfam_Ig_C1-set,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Ig_C1-set,pfscan_Ig-like_dom	-	no_errors	CD276	HGNC	ENSG00000103855				106	0	0	50	30	37.5
CYP11A1	0	genome.wustl.edu	37	15	74635445	74635445	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	15	74635445	74635445	A	G	SNP	CYP11A1	ENST00000268053	human	ensembl	74_37	-1	known	missense	c.863	p.L288S	0.000	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_mitochondrial,prints_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_B	-	no_errors	CYP11A1	HGNC	ENSG00000140459				155	0	0	93	34	26.7717
ARID3B	0	genome.wustl.edu	37	15	74836635	74836635	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	15	74836635	74836635	A	G	SNP	ARID3B	ENST00000346246	human	ensembl	74_37	+1	known	missense	c.358	p.K120E	0.978	NULL	pfam_ARID/BRIGHT_DNA-bd,superfamily_ARID/BRIGHT_DNA-bd,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID3B	HGNC	ENSG00000179361				69	0	0	51	3	5.55556
CLK3	0	genome.wustl.edu	37	15	74922144	74922144	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	15	74922144	74922144	G	A	SNP	CLK3	ENST00000395066	human	ensembl	74_37	+1	known	missense	c.1837	p.E613K	1.000	pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	CLK3	HGNC	ENSG00000179335				46	0	0	29	16	35.5556
CYP1A2	0	genome.wustl.edu	37	15	75047376	75047376	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	15	75047376	75047376	A	G	SNP	CYP1A2	ENST00000343932	human	ensembl	74_37	+1	known	missense	c.1498	p.K500E	1.000	superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-I_CYP1,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450	-	no_errors	CYP1A2	HGNC	ENSG00000140505				129	0	0	68	29	29.8969
MAN2C1	0	genome.wustl.edu	37	15	75648756	75648756	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	15	75648756	75648756	G	A	SNP	MAN2C1	ENST00000267978	human	ensembl	74_37	-1	known	silent	c.2772	p.A924	0.999	pfam_Glyco_hydro_38_C,superfamily_Gal_mutarotase_SF_dom	pfam_Glyco_hydro_38_N,pfam_Glyco_hydro_38_C,pfam_Glyco_hydro_38_cen_dom,superfamily_Gal_mutarotase_SF_dom,superfamily_Glyco_hydro/deAcase_b/a-brl,smart_Glyco_hydro_38_cen_dom	-	no_errors	MAN2C1	HGNC	ENSG00000140400				31	0	0	9	10	52.6316
SCAPER	0	genome.wustl.edu	37	15	77134163	77134163	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	15	77134163	77134163	T	C	SNP	SCAPER	ENST00000324767	human	ensembl	74_37	-1	known	missense	c.305	p.Y102C	1.000	NULL	smart_Znf_U1	-	no_errors	SCAPER	HGNC	ENSG00000140386				101	0	0	52	32	38.0952
PSTPIP1	0	genome.wustl.edu	37	15	77310814	77310814	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	15	77310814	77310814	C	T	SNP	PSTPIP1	ENST00000559785	human	ensembl	74_37	+1	known	missense	c.349	p.R117W	0.985	pfam_FCH_dom,superfamily_Prismane-like,smart_FCH_dom,pfscan_FCH_dom	pfam_FCH_dom,superfamily_Prismane-like,smart_FCH_dom,pfscan_FCH_dom	-	no_errors	PSTPIP1	HGNC	ENSG00000140368				11	0	0	3	3	50
LINGO1	0	genome.wustl.edu	37	15	77906403	77906403	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	15	77906403	77906403	T	C	SNP	LINGO1	ENST00000355300	human	ensembl	74_37	-1	known	missense	c.1846	p.N616D	1.000	NULL	pfam_Leu-rich_rpt,pfam_Ig_I-set,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	LINGO1	HGNC	ENSG00000169783				27	0	0	7	4	36.3636
CHRNA5	0	genome.wustl.edu	37	15	78873306	78873306	+	Splice_Site	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	15	78873306	78873306	T	C	SNP	CHRNA5	ENST00000299565	human	ensembl	74_37	+1	known	splice_site	c.258+2	e2+2	1.000	-	-	-	no_errors	CHRNA5	HGNC	ENSG00000169684				213	0	0	114	47	29.1925
CHRNB4	0	genome.wustl.edu	37	15	78923514	78923514	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	15	78923514	78923514	T	C	SNP	CHRNB4	ENST00000261751	human	ensembl	74_37	-1	known	missense	c.263	p.Y88C	1.000	pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,prints_Neur_channel,tigrfam_Neur_channel	pfam_Neurotrans-gated_channel_TM,pfam_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,prints_Nicotinic_acetylcholine_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	CHRNB4	HGNC	ENSG00000117971				132	0	0	99	9	8.33333
ADAMTS7	0	genome.wustl.edu	37	15	79058757	79058757	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	15	79058757	79058757	C	T	SNP	ADAMTS7	ENST00000388820	human	ensembl	74_37	-1	known	missense	c.3496	p.A1166T	0.055	NULL	pfam_ADAM_spacer1,pfam_Peptidase_M12B_N,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS7	HGNC	ENSG00000136378				49	0	0	19	15	44.1176
MESDC2	0	genome.wustl.edu	37	15	81282061	81282061	+	Silent	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	15	81282061	81282061	T	C	SNP	MESDC2	ENST00000261758	human	ensembl	74_37	-1	known	silent	c.72	p.L24	1.000	NULL	pfam_Mesoderm_development_cand-2	-	no_errors	MESDC2	HGNC	ENSG00000117899				89	0	0	31	9	22.5
BNC1	0	genome.wustl.edu	37	15	83933080	83933080	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	15	83933080	83933080	G	A	SNP	BNC1	ENST00000345382	human	ensembl	74_37	-1	known	missense	c.923	p.P308L	0.979	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	BNC1	HGNC	ENSG00000169594				185	0	0	89	31	25.8333
GOLGA6L5	0	genome.wustl.edu	37	15	85053127	85053127	+	RNA	SNP	T	T	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	15	85053127	85053127	T	G	SNP	GOLGA6L5	ENST00000414190	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	GOLGA6L5	HGNC	ENSG00000230373				12	0	0	11	5	31.25
GOLGA6L5	0	genome.wustl.edu	37	15	85053137	85053137	+	RNA	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	15	85053137	85053137	C	T	SNP	GOLGA6L5	ENST00000414190	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.120	-	-	-	no_errors	GOLGA6L5	HGNC	ENSG00000230373				11	0	0	11	5	31.25
PDE8A	0	genome.wustl.edu	37	15	85666327	85666327	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	15	85666327	85666327	A	G	SNP	PDE8A	ENST00000310298	human	ensembl	74_37	+1	known	missense	c.1988	p.D663G	1.000	pfam_PDEase_catalytic_dom,smart_HD/PDEase_dom	pfam_PDEase_catalytic_dom,pfam_Sig_transdc_resp-reg_receiver,pfam_PAS_fold,pfam_PAS_4,superfamily_PAS,superfamily_CheY-like_superfamily,smart_HD/PDEase_dom,pfscan_PAS,prints_PDEase,tigrfam_PAS	-	no_errors	PDE8A	HGNC	ENSG00000073417				136	0	0	98	12	10.9091
AKAP13	0	genome.wustl.edu	37	15	86278287	86278287	+	Silent	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	15	86278287	86278287	C	T	SNP	AKAP13	ENST00000361243	human	ensembl	74_37	+1	known	silent	c.7359	p.S2453	0.488	NULL	pfam_DH-domain,pfam_Pleckstrin_homology,superfamily_DH-domain,superfamily_Ankyrin_rpt-contain_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_DH-domain	-	no_errors	AKAP13	HGNC	ENSG00000170776				489	0	0	269	131	32.75
RLBP1	0	genome.wustl.edu	37	15	89758315	89758315	+	Silent	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	15	89758315	89758315	T	C	SNP	RLBP1	ENST00000268125	human	ensembl	74_37	-1	known	silent	c.501	p.Q167	0.983	pfam_CRAL-TRIO_dom,superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom	pfam_CRAL-TRIO_dom,pfam_CRAL/TRIO_N_dom,superfamily_CRAL-TRIO_dom,superfamily_CRAL/TRIO_N_dom,smart_CRAL-TRIO_dom,prints_CRAL-bd_toc_tran,pfscan_CRAL-TRIO_dom	-	no_errors	RLBP1	HGNC	ENSG00000140522				238	0	0	128	26	16.8831
POLG	0	genome.wustl.edu	37	15	89870444	89870444	+	Silent	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	15	89870444	89870444	A	G	SNP	POLG	ENST00000268124	human	ensembl	74_37	-1	known	silent	c.1387	p.L463	0.971	pirsf_DNA-dir_DNA_pol_A_mt_sub	pirsf_DNA-dir_DNA_pol_A_mt_sub,pfam_DNA-dir_DNA_pol_A_palm_dom,superfamily_RNaseH-like_dom,smart_DNA-dir_DNA_pol_A_palm_dom,prints_DNA-dir_DNA_pol_A_mt	-	no_errors	POLG	HGNC	ENSG00000140521				233	0	0	150	15	9.09091
TICRR	0	genome.wustl.edu	37	15	90169244	90169244	+	Silent	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	15	90169244	90169244	C	T	SNP	TICRR	ENST00000268138	human	ensembl	74_37	+1	known	silent	c.5554	p.L1852	0.997	NULL	NULL	-	no_errors	TICRR	HGNC	ENSG00000140534				107	0	0	69	25	26.5957
FURIN	0	genome.wustl.edu	37	15	91423207	91423207	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	15	91423207	91423207	G	A	SNP	FURIN	ENST00000268171	human	ensembl	74_37	+1	known	missense	c.1369	p.E457K	0.993	superfamily_Galactose-bd-like	pfam_Peptidase_S8/S53_dom,pfam_PrprotnconvertsP,superfamily_Peptidase_S8/S53_dom,superfamily_Galactose-bd-like,superfamily_Prot_inh_propept,superfamily_Growth_fac_rcpt_N_dom,smart_Furin_repeat,prints_Peptidase_S8_subtilisin-rel	-	no_errors	FURIN	HGNC	ENSG00000140564				66	0	0	38	14	26.9231
FURIN	0	genome.wustl.edu	37	15	91424194	91424194	+	Silent	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	15	91424194	91424194	C	T	SNP	FURIN	ENST00000268171	human	ensembl	74_37	+1	known	silent	c.1716	p.G572	1.000	superfamily_Galactose-bd-like	pfam_Peptidase_S8/S53_dom,pfam_PrprotnconvertsP,superfamily_Peptidase_S8/S53_dom,superfamily_Galactose-bd-like,superfamily_Prot_inh_propept,superfamily_Growth_fac_rcpt_N_dom,smart_Furin_repeat,prints_Peptidase_S8_subtilisin-rel	-	no_errors	FURIN	HGNC	ENSG00000140564				237	0	0	178	10	5.31915
ST8SIA2	0	genome.wustl.edu	37	15	92973323	92973323	+	Nonsense_Mutation	SNP	T	T	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	15	92973323	92973323	T	A	SNP	ST8SIA2	ENST00000268164	human	ensembl	74_37	+1	known	nonsense	c.143	p.L48*	1.000	pirsf_Sialyl_trans	pfam_Glyco_trans_29,pirsf_Sialyl_trans	-	no_errors	ST8SIA2	HGNC	ENSG00000140557				99	0	0	44	26	37.1429
IGF1R	0	genome.wustl.edu	37	15	99467785	99467785	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	15	99467785	99467785	A	G	SNP	IGF1R	ENST00000268035	human	ensembl	74_37	+1	known	missense	c.2654	p.Y885C	1.000	pirsf_Tyr_kinase_insulin-like_rcpt,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pirsf_Tyr_kinase_insulin-like_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Prot_kinase_dom,pfam_Furin-like_Cys-rich_dom,pfam_Fibronectin_type3,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt_N_dom,superfamily_Fibronectin_type3,smart_Furin_repeat,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom	-	no_errors	IGF1R	HGNC	ENSG00000140443				350	0	0	232	20	7.93651
CIITA	0	genome.wustl.edu	37	16	10989150	10989150	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	16	10989150	10989150	T	C	SNP	CIITA	ENST00000324288	human	ensembl	74_37	+1	known	missense	c.64	p.C22R	0.004	NULL	superfamily_P-loop_NTPase,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,prints_MHC_II_transact	-	no_errors	CIITA	HGNC	ENSG00000179583				101	0	0	49	25	33.7838
CLEC16A	0	genome.wustl.edu	37	16	11214490	11214490	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	16	11214490	11214490	C	T	SNP	CLEC16A	ENST00000409790	human	ensembl	74_37	+1	known	missense	c.2135	p.A712V	0.990	NULL	pfam_Uncharacterised_FPL	-	no_errors	CLEC16A	HGNC	ENSG00000038532				49	0	0	27	14	34.1463
BAIAP3	0	genome.wustl.edu	37	16	1394107	1394107	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	16	1394107	1394107	A	G	SNP	BAIAP3	ENST00000324385	human	ensembl	74_37	+1	known	missense	c.1576	p.T526A	0.993	NULL	pfam_C2_dom,pfam_Munc13_subgr_dom-2,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	-	no_errors	BAIAP3	HGNC	ENSG00000007516				106	0	0	44	20	31.25
BAIAP3	0	genome.wustl.edu	37	16	1397758	1397758	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	16	1397758	1397758	G	A	SNP	BAIAP3	ENST00000324385	human	ensembl	74_37	+1	known	silent	c.3066	p.A1022	0.270	superfamily_C2_dom	pfam_C2_dom,pfam_Munc13_subgr_dom-2,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	-	no_errors	BAIAP3	HGNC	ENSG00000007516				66	0	0	38	4	9.52381
ERCC4	0	genome.wustl.edu	37	16	14026125	14026125	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	16	14026125	14026125	A	G	SNP	ERCC4	ENST00000311895	human	ensembl	74_37	+1	known	missense	c.1085	p.E362G	0.208	tigrfam_Rad1	pfam_ERCC4_domain,superfamily_Restrct_endonuc-II-like,superfamily_RuvA_2-like,smart_ERCC4_domain,tigrfam_Rad1	-	no_errors	ERCC4	HGNC	ENSG00000175595				196	0	0	134	9	6.29371
CLCN7	0	genome.wustl.edu	37	16	1510448	1510448	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	16	1510448	1510448	C	T	SNP	CLCN7	ENST00000382745	human	ensembl	74_37	-1	known	missense	c.565	p.V189M	0.970	pfam_Cl-channel_volt-gated,superfamily_Cl-channel_core,prints_Cl_channel-7	pfam_Cl-channel_volt-gated,pfam_CBS_dom,superfamily_Cl-channel_core,smart_CBS_dom,prints_Cl-channel_volt-gated,prints_Cl_channel-7	-	no_errors	CLCN7	HGNC	ENSG00000103249				129	0	0	83	28	25.2252
PKD1P6	0	genome.wustl.edu	37	16	15224525	15224525	+	RNA	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	16	15224525	15224525	T	C	SNP	PKD1P6	ENST00000424133	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.966	-	-	-	no_errors	PKD1P6	HGNC	ENSG00000250251				69	0	0	21	17	44.7368
NDE1	0	genome.wustl.edu	37	16	15785075	15785075	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	16	15785075	15785075	G	A	SNP	NDE1	ENST00000396353	human	ensembl	74_37	+1	known	missense	c.598	p.E200K	0.628	pfam_NUDE_C	pfam_NUDE_C	-	no_errors	NDE1	HGNC	ENSG00000072864				105	0	0	45	26	36.6197
EME2	0	genome.wustl.edu	37	16	1825690	1825690	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	16	1825690	1825690	G	A	SNP	EME2	ENST00000307394	human	ensembl	74_37	+1	known	missense	c.937	p.V313M	0.053	pfam_ERCC4_domain,smart_ERCC4_domain	pfam_ERCC4_domain,smart_ERCC4_domain	-	no_errors	EME2	HGNC	ENSG00000197774				164	0	0	85	34	28.5714
SMG1	0	genome.wustl.edu	37	16	18856807	18856807	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	16	18856807	18856807	G	A	SNP	SMG1	ENST00000389467	human	ensembl	74_37	-1	known	silent	c.6163	p.L2055	0.991	superfamily_Kinase-like_dom,superfamily_ARM-type_fold	pfam_PI3/4_kinase_cat_dom,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	SMG1	HGNC	ENSG00000157106				103	0	0	54	29	34.9398
C16orf62	0	genome.wustl.edu	37	16	19590354	19590354	+	Silent	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	16	19590354	19590354	C	T	SNP	C16orf62	ENST00000448695	human	ensembl	74_37	+1	known	silent	c.48	p.D16	0.044	NULL	NULL	-	no_errors	C16orf62	HGNC	ENSG00000103544				43	0	0	20	12	37.5
ACSM2A	0	genome.wustl.edu	37	16	20491953	20491953	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	16	20491953	20491953	G	C	SNP	ACSM2A	ENST00000219054	human	ensembl	74_37	+1	known	missense	c.1340	p.R447P	0.996	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig	-	no_errors	ACSM2A	HGNC	ENSG00000183747				270	0	0	154	28	15.3846
ACSM2B	0	genome.wustl.edu	37	16	20554526	20554526	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	16	20554526	20554526	C	G	SNP	ACSM2B	ENST00000329697	human	ensembl	74_37	-1	known	missense	c.1340	p.R447P	0.998	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig	-	no_errors	ACSM2B	HGNC	ENSG00000066813				457	0	0	274	46	14.375
SLC9A3R2	0	genome.wustl.edu	37	16	2086386	2086386	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	16	2086386	2086386	A	G	SNP	SLC9A3R2	ENST00000424542	human	ensembl	74_37	+1	known	missense	c.476	p.Q159R	0.884	pfam_PDZ,superfamily_PDZ,smart_PDZ,pirsf_NaH_exchngr_reg_CF_NHE-RF,pfscan_PDZ	pfam_PDZ,pfam_EBP50_C-term,superfamily_PDZ,smart_PDZ,pirsf_NaH_exchngr_reg_CF_NHE-RF,pfscan_PDZ	-	no_errors	SLC9A3R2	HGNC	ENSG00000065054				30	0	0	10	5	33.3333
DNAH3	0	genome.wustl.edu	37	16	21123335	21123335	+	Silent	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	16	21123335	21123335	A	G	SNP	DNAH3	ENST00000261383	human	ensembl	74_37	-1	known	silent	c.1899	p.H633	0.971	superfamily_P-loop_NTPase	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,superfamily_Prefoldin,smart_AAA+_ATPase	-	no_errors	DNAH3	HGNC	ENSG00000158486				60	0	0	28	15	34.8837
TMEM159	0	genome.wustl.edu	37	16	21181777	21181777	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	16	21181777	21181777	C	T	SNP	TMEM159	ENST00000573487	human	ensembl	74_37	+1	known	missense	c.188	p.S63F	1.000	NULL	NULL	-	no_errors	TMEM159	HGNC	ENSG00000011638				424	0	0	276	20	6.75676
ZP2	0	genome.wustl.edu	37	16	21213112	21213112	+	Silent	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	16	21213112	21213112	T	C	SNP	ZP2	ENST00000219593	human	ensembl	74_37	-1	known	silent	c.1419	p.L473	0.000	pfam_ZP_dom,smart_ZP_dom,pfscan_ZP_dom	pfam_ZP_dom,smart_ZP_dom,pfscan_ZP_dom,prints_ZP_dom	-	no_errors	ZP2	HGNC	ENSG00000103310				245	0	0	137	62	31.1558
PKD1	0	genome.wustl.edu	37	16	2156476	2156476	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	16	2156476	2156476	G	A	SNP	PKD1	ENST00000262304	human	ensembl	74_37	-1	known	missense	c.7412	p.P2471L	0.997	pfam_PKD/REJ-like,pfscan_REJ-like,tigrfam_Polycystin_cat	pfam_PKD_dom,pfam_PKD1_2_channel,pfam_PKD/REJ-like,pfam_PLAT/LH2_dom,pfam_C-type_lectin,pfam_WSC_carb-bd,pfam_GPS_dom,superfamily_C-type_lectin_fold,superfamily_Lipase_LipOase,superfamily_PKD_dom,superfamily_Fe_hydrogenase,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_WSC_carb-bd_subgr,smart_PKD/Chitinase_dom,smart_C-type_lectin,smart_GPS_dom,smart_PLAT/LH2_dom,prints_PKD_1,pfscan_GPS_dom,pfscan_C-type_lectin,pfscan_PKD_dom,pfscan_PLAT/LH2_dom,pfscan_REJ-like,pfscan_WSC_carb-bd,tigrfam_Polycystin_cat	-	no_errors	PKD1	HGNC	ENSG00000008710				18	0	0	12	8	40
METTL9	0	genome.wustl.edu	37	16	21611071	21611071	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	16	21611071	21611071	G	A	SNP	METTL9	ENST00000358154	human	ensembl	74_37	+1	known	missense	c.17	p.G6D	0.979	NULL	pfam_DREV_MeTrfase,pfam_Methyltransf_12,pfam_Methyltransf_11	-	no_errors	METTL9	HGNC	ENSG00000197006				13	0	0	7	6	46.1538
PKD1	0	genome.wustl.edu	37	16	2161268	2161268	+	Silent	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	16	2161268	2161268	T	C	SNP	PKD1	ENST00000262304	human	ensembl	74_37	-1	known	silent	c.3900	p.E1300	0.987	smart_PKD/Chitinase_dom,tigrfam_Polycystin_cat	pfam_PKD_dom,pfam_PKD1_2_channel,pfam_PKD/REJ-like,pfam_PLAT/LH2_dom,pfam_C-type_lectin,pfam_WSC_carb-bd,pfam_GPS_dom,superfamily_C-type_lectin_fold,superfamily_Lipase_LipOase,superfamily_PKD_dom,superfamily_Fe_hydrogenase,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_WSC_carb-bd_subgr,smart_PKD/Chitinase_dom,smart_C-type_lectin,smart_GPS_dom,smart_PLAT/LH2_dom,prints_PKD_1,pfscan_GPS_dom,pfscan_C-type_lectin,pfscan_PKD_dom,pfscan_PLAT/LH2_dom,pfscan_REJ-like,pfscan_WSC_carb-bd,tigrfam_Polycystin_cat	-	no_errors	PKD1	HGNC	ENSG00000008710				49	0	0	20	14	41.1765
HBM	0	genome.wustl.edu	37	16	216278	216278	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	16	216278	216278	T	C	SNP	HBM	ENST00000356815	human	ensembl	74_37	+1	known	missense	c.104	p.V35A	0.000	pfam_Globin,superfamily_Globin-like,pfscan_Globin,prints_Haemoglobin_a	pfam_Globin,superfamily_Globin-like,pfscan_Globin,prints_Haemoglobin_a	-	no_errors	HBM	HGNC	ENSG00000206177				30	0	0	15	7	31.8182
RRN3P1	0	genome.wustl.edu	37	16	21823606	21823606	+	Splice_Site	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	16	21823606	21823606	C	T	SNP	RRN3P1	ENST00000551681	human	ensembl	74_37	-1	known	splice_site	c.NULL	NULL	1.000	-	-	-	no_errors	RRN3P1	HGNC	ENSG00000248124				38	0	0	20	5	20
TRAF7	0	genome.wustl.edu	37	16	2222242	2222242	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	16	2222242	2222242	G	A	SNP	TRAF7	ENST00000326181	human	ensembl	74_37	+1	known	missense	c.526	p.A176T	0.984	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_TRAF-like,smart_Znf_RING,smart_WD40_repeat,pfscan_Znf_RING,pfscan_Znf_TRAF,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	TRAF7	HGNC	ENSG00000131653				70	0	0	31	11	26.1905
EEF2K	0	genome.wustl.edu	37	16	22271788	22271788	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	16	22271788	22271788	C	T	SNP	EEF2K	ENST00000263026	human	ensembl	74_37	+1	known	missense	c.1237	p.P413S	1.000	pirsf_Elongation_factor_2_kinase	pfam_MHCK_EF2_kinase,pfam_Sel1-like,superfamily_Kinase-like_dom,smart_MHCK_EF2_kinase,pirsf_Elongation_factor_2_kinase,pfscan_MHCK_EF2_kinase	-	no_errors	EEF2K	HGNC	ENSG00000103319				302	0	0	170	72	29.7521
DNASE1L2	0	genome.wustl.edu	37	16	2287970	2287970	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	16	2287970	2287970	C	T	SNP	DNASE1L2	ENST00000320700	human	ensembl	74_37	+1	known	missense	c.794	p.S265L	0.215	pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase,smart_DNase_I,pirsf_DNase_I,prints_DNase_I	pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase,smart_DNase_I,pirsf_DNase_I,prints_DNase_I	-	no_errors	DNASE1L2	HGNC	ENSG00000167968				29	0	0	10	6	37.5
RBBP6	0	genome.wustl.edu	37	16	24580095	24580095	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	16	24580095	24580095	A	G	SNP	RBBP6	ENST00000319715	human	ensembl	74_37	+1	known	missense	c.2084	p.Y695C	1.000	NULL	pfam_DWNN_domain,pfam_Ubox_domain,pfam_Znf_CCHC,superfamily_Znf_CCHC,smart_Znf_CCHC,smart_Znf_RING,pfscan_Znf_RING,pfscan_Znf_CCHC	-	no_errors	RBBP6	HGNC	ENSG00000122257				136	0	0	55	20	26.6667
KDM8	0	genome.wustl.edu	37	16	27226316	27226316	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	16	27226316	27226316	A	G	SNP	KDM8	ENST00000441782	human	ensembl	74_37	+1	known	missense	c.899	p.Y300C	0.999	NULL	pfam_JmjC_dom,smart_JmjC_dom,pfscan_JmjC_dom	-	no_errors	KDM8	HGNC	ENSG00000155666				127	1	0.78125	80	5	5.88235
IL4R	0	genome.wustl.edu	37	16	27374927	27374927	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	16	27374927	27374927	T	C	SNP	IL4R	ENST00000170630	human	ensembl	74_37	+1	known	missense	c.2254	p.S752P	0.000	NULL	pfam_IL-4_rcpt-alpha_N,superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	IL4R	HGNC	ENSG00000077238				106	1	0.934579	45	18	28.5714
GTF3C1	0	genome.wustl.edu	37	16	27473658	27473658	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	16	27473658	27473658	T	C	SNP	GTF3C1	ENST00000356183	human	ensembl	74_37	-1	known	missense	c.6074	p.Y2025C	1.000	NULL	pfam_TFIIIC_Bblock-bd	-	no_errors	GTF3C1	HGNC	ENSG00000077235				17	0	0	6	3	33.3333
GTF3C1	0	genome.wustl.edu	37	16	27475947	27475947	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	16	27475947	27475947	T	C	SNP	GTF3C1	ENST00000356183	human	ensembl	74_37	-1	known	missense	c.5566	p.S1856G	0.001	NULL	pfam_TFIIIC_Bblock-bd	-	no_errors	GTF3C1	HGNC	ENSG00000077235				204	0	0	115	14	10.8527
GTF3C1	0	genome.wustl.edu	37	16	27499707	27499707	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	16	27499707	27499707	C	T	SNP	GTF3C1	ENST00000356183	human	ensembl	74_37	-1	known	missense	c.3541	p.A1181T	0.002	NULL	pfam_TFIIIC_Bblock-bd	-	no_errors	GTF3C1	HGNC	ENSG00000077235				383	0	0	184	88	32.3529
KIAA0556	0	genome.wustl.edu	37	16	27629755	27629755	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	16	27629755	27629755	A	G	SNP	KIAA0556	ENST00000261588	human	ensembl	74_37	+1	known	missense	c.73	p.K25E	1.000	NULL	superfamily_Thaumatin	-	no_errors	KIAA0556	HGNC	ENSG00000047578				125	0	0	100	9	8.25688
GSG1L	0	genome.wustl.edu	37	16	27818823	27818823	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	16	27818823	27818823	C	T	SNP	GSG1L	ENST00000447459	human	ensembl	74_37	-1	known	missense	c.883	p.E295K	0.961	NULL	pfam_GSG-1,pfam_PMP22/EMP/MP20/Claudin	-	no_errors	GSG1L	HGNC	ENSG00000169181				31	0	0	19	6	24
SULT1A1	0	genome.wustl.edu	37	16	28619888	28619888	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	16	28619888	28619888	T	C	SNP	SULT1A1	ENST00000314752	human	ensembl	74_37	-1	known	missense	c.185	p.Y62C	0.903	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase	-	no_errors	SULT1A1	HGNC	ENSG00000196502				86	0	0	49	11	18.3333
SPNS1	0	genome.wustl.edu	37	16	28995116	28995116	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	16	28995116	28995116	C	T	SNP	SPNS1	ENST00000311008	human	ensembl	74_37	+1	known	missense	c.1330	p.R444C	1.000	superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SPNS1	HGNC	ENSG00000169682				232	0	0	122	32	20.7792
FLYWCH1	0	genome.wustl.edu	37	16	2979777	2979777	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	16	2979777	2979777	G	A	SNP	FLYWCH1	ENST00000399667	human	ensembl	74_37	+1	known	missense	c.91	p.A31T	0.003	NULL	pfam_Znf_FLYWCH	-	no_errors	FLYWCH1	HGNC	ENSG00000059122				84	0	0	44	12	21.4286
MAZ	0	genome.wustl.edu	37	16	29819116	29819116	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	16	29819116	29819116	A	G	SNP	MAZ	ENST00000219782	human	ensembl	74_37	+1	known	missense	c.1010	p.Y337C	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	MAZ	HGNC	ENSG00000103495				90	0	0	81	6	6.89655
SEZ6L2	0	genome.wustl.edu	37	16	29910333	29910333	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	16	29910333	29910333	G	A	SNP	SEZ6L2	ENST00000308713	human	ensembl	74_37	-1	known	missense	c.8	p.T3I	1.000	NULL	pfam_Sushi_SCR_CCP,pfam_CUB_dom,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_CUB_dom,smart_Sushi_SCR_CCP,pfscan_CUB_dom,pfscan_Sushi_SCR_CCP	-	no_errors	SEZ6L2	HGNC	ENSG00000174938				41	0	0	13	12	48
TAOK2	0	genome.wustl.edu	37	16	29999030	29999030	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	16	29999030	29999030	T	C	SNP	TAOK2	ENST00000308893	human	ensembl	74_37	+1	known	missense	c.3437	p.L1146P	0.002	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	TAOK2	HGNC	ENSG00000149930				192	1	0.518135	104	16	13.3333
HIRIP3	0	genome.wustl.edu	37	16	30004857	30004857	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	16	30004857	30004857	C	T	SNP	HIRIP3	ENST00000279392	human	ensembl	74_37	-1	known	missense	c.1430	p.C477Y	1.000	NULL	pfam_Histone_chaperone_domain_CHZ	-	no_errors	HIRIP3	HGNC	ENSG00000149929				144	0	0	94	6	6
INO80E	0	genome.wustl.edu	37	16	30012832	30012832	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	16	30012832	30012832	G	A	SNP	INO80E	ENST00000563197	human	ensembl	74_37	+1	known	missense	c.494	p.R165H	1.000	NULL	NULL	-	no_errors	INO80E	HGNC	ENSG00000169592				41	0	0	26	10	27.7778
DOC2A	0	genome.wustl.edu	37	16	30018259	30018259	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	16	30018259	30018259	G	A	SNP	DOC2A	ENST00000350119	human	ensembl	74_37	-1	known	missense	c.725	p.A242V	0.230	pirsf_Doc2	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pirsf_Doc2,prints_Synaptotagmin,prints_C2_dom,pfscan_C2_dom	-	no_errors	DOC2A	HGNC	ENSG00000149927				51	0	0	24	12	33.3333
PPP4C	0	genome.wustl.edu	37	16	30096053	30096053	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	16	30096053	30096053	A	G	SNP	PPP4C	ENST00000279387	human	ensembl	74_37	+1	known	missense	c.671	p.Q224R	1.000	pfam_PEstase_dom,smart_Ser/Thr-sp_prot-phosphatase	pfam_PEstase_dom,smart_Ser/Thr-sp_prot-phosphatase,prints_Ser/Thr-sp_prot-phosphatase	-	no_errors	PPP4C	HGNC	ENSG00000149923				276	0	0	142	64	31.068
ZNF646	0	genome.wustl.edu	37	16	31091576	31091576	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	16	31091576	31091576	G	A	SNP	ZNF646	ENST00000300850	human	ensembl	74_37	+1	known	missense	c.3931	p.A1311T	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF646	HGNC	ENSG00000167395				52	0	0	31	20	39.2157
BCKDK	0	genome.wustl.edu	37	16	31122443	31122443	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	16	31122443	31122443	C	T	SNP	BCKDK	ENST00000219794	human	ensembl	74_37	+1	known	missense	c.748	p.P250S	1.000	superfamily_HATPase_ATP-bd	pfam_BCDHK/PDK_N,pfam_HATPase_ATP-bd,superfamily_BCDHK/PDK_N,superfamily_HATPase_ATP-bd,smart_HATPase_ATP-bd,pfscan_Sig_transdc_His_kinase_core,prints_Sig_transdc_His_kin-like_C	-	no_errors	BCKDK	HGNC	ENSG00000103507				135	0	0	63	26	29.2135
PYCARD	0	genome.wustl.edu	37	16	31213142	31213142	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	16	31213142	31213142	G	T	SNP	PYCARD	ENST00000247470	human	ensembl	74_37	-1	known	missense	c.352	p.H118N	0.937	pfam_CARD,superfamily_DEATH-like_dom,pfscan_CARD	pfam_CARD,pfam_DAPIN,superfamily_DEATH-like_dom,pfscan_CARD,pfscan_DAPIN	-	no_errors	PYCARD	HGNC	ENSG00000103490				104	1	0.952381	55	23	29.4872
DNASE1	0	genome.wustl.edu	37	16	3707217	3707217	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	16	3707217	3707217	G	A	SNP	DNASE1	ENST00000246949	human	ensembl	74_37	+1	known	silent	c.579	p.A193	0.003	pirsf_DNase_I,pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase,smart_DNase_I,prints_DNase_I	pirsf_DNase_I,pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase,smart_DNase_I,prints_DNase_I	-	no_errors	DNASE1	HGNC	ENSG00000213918				192	0	0	91	46	33.5766
TRAP1	0	genome.wustl.edu	37	16	3721726	3721726	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	16	3721726	3721726	A	T	SNP	TRAP1	ENST00000246957	human	ensembl	74_37	-1	known	missense	c.1232	p.I411N	1.000	pfam_Hsp90_fam,superfamily_Ribosomal_S5_D2-typ_fold,pirsf_Hsp90_fam	pfam_Hsp90_fam,pfam_HATPase_ATP-bd,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_HATPase_ATP-bd,smart_HATPase_ATP-bd,pirsf_Hsp90_fam,prints_Hsp90_N	-	no_errors	TRAP1	HGNC	ENSG00000126602				52	0	0	32	3	8.57143
CREBBP	0	genome.wustl.edu	37	16	3820608	3820608	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	16	3820608	3820608	T	C	SNP	CREBBP	ENST00000262367	human	ensembl	74_37	-1	known	missense	c.2843	p.Q948R	1.000	NULL	pfam_Histone_H3-K56_AcTrfase_RTT109,pfam_Nuc_rcpt_coact_CREBbp,pfam_KIX_dom,pfam_DUF902_CREBbp,pfam_Znf_TAZ,pfam_Bromodomain,pfam_Znf_ZZ,superfamily_Bromodomain,superfamily_Znf_TAZ,superfamily_KIX_dom,superfamily_Nuc_rcpt_coact,superfamily_Znf_FYVE_PHD,smart_Znf_TAZ,smart_Bromodomain,smart_Znf_ZZ,pfscan_KIX_dom,pfscan_Znf_TAZ,pfscan_Znf_ZZ,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	CREBBP	HGNC	ENSG00000005339				448	1	0.222717	242	83	25.5385
MRPL28	0	genome.wustl.edu	37	16	418359	418359	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	16	418359	418359	G	A	SNP	MRPL28	ENST00000199706	human	ensembl	74_37	-1	known	missense	c.632	p.A211V	1.000	NULL	NULL	-	no_errors	MRPL28	HGNC	ENSG00000086504				224	1	0.444444	85	52	37.9562
TFAP4	0	genome.wustl.edu	37	16	4312644	4312644	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	16	4312644	4312644	G	A	SNP	TFAP4	ENST00000204517	human	ensembl	74_37	-1	known	missense	c.148	p.R50W	0.622	pfam_bHLH_dom,superfamily_bHLH_dom,pfscan_bHLH_dom	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	TFAP4	HGNC	ENSG00000090447				170	0	0	80	48	37.5
CORO7-PAM16	0	genome.wustl.edu	37	16	4411442	4411442	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	16	4411442	4411442	G	A	SNP	CORO7-PAM16	ENST00000572467	human	ensembl	74_37	-1	known	missense	c.1607	p.T536M	0.945	smart_WD40_repeat	pfam_DUF1900,pfam_WD40_repeat,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	CORO7-PAM16	HGNC	ENSG00000103426				131	0	0	68	31	31.3131
ABCC12	0	genome.wustl.edu	37	16	48173146	48173146	+	Silent	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	16	48173146	48173146	C	T	SNP	ABCC12	ENST00000311303	human	ensembl	74_37	-1	known	silent	c.759	p.A253	0.070	pfam_ABC_transptr_TM_dom,superfamily_ABC1_TM_dom,pfscan_ABC1_TM_dom	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_P-loop_NTPase,superfamily_ABC1_TM_dom,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom	-	no_errors	ABCC12	HGNC	ENSG00000140798				191	0	0	72	47	39.4958
ABCC11	0	genome.wustl.edu	37	16	48250029	48250029	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	16	48250029	48250029	A	C	SNP	ABCC11	ENST00000356608	human	ensembl	74_37	-1	known	missense	c.947	p.L316R	0.829	pfam_ABC_transptr_TM_dom,superfamily_ABC1_TM_dom,pfscan_ABC1_TM_dom	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_P-loop_NTPase,superfamily_ABC1_TM_dom,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom	-	no_errors	ABCC11	HGNC	ENSG00000121270				277	2	0.716846	114	52	31.3253
GLYR1	0	genome.wustl.edu	37	16	4895126	4895126	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	16	4895126	4895126	T	C	SNP	GLYR1	ENST00000321919	human	ensembl	74_37	-1	known	missense	c.104	p.K35R	1.000	pfam_PWWP_dom,smart_PWWP_dom,pfscan_PWWP_dom	pfam_6PGDH_NADP-bd,pfam_PWWP_dom,superfamily_6-PGluconate_DH_C-like,smart_PWWP_dom,pfscan_PWWP_dom	-	no_errors	GLYR1	HGNC	ENSG00000140632				274	0	0	198	16	7.47664
PPL	0	genome.wustl.edu	37	16	4933690	4933690	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	16	4933690	4933690	G	A	SNP	PPL	ENST00000345988	human	ensembl	74_37	-1	known	missense	c.4966	p.R1656C	1.000	smart_Plectin_repeat	pfam_Plectin_repeat,smart_Spectrin/alpha-actinin,smart_Plectin_repeat	-	no_errors	PPL	HGNC	ENSG00000118898				88	0	0	61	21	25.6098
PPL	0	genome.wustl.edu	37	16	4940785	4940785	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	16	4940785	4940785	G	A	SNP	PPL	ENST00000345988	human	ensembl	74_37	-1	known	silent	c.2106	p.A702	0.002	NULL	pfam_Plectin_repeat,smart_Spectrin/alpha-actinin,smart_Plectin_repeat	-	no_errors	PPL	HGNC	ENSG00000118898				30	0	0	10	9	47.3684
NOD2	0	genome.wustl.edu	37	16	50733415	50733415	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	16	50733415	50733415	G	A	SNP	NOD2	ENST00000300589	human	ensembl	74_37	+1	known	silent	c.90	p.S30	0.002	pfscan_CARD	pfam_CARD,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_CARD	-	no_errors	NOD2	HGNC	ENSG00000167207				510	1	0.195695	225	115	33.8235
CHD9	0	genome.wustl.edu	37	16	53358048	53358048	+	Silent	SNP	A	A	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	16	53358048	53358048	A	T	SNP	CHD9	ENST00000398510	human	ensembl	74_37	+1	known	silent	c.7935	p.A2645	0.097	NULL	pfam_SNF2_N,pfam_BRK_domain,pfam_Chromo_domain,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,smart_BRK_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD9	HGNC	ENSG00000177200				280	0	0	118	39	24.8408
RPGRIP1L	0	genome.wustl.edu	37	16	53639350	53639350	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	16	53639350	53639350	G	A	SNP	RPGRIP1L	ENST00000564374	human	ensembl	74_37	-1	putative	missense	c.3740	p.A1247V	0.003	NULL	pfam_DUF3250,pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	-	no_errors	RPGRIP1L	HGNC	ENSG00000103494				117	0	0	68	4	5.55556
LPCAT2	0	genome.wustl.edu	37	16	55562369	55562369	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	16	55562369	55562369	A	C	SNP	LPCAT2	ENST00000262134	human	ensembl	74_37	+1	known	missense	c.392	p.K131T	0.548	pfam_Plipid/glycerol_acylTrfase	pfam_EF_hand_dom,pfam_Plipid/glycerol_acylTrfase,smart_Plipid/glycerol_acylTrfase,smart_EF_hand_dom,pfscan_EF_hand_dom,prints_Recoverin	-	no_errors	LPCAT2	HGNC	ENSG00000087253				174	0	0	85	46	35.1145
SLC6A2	0	genome.wustl.edu	37	16	55705925	55705925	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	16	55705925	55705925	A	T	SNP	SLC6A2	ENST00000219833	human	ensembl	74_37	+1	known	missense	c.482	p.Y161F	1.000	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport,prints_Na/ntran_symport_noradrenaline	-	no_errors	SLC6A2	HGNC	ENSG00000103546				104	0	0	40	17	29.8246
AMFR	0	genome.wustl.edu	37	16	56437005	56437005	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	16	56437005	56437005	A	G	SNP	AMFR	ENST00000290649	human	ensembl	74_37	-1	known	missense	c.866	p.M289T	1.000	NULL	pfam_CUE,pfam_Znf_C3HC4_RING-type,smart_Znf_RING,smart_CUE,pfscan_CUE,pfscan_Znf_RING	-	no_errors	AMFR	HGNC	ENSG00000159461				150	0	0	123	18	12.766
BBS2	0	genome.wustl.edu	37	16	56545131	56545131	+	Silent	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	16	56545131	56545131	A	G	SNP	BBS2	ENST00000245157	human	ensembl	74_37	-1	known	silent	c.411	p.I137	1.000	superfamily_WD40_repeat_dom,pirsf_Bardet-Biedl_syndrome_2_prot	superfamily_WD40_repeat_dom,pirsf_Bardet-Biedl_syndrome_2_prot	-	no_errors	BBS2	HGNC	ENSG00000125124				228	0	0	151	20	11.6959
HERPUD1	0	genome.wustl.edu	37	16	56975935	56975935	+	RNA	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	16	56975935	56975935	A	G	SNP	HERPUD1	ENST00000568814	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	HERPUD1	HGNC	ENSG00000051108				60	0	0	32	8	20
CX3CL1	0	genome.wustl.edu	37	16	57416777	57416777	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	16	57416777	57416777	G	A	SNP	CX3CL1	ENST00000006053	human	ensembl	74_37	+1	known	missense	c.1027	p.V343M	0.876	prints_Chemokine_CX3CL1	pfam_Chemokine_IL8-like_dom,superfamily_Chemokine_IL8-like_dom,smart_Chemokine_IL8-like_dom,prints_Chemokine_CX3CL1	-	no_errors	CX3CL1	HGNC	ENSG00000006210				133	0	0	58	28	32.5581
KATNB1	0	genome.wustl.edu	37	16	57778313	57778313	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	16	57778313	57778313	C	T	SNP	KATNB1	ENST00000379661	human	ensembl	74_37	+1	known	missense	c.179	p.T60M	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	KATNB1	HGNC	ENSG00000140854				97	0	0	31	15	32.6087
KATNB1	0	genome.wustl.edu	37	16	57785608	57785608	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	16	57785608	57785608	C	T	SNP	KATNB1	ENST00000379661	human	ensembl	74_37	+1	known	missense	c.488	p.A163V	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	KATNB1	HGNC	ENSG00000140854				120	0	0	62	27	30.3371
MMP15	0	genome.wustl.edu	37	16	58072273	58072273	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	16	58072273	58072273	T	C	SNP	MMP15	ENST00000219271	human	ensembl	74_37	+1	known	missense	c.415	p.W139R	1.000	pirsf_Pept_M10A_Metazoans,pfam_Pept_M10_metallopeptidase,smart_Peptidase_Metallo	pirsf_Pept_M10A_Metazoans,pfam_Hemopexin-like_repeat,pfam_Pept_M10_metallopeptidase,pfam_Pept_M10A_metallopeptidase_C,pfam_Peptidoglycan-bd-like,superfamily_Hemopexin-like_dom,superfamily_Peptidoglycan-bd-like,smart_Peptidase_Metallo,smart_Hemopexin-like_repeat,prints_Pept_M10A	-	no_errors	MMP15	HGNC	ENSG00000102996				194	1	0.512821	123	17	12.1429
CAPN15	0	genome.wustl.edu	37	16	597238	597238	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	16	597238	597238	C	G	SNP	CAPN15	ENST00000219611	human	ensembl	74_37	+1	known	missense	c.400	p.Q134E	0.031	NULL	pfam_Peptidase_C2_calpain_cat,pfam_Znf_RanBP2,smart_Znf_RanBP2,smart_Peptidase_C2_calpain_cat,pfscan_Znf_RanBP2,pfscan_Peptidase_C2_calpain_cat,prints_Calpain_cysteine_protease	-	no_errors	CAPN15	HGNC	ENSG00000103326				14	0	0	5	2	28.5714
CAPN15	0	genome.wustl.edu	37	16	601649	601649	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	16	601649	601649	A	G	SNP	CAPN15	ENST00000219611	human	ensembl	74_37	+1	known	missense	c.2330	p.Y777C	1.000	pfam_Peptidase_C2_calpain_cat,smart_Peptidase_C2_calpain_cat,pfscan_Peptidase_C2_calpain_cat,prints_Calpain_cysteine_protease	pfam_Peptidase_C2_calpain_cat,pfam_Znf_RanBP2,smart_Znf_RanBP2,smart_Peptidase_C2_calpain_cat,pfscan_Znf_RanBP2,pfscan_Peptidase_C2_calpain_cat,prints_Calpain_cysteine_protease	-	no_errors	CAPN15	HGNC	ENSG00000103326				92	0	0	58	6	9.375
RRAD	0	genome.wustl.edu	37	16	66957424	66957424	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	16	66957424	66957424	A	G	SNP	RRAD	ENST00000299759	human	ensembl	74_37	-1	known	missense	c.644	p.V215A	1.000	pfam_Small_GTPase,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,pirsf_Small_GTPase_GEM/REM/Rad,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,pirsf_Small_GTPase_GEM/REM/Rad,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RRAD	HGNC	ENSG00000166592				175	0	0	105	6	5.40541
CES2	0	genome.wustl.edu	37	16	66974153	66974153	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	16	66974153	66974153	T	C	SNP	CES2	ENST00000317091	human	ensembl	74_37	+1	known	missense	c.644	p.L215P	0.064	pfam_CarbesteraseB,pfam_AB_hydrolase_3	pfam_CarbesteraseB,pfam_AB_hydrolase_3	-	no_errors	CES2	HGNC	ENSG00000172831				134	0	0	90	9	9.09091
CBFB	0	genome.wustl.edu	37	16	67100670	67100670	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	16	67100670	67100670	G	A	SNP	CBFB	ENST00000290858	human	ensembl	74_37	+1	known	missense	c.368	p.G123D	1.000	pfam_CBF_beta,superfamily_CBF_beta	pfam_CBF_beta,superfamily_CBF_beta	-	no_errors	CBFB	HGNC	ENSG00000067955				87	0	0	75	18	19.3548
PLEKHG4	0	genome.wustl.edu	37	16	67320812	67320812	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	16	67320812	67320812	G	A	SNP	PLEKHG4	ENST00000360461	human	ensembl	74_37	+1	known	missense	c.2915	p.R972H	1.000	smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_DH-domain,superfamily_DH-domain,superfamily_CRAL-TRIO_dom,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PLEKHG4	HGNC	ENSG00000196155				220	0	0	118	48	28.9157
FAM65A	0	genome.wustl.edu	37	16	67576357	67576357	+	Silent	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	16	67576357	67576357	T	C	SNP	FAM65A	ENST00000422602	human	ensembl	74_37	+1	known	silent	c.1728	p.I576	0.000	NULL	superfamily_ARM-type_fold,superfamily_HR1_rho-bd	-	no_errors	FAM65A	HGNC	ENSG00000039523				990	0	0	795	58	6.79953
TSNAXIP1	0	genome.wustl.edu	37	16	67861174	67861174	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	16	67861174	67861174	C	A	SNP	TSNAXIP1	ENST00000388833	human	ensembl	74_37	+1	known	missense	c.1525	p.P509T	1.000	NULL	NULL	-	no_errors	TSNAXIP1	HGNC	ENSG00000102904				90	0	0	50	19	27.5362
EDC4	0	genome.wustl.edu	37	16	67914024	67914024	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	16	67914024	67914024	A	G	SNP	EDC4	ENST00000358933	human	ensembl	74_37	+1	known	missense	c.2002	p.S668G	1.000	NULL	superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	EDC4	HGNC	ENSG00000038358				68	0	0	29	15	34.0909
PSKH1	0	genome.wustl.edu	37	16	67942930	67942930	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	16	67942930	67942930	G	A	SNP	PSKH1	ENST00000291041	human	ensembl	74_37	+1	known	missense	c.278	p.R93H	1.000	superfamily_Kinase-like_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	PSKH1	HGNC	ENSG00000159792				69	0	0	37	26	41.2698
DUS2	0	genome.wustl.edu	37	16	68100478	68100478	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	16	68100478	68100478	A	G	SNP	DUS2	ENST00000358896	human	ensembl	74_37	+1	known	missense	c.493	p.T165A	1.000	pfam_tRNA_hU_synthase	pfam_tRNA_hU_synthase,pfam_dsRNA-bd_dom,smart_dsRNA-bd_dom	-	no_errors	DUS2	HGNC	ENSG00000167264				458	0	0	339	37	9.84043
SLC7A6OS	0	genome.wustl.edu	37	16	68337993	68337993	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	16	68337993	68337993	G	A	SNP	SLC7A6OS	ENST00000263997	human	ensembl	74_37	-1	known	missense	c.614	p.T205M	0.327	NULL	NULL	-	no_errors	SLC7A6OS	HGNC	ENSG00000103061				181	0	0	79	58	42.3358
NFAT5	0	genome.wustl.edu	37	16	69725814	69725814	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	16	69725814	69725814	A	G	SNP	NFAT5	ENST00000432919	human	ensembl	74_37	+1	known	missense	c.2086	p.I696V	1.000	NULL	pfam_RHD,superfamily_p53-like_TF_DNA-bd,superfamily_Ig_E-set,smart_IPT,pfscan_RHD,prints_NFAT	-	no_errors	NFAT5	HGNC	ENSG00000102908				165	1	0.60241	109	11	9.16667
DDX19B	0	genome.wustl.edu	37	16	70359507	70359507	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	16	70359507	70359507	G	A	SNP	DDX19B	ENST00000288071	human	ensembl	74_37	+1	known	missense	c.523	p.A175T	0.985	pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX19B	HGNC	ENSG00000157349				197	0	0	121	8	6.20155
ST3GAL2	0	genome.wustl.edu	37	16	70422372	70422372	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	16	70422372	70422372	C	A	SNP	ST3GAL2	ENST00000342907	human	ensembl	74_37	-1	known	missense	c.611	p.S204I	1.000	pfam_Glyco_trans_29,pirsf_Sialyl_trans	pfam_Glyco_trans_29,pirsf_Sialyl_trans	-	no_errors	ST3GAL2	HGNC	ENSG00000157350				297	2	0.668896	157	65	29.2793
PHLPP2	0	genome.wustl.edu	37	16	71678722	71678722	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	16	71678722	71678722	G	A	SNP	PHLPP2	ENST00000360429	human	ensembl	74_37	-1	known	missense	c.2854	p.P952S	0.000	NULL	pfam_Leu-rich_rpt,pfam_PP2C-like_dom,superfamily_PP2C-like_dom,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	PHLPP2	HGNC	ENSG00000040199				43	0	0	21	7	25
TXNL4B	0	genome.wustl.edu	37	16	72122889	72122889	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	16	72122889	72122889	T	C	SNP	TXNL4B	ENST00000268483	human	ensembl	74_37	-1	known	missense	c.281	p.Y94C	1.000	pfam_mRNA_splic_U5,pfam_Thioredoxin_domain,superfamily_Thioredoxin-like_fold,pirsf_mRNA_splic_U5	pfam_mRNA_splic_U5,pfam_Thioredoxin_domain,superfamily_Thioredoxin-like_fold,pirsf_mRNA_splic_U5	-	no_errors	TXNL4B	HGNC	ENSG00000140830				229	0	0	113	43	27.5641
ZFHX3	0	genome.wustl.edu	37	16	72829354	72829354	+	Silent	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	16	72829354	72829354	A	G	SNP	ZFHX3	ENST00000268489	human	ensembl	74_37	-1	known	silent	c.7227	p.L2409	0.701	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Znf_C2H2-like,smart_Znf_U1,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	ZFHX3	HGNC	ENSG00000140836				230	2	0.862069	87	43	33.0769
RBFOX1	0	genome.wustl.edu	37	16	7383041	7383041	+	Silent	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	16	7383041	7383041	C	T	SNP	RBFOX1	ENST00000311745	human	ensembl	74_37	+1	known	silent	c.39	p.G13	0.998	NULL	pfam_Fox-1_C_dom,pfam_RRM_dom,smart_RRM_dom,pirsf_RNA-bd_Fox-1,pfscan_RRM_dom	-	no_errors	RBFOX1	HGNC	ENSG00000078328				247	0	0	125	43	25.5952
WDR24	0	genome.wustl.edu	37	16	739346	739346	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	16	739346	739346	C	T	SNP	WDR24	ENST00000248142	human	ensembl	74_37	-1	known	missense	c.481	p.V161M	1.000	superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR24	HGNC	ENSG00000127580				51	0	0	37	6	13.9535
PSMD7	0	genome.wustl.edu	37	16	74330861	74330861	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	16	74330861	74330861	C	T	SNP	PSMD7	ENST00000219313	human	ensembl	74_37	+1	known	missense	c.49	p.L17F	1.000	pfam_JAB_MPN_dom,smart_JAB_MPN_dom	pfam_JAB_MPN_dom,smart_JAB_MPN_dom	-	no_errors	PSMD7	HGNC	ENSG00000103035				65	0	0	27	4	12.9032
FA2H	0	genome.wustl.edu	37	16	74753037	74753037	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	16	74753037	74753037	T	A	SNP	FA2H	ENST00000219368	human	ensembl	74_37	-1	known	missense	c.635	p.K212M	0.886	pirsf_Ino-phos-ceramide-B_Hydrxlase	pfam_Fatty_acid_hydroxylase,pfam_Cyt_B5-like_heme/steroid-bd,superfamily_Cyt_B5-like_heme/steroid-bd,pirsf_Ino-phos-ceramide-B_Hydrxlase,pfscan_Cyt_B5-like_heme/steroid-bd,prints_Cyt_B5-like_heme/steroid-bd	-	no_errors	FA2H	HGNC	ENSG00000103089				98	0	0	54	7	11.4754
CNTNAP4	0	genome.wustl.edu	37	16	76481946	76481946	+	Silent	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	16	76481946	76481946	T	C	SNP	CNTNAP4	ENST00000307431	human	ensembl	74_37	+1	known	silent	c.573	p.L191	0.990	superfamily_ConA-like_lec_gl_sf,pfscan_Laminin_G	pfam_Laminin_G,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,superfamily_ConA-like_lec_gl_sf,superfamily_Fibrinogen_a/b/g_C_dom,smart_Coagulation_fac_5/8-C_type_dom,smart_Laminin_G,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_Laminin_G	-	no_errors	CNTNAP4	HGNC	ENSG00000152910				114	0	0	47	23	32.8571
CNTNAP4	0	genome.wustl.edu	37	16	76573730	76573730	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	16	76573730	76573730	A	C	SNP	CNTNAP4	ENST00000307431	human	ensembl	74_37	+1	known	missense	c.3332	p.E1111A	0.917	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,superfamily_ConA-like_lec_gl_sf,superfamily_Fibrinogen_a/b/g_C_dom,smart_Coagulation_fac_5/8-C_type_dom,smart_Laminin_G,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_Laminin_G	-	no_errors	CNTNAP4	HGNC	ENSG00000152910				155	0	0	90	28	23.7288
MAF	0	genome.wustl.edu	37	16	79632969	79632969	+	Silent	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	16	79632969	79632969	C	T	SNP	MAF	ENST00000326043	human	ensembl	74_37	-1	known	silent	c.831	p.Q277	1.000	pfam_bZIP_Maf,superfamily_TF_DNA-bd	pfam_bZIP_Maf,pfam_Maf_TF_N,superfamily_TF_DNA-bd,smart_bZIP,pfscan_bZIP	-	no_errors	MAF	HGNC	ENSG00000178573				29	0	0	21	5	19.2308
MAF	0	genome.wustl.edu	37	16	79633642	79633642	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	16	79633642	79633642	C	T	SNP	MAF	ENST00000326043	human	ensembl	74_37	-1	known	missense	c.158	p.G53D	1.000	NULL	pfam_bZIP_Maf,pfam_Maf_TF_N,superfamily_TF_DNA-bd,smart_bZIP,pfscan_bZIP	-	no_errors	MAF	HGNC	ENSG00000178573				65	0	0	25	15	37.5
ATMIN	0	genome.wustl.edu	37	16	81078385	81078385	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	16	81078385	81078385	A	G	SNP	ATMIN	ENST00000299575	human	ensembl	74_37	+1	known	missense	c.2282	p.N761S	0.998	NULL	smart_Znf_C2H2-like	-	no_errors	ATMIN	HGNC	ENSG00000166454				149	0	0	125	7	5.30303
PKD1L2	0	genome.wustl.edu	37	16	81209311	81209311	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	16	81209311	81209311	A	G	SNP	PKD1L2	ENST00000337114	human	ensembl	74_37	-1	known	missense	c.2482	p.Y828H	1.000	pfam_PKD/REJ-like,superfamily_Coatomer/clathrin_app_Ig-like,pfscan_REJ-like	pfam_Lectin_gal-bd_dom,pfam_C-type_lectin,pfam_PKD/REJ-like,superfamily_C-type_lectin_fold,superfamily_Coatomer/clathrin_app_Ig-like,superfamily_PKD_dom,smart_C-type_lectin,pfscan_C-type_lectin,pfscan_Lectin_gal-bd_dom,pfscan_REJ-like	-	no_errors	PKD1L2	HGNC	ENSG00000166473				137	0	0	83	29	25.8929
BCMO1	0	genome.wustl.edu	37	16	81293316	81293316	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	16	81293316	81293316	G	A	SNP	BCMO1	ENST00000258168	human	ensembl	74_37	+1	known	missense	c.229	p.D77N	1.000	pfam_Carotenoid_Oase	pfam_Carotenoid_Oase	-	no_errors	BCMO1	HGNC	ENSG00000135697				154	0	0	79	41	34.1667
TAF1C	0	genome.wustl.edu	37	16	84218572	84218572	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	16	84218572	84218572	C	T	SNP	TAF1C	ENST00000378541	human	ensembl	74_37	-1	known	missense	c.23	p.R8H	0.031	NULL	superfamily_WD40_repeat_dom	-	no_errors	TAF1C	HGNC	ENSG00000103168				61	0	0	26	10	27.7778
ADAD2	0	genome.wustl.edu	37	16	84224941	84224941	+	Silent	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	16	84224941	84224941	A	G	SNP	ADAD2	ENST00000268624	human	ensembl	74_37	+1	known	silent	c.105	p.L35	0.000	NULL	pfam_A_deamin,pfam_dsRNA-bd_dom,smart_A_deamin,pfscan_dsRNA-bd_dom,pfscan_A_deamin	-	no_errors	ADAD2	HGNC	ENSG00000140955				42	0	0	23	4	14.8148
CHTF18	0	genome.wustl.edu	37	16	843186	843186	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	16	843186	843186	G	A	SNP	CHTF18	ENST00000317063	human	ensembl	74_37	+1	known	missense	c.2284	p.V762M	0.998	superfamily_P-loop_NTPase	pfam_ATPase_AAA_core,pfam_ATPase_dyneun-rel_AAA,pfam_DNA_helicase_Holl-junc_RuvB_N,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	CHTF18	HGNC	ENSG00000127586				26	0	0	9	12	57.1429
KLHL36	0	genome.wustl.edu	37	16	84695605	84695605	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	16	84695605	84695605	G	A	SNP	KLHL36	ENST00000564996	human	ensembl	74_37	+1	known	missense	c.1717	p.D573N	0.058	pfam_Kelch_1,smart_Kelch_1,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL36	HGNC	ENSG00000135686				24	0	0	2	3	60
CHTF18	0	genome.wustl.edu	37	16	847005	847005	+	Silent	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	16	847005	847005	T	C	SNP	CHTF18	ENST00000317063	human	ensembl	74_37	+1	known	silent	c.3273	p.I1091	0.015	NULL	pfam_ATPase_AAA_core,pfam_ATPase_dyneun-rel_AAA,pfam_DNA_helicase_Holl-junc_RuvB_N,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	CHTF18	HGNC	ENSG00000127586				216	0	0	142	11	7.18954
USP10	0	genome.wustl.edu	37	16	84778357	84778357	+	Silent	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	16	84778357	84778357	T	C	SNP	USP10	ENST00000570191	human	ensembl	74_37	+1	known	silent	c.282	p.F94	1.000	pfam_Ataxin-2_C	pfam_Peptidase_C19/C67,pfam_Ataxin-2_C,pfscan_Peptidase_C19/C67	-	no_errors	USP10	HGNC	ENSG00000103194				167	0	0	108	28	20.5882
GSE1	0	genome.wustl.edu	37	16	85667621	85667621	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	16	85667621	85667621	G	A	SNP	GSE1	ENST00000253458	human	ensembl	74_37	+1	known	missense	c.109	p.A37T	1.000	NULL	pfam_GSE-like	-	no_errors	GSE1	HGNC	ENSG00000131149				102	0	0	58	18	23.6842
GSE1	0	genome.wustl.edu	37	16	85696670	85696670	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	16	85696670	85696670	C	T	SNP	GSE1	ENST00000253458	human	ensembl	74_37	+1	known	missense	c.2344	p.P782S	1.000	pfam_GSE-like	pfam_GSE-like	-	no_errors	GSE1	HGNC	ENSG00000131149				101	0	0	42	29	40.8451
GSE1	0	genome.wustl.edu	37	16	85701751	85701751	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	16	85701751	85701751	G	A	SNP	GSE1	ENST00000253458	human	ensembl	74_37	+1	known	missense	c.3136	p.V1046M	0.000	NULL	pfam_GSE-like	-	no_errors	GSE1	HGNC	ENSG00000131149				348	0	0	181	78	30.1158
FOXL1	0	genome.wustl.edu	37	16	86612389	86612389	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	16	86612389	86612389	G	A	SNP	FOXL1	ENST00000320241	human	ensembl	74_37	+1	known	silent	c.60	p.L20	1.000	NULL	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXL1	HGNC	ENSG00000176678				142	0	0	62	38	38
JPH3	0	genome.wustl.edu	37	16	87723329	87723329	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	16	87723329	87723329	C	T	SNP	JPH3	ENST00000284262	human	ensembl	74_37	+1	known	nonsense	c.1363	p.Q455*	1.000	pirsf_Junctophilin	pirsf_Junctophilin,pfam_MORN,smart_MORN	-	no_errors	JPH3	HGNC	ENSG00000154118				43	0	0	34	12	26.087
BANP	0	genome.wustl.edu	37	16	88066729	88066729	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	16	88066729	88066729	A	G	SNP	BANP	ENST00000286122	human	ensembl	74_37	+1	known	missense	c.1054	p.T352A	0.996	NULL	pfam_BEN_domain	-	no_errors	BANP	HGNC	ENSG00000172530				38	0	0	32	4	11.1111
ACSF3	0	genome.wustl.edu	37	16	89167401	89167401	+	Silent	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	16	89167401	89167401	C	T	SNP	ACSF3	ENST00000317447	human	ensembl	74_37	+1	known	silent	c.312	p.N104	0.491	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig	-	no_errors	ACSF3	HGNC	ENSG00000176715				195	0	0	125	27	17.7632
ANKRD11	0	genome.wustl.edu	37	16	89347285	89347285	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	16	89347285	89347285	T	C	SNP	ANKRD11	ENST00000301030	human	ensembl	74_37	-1	known	missense	c.5665	p.K1889E	1.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD11	HGNC	ENSG00000167522				145	0	0	65	38	36.8932
MYH4	0	genome.wustl.edu	37	17	10366715	10366715	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	17	10366715	10366715	T	C	SNP	MYH4	ENST00000255381	human	ensembl	74_37	-1	known	missense	c.745	p.K249E	1.000	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom,prints_Myosin_head_motor_dom	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,superfamily_tRNA-bd_arm,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH4	HGNC	ENSG00000264424				139	0	0	65	9	12.1622
DNAH9	0	genome.wustl.edu	37	17	11656204	11656204	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	17	11656204	11656204	A	G	SNP	DNAH9	ENST00000262442	human	ensembl	74_37	+1	known	missense	c.6665	p.K2222R	1.000	pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH9	HGNC	ENSG00000007174				140	0	0	91	23	20.1754
ELAC2	0	genome.wustl.edu	37	17	12909071	12909071	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	17	12909071	12909071	T	C	SNP	ELAC2	ENST00000338034	human	ensembl	74_37	-1	known	missense	c.869	p.E290G	1.000	NULL	pfam_Beta-lactamas-like	-	no_errors	ELAC2	HGNC	ENSG00000006744				141	0	0	74	31	29.5238
MYO1C	0	genome.wustl.edu	37	17	1386228	1386228	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	17	1386228	1386228	G	A	SNP	MYO1C	ENST00000359786	human	ensembl	74_37	-1	known	missense	c.473	p.A158V	1.000	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom,prints_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Myosin_tail_2,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO1C	HGNC	ENSG00000197879				40	0	0	14	5	26.3158
TRPV2	0	genome.wustl.edu	37	17	16338211	16338211	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	17	16338211	16338211	G	A	SNP	TRPV2	ENST00000338560	human	ensembl	74_37	+1	known	missense	c.2122	p.E708K	1.000	prints_TRPV1-4_channel,tigrfam_TRP_channel	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_TRPV1-4_channel,tigrfam_TRP_channel	-	no_errors	TRPV2	HGNC	ENSG00000187688				154	0	0	65	25	27.7778
C17orf76-AS1	0	genome.wustl.edu	37	17	16342734	16342734	+	RNA	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	17	16342734	16342734	T	C	SNP	C17orf76-AS1	ENST00000480811	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	C17orf76-AS1	HGNC	ENSG00000175061				233	0	0	113	66	36.8715
ZNF287	0	genome.wustl.edu	37	17	16455634	16455634	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	17	16455634	16455634	T	C	SNP	ZNF287	ENST00000395824	human	ensembl	74_37	-1	known	missense	c.1822	p.T608A	0.112	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Tscrpt_reg_SCAN,pfam_Krueppel-associated_box,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF287	HGNC	ENSG00000141040				177	0	0	99	15	13.1579
SERPINF2	0	genome.wustl.edu	37	17	1650779	1650779	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	17	1650779	1650779	C	T	SNP	SERPINF2	ENST00000324015	human	ensembl	74_37	+1	known	missense	c.688	p.L230F	1.000	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	-	no_errors	SERPINF2	HGNC	ENSG00000167711				44	0	0	24	9	27.2727
MPRIP	0	genome.wustl.edu	37	17	17046081	17046081	+	Splice_Site	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	17	17046081	17046081	T	C	SNP	MPRIP	ENST00000395811	human	ensembl	74_37	+1	known	splice_site	c.1035+2	e8+2	1.000	-	-	-	no_errors	MPRIP	HGNC	ENSG00000133030				118	1	0.840336	76	4	5
RAI1	0	genome.wustl.edu	37	17	17698099	17698099	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	17	17698099	17698099	G	T	SNP	RAI1	ENST00000353383	human	ensembl	74_37	+1	known	missense	c.1837	p.G613W	1.000	NULL	smart_Znf_PHD	-	no_errors	RAI1	HGNC	ENSG00000108557				135	0	0	59	32	35.1648
RAI1	0	genome.wustl.edu	37	17	17700169	17700169	+	Nonsense_Mutation	SNP	A	A	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	17	17700169	17700169	A	T	SNP	RAI1	ENST00000353383	human	ensembl	74_37	+1	known	nonsense	c.3907	p.K1303*	0.674	NULL	smart_Znf_PHD	-	no_errors	RAI1	HGNC	ENSG00000108557				309	0	0	182	18	9
RAI1	0	genome.wustl.edu	37	17	17700292	17700292	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	17	17700292	17700292	T	A	SNP	RAI1	ENST00000353383	human	ensembl	74_37	+1	known	missense	c.4030	p.F1344I	0.996	NULL	smart_Znf_PHD	-	no_errors	RAI1	HGNC	ENSG00000108557				252	0	0	151	14	8.48485
EPN2	0	genome.wustl.edu	37	17	19186549	19186549	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	17	19186549	19186549	G	A	SNP	EPN2	ENST00000314728	human	ensembl	74_37	+1	known	silent	c.117	p.L39	1.000	pfam_Epsin_dom_N,pfam_ANTH_dom,superfamily_ENTH_VHS,smart_Epsin-like_N,pfscan_Epsin-like_N	pfam_Epsin_dom_N,pfam_ANTH_dom,superfamily_ENTH_VHS,smart_Epsin-like_N,smart_Ubiquitin-int_motif,pfscan_Epsin-like_N,pfscan_Ubiquitin-int_motif	-	no_errors	EPN2	HGNC	ENSG00000072134				178	0	0	84	36	30
MAPK7	0	genome.wustl.edu	37	17	19284780	19284780	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	17	19284780	19284780	C	T	SNP	MAPK7	ENST00000308406	human	ensembl	74_37	+1	known	missense	c.1258	p.P420S	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	MAPK7	HGNC	ENSG00000166484				119	0	0	53	28	34.5679
ALDH3A2	0	genome.wustl.edu	37	17	19555013	19555013	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	17	19555013	19555013	G	T	SNP	ALDH3A2	ENST00000339618	human	ensembl	74_37	+1	known	nonsense	c.307	p.G103*	1.000	pfam_Aldehyde_DH_dom,pfam_Acyl-CoA_reduct_LuxC,superfamily_Ald_DH/histidinol_DH,pirsf_Aldehyde_DH_NAD(P)	pfam_Aldehyde_DH_dom,pfam_Acyl-CoA_reduct_LuxC,superfamily_Ald_DH/histidinol_DH,pirsf_Aldehyde_DH_NAD(P)	-	no_errors	ALDH3A2	HGNC	ENSG00000072210				279	1	0.357143	144	66	31.4286
ALDH3A2	0	genome.wustl.edu	37	17	19559709	19559709	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	17	19559709	19559709	G	A	SNP	ALDH3A2	ENST00000339618	human	ensembl	74_37	+1	known	missense	c.502	p.E168K	0.000	pfam_Aldehyde_DH_dom,pfam_Acyl-CoA_reduct_LuxC,superfamily_Ald_DH/histidinol_DH,pirsf_Aldehyde_DH_NAD(P)	pfam_Aldehyde_DH_dom,pfam_Acyl-CoA_reduct_LuxC,superfamily_Ald_DH/histidinol_DH,pirsf_Aldehyde_DH_NAD(P)	-	no_errors	ALDH3A2	HGNC	ENSG00000072210				127	0	0	93	7	7
CCDC144NL	0	genome.wustl.edu	37	17	20799282	20799282	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	17	20799282	20799282	G	C	SNP	CCDC144NL	ENST00000327925	human	ensembl	74_37	-1	known	missense	c.52	p.P18A	0.000	NULL	NULL	-	no_errors	CCDC144NL	HGNC	ENSG00000205212				62	0	0	24	8	25
USP22	0	genome.wustl.edu	37	17	20921306	20921306	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	17	20921306	20921306	C	T	SNP	USP22	ENST00000261497	human	ensembl	74_37	-1	known	missense	c.639	p.M213I	1.000	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	pfam_Peptidase_C19/C67,pfam_Znf_UBP,pfscan_Znf_UBP,pfscan_Peptidase_C19/C67	-	no_errors	USP22	HGNC	ENSG00000124422				217	0	0	145	12	7.64331
METTL16	0	genome.wustl.edu	37	17	2324091	2324091	+	Silent	SNP	G	G	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	17	2324091	2324091	G	C	SNP	METTL16	ENST00000263092	human	ensembl	74_37	-1	known	silent	c.996	p.R332	0.241	pirsf_S-AdoMet-dep_MeTrfase_Mett10D	pfam_rRNA_lsu_MeTfrase_F-like,pirsf_S-AdoMet-dep_MeTrfase_Mett10D	-	no_errors	METTL16	HGNC	ENSG00000127804				508	0	0	288	151	34.3964
KSR1	0	genome.wustl.edu	37	17	25919448	25919448	+	Silent	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	17	25919448	25919448	C	T	SNP	KSR1	ENST00000319524	human	ensembl	74_37	+1	known	silent	c.1192	p.L398	0.737	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	KSR1	HGNC	ENSG00000141068				349	1	0.285714	180	68	27.4194
CLUH	0	genome.wustl.edu	37	17	2595724	2595724	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	17	2595724	2595724	C	T	SNP	CLUH	ENST00000435359	human	ensembl	74_37	-1	known	missense	c.3374	p.R1125H	1.000	NULL	superfamily_GSKIP_dom	-	no_errors	CLUH	HGNC	ENSG00000132361				55	0	0	23	9	28.125
CLUH	0	genome.wustl.edu	37	17	2606624	2606624	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	17	2606624	2606624	G	A	SNP	CLUH	ENST00000435359	human	ensembl	74_37	-1	known	missense	c.349	p.R117C	0.970	NULL	superfamily_GSKIP_dom	-	no_errors	CLUH	HGNC	ENSG00000132361				28	0	0	19	3	13.6364
KIAA0100	0	genome.wustl.edu	37	17	26960389	26960389	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	17	26960389	26960389	A	C	SNP	KIAA0100	ENST00000528896	human	ensembl	74_37	-1	known	missense	c.3496	p.W1166G	1.000	NULL	pfam_FMP27_C,pfam_FMP27_N,pfam_FMP27_GFWDK_dom	-	no_errors	KIAA0100	HGNC	ENSG00000007202				199	2	0.995025	102	53	34.1935
KIAA0100	0	genome.wustl.edu	37	17	26964956	26964956	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	17	26964956	26964956	C	T	SNP	KIAA0100	ENST00000528896	human	ensembl	74_37	-1	known	missense	c.1669	p.A557T	0.053	pfam_FMP27_N	pfam_FMP27_C,pfam_FMP27_N,pfam_FMP27_GFWDK_dom	-	no_errors	KIAA0100	HGNC	ENSG00000007202				87	0	0	54	6	10
PIPOX	0	genome.wustl.edu	37	17	27380576	27380576	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	17	27380576	27380576	A	G	SNP	PIPOX	ENST00000323372	human	ensembl	74_37	+1	known	missense	c.623	p.Q208R	0.000	pfam_FAD-dep_OxRdtase,tigrfam_SoxA_mon	pfam_FAD-dep_OxRdtase,tigrfam_SoxA_mon	-	no_errors	PIPOX	HGNC	ENSG00000179761				178	0	0	130	9	6.47482
MYO18A	0	genome.wustl.edu	37	17	27420384	27420384	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	17	27420384	27420384	T	G	SNP	MYO18A	ENST00000354329	human	ensembl	74_37	-1	known	missense	c.4883	p.E1628A	1.000	pfam_Myosin_tail	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_PDZ,superfamily_P-loop_NTPase,superfamily_PDZ,superfamily_Regulat_G_prot_signal_superfam,smart_PDZ,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,pfscan_PDZ,pfscan_RecA_monomer-monomer_interface,prints_Myosin_head_motor_dom	-	no_errors	MYO18A	HGNC	ENSG00000196535				42	0	0	16	16	50
MYO18A	0	genome.wustl.edu	37	17	27437032	27437032	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	17	27437032	27437032	G	A	SNP	MYO18A	ENST00000354329	human	ensembl	74_37	-1	known	missense	c.3175	p.R1059C	0.999	superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_PDZ,superfamily_P-loop_NTPase,superfamily_PDZ,superfamily_Regulat_G_prot_signal_superfam,smart_PDZ,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,pfscan_PDZ,pfscan_RecA_monomer-monomer_interface,prints_Myosin_head_motor_dom	-	no_errors	MYO18A	HGNC	ENSG00000196535				37	0	0	11	7	38.8889
MYO18A	0	genome.wustl.edu	37	17	27447649	27447649	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	17	27447649	27447649	G	A	SNP	MYO18A	ENST00000354329	human	ensembl	74_37	-1	known	silent	c.1713	p.A571	1.000	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom,pfscan_RecA_monomer-monomer_interface	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_PDZ,superfamily_P-loop_NTPase,superfamily_PDZ,superfamily_Regulat_G_prot_signal_superfam,smart_PDZ,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,pfscan_PDZ,pfscan_RecA_monomer-monomer_interface,prints_Myosin_head_motor_dom	-	no_errors	MYO18A	HGNC	ENSG00000196535				60	0	0	27	14	34.1463
SLC6A4	0	genome.wustl.edu	37	17	28530221	28530221	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	17	28530221	28530221	C	T	SNP	SLC6A4	ENST00000261707	human	ensembl	74_37	-1	known	missense	c.1787	p.R596Q	1.000	pfam_Na/ntran_symport,pfscan_Na/ntran_symport	pfam_Na/ntran_symport,pfam_Na/ntran_symport_serotonin_N,pfscan_Na/ntran_symport,prints_Na/ntran_symport,prints_Na/ntran_symport_serotonin_N	-	no_errors	SLC6A4	HGNC	ENSG00000108576				273	1	0.364964	172	10	5.49451
NF1	0	genome.wustl.edu	37	17	29587399	29587399	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	17	29587399	29587399	T	A	SNP	NF1	ENST00000358273	human	ensembl	74_37	+1	known	missense	c.4443	p.D1481E	1.000	superfamily_Rho_GTPase_activation_prot,superfamily_ARM-type_fold,smart_RasGAP	pfam_RasGAP,superfamily_Rho_GTPase_activation_prot,superfamily_ARM-type_fold,superfamily_CRAL-TRIO_dom,smart_RasGAP,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom,pfscan_RasGAP	-	no_errors	NF1	HGNC	ENSG00000196712				213	0	0	109	55	33.5366
UTP6	0	genome.wustl.edu	37	17	30202317	30202317	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	17	30202317	30202317	A	G	SNP	UTP6	ENST00000261708	human	ensembl	74_37	-1	known	missense	c.1241	p.I414T	0.975	NULL	pfam_U3_snoRNA_assoc-6,smart_HAT	-	no_errors	UTP6	HGNC	ENSG00000108651				155	0	0	110	7	5.98291
ASIC2	0	genome.wustl.edu	37	17	31618577	31618577	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	17	31618577	31618577	C	T	SNP	ASIC2	ENST00000225823	human	ensembl	74_37	-1	known	missense	c.557	p.R186H	1.000	pfam_Na+channel_ASC,tigrfam_EnaC	pfam_Na+channel_ASC,prints_Na+channel_ASC,tigrfam_EnaC	-	no_errors	ASIC2	HGNC	ENSG00000108684				51	0	0	29	10	25.641
CCT6B	0	genome.wustl.edu	37	17	33266705	33266705	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	17	33266705	33266705	G	A	SNP	CCT6B	ENST00000314144	human	ensembl	74_37	-1	known	silent	c.996	p.A332	1.000	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1,superfamily_GroEL-like_apical_dom,tigrfam_Chap_CCT_zeta	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1,superfamily_GroEL-like_apical_dom,prints_Chaperone_TCP-1,prints_Chaprnin_Cpn60,tigrfam_Chap_CCT_zeta	-	no_errors	CCT6B	HGNC	ENSG00000132141				126	0	0	68	28	29.1667
SLFN12	0	genome.wustl.edu	37	17	33747357	33747357	+	Silent	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	17	33747357	33747357	C	T	SNP	SLFN12	ENST00000304905	human	ensembl	74_37	-1	known	silent	c.1083	p.T361	0.000	NULL	pfam_ATPase_AAA-4	-	no_errors	SLFN12	HGNC	ENSG00000172123				121	0	0	62	27	30.3371
AP2B1	0	genome.wustl.edu	37	17	33998825	33998825	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	17	33998825	33998825	C	A	SNP	AP2B1	ENST00000312678	human	ensembl	74_37	+1	known	missense	c.2084	p.P695H	0.988	pirsf_AP_complex_bsu_1_2_4	pfam_Clathrin/coatomer_adapt-like_N,pfam_B-adaptin_app_sub_C,pfam_HEAT,pfam_Clathrin_a/b/g-adaptin_app_Ig,superfamily_ARM-type_fold,superfamily_Coatomer/calthrin_app_sub_C,superfamily_Coatomer/clathrin_app_Ig-like,smart_Armadillo,smart_Clathrin_a/b/g-adaptin_app_Ig,pirsf_AP_complex_bsu_1_2_4	-	no_errors	AP2B1	HGNC	ENSG00000006125				452	0	0	245	102	29.3948
RASL10B	0	genome.wustl.edu	37	17	34062412	34062412	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	17	34062412	34062412	C	T	SNP	RASL10B	ENST00000268864	human	ensembl	74_37	+1	known	missense	c.209	p.T70M	0.960	pfam_Small_GTPase,pfam_MIRO-like,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type	pfam_Small_GTPase,pfam_MIRO-like,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,prints_Small_GTPase	-	no_errors	RASL10B	HGNC	ENSG00000141150				78	0	0	54	20	27.027
GAS2L2	0	genome.wustl.edu	37	17	34072896	34072896	+	Silent	SNP	G	G	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	17	34072896	34072896	G	T	SNP	GAS2L2	ENST00000254466	human	ensembl	74_37	-1	known	silent	c.1620	p.A540	0.025	NULL	pfam_GAS2_dom,pfam_CH-domain,superfamily_CH-domain,superfamily_GAS2_dom,smart_CH-domain,smart_GAS2_dom,pfscan_CH-domain	-	no_errors	GAS2L2	HGNC	ENSG00000132139				139	1	0.714286	71	18	20.2247
MYO19	0	genome.wustl.edu	37	17	34862384	34862384	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	17	34862384	34862384	G	A	SNP	MYO19	ENST00000431794	human	ensembl	74_37	-1	known	silent	c.1708	p.L570	0.601	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO19	HGNC	ENSG00000141140				210	1	0.473934	103	58	36.0248
LHX1	0	genome.wustl.edu	37	17	35300172	35300172	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	17	35300172	35300172	C	T	SNP	LHX1	ENST00000254457	human	ensembl	74_37	+1	known	missense	c.965	p.T322M	0.929	NULL	pfam_Znf_LIM,pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Znf_LIM,smart_Homeobox_dom,pfscan_Znf_LIM,pfscan_Homeobox_dom	-	no_errors	LHX1	HGNC	ENSG00000132130				19	0	0	10	5	33.3333
LHX1	0	genome.wustl.edu	37	17	35300261	35300261	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	17	35300261	35300261	G	A	SNP	LHX1	ENST00000254457	human	ensembl	74_37	+1	known	missense	c.1054	p.G352R	0.996	NULL	pfam_Znf_LIM,pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Znf_LIM,smart_Homeobox_dom,pfscan_Znf_LIM,pfscan_Homeobox_dom	-	no_errors	LHX1	HGNC	ENSG00000132130				44	0	0	14	8	36.3636
ACACA	0	genome.wustl.edu	37	17	35627644	35627644	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	17	35627644	35627644	G	C	SNP	ACACA	ENST00000353139	human	ensembl	74_37	-1	known	missense	c.1117	p.Q373E	1.000	pfam_CbamoylP_synth_lsu-like_ATP-bd,pfam_Dala_Dala_lig_C,pfam_ATP-grasp_carboxylate-amine,pfscan_ATP-grasp,pfscan_Biotin_carboxylation_dom	pfam_AcCoA_COase_cen,pfam_Carboxyl_trans,pfam_CbamoylP_synth_lsu-like_ATP-bd,pfam_CarbamoylP_synth_lsu_N,pfam_Biotin_COase_C,pfam_Biotin_lipoyl,pfam_Dala_Dala_lig_C,pfam_ATP-grasp_carboxylate-amine,superfamily_PreATP-grasp_dom,superfamily_Rudment_hybrid_motif,superfamily_Single_hybrid_motif,smart_Biotin_COase_C,pfscan_ATP-grasp,pfscan_Biotin_carboxylation_dom,pfscan_COA_CT_N,pfscan_COA_CT_C,pfscan_Biotin_lipoyl	-	no_errors	ACACA	HGNC	ENSG00000132142				349	0	0	265	14	5.01792
TADA2A	0	genome.wustl.edu	37	17	35830566	35830566	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	17	35830566	35830566	C	T	SNP	TADA2A	ENST00000225396	human	ensembl	74_37	+1	known	missense	c.958	p.L320F	1.000	pirsf_Transcriptional_adaptor_2	pfam_SWIRM,pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pirsf_Transcriptional_adaptor_2,pfscan_SWIRM,pfscan_Myb-like_dom	-	no_errors	TADA2A	HGNC	ENSG00000108264				239	0	0	159	14	8.09249
P2RX5	0	genome.wustl.edu	37	17	3594321	3594321	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	17	3594321	3594321	C	T	SNP	P2RX5	ENST00000435558	human	ensembl	74_37	-1	known	missense	c.289	p.G97R	1.000	pfam_P2X_purnocptor,tigrfam_P2X_purnocptor	pfam_P2X_purnocptor,prints_P2X_purnocptor,prints_P2X5_purnocptor,tigrfam_P2X_purnocptor	-	no_errors	P2RX5	HGNC	ENSG00000083454				34	0	0	13	3	18.75
GPR179	0	genome.wustl.edu	37	17	36485249	36485249	+	Silent	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	17	36485249	36485249	A	G	SNP	GPR179	ENST00000342292	human	ensembl	74_37	-1	known	silent	c.4203	p.D1401	0.000	NULL	pfam_GPCR_3_C,superfamily_Growth_fac_rcpt_N_dom,pfscan_GPCR_3_C	-	no_errors	GPR179	HGNC	ENSG00000188888				347	0	0	235	18	7.11462
CWC25	0	genome.wustl.edu	37	17	36971185	36971185	+	Silent	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	17	36971185	36971185	A	G	SNP	CWC25	ENST00000225428	human	ensembl	74_37	-1	known	silent	c.357	p.F119	1.000	pfam_CWC25	pfam_CWC25,pfam_CIR_N_dom	-	no_errors	CWC25	HGNC	ENSG00000108296				133	1	0.746269	75	30	28.5714
FBXO47	0	genome.wustl.edu	37	17	37101363	37101363	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	17	37101363	37101363	T	C	SNP	FBXO47	ENST00000378079	human	ensembl	74_37	-1	known	missense	c.643	p.I215V	0.998	NULL	pfam_F-box_dom,superfamily_F-box_dom,pfscan_F-box_dom	-	no_errors	FBXO47	HGNC	ENSG00000204952				141	0	0	64	39	37.8641
LRRC37A11P	0	genome.wustl.edu	37	17	37187149	37187149	+	RNA	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	17	37187149	37187149	T	C	SNP	LRRC37A11P	ENST00000425901	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	LRRC37A11P	HGNC	ENSG00000214553				20	0	0	7	6	46.1538
CACNB1	0	genome.wustl.edu	37	17	37333585	37333585	+	Silent	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	17	37333585	37333585	C	T	SNP	CACNB1	ENST00000344140	human	ensembl	74_37	-1	known	silent	c.1485	p.S495	0.999	NULL	pfam_GK/Ca_channel_bsu,pfam_VDCC_L_bsu,superfamily_P-loop_NTPase,superfamily_SH3_domain,smart_GK/Ca_channel_bsu,pfscan_SH3_domain,prints_VDCC_L_bsu,prints_VDCC_L_b1su	-	no_errors	CACNB1	HGNC	ENSG00000067191				33	0	0	19	6	24
MED1	0	genome.wustl.edu	37	17	37564724	37564724	+	Silent	SNP	T	T	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	17	37564724	37564724	T	A	SNP	MED1	ENST00000300651	human	ensembl	74_37	-1	known	silent	c.3750	p.G1250	1.000	NULL	pfam_Mediator_Med1_met/fun	-	no_errors	MED1	HGNC	ENSG00000125686				170	0	0	78	28	26.4151
CAMKK1	0	genome.wustl.edu	37	17	3776731	3776731	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	17	3776731	3776731	A	G	SNP	CAMKK1	ENST00000381771	human	ensembl	74_37	-1	known	missense	c.1136	p.V379A	0.963	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	CAMKK1	HGNC	ENSG00000004660				354	0	0	246	15	5.74713
PGAP3	0	genome.wustl.edu	37	17	37829804	37829804	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	17	37829804	37829804	G	A	SNP	PGAP3	ENST00000300658	human	ensembl	74_37	-1	known	silent	c.657	p.F219	0.984	pfam_Per1	pfam_Per1	-	no_errors	PGAP3	HGNC	ENSG00000161395				241	0	0	119	59	33.1461
MED24	0	genome.wustl.edu	37	17	38191547	38191547	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	17	38191547	38191547	G	T	SNP	MED24	ENST00000394128	human	ensembl	74_37	-1	known	missense	c.382	p.L128I	1.000	pfam_Mediator_Med24_N	pfam_Mediator_Med24_N	-	no_errors	MED24	HGNC	ENSG00000008838				102	1	0.970874	18	19	51.3514
TNS4	0	genome.wustl.edu	37	17	38638399	38638399	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	17	38638399	38638399	G	A	SNP	TNS4	ENST00000254051	human	ensembl	74_37	-1	known	missense	c.1654	p.L552F	1.000	pfscan_SH2	pfam_PTB,pfam_SH2,smart_SH2,smart_PTB/PI_dom,pfscan_SH2	-	no_errors	TNS4	HGNC	ENSG00000131746				92	0	0	11	21	65.625
KRTAP9-8	0	genome.wustl.edu	37	17	39394370	39394370	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	17	39394370	39394370	A	G	SNP	KRTAP9-8	ENST00000254072	human	ensembl	74_37	+1	known	missense	c.67	p.T23A	0.003	NULL	NULL	-	no_errors	KRTAP9-8	HGNC	ENSG00000187272				128	0	0	40	39	49.3671
KRT36	0	genome.wustl.edu	37	17	39643624	39643624	+	Silent	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	17	39643624	39643624	C	T	SNP	KRT36	ENST00000328119	human	ensembl	74_37	-1	known	silent	c.966	p.E322	1.000	pfam_IF,superfamily_Prefoldin,prints_Keratin_I	pfam_IF,superfamily_Prefoldin,prints_Keratin_I	-	no_errors	KRT36	HGNC	ENSG00000126337				39	0	0	9	7	43.75
KRT13	0	genome.wustl.edu	37	17	39661316	39661316	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	17	39661316	39661316	G	A	SNP	KRT13	ENST00000246635	human	ensembl	74_37	-1	known	missense	c.487	p.R163W	0.988	pfam_IF	pfam_IF,superfamily_Prefoldin,prints_Keratin_I	-	no_errors	KRT13	HGNC	ENSG00000171401				78	0	0	26	21	44.6809
KRT16	0	genome.wustl.edu	37	17	39767667	39767667	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	17	39767667	39767667	C	T	SNP	KRT16	ENST00000301653	human	ensembl	74_37	-1	known	missense	c.701	p.R234K	0.989	pfam_IF,superfamily_Prefoldin,prints_Keratin_I	pfam_IF,superfamily_Prefoldin,prints_Keratin_I	-	no_errors	KRT16	HGNC	ENSG00000186832				181	0	0	52	76	59.375
ACLY	0	genome.wustl.edu	37	17	40068710	40068710	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	17	40068710	40068710	T	C	SNP	ACLY	ENST00000352035	human	ensembl	74_37	-1	known	missense	c.245	p.K82R	1.000	pfam_ATP-grasp_succ-CoA_synth-type,pirsf_ATP-citrate_synthase	pfam_Citrate_synthase-like,pfam_CoA_ligase,pfam_CoA-bd,pfam_ATP-grasp_succ-CoA_synth-type,superfamily_Citrate_synthase-like_core,superfamily_Succinyl-CoA_synth-like,smart_CoA-bd,pirsf_ATP-citrate_synthase	-	no_errors	ACLY	HGNC	ENSG00000131473				116	0	0	92	7	7.07071
KAT2A	0	genome.wustl.edu	37	17	40269927	40269927	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	17	40269927	40269927	G	A	SNP	KAT2A	ENST00000225916	human	ensembl	74_37	-1	known	missense	c.1289	p.P430L	1.000	pirsf_Hist_acetylase_PCAF	pirsf_Hist_acetylase_PCAF,pfam_PCAF_N,pfam_Bromodomain,pfam_GNAT_dom,superfamily_Bromodomain,superfamily_Acyl_CoA_acyltransferase,smart_Bromodomain,pfscan_Bromodomain,pfscan_GNAT_dom,prints_Bromodomain	-	no_errors	KAT2A	HGNC	ENSG00000108773				78	0	0	50	4	7.40741
PTRF	0	genome.wustl.edu	37	17	40557220	40557220	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	17	40557220	40557220	G	A	SNP	PTRF	ENST00000357037	human	ensembl	74_37	-1	known	missense	c.658	p.R220C	1.000	NULL	NULL	-	no_errors	PTRF	HGNC	ENSG00000177469				386	0	0	182	68	27.2
ANKFY1	0	genome.wustl.edu	37	17	4080582	4080582	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	17	4080582	4080582	G	A	SNP	ANKFY1	ENST00000570535	human	ensembl	74_37	-1	known	missense	c.2740	p.R914W	1.000	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_Znf_FYVE,pfam_BTB_POZ,superfamily_Ankyrin_rpt-contain_dom,superfamily_BTB/POZ_fold,superfamily_Znf_FYVE_PHD,smart_BTB/POZ-like,smart_Ankyrin_rpt,smart_Znf_FYVE,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_BTB/POZ-like,pfscan_Znf_FYVE-rel,prints_Ankyrin_rpt	-	no_errors	ANKFY1	HGNC	ENSG00000185722				175	0	0	97	51	34.4595
WNK4	0	genome.wustl.edu	37	17	40940731	40940731	+	Silent	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	17	40940731	40940731	C	T	SNP	WNK4	ENST00000246914	human	ensembl	74_37	+1	known	silent	c.2073	p.C691	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Kinase_OSR1/WNK_CCT,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	WNK4	HGNC	ENSG00000126562				145	1	0.684932	74	34	31.4815
WNK4	0	genome.wustl.edu	37	17	40945659	40945659	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	17	40945659	40945659	G	A	SNP	WNK4	ENST00000246914	human	ensembl	74_37	+1	known	missense	c.2207	p.R736Q	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Kinase_OSR1/WNK_CCT,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	WNK4	HGNC	ENSG00000126562				103	1	0.961538	52	19	26.7606
PSME3	0	genome.wustl.edu	37	17	40989706	40989706	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	17	40989706	40989706	C	T	SNP	PSME3	ENST00000293362	human	ensembl	74_37	+1	known	missense	c.284	p.A95V	1.000	superfamily_Proteasome_activ_pa28	pfam_Proteasome_activ_pa28_C,pfam_Proteasome_activ_pa28_N,superfamily_Proteasome_activ_pa28	-	no_errors	PSME3	HGNC	ENSG00000131467				185	0	0	118	41	25.7862
SOST	0	genome.wustl.edu	37	17	41832758	41832758	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	17	41832758	41832758	G	A	SNP	SOST	ENST00000301691	human	ensembl	74_37	-1	known	silent	c.594	p.R198	0.996	pfam_Sclerostin/SOSTDC1	pfam_Sclerostin/SOSTDC1,pfam_DAN,smart_Cys_knot_C	-	no_errors	SOST	HGNC	ENSG00000167941				99	0	0	41	19	31.6667
UBTF	0	genome.wustl.edu	37	17	42290225	42290225	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	17	42290225	42290225	T	C	SNP	UBTF	ENST00000302904	human	ensembl	74_37	-1	known	missense	c.622	p.T208A	1.000	pfam_HMG_box_dom,superfamily_HMG_box_dom,superfamily_ARM-type_fold,smart_HMG_box_dom,pfscan_HMG_box_dom	pfam_HMG_box_dom,superfamily_HMG_box_dom,superfamily_ARM-type_fold,smart_HMG_box_dom,pfscan_HMG_box_dom	-	no_errors	UBTF	HGNC	ENSG00000108312				361	1	0.276243	223	84	27.3616
GRN	0	genome.wustl.edu	37	17	42427679	42427679	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	17	42427679	42427679	G	T	SNP	GRN	ENST00000053867	human	ensembl	74_37	+1	known	missense	c.433	p.G145C	1.000	pfam_Granulin,smart_Granulin	pfam_Granulin,smart_Granulin	-	no_errors	GRN	HGNC	ENSG00000030582				331	3	0.898204	194	72	27.0677
C1QL1	0	genome.wustl.edu	37	17	43037611	43037611	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	17	43037611	43037611	C	T	SNP	C1QL1	ENST00000253407	human	ensembl	74_37	-1	known	missense	c.722	p.G241D	1.000	pfam_C1q,superfamily_Tumour_necrosis_fac-like_dom,smart_C1q,pfscan_C1q	pfam_C1q,pfam_Collagen,superfamily_Tumour_necrosis_fac-like_dom,smart_C1q,pfscan_C1q,prints_C1q	-	no_errors	C1QL1	HGNC	ENSG00000131094				212	0	0	100	55	35.4839
ACBD4	0	genome.wustl.edu	37	17	43220923	43220923	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	17	43220923	43220923	G	A	SNP	ACBD4	ENST00000431281	human	ensembl	74_37	+1	known	missense	c.941	p.G314E	0.933	NULL	pfam_Acyl-CoA-binding_protein,superfamily_Acyl-CoA-binding_protein,prints_Acyl-CoA-binding_protein	-	no_errors	ACBD4	HGNC	ENSG00000181513				151	0	0	92	7	7.07071
ENSG00000233175	0	genome.wustl.edu	37	17	43316444	43316444	+	RNA	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	17	43316444	43316444	A	G	SNP	ENSG00000233175	ENST00000587534	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	CTD-2020K17.3	Clone_based_vega_gene	ENSG00000233175				85	0	0	46	32	41.0256
PLEKHM1	0	genome.wustl.edu	37	17	43531503	43531503	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	17	43531503	43531503	G	A	SNP	PLEKHM1	ENST00000430334	human	ensembl	74_37	-1	known	missense	c.1715	p.T572I	0.998	smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_Run,superfamily_Znf_FYVE_PHD,smart_Run,smart_Pleckstrin_homology,smart_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Pleckstrin_homology,pfscan_Run,pfscan_Prot_Kinase_C-like_PE/DAG-bd	-	no_errors	PLEKHM1	HGNC	ENSG00000225190				103	0	0	37	28	43.0769
CRHR1	0	genome.wustl.edu	37	17	43861933	43861933	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	17	43861933	43861933	G	A	SNP	CRHR1	ENST00000398285	human	ensembl	74_37	+1	known	missense	c.23	p.R8H	0.615	NULL	pfam_GPCR_2_secretin-like,pfam_GPCR_2_extracellular_dom,smart_GPCR_2_extracellular_dom,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GPCR_2_CRF_rcpt,prints_GPCR_2_secretin-like,prints_GPCR_2_CRF1_rcpt,prints_GPCR_2_diuretic_rcpt	-	no_errors	CRHR1	HGNC	ENSG00000120088				9	0	0	2	3	60
MAPT	0	genome.wustl.edu	37	17	44060714	44060714	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	17	44060714	44060714	C	T	SNP	MAPT	ENST00000344290	human	ensembl	74_37	+1	known	missense	c.544	p.R182C	0.007	NULL	pfam_MAP_tubulin-bd_rpt,prints_Tau	-	no_errors	MAPT	HGNC	ENSG00000186868				29	0	0	13	3	18.75
MYBBP1A	0	genome.wustl.edu	37	17	4448930	4448930	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	17	4448930	4448930	G	A	SNP	MYBBP1A	ENST00000381556	human	ensembl	74_37	-1	known	missense	c.2048	p.P683L	0.000	pfam_DNA_pol_V,superfamily_ARM-type_fold	pfam_DNA_pol_V,superfamily_ARM-type_fold	-	no_errors	MYBBP1A	HGNC	ENSG00000132382				60	0	0	29	14	32.5581
TBX21	0	genome.wustl.edu	37	17	45822603	45822603	+	Silent	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	17	45822603	45822603	C	T	SNP	TBX21	ENST00000177694	human	ensembl	74_37	+1	known	silent	c.1479	p.G493	0.990	NULL	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box,prints_TF_T-box	-	no_errors	TBX21	HGNC	ENSG00000073861				88	0	0	44	14	24.1379
CXCL16	0	genome.wustl.edu	37	17	4638556	4638556	+	Silent	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	17	4638556	4638556	A	G	SNP	CXCL16	ENST00000293778	human	ensembl	74_37	-1	known	silent	c.606	p.P202	0.000	NULL	NULL	-	no_errors	CXCL16	HGNC	ENSG00000161921				56	0	0	26	16	38.0952
CXCL16	0	genome.wustl.edu	37	17	4638666	4638666	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	17	4638666	4638666	A	G	SNP	CXCL16	ENST00000293778	human	ensembl	74_37	-1	known	missense	c.496	p.S166P	0.001	NULL	NULL	-	no_errors	CXCL16	HGNC	ENSG00000161921				118	0	0	59	22	27.1605
HOXB13	0	genome.wustl.edu	37	17	46805653	46805653	+	Silent	SNP	G	G	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	17	46805653	46805653	G	T	SNP	HOXB13	ENST00000290295	human	ensembl	74_37	-1	known	silent	c.303	p.A101	1.000	pfam_HoxA13_N	pfam_HoxA13_N,pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	-	no_errors	HOXB13	HGNC	ENSG00000159184				249	0	0	112	50	30.8642
PLD2	0	genome.wustl.edu	37	17	4712400	4712400	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	17	4712400	4712400	C	T	SNP	PLD2	ENST00000263088	human	ensembl	74_37	+1	known	missense	c.389	p.A130V	0.973	pfam_Phox,superfamily_Phox,smart_Phox,pirsf_PLipase_D_euk,pfscan_Phox	pfam_Phox,pfam_PLipase_D/transphosphatidylase,superfamily_Phox,smart_Phox,smart_Pleckstrin_homology,smart_PLipase_D/transphosphatidylase,pirsf_PLipase_D_euk,pfscan_Phox,pfscan_PLipase_D/transphosphatidylase	-	no_errors	PLD2	HGNC	ENSG00000129219				309	0	0	170	54	24.1071
NGFR	0	genome.wustl.edu	37	17	47589350	47589350	+	Silent	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	17	47589350	47589350	C	T	SNP	NGFR	ENST00000172229	human	ensembl	74_37	+1	known	silent	c.918	p.G306	1.000	NULL	pfam_TNFR/NGFR_Cys_rich_reg,pfam_Death_domain,superfamily_DEATH-like_dom,smart_TNFR/NGFR_Cys_rich_reg,smart_Death_domain,pfscan_Death_domain,pfscan_TNFR/NGFR_Cys_rich_reg,prints_TNFR_16	-	no_errors	NGFR	HGNC	ENSG00000064300				46	0	0	28	5	15.1515
ITGA3	0	genome.wustl.edu	37	17	48145586	48145586	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	17	48145586	48145586	C	T	SNP	ITGA3	ENST00000320031	human	ensembl	74_37	+1	known	missense	c.581	p.T194M	0.996	NULL	pfam_Integrin_alpha-2,pfam_FG-GAP,smart_Int_alpha_beta-p,prints_Integrin_alpha	-	no_errors	ITGA3	HGNC	ENSG00000005884				204	0	0	98	47	32.4138
XYLT2	0	genome.wustl.edu	37	17	48434595	48434595	+	Silent	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	17	48434595	48434595	C	T	SNP	XYLT2	ENST00000017003	human	ensembl	74_37	+1	known	silent	c.1923	p.S641	1.000	pfam_XylT	pfam_XylT,pfam_Glyco_trans_14	-	no_errors	XYLT2	HGNC	ENSG00000015532				27	0	0	27	3	10
CACNA1G	0	genome.wustl.edu	37	17	48703770	48703770	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	17	48703770	48703770	G	A	SNP	CACNA1G	ENST00000359106	human	ensembl	74_37	+1	known	silent	c.6792	p.E2264	0.204	NULL	pfam_Ion_trans_dom,pfam_PKD1_2_channel,prints_VDCC_T_a1su,prints_VDCCAlpha1	-	no_errors	CACNA1G	HGNC	ENSG00000006283				22	0	0	17	6	26.087
CAMTA2	0	genome.wustl.edu	37	17	4873216	4873216	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	17	4873216	4873216	G	A	SNP	CAMTA2	ENST00000414043	human	ensembl	74_37	-1	known	missense	c.3239	p.T1080M	0.983	superfamily_P-loop_NTPase	pfam_CG-1_dom,pfam_IPT,pfam_IQ_motif_EF-hand-BS,superfamily_Ig_E-set,superfamily_Ankyrin_rpt-contain_dom,superfamily_P-loop_NTPase,pfscan_Ankyrin_rpt-contain_dom,pfscan_IQ_motif_EF-hand-BS	-	no_errors	CAMTA2	HGNC	ENSG00000108509				469	0	0	232	115	33.1412
USP6	0	genome.wustl.edu	37	17	5037186	5037186	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	17	5037186	5037186	T	C	SNP	USP6	ENST00000250066	human	ensembl	74_37	+1	known	missense	c.389	p.M130T	0.998	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	pfam_Peptidase_C19/C67,pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom,pfscan_Peptidase_C19/C67	-	no_errors	USP6	HGNC	ENSG00000129204				225	0	0	183	17	8.5
HLF	0	genome.wustl.edu	37	17	53398143	53398143	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	17	53398143	53398143	A	G	SNP	HLF	ENST00000226067	human	ensembl	74_37	+1	known	missense	c.791	p.N264S	1.000	pfam_bZIP,smart_bZIP,pfscan_bZIP	pfam_bZIP,smart_bZIP,pfscan_bZIP	-	no_errors	HLF	HGNC	ENSG00000108924				59	0	0	21	7	25
MMD	0	genome.wustl.edu	37	17	53491524	53491524	+	Silent	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	17	53491524	53491524	A	G	SNP	MMD	ENST00000262065	human	ensembl	74_37	-1	known	silent	c.96	p.C32	0.996	pfam_HlyIII-related,tigrfam_HylIII	pfam_HlyIII-related,tigrfam_HylIII	-	no_errors	MMD	HGNC	ENSG00000108960				106	0	0	54	30	35.7143
SCPEP1	0	genome.wustl.edu	37	17	55079432	55079432	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	17	55079432	55079432	C	A	SNP	SCPEP1	ENST00000262288	human	ensembl	74_37	+1	known	missense	c.1186	p.Q396K	0.103	pfam_Peptidase_S10	pfam_Peptidase_S10,prints_Peptidase_S10	-	no_errors	SCPEP1	HGNC	ENSG00000121064				218	0	0	123	45	26.7857
LPO	0	genome.wustl.edu	37	17	56326949	56326949	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	17	56326949	56326949	G	A	SNP	LPO	ENST00000262290	human	ensembl	74_37	+1	known	missense	c.466	p.A156T	0.400	pfam_Haem_peroxidase_animal,superfamily_Haem_peroxidase,pfscan_Haem_peroxidase_animal	pfam_Haem_peroxidase_animal,superfamily_Haem_peroxidase,pfscan_Haem_peroxidase_animal,prints_Haem_peroxidase_animal_subgr	-	no_errors	LPO	HGNC	ENSG00000167419				55	0	0	29	12	29.2683
USP32	0	genome.wustl.edu	37	17	58313509	58313509	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	17	58313509	58313509	T	C	SNP	USP32	ENST00000300896	human	ensembl	74_37	-1	known	missense	c.1229	p.Y410C	1.000	pfam_Pept_C19_DUSP,smart_Pept_C19_DUSP	pfam_Peptidase_C19/C67,pfam_Pept_C19_DUSP,smart_EF_hand_dom,smart_Pept_C19_DUSP,pfscan_EF_hand_dom,pfscan_Peptidase_C19/C67,prints_Recoverin	-	no_errors	USP32	HGNC	ENSG00000170832				267	0	0	171	21	10.9375
APPBP2	0	genome.wustl.edu	37	17	58538010	58538010	+	RNA	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	17	58538010	58538010	A	G	SNP	APPBP2	ENST00000592995	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.049	-	-	-	no_errors	APPBP2	HGNC	ENSG00000062725				95	0	0	52	18	25.7143
TBX4	0	genome.wustl.edu	37	17	59560871	59560871	+	Silent	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	17	59560871	59560871	C	T	SNP	TBX4	ENST00000393853	human	ensembl	74_37	+1	known	silent	c.1635	p.D545	0.944	NULL	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box,prints_TF_T-box	-	no_errors	TBX4	HGNC	ENSG00000121075				101	1	0.980392	56	21	27.2727
INTS2	0	genome.wustl.edu	37	17	59968953	59968953	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	17	59968953	59968953	G	A	SNP	INTS2	ENST00000444766	human	ensembl	74_37	-1	known	missense	c.1820	p.A607V	1.000	NULL	NULL	-	no_errors	INTS2	HGNC	ENSG00000108506				226	0	0	91	44	32.5926
MED13	0	genome.wustl.edu	37	17	60030383	60030383	+	Silent	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	17	60030383	60030383	A	G	SNP	MED13	ENST00000397786	human	ensembl	74_37	-1	known	silent	c.6060	p.T2020	0.999	pfam_Mediator_Med13	pfam_Mediator_Med13,pfam_Mediator_Med13_N_met/fun	-	no_errors	MED13	HGNC	ENSG00000108510				179	0	0	130	17	11.5646
MED13	0	genome.wustl.edu	37	17	60043998	60043998	+	Silent	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	17	60043998	60043998	A	G	SNP	MED13	ENST00000397786	human	ensembl	74_37	-1	known	silent	c.4206	p.G1402	0.978	NULL	pfam_Mediator_Med13,pfam_Mediator_Med13_N_met/fun	-	no_errors	MED13	HGNC	ENSG00000108510				52	0	0	28	16	36.3636
MED13	0	genome.wustl.edu	37	17	60072701	60072701	+	Silent	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	17	60072701	60072701	A	G	SNP	MED13	ENST00000397786	human	ensembl	74_37	-1	known	silent	c.1993	p.L665	1.000	NULL	pfam_Mediator_Med13,pfam_Mediator_Med13_N_met/fun	-	no_errors	MED13	HGNC	ENSG00000108510				157	1	0.632911	113	10	8.13008
TANC2	0	genome.wustl.edu	37	17	61466882	61466882	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	17	61466882	61466882	C	G	SNP	TANC2	ENST00000424789	human	ensembl	74_37	+1	known	missense	c.2806	p.L936V	1.000	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,superfamily_P-loop_NTPase,smart_Ankyrin_rpt,smart_TPR_repeat,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_TPR_repeat,pfscan_TPR-contain_dom,prints_Ankyrin_rpt	-	no_errors	TANC2	HGNC	ENSG00000170921				32	0	0	20	4	16.6667
GH1	0	genome.wustl.edu	37	17	61995762	61995762	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	17	61995762	61995762	C	T	SNP	GH1	ENST00000323322	human	ensembl	74_37	-1	known	missense	c.115	p.A39T	0.994	pfam_Somatotropin,superfamily_4_helix_cytokine-like_core	pfam_Somatotropin,superfamily_4_helix_cytokine-like_core,prints_Somatotropin	-	no_errors	GH1	HGNC	ENSG00000259384				486	1	0.205339	331	30	8.31025
SCN4A	0	genome.wustl.edu	37	17	62018681	62018681	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	17	62018681	62018681	G	A	SNP	SCN4A	ENST00000435607	human	ensembl	74_37	-1	known	missense	c.4961	p.A1654V	1.000	NULL	pfam_Ion_trans_dom,pfam_Na_trans_assoc,pfam_PKD1_2_channel,pfscan_IQ_motif_EF-hand-BS,prints_Na_channel_a4su,prints_Na_channel_asu,prints_PKD_2	-	no_errors	SCN4A	HGNC	ENSG00000007314				158	0	0	115	9	7.25806
LOC146880	0	genome.wustl.edu	37	17	62758775	62758775	+	RNA	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	17	62758775	62758775	T	C	SNP	LOC146880	ENST00000400873	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.993	-	-	-	no_errors	hsa-mir-6080	miRBase	ENSG00000215769				85	0	0	63	12	16
PLEKHM1P	0	genome.wustl.edu	37	17	62820804	62820804	+	RNA	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	17	62820804	62820804	C	T	SNP	PLEKHM1P	ENST00000397718	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.950	-	-	-	no_errors	PLEKHM1P	HGNC	ENSG00000214176				30	0	0	20	7	25.9259
PITPNM3	0	genome.wustl.edu	37	17	6387608	6387608	+	Silent	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	17	6387608	6387608	T	C	SNP	PITPNM3	ENST00000262483	human	ensembl	74_37	-1	known	silent	c.279	p.E93	0.943	NULL	pfam_DDHD,pfam_LNS2,superfamily_HAD-like_dom,smart_LNS2,pfscan_DDHD	-	no_errors	PITPNM3	HGNC	ENSG00000091622				251	0	0	135	52	27.8075
BPTF	0	genome.wustl.edu	37	17	65942395	65942395	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	17	65942395	65942395	A	G	SNP	BPTF	ENST00000321892	human	ensembl	74_37	+1	known	missense	c.7949	p.E2650G	1.000	NULL	pfam_Bromodomain,pfam_DDT_dom,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_DDT_dom_subgr,smart_Znf_PHD,smart_Bromodomain,pfscan_Znf_PHD-finger,pfscan_DDT_dom_superfamily,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BPTF	HGNC	ENSG00000171634				166	0	0	90	6	6.25
SLC13A5	0	genome.wustl.edu	37	17	6604366	6604366	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	17	6604366	6604366	G	A	SNP	SLC13A5	ENST00000433363	human	ensembl	74_37	-1	known	silent	c.796	p.L266	0.111	pfam_Na/sul_symport	pfam_Na/sul_symport,pfam_Cit_transptr-like_dom	-	no_errors	SLC13A5	HGNC	ENSG00000141485				90	0	0	50	4	7.40741
ABCA5	0	genome.wustl.edu	37	17	67287435	67287435	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	17	67287435	67287435	T	C	SNP	ABCA5	ENST00000392677	human	ensembl	74_37	-1	known	missense	c.1528	p.T510A	1.000	superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA5	HGNC	ENSG00000154265				115	0	0	64	14	17.9487
SOX9	0	genome.wustl.edu	37	17	70118922	70118922	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	17	70118922	70118922	A	G	SNP	SOX9	ENST00000245479	human	ensembl	74_37	+1	known	missense	c.494	p.H165R	1.000	pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	pfam_Sox_N,pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	-	no_errors	SOX9	HGNC	ENSG00000125398				93	0	0	20	20	50
COG1	0	genome.wustl.edu	37	17	71196745	71196745	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	17	71196745	71196745	A	G	SNP	COG1	ENST00000299886	human	ensembl	74_37	+1	known	missense	c.1111	p.M371V	0.000	NULL	NULL	-	no_errors	COG1	HGNC	ENSG00000166685				187	0	0	85	60	41.3793
SDK2	0	genome.wustl.edu	37	17	71384174	71384174	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	17	71384174	71384174	G	A	SNP	SDK2	ENST00000392650	human	ensembl	74_37	-1	known	missense	c.4195	p.R1399C	1.000	superfamily_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	SDK2	HGNC	ENSG00000069188				10	0	0	2	3	60
SLC2A4	0	genome.wustl.edu	37	17	7189239	7189239	+	Silent	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	17	7189239	7189239	C	T	SNP	SLC2A4	ENST00000571308	human	ensembl	74_37	+1	putative	silent	c.1338	p.P446	0.000	pfscan_MFS_dom	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,prints_Sugar/inositol_transpt,prints_Glc_transpt_4,tigrfam_Sugar/inositol_transpt	-	no_errors	SLC2A4	HGNC	ENSG00000181856				78	0	0	35	12	25.5319
EIF5A	0	genome.wustl.edu	37	17	7214674	7214674	+	Silent	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	17	7214674	7214674	T	C	SNP	EIF5A	ENST00000336452	human	ensembl	74_37	+1	known	silent	c.366	p.I122	1.000	pfam_Transl_elong_IF5A_C,superfamily_NA-bd_OB-fold,pirsf_Transl_elong_IF5A,tigrfam_Transl_elong_IF5A	pfam_Transl_elong_IF5A_C,pfam_KOW,superfamily_Translation_prot_SH3-like,superfamily_NA-bd_OB-fold,pirsf_Transl_elong_IF5A,tigrfam_Transl_elong_IF5A	-	no_errors	EIF5A	HGNC	ENSG00000132507				114	0	0	61	23	27.381
DNAI2	0	genome.wustl.edu	37	17	72278019	72278019	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	17	72278019	72278019	G	A	SNP	DNAI2	ENST00000311014	human	ensembl	74_37	+1	known	silent	c.63	p.S21	0.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DNAI2	HGNC	ENSG00000171595				232	2	0.854701	123	62	33.5135
DNAI2	0	genome.wustl.edu	37	17	72301516	72301516	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	17	72301516	72301516	G	A	SNP	DNAI2	ENST00000311014	human	ensembl	74_37	+1	known	silent	c.1146	p.T382	0.005	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DNAI2	HGNC	ENSG00000171595				121	0	0	57	23	28.75
KCTD11	0	genome.wustl.edu	37	17	7256323	7256323	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	17	7256323	7256323	G	A	SNP	KCTD11	ENST00000333751	human	ensembl	74_37	+1	known	missense	c.62	p.G21D	0.516	pfam_T1-type_BTB,superfamily_BTB/POZ_fold	pfam_T1-type_BTB,superfamily_BTB/POZ_fold	-	no_errors	KCTD11	HGNC	ENSG00000213859				116	0	0	70	25	26.3158
GRIN2C	0	genome.wustl.edu	37	17	72838813	72838813	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	17	72838813	72838813	C	T	SNP	GRIN2C	ENST00000293190	human	ensembl	74_37	-1	known	missense	c.3463	p.A1155T	0.619	NULL	pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,pfam_ANF_lig-bd_rcpt,pfam_NMDAR2_C,superfamily_Peripla_BP_I,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIN2C	HGNC	ENSG00000161509				11	0	0	5	5	50
NLGN2	0	genome.wustl.edu	37	17	7318418	7318418	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	17	7318418	7318418	C	T	SNP	NLGN2	ENST00000302926	human	ensembl	74_37	+1	known	missense	c.988	p.R330C	0.987	pfam_CarbesteraseB	pfam_CarbesteraseB,pfam_AB_hydrolase_3,prints_Neuroligin	-	no_errors	NLGN2	HGNC	ENSG00000169992				103	0	0	55	20	26.6667
KIAA0195	0	genome.wustl.edu	37	17	73467975	73467975	+	RNA	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	17	73467975	73467975	T	C	SNP	KIAA0195	ENST00000580416	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.372	-	-	-	no_errors	KIAA0195	HGNC	ENSG00000177728				186	0	0	95	54	36.2416
RECQL5	0	genome.wustl.edu	37	17	73625122	73625122	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	17	73625122	73625122	A	G	SNP	RECQL5	ENST00000317905	human	ensembl	74_37	-1	known	missense	c.2381	p.V794A	0.000	pfam_RecQ_helicase-like_5	pfam_RecQ_helicase-like_5,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,tigrfam_DNA_helicase_ATP-dep_RecQ	-	no_errors	RECQL5	HGNC	ENSG00000108469				136	0	0	60	27	31.0345
ZBTB4	0	genome.wustl.edu	37	17	7365936	7365936	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	17	7365936	7365936	C	T	SNP	ZBTB4	ENST00000311403	human	ensembl	74_37	-1	known	missense	c.2365	p.A789T	0.024	pfscan_Znf_C2H2	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB4	HGNC	ENSG00000174282				221	0	0	128	15	10.4895
SLC35G6	0	genome.wustl.edu	37	17	7385573	7385573	+	Silent	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	17	7385573	7385573	T	C	SNP	SLC35G6	ENST00000412468	human	ensembl	74_37	+1	known	silent	c.270	p.R90	0.041	pfam_DMT	pfam_DMT	-	no_errors	SLC35G6	HGNC	ENSG00000259224				475	1	0.210084	262	79	23.1672
FBF1	0	genome.wustl.edu	37	17	73910955	73910955	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	17	73910955	73910955	C	T	SNP	FBF1	ENST00000389570	human	ensembl	74_37	-1	known	missense	c.2645	p.R882H	1.000	NULL	superfamily_HRDC-like	-	no_errors	FBF1	HGNC	ENSG00000188878				40	0	0	20	8	28.5714
EVPL	0	genome.wustl.edu	37	17	74018092	74018092	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	17	74018092	74018092	G	A	SNP	EVPL	ENST00000301607	human	ensembl	74_37	-1	known	silent	c.663	p.R221	0.715	NULL	pfam_Plectin_repeat,superfamily_Ferritin-like_SF,smart_Spectrin/alpha-actinin,smart_Plectin_repeat	-	no_errors	EVPL	HGNC	ENSG00000167880				9	0	0	6	3	33.3333
CYGB	0	genome.wustl.edu	37	17	74527136	74527136	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	17	74527136	74527136	C	T	SNP	CYGB	ENST00000293230	human	ensembl	74_37	-1	known	missense	c.464	p.R155H	0.909	superfamily_Globin-like,pfscan_Globin,prints_Myoglobin	pfam_Globin,superfamily_Globin-like,pfscan_Globin,prints_Globin_lamprey/hagfish,prints_Myoglobin	-	no_errors	CYGB	HGNC	ENSG00000161544				70	0	0	23	12	34.2857
MGAT5B	0	genome.wustl.edu	37	17	74865037	74865037	+	RNA	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	17	74865037	74865037	G	A	SNP	MGAT5B	ENST00000374998	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	MGAT5B	HGNC	ENSG00000167889				31	0	0	10	9	47.3684
SEC14L1	0	genome.wustl.edu	37	17	75202391	75202391	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	17	75202391	75202391	T	A	SNP	SEC14L1	ENST00000392476	human	ensembl	74_37	+1	known	missense	c.1250	p.I417N	1.000	pfam_CRAL-TRIO_dom,superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom	pfam_PRELI/MSF1,pfam_CRAL-TRIO_dom,pfam_CRAL/TRIO_N_dom,superfamily_CRAL-TRIO_dom,superfamily_CRAL/TRIO_N_dom,superfamily_GOLD,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom,pfscan_GOLD,pfscan_PRELI/MSF1	-	no_errors	SEC14L1	HGNC	ENSG00000129657				115	0	0	50	23	31.5068
SEC14L1	0	genome.wustl.edu	37	17	75202481	75202481	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	17	75202481	75202481	T	C	SNP	SEC14L1	ENST00000392476	human	ensembl	74_37	+1	known	missense	c.1340	p.L447P	1.000	pfam_CRAL-TRIO_dom,superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom	pfam_PRELI/MSF1,pfam_CRAL-TRIO_dom,pfam_CRAL/TRIO_N_dom,superfamily_CRAL-TRIO_dom,superfamily_CRAL/TRIO_N_dom,superfamily_GOLD,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom,pfscan_GOLD,pfscan_PRELI/MSF1	-	no_errors	SEC14L1	HGNC	ENSG00000129657				102	0	0	40	16	28.5714
SEPT9	0	genome.wustl.edu	37	17	75493432	75493432	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	17	75493432	75493432	C	T	SNP	SEPT9	ENST00000427177	human	ensembl	74_37	+1	known	missense	c.1609	p.R537W	1.000	pfam_Cell_div_GTP-bd,superfamily_P-loop_NTPase	pfam_Cell_div_GTP-bd,pfam_Ribosome_biogen_GTPase_RsgA,pfam_AIG1,superfamily_P-loop_NTPase	-	no_errors	SEPT9	HGNC	ENSG00000184640				35	0	0	23	14	37.8378
TP53	0	genome.wustl.edu	37	17	7577120	7577120	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	17	7577120	7577120	C	T	SNP	TP53	ENST00000269305	human	ensembl	74_37	-1	known	missense	c.818	p.R273H	0.864	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510				60	0	0	32	10	23.8095
TP53	0	genome.wustl.edu	37	17	7578427	7578427	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	17	7578427	7578427	T	C	SNP	TP53	ENST00000269305	human	ensembl	74_37	-1	known	missense	c.503	p.H168R	0.995	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510				126	0	0	47	18	27.6923
CYTH1	0	genome.wustl.edu	37	17	76696475	76696475	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	17	76696475	76696475	C	T	SNP	CYTH1	ENST00000361101	human	ensembl	74_37	-1	known	missense	c.488	p.R163Q	1.000	pfam_Sec7_dom,superfamily_Sec7_dom,smart_Sec7_dom,pfscan_Sec7_dom	pfam_Sec7_dom,pfam_Pleckstrin_homology,superfamily_Sec7_dom,smart_Sec7_dom,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Sec7_dom	-	no_errors	CYTH1	HGNC	ENSG00000108669				38	0	0	27	5	15.625
CYTH1	0	genome.wustl.edu	37	17	76705763	76705763	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	17	76705763	76705763	C	T	SNP	CYTH1	ENST00000361101	human	ensembl	74_37	-1	known	missense	c.74	p.R25Q	0.997	NULL	pfam_Sec7_dom,pfam_Pleckstrin_homology,superfamily_Sec7_dom,smart_Sec7_dom,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Sec7_dom	-	no_errors	CYTH1	HGNC	ENSG00000108669				173	1	0.574713	86	36	29.5082
CYB5D1	0	genome.wustl.edu	37	17	7761604	7761604	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	17	7761604	7761604	A	G	SNP	CYB5D1	ENST00000332439	human	ensembl	74_37	+1	known	missense	c.152	p.E51G	0.001	pfam_Cyt_B5-like_heme/steroid-bd,superfamily_Cyt_B5-like_heme/steroid-bd,pfscan_Cyt_B5-like_heme/steroid-bd	pfam_Cyt_B5-like_heme/steroid-bd,superfamily_Cyt_B5-like_heme/steroid-bd,pfscan_Cyt_B5-like_heme/steroid-bd	-	no_errors	CYB5D1	HGNC	ENSG00000182224				146	0	0	113	8	6.61157
CCDC40	0	genome.wustl.edu	37	17	78055787	78055787	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	17	78055787	78055787	T	C	SNP	CCDC40	ENST00000397545	human	ensembl	74_37	+1	known	missense	c.1919	p.M640T	0.880	NULL	pfam_E3_ubiquit_lig_BRE1	-	no_errors	CCDC40	HGNC	ENSG00000141519				76	0	0	32	15	31.9149
RNF213	0	genome.wustl.edu	37	17	78317675	78317675	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	17	78317675	78317675	G	C	SNP	RNF213	ENST00000582970	human	ensembl	74_37	+1	known	missense	c.6202	p.V2068L	0.101	NULL	superfamily_P-loop_NTPase,smart_AAA+_ATPase,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF213	HGNC	ENSG00000173821				308	0	0	191	29	13.1818
RNF213	0	genome.wustl.edu	37	17	78338303	78338303	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	17	78338303	78338303	G	A	SNP	RNF213	ENST00000582970	human	ensembl	74_37	+1	known	missense	c.11821	p.V3941I	0.000	NULL	superfamily_P-loop_NTPase,smart_AAA+_ATPase,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF213	HGNC	ENSG00000173821				97	0	0	55	19	25.6757
RNF213	0	genome.wustl.edu	37	17	78346449	78346449	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	17	78346449	78346449	G	A	SNP	RNF213	ENST00000582970	human	ensembl	74_37	+1	known	silent	c.12666	p.S4222	0.000	NULL	superfamily_P-loop_NTPase,smart_AAA+_ATPase,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF213	HGNC	ENSG00000173821				59	0	0	27	24	47.0588
RNF213	0	genome.wustl.edu	37	17	78360232	78360232	+	Splice_Site	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	17	78360232	78360232	T	C	SNP	RNF213	ENST00000582970	human	ensembl	74_37	+1	known	splice_site	c.14720+2	e61+2	0.996	-	-	-	no_errors	RNF213	HGNC	ENSG00000173821				72	0	0	46	14	23.3333
SLC38A10	0	genome.wustl.edu	37	17	79220314	79220314	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	17	79220314	79220314	C	T	SNP	SLC38A10	ENST00000374759	human	ensembl	74_37	-1	known	missense	c.2402	p.R801H	0.005	NULL	pfam_AA_transpt_TM	-	no_errors	SLC38A10	HGNC	ENSG00000157637				78	0	0	28	15	34.8837
OXLD1	0	genome.wustl.edu	37	17	79632587	79632587	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	17	79632587	79632587	A	G	SNP	OXLD1	ENST00000374741	human	ensembl	74_37	-1	known	missense	c.88	p.C30R	0.000	NULL	pfam_Oxidoreductase-like_N	-	no_errors	OXLD1	HGNC	ENSG00000204237				63	0	0	36	6	14.2857
FASN	0	genome.wustl.edu	37	17	80049217	80049217	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	17	80049217	80049217	G	A	SNP	FASN	ENST00000306749	human	ensembl	74_37	-1	known	missense	c.1373	p.A458V	0.949	NULL	pfam_Acyl_transferase,pfam_Ketoacyl_synth_N,pfam_Thioesterase,pfam_PKS_KR,pfam_DH_sc/Rdtase_SDR,pfam_Ketoacyl_synth_C,pfam_ADH_C,pfam_Acyl_carrier_prot-like,pfam_Methyltransf_12,pfam_Methyltransf_11,superfamily_Thiolase-like,superfamily_Acyl_Trfase/lysoPLipase,superfamily_GroES-like,superfamily_Acyl_carrier_prot-like,superfamily_Malonyl_transacylase_ACP-bd,smart_PKS_Beta-ketoAc_synthase_dom,smart_PKS_acyl_transferase,smart_PKS_dehydratase,smart_PKS_ER,smart_PKS/FAS_KR,smart_PKS_PP-bd,pfscan_Acyl_carrier_prot-like	-	no_errors	FASN	HGNC	ENSG00000169710				32	0	0	18	8	30.7692
CCDC57	0	genome.wustl.edu	37	17	80059697	80059697	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	17	80059697	80059697	T	C	SNP	CCDC57	ENST00000389641	human	ensembl	74_37	-1	known	missense	c.2612	p.Q871R	0.000	NULL	NULL	-	no_errors	CCDC57	HGNC	ENSG00000176155				123	1	0.806452	66	26	28.2609
ALOXE3	0	genome.wustl.edu	37	17	8013711	8013711	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	17	8013711	8013711	C	T	SNP	ALOXE3	ENST00000318227	human	ensembl	74_37	-1	known	missense	c.1489	p.A497T	1.000	pfam_LipOase_C,superfamily_LipOase_C	pfam_LipOase_C,pfam_PLAT/LH2_dom,superfamily_LipOase_C,superfamily_Lipase_LipOase,smart_PLAT/LH2_dom,pfscan_PLAT/LH2_dom,prints_LipOase_C	-	no_errors	ALOXE3	HGNC	ENSG00000179148				50	0	0	19	10	34.4828
RAB40B	0	genome.wustl.edu	37	17	80615771	80615771	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	17	80615771	80615771	T	G	SNP	RAB40B	ENST00000571995	human	ensembl	74_37	-1	known	missense	c.805	p.N269H	0.004	NULL	pfam_Small_GTPase,pfam_MIRO-like,pfam_SOCS_C,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,smart_SOCS_C,pfscan_SOCS_C,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB40B	HGNC	ENSG00000141542				266	1	0.374532	149	59	28.3654
AURKB	0	genome.wustl.edu	37	17	8108325	8108325	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	17	8108325	8108325	G	A	SNP	AURKB	ENST00000585124	human	ensembl	74_37	-1	known	missense	c.899	p.A300V	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	AURKB	HGNC	ENSG00000178999				79	0	0	46	17	26.9841
CTC1	0	genome.wustl.edu	37	17	8138088	8138088	+	Silent	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	17	8138088	8138088	T	C	SNP	CTC1	ENST00000315684	human	ensembl	74_37	-1	known	silent	c.1596	p.P532	0.222	NULL	NULL	-	no_errors	CTC1	HGNC	ENSG00000178971				101	0	0	56	31	35.6322
WDR16	0	genome.wustl.edu	37	17	9489252	9489252	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	17	9489252	9489252	A	G	SNP	WDR16	ENST00000299764	human	ensembl	74_37	+1	known	missense	c.263	p.Y88C	0.787	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR16	HGNC	ENSG00000166596				278	0	0	173	14	7.48663
RCVRN	0	genome.wustl.edu	37	17	9801318	9801318	+	RNA	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	17	9801318	9801318	C	T	SNP	RCVRN	ENST00000570909	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	RCVRN	HGNC	ENSG00000109047				96	0	0	24	40	62.5
LDLRAD4	0	genome.wustl.edu	37	18	13387564	13387564	+	RNA	SNP	G	G	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	18	13387564	13387564	G	C	SNP	LDLRAD4	ENST00000590371	human	ensembl	74_37	+1	putative	rna	NULL	NULL	0.001	-	-	-	no_errors	LDLRAD4	HGNC	ENSG00000168675				37	0	0	8	5	38.4615
MC2R	0	genome.wustl.edu	37	18	13884985	13884985	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	18	13884985	13884985	A	G	SNP	MC2R	ENST00000327606	human	ensembl	74_37	-1	known	missense	c.533	p.F178S	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_ACTH_rcpt,prints_Melcrt_ACTH_rcpt,prints_GPCR_Rhodpsn	-	no_errors	MC2R	HGNC	ENSG00000185231				153	0	0	78	34	30.3571
ROCK1	0	genome.wustl.edu	37	18	18588031	18588031	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	18	18588031	18588031	A	G	SNP	ROCK1	ENST00000399799	human	ensembl	74_37	-1	known	missense	c.1535	p.V512A	1.000	pfam_HR1_rho-bd,pirsf_Rho-assoc_coiled-coil_kin	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Rho-bd_dom,pfam_HR1_rho-bd,pfam_Pleckstrin_homology,pfam_Pkinase_C,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,smart_Pleckstrin_homology,smart_Prot_Kinase_C-like_PE/DAG-bd,pirsf_Rho-assoc_coiled-coil_kin,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_dom	-	no_errors	ROCK1	HGNC	ENSG00000067900				59	0	0	17	6	26.087
LAMA3	0	genome.wustl.edu	37	18	21441613	21441613	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	18	21441613	21441613	G	C	SNP	LAMA3	ENST00000313654	human	ensembl	74_37	+1	known	missense	c.4426	p.V1476L	1.000	superfamily_Growth_fac_rcpt_N_dom,pfscan_Laminin_B_type_IV	pfam_EGF_laminin,pfam_Laminin_G,pfam_Laminin_I,pfam_Laminin_N,pfam_Laminin_II,pfam_Laminin_B_type_IV,superfamily_ConA-like_lec_gl_sf,superfamily_Growth_fac_rcpt_N_dom,superfamily_Galactose-bd-like,superfamily_STAT_TF_coiled-coil,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	LAMA3	HGNC	ENSG00000053747				95	0	0	50	4	7.40741
THOC1	0	genome.wustl.edu	37	18	216529	216529	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	18	216529	216529	T	C	SNP	THOC1	ENST00000261600	human	ensembl	74_37	-1	known	missense	c.1559	p.E520G	0.999	NULL	pfam_THO_THOC1,pfam_Death_domain,superfamily_DEATH-like_dom,smart_Death_domain,pfscan_Death_domain	-	no_errors	THOC1	HGNC	ENSG00000079134				413	0	0	186	96	34.0426
ZNF521	0	genome.wustl.edu	37	18	22805224	22805224	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	18	22805224	22805224	G	A	SNP	ZNF521	ENST00000361524	human	ensembl	74_37	-1	known	silent	c.2658	p.Y886	0.396	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF521	HGNC	ENSG00000198795				144	1	0.689655	64	31	32.6316
TAF4B	0	genome.wustl.edu	37	18	23866258	23866258	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	18	23866258	23866258	T	C	SNP	TAF4B	ENST00000269142	human	ensembl	74_37	+1	known	missense	c.1385	p.V462A	0.985	NULL	pfam_TAF4,pfam_TAFH_NHR1,superfamily_Histone-fold,smart_TAFH_NHR1,pfscan_TAFH_NHR1	-	no_errors	TAF4B	HGNC	ENSG00000141384				120	0	0	49	22	30.9859
LPIN2	0	genome.wustl.edu	37	18	2920878	2920878	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	18	2920878	2920878	T	C	SNP	LPIN2	ENST00000261596	human	ensembl	74_37	-1	known	missense	c.2444	p.D815G	1.000	pfam_LNS2,superfamily_HAD-like_dom,smart_LNS2	pfam_LNS2,pfam_Lipin_N,superfamily_HAD-like_dom,smart_LNS2	-	no_errors	LPIN2	HGNC	ENSG00000101577				121	0	0	67	35	34.3137
SLC25A52	0	genome.wustl.edu	37	18	29340013	29340013	+	Silent	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	18	29340013	29340013	T	C	SNP	SLC25A52	ENST00000269205	human	ensembl	74_37	-1	known	silent	c.642	p.A214	0.448	superfamily_Mt_carrier_dom	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	-	no_errors	SLC25A52	HGNC	ENSG00000141437				180	0	0	121	14	10.3704
ENSG00000263606	0	genome.wustl.edu	37	18	2946531	2946531	+	RNA	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	18	2946531	2946531	C	T	SNP	ENSG00000263606	ENST00000581139	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.998	-	-	-	no_errors	RP11-737O24.3	Clone_based_vega_gene	ENSG00000263606				30	0	0	12	9	42.8571
KLHL14	0	genome.wustl.edu	37	18	30260415	30260415	+	Silent	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	18	30260415	30260415	C	T	SNP	KLHL14	ENST00000359358	human	ensembl	74_37	-1	known	silent	c.1386	p.A462	0.787	pfam_Kelch_1,smart_Kelch_1,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL14	HGNC	ENSG00000197705				236	0	0	132	48	26.6667
MOCOS	0	genome.wustl.edu	37	18	33848583	33848583	+	Silent	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	18	33848583	33848583	T	C	SNP	MOCOS	ENST00000261326	human	ensembl	74_37	+1	known	silent	c.2602	p.L868	0.987	NULL	pfam_MOSC_N,pfam_MoCF_Sase_C,pfam_Aminotrans_V/Cys_dSase,superfamily_PyrdxlP-dep_Trfase,superfamily_Pyrv_Knase-like_insert_dom	-	no_errors	MOCOS	HGNC	ENSG00000075643				306	0	0	198	28	12.3894
KIAA1328	0	genome.wustl.edu	37	18	34753044	34753044	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	18	34753044	34753044	G	A	SNP	KIAA1328	ENST00000280020	human	ensembl	74_37	+1	known	missense	c.1523	p.R508Q	0.940	NULL	NULL	-	no_errors	KIAA1328	HGNC	ENSG00000150477				181	1	0.549451	101	29	22.3077
CELF4	0	genome.wustl.edu	37	18	34854302	34854302	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	18	34854302	34854302	A	G	SNP	CELF4	ENST00000420428	human	ensembl	74_37	-1	known	missense	c.773	p.F258S	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	CELF4	HGNC	ENSG00000101489				234	0	0	157	14	8.18713
CTIF	0	genome.wustl.edu	37	18	46385820	46385820	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	18	46385820	46385820	A	G	SNP	CTIF	ENST00000382998	human	ensembl	74_37	+1	known	missense	c.1693	p.T565A	1.000	pfam_MIF4G-like_typ-3,superfamily_ARM-type_fold,smart_MIF4G-like_typ-3	pfam_MIF4G-like_typ-3,superfamily_ARM-type_fold,smart_MIF4G-like_typ-3	-	no_errors	CTIF	HGNC	ENSG00000134030				232	2	0.854701	106	42	28.3784
DCC	0	genome.wustl.edu	37	18	50985668	50985668	+	Silent	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	18	50985668	50985668	T	C	SNP	DCC	ENST00000442544	human	ensembl	74_37	+1	known	silent	c.3459	p.L1153	0.999	pfam_Neogenin_C	pfam_Neogenin_C,pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	DCC	HGNC	ENSG00000187323				198	0	0	110	16	12.6984
DCC	0	genome.wustl.edu	37	18	50985691	50985691	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	18	50985691	50985691	A	G	SNP	DCC	ENST00000442544	human	ensembl	74_37	+1	known	missense	c.3482	p.E1161G	1.000	pfam_Neogenin_C	pfam_Neogenin_C,pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	DCC	HGNC	ENSG00000187323				224	0	0	132	18	12
DCC	0	genome.wustl.edu	37	18	51025784	51025784	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	18	51025784	51025784	A	G	SNP	DCC	ENST00000442544	human	ensembl	74_37	+1	known	missense	c.4015	p.T1339A	1.000	pfam_Neogenin_C	pfam_Neogenin_C,pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	DCC	HGNC	ENSG00000187323				239	0	0	135	10	6.89655
WDR7	0	genome.wustl.edu	37	18	54358512	54358512	+	Silent	SNP	C	C	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	18	54358512	54358512	C	G	SNP	WDR7	ENST00000254442	human	ensembl	74_37	+1	known	silent	c.783	p.T261	0.277	superfamily_Quinonprotein_ADH-like_supfam	pfam_WD40_repeat,superfamily_Quinonprotein_ADH-like_supfam,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR7	HGNC	ENSG00000091157				256	1	0.389105	141	51	26.5625
ONECUT2	0	genome.wustl.edu	37	18	55103632	55103632	+	Silent	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	18	55103632	55103632	C	T	SNP	ONECUT2	ENST00000491143	human	ensembl	74_37	+1	known	silent	c.684	p.A228	0.956	NULL	pfam_Hmoeo_CUT,pfam_Homeobox_dom,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Hmoeo_CUT	-	no_errors	ONECUT2	HGNC	ENSG00000119547				51	0	0	15	14	48.2759
ATP8B1	0	genome.wustl.edu	37	18	55322536	55322536	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	18	55322536	55322536	G	A	SNP	ATP8B1	ENST00000283684	human	ensembl	74_37	-1	known	nonsense	c.2821	p.R941*	1.000	tigrfam_Cation_transp_P_typ_ATPase	pfam_ATPase_P-typ_transduc_dom_A,pfam_HAD-like_dom,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Plipid-transp,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP8B1	HGNC	ENSG00000081923				139	0	0	66	28	29.7872
ATP8B1	0	genome.wustl.edu	37	18	55355665	55355665	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	18	55355665	55355665	G	A	SNP	ATP8B1	ENST00000283684	human	ensembl	74_37	-1	known	missense	c.1295	p.T432I	1.000	tigrfam_ATPase_P-typ_Plipid-transp	pfam_ATPase_P-typ_transduc_dom_A,pfam_HAD-like_dom,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Plipid-transp,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP8B1	HGNC	ENSG00000081923				260	0	0	141	61	30.198
ZNF532	0	genome.wustl.edu	37	18	56651514	56651514	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	18	56651514	56651514	G	T	SNP	ZNF532	ENST00000336078	human	ensembl	74_37	+1	known	missense	c.3722	p.G1241V	0.997	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF532	HGNC	ENSG00000074657				81	0	0	42	19	31.1475
RAX	0	genome.wustl.edu	37	18	56939715	56939715	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	18	56939715	56939715	T	C	SNP	RAX	ENST00000334889	human	ensembl	74_37	-1	known	missense	c.421	p.T141A	1.000	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	pfam_Homeobox_dom,pfam_OAR_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_OAR_dom,pfscan_Homeobox_dom	-	no_errors	RAX	HGNC	ENSG00000134438				211	0	0	86	32	27.1186
LMAN1	0	genome.wustl.edu	37	18	56998753	56998753	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	18	56998753	56998753	T	C	SNP	LMAN1	ENST00000251047	human	ensembl	74_37	-1	known	missense	c.1393	p.K465E	0.994	NULL	pfam_Lectin_leg,superfamily_ConA-like_lec_gl_sf,superfamily_HMG_box_dom	-	no_errors	LMAN1	HGNC	ENSG00000074695				165	1	0.60241	83	39	31.9672
MC4R	0	genome.wustl.edu	37	18	58038674	58038674	+	Silent	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	18	58038674	58038674	T	C	SNP	MC4R	ENST00000299766	human	ensembl	74_37	-1	known	silent	c.909	p.A303	0.981	pfam_7TM_GPCR_olfarory/Srsx,prints_GPCR_Rhodpsn,prints_Cnbnoid_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Melcrt_ACTH_rcpt,prints_Mcort_rcpt_4,prints_GPCR_Rhodpsn,prints_Melancort_rcpt,prints_Cnbnoid_rcpt	-	no_errors	MC4R	HGNC	ENSG00000166603				199	0	0	139	8	5.44218
PHLPP1	0	genome.wustl.edu	37	18	60630645	60630645	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	18	60630645	60630645	C	T	SNP	PHLPP1	ENST00000262719	human	ensembl	74_37	+1	known	missense	c.3500	p.A1167V	0.998	smart_PP2C-like_dom	pfam_PP2C-like_dom,pfam_Leu-rich_rpt,superfamily_PP2C-like_dom,smart_Leu-rich_rpt_typical-subtyp,smart_PP2C-like_dom,pfscan_Pleckstrin_homology	-	no_errors	PHLPP1	HGNC	ENSG00000081913				45	0	0	14	8	36.3636
PHLPP1	0	genome.wustl.edu	37	18	60645758	60645758	+	Silent	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	18	60645758	60645758	C	T	SNP	PHLPP1	ENST00000262719	human	ensembl	74_37	+1	known	silent	c.4248	p.S1416	0.857	superfamily_PP2C-like_dom,smart_PP2C-like_dom	pfam_PP2C-like_dom,pfam_Leu-rich_rpt,superfamily_PP2C-like_dom,smart_Leu-rich_rpt_typical-subtyp,smart_PP2C-like_dom,pfscan_Pleckstrin_homology	-	no_errors	PHLPP1	HGNC	ENSG00000081913				20	0	0	11	3	21.4286
BCL2	0	genome.wustl.edu	37	18	60985517	60985517	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	18	60985517	60985517	C	T	SNP	BCL2	ENST00000333681	human	ensembl	74_37	-1	known	missense	c.383	p.G128E	0.286	pfam_Blc2_fam,pfscan_Bcl2-like,prints_Apop_reg_BclX,tigrfam_Bcl2/BclX	pfam_Blc2_fam,pfam_Bcl2_BH4,smart_Bcl2_BH4,pfscan_Bcl2-like,pfscan_Bcl2_BH4,prints_Apop_reg_Bcl2,prints_Blc2_fam,prints_Apop_reg_BclX,tigrfam_Bcl2/BclX	-	no_errors	BCL2	HGNC	ENSG00000171791				167	0	0	111	9	7.5
VPS4B	0	genome.wustl.edu	37	18	61067315	61067315	+	Silent	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	18	61067315	61067315	A	G	SNP	VPS4B	ENST00000238497	human	ensembl	74_37	-1	known	silent	c.756	p.R252	0.081	pfam_ATPase_AAA_core,pfam_DNA_helicase_Holl-junc_RuvB_N,superfamily_P-loop_NTPase,smart_AAA+_ATPase	pfam_ATPase_AAA_core,pfam_Vps4_C,pfam_MIT,pfam_IstB_ATP-bd,pfam_ATPase_dyneun-rel_AAA,pfam_DNA_helicase_Holl-junc_RuvB_N,superfamily_P-loop_NTPase,smart_MIT,smart_AAA+_ATPase	-	no_errors	VPS4B	HGNC	ENSG00000119541				118	0	0	76	40	34.4828
SERPINB5	0	genome.wustl.edu	37	18	61166407	61166407	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	18	61166407	61166407	A	T	SNP	SERPINB5	ENST00000382771	human	ensembl	74_37	+1	known	missense	c.622	p.N208Y	0.964	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom,prints_Serpin_B9/Maspin	-	no_errors	SERPINB5	HGNC	ENSG00000206075				142	1	0.699301	65	40	38.0952
SERPINB4	0	genome.wustl.edu	37	18	61306899	61306899	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	18	61306899	61306899	T	C	SNP	SERPINB4	ENST00000341074	human	ensembl	74_37	-1	known	missense	c.581	p.N194S	0.000	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	-	no_errors	SERPINB4	HGNC	ENSG00000206073				88	0	0	75	9	10.7143
SERPINB7	0	genome.wustl.edu	37	18	61471659	61471659	+	Silent	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	18	61471659	61471659	T	C	SNP	SERPINB7	ENST00000336429	human	ensembl	74_37	+1	known	silent	c.933	p.A311	0.003	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	-	no_errors	SERPINB7	HGNC	ENSG00000166396				117	0	0	77	12	13.4831
L3MBTL4	0	genome.wustl.edu	37	18	6239801	6239801	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	18	6239801	6239801	A	G	SNP	L3MBTL4	ENST00000284898	human	ensembl	74_37	-1	known	missense	c.623	p.L208S	0.997	pfam_Mbt,smart_Mbt,pfscan_Mbt	pfam_Mbt,pfam_SAM_type1,pfam_Znf_C2HC,pfam_SAM_2,superfamily_SAM/pointed,smart_Mbt,smart_SAM,pfscan_Mbt,pfscan_SAM	-	no_errors	L3MBTL4	HGNC	ENSG00000154655				149	0	0	84	8	8.69565
CLUL1	0	genome.wustl.edu	37	18	627251	627251	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	18	627251	627251	C	A	SNP	CLUL1	ENST00000338387	human	ensembl	74_37	+1	known	missense	c.578	p.S193Y	0.009	pfam_Clusterin-like,smart_Clusterin_N	pfam_Clusterin-like,smart_Clusterin_N,smart_Clusterin_C	-	no_errors	CLUL1	HGNC	ENSG00000079101				431	0	0	207	103	33.2258
DSEL	0	genome.wustl.edu	37	18	65178220	65178220	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	18	65178220	65178220	T	A	SNP	DSEL	ENST00000310045	human	ensembl	74_37	-1	known	missense	c.3656	p.K1219M	1.000	superfamily_P-loop_NTPase	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase,superfamily_Chondroitin_lyas	-	no_errors	DSEL	HGNC	ENSG00000171451				120	0	0	81	5	5.81395
ARHGAP28	0	genome.wustl.edu	37	18	6873731	6873731	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	18	6873731	6873731	G	A	SNP	ARHGAP28	ENST00000400091	human	ensembl	74_37	+1	known	missense	c.1169	p.R390Q	1.000	superfamily_Rho_GTPase_activation_prot,pfscan_RhoGAP_dom	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP28	HGNC	ENSG00000088756				66	0	0	26	11	29.7297
NETO1	0	genome.wustl.edu	37	18	70502382	70502382	+	RNA	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	18	70502382	70502382	A	G	SNP	NETO1	ENST00000580049	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	NETO1	HGNC	ENSG00000166342				21	0	0	15	8	34.7826
NETO1	0	genome.wustl.edu	37	18	70534507	70534507	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	18	70534507	70534507	A	G	SNP	NETO1	ENST00000327305	human	ensembl	74_37	-1	known	missense	c.20	p.V7A	0.999	NULL	pfam_CUB_dom,pfam_LDrepeatLR_classA_rpt,superfamily_CUB_dom,superfamily_LDrepeatLR_classA_rpt,smart_CUB_dom,smart_LDrepeatLR_classA_rpt,pfscan_CUB_dom,pfscan_LDrepeatLR_classA_rpt	-	no_errors	NETO1	HGNC	ENSG00000166342				21	0	0	9	5	35.7143
ZNF407	0	genome.wustl.edu	37	18	72347183	72347183	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	18	72347183	72347183	C	A	SNP	ZNF407	ENST00000299687	human	ensembl	74_37	+1	known	missense	c.4208	p.S1403Y	0.016	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,smart_Znf_U1,pfscan_Znf_C2H2	-	no_errors	ZNF407	HGNC	ENSG00000215421				139	0	0	56	29	34.1176
TSHZ1	0	genome.wustl.edu	37	18	72998600	72998600	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	18	72998600	72998600	C	T	SNP	TSHZ1	ENST00000580243	human	ensembl	74_37	+1	known	missense	c.1238	p.A413V	0.120	NULL	superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	TSHZ1	HGNC	ENSG00000179981				113	0	0	39	18	31.5789
ZNF516	0	genome.wustl.edu	37	18	74154821	74154821	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	18	74154821	74154821	A	G	SNP	ZNF516	ENST00000443185	human	ensembl	74_37	-1	known	missense	c.190	p.C64R	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF516	HGNC	ENSG00000101493				44	0	0	37	4	9.7561
ZNF236	0	genome.wustl.edu	37	18	74592191	74592191	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	18	74592191	74592191	G	A	SNP	ZNF236	ENST00000253159	human	ensembl	74_37	+1	known	silent	c.1101	p.P367	0.563	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF236	HGNC	ENSG00000130856				132	0	0	59	27	31.3953
ZNF236	0	genome.wustl.edu	37	18	74631811	74631811	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	18	74631811	74631811	G	A	SNP	ZNF236	ENST00000253159	human	ensembl	74_37	+1	known	silent	c.3348	p.T1116	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF236	HGNC	ENSG00000130856				249	0	0	102	47	31.5436
ADNP2	0	genome.wustl.edu	37	18	77894254	77894254	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	18	77894254	77894254	A	G	SNP	ADNP2	ENST00000262198	human	ensembl	74_37	+1	known	missense	c.958	p.T320A	0.024	NULL	superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	ADNP2	HGNC	ENSG00000101544				224	0	0	170	13	7.10383
ADNP2	0	genome.wustl.edu	37	18	77895696	77895696	+	Silent	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	18	77895696	77895696	T	C	SNP	ADNP2	ENST00000262198	human	ensembl	74_37	+1	known	silent	c.2400	p.P800	0.005	NULL	superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	ADNP2	HGNC	ENSG00000101544				267	0	0	122	55	31.0734
PTPRM	0	genome.wustl.edu	37	18	8244194	8244194	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	18	8244194	8244194	T	A	SNP	PTPRM	ENST00000400060	human	ensembl	74_37	+1	known	missense	c.2439	p.N813K	1.000	NULL	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_MAM_dom,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_MAM_dom,smart_Ig_sub,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_MAM_dom,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like_dom,prints_Tyr_Pase_rcpt/non-rcpt,prints_MAM_dom	-	no_errors	PTPRM	HGNC	ENSG00000173482				173	0	0	72	32	30.7692
RAB12	0	genome.wustl.edu	37	18	8609919	8609919	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	18	8609919	8609919	A	T	SNP	RAB12	ENST00000329286	human	ensembl	74_37	+1	known	missense	c.194	p.D65V	1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_EF_GTP-bd_dom,pfam_Gtr1_RagA,pfam_SRP_receptor_beta_su,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_EF_GTP-bd_dom,pfam_Gtr1_RagA,pfam_SRP_receptor_beta_su,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB12	HGNC	ENSG00000206418				59	0	0	26	16	38.0952
SOGA2	0	genome.wustl.edu	37	18	8784835	8784835	+	Silent	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	18	8784835	8784835	C	T	SNP	SOGA2	ENST00000359865	human	ensembl	74_37	+1	known	silent	c.1725	p.D575	1.000	NULL	pfam_SOGA	-	no_errors	SOGA2	HGNC	ENSG00000168502				128	0	0	64	16	20
TXNDC2	0	genome.wustl.edu	37	18	9887067	9887067	+	Silent	SNP	C	C	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	18	9887067	9887067	C	A	SNP	TXNDC2	ENST00000306084	human	ensembl	74_37	+1	known	silent	c.591	p.S197	0.000	pfam_Glutenin	pfam_Thioredoxin_domain,pfam_Glutenin,superfamily_Thioredoxin-like_fold	-	no_errors	TXNDC2	HGNC	ENSG00000168454				360	0	0	161	52	24.4131
ABCA7	0	genome.wustl.edu	37	19	1055276	1055276	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	19	1055276	1055276	A	C	SNP	ABCA7	ENST00000263094	human	ensembl	74_37	+1	known	missense	c.4131	p.E1377D	0.005	NULL	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,superfamily_GroES-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA7	HGNC	ENSG00000064687				33	0	0	11	10	47.619
KRI1	0	genome.wustl.edu	37	19	10670348	10670348	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	19	10670348	10670348	G	A	SNP	KRI1	ENST00000312962	human	ensembl	74_37	-1	known	missense	c.982	p.R328C	1.000	NULL	pfam_KRR1-interact_protein_1	-	no_errors	KRI1	HGNC	ENSG00000129347				127	0	0	79	6	7.05882
KRI1	0	genome.wustl.edu	37	19	10670512	10670512	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	19	10670512	10670512	G	A	SNP	KRI1	ENST00000312962	human	ensembl	74_37	-1	known	missense	c.919	p.R307C	1.000	NULL	pfam_KRR1-interact_protein_1	-	no_errors	KRI1	HGNC	ENSG00000129347				148	0	0	63	33	34.375
HMHA1	0	genome.wustl.edu	37	19	1080015	1080015	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	19	1080015	1080015	A	G	SNP	HMHA1	ENST00000313093	human	ensembl	74_37	+1	known	missense	c.1601	p.Y534C	1.000	NULL	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_FCH_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_RhoGAP_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_RhoGAP_dom	-	no_errors	HMHA1	HGNC	ENSG00000180448				154	0	0	88	46	34.3284
KANK2	0	genome.wustl.edu	37	19	11304581	11304581	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	19	11304581	11304581	G	C	SNP	KANK2	ENST00000432929	human	ensembl	74_37	-1	known	missense	c.175	p.L59V	0.996	pfam_KN_motif	pfam_Ankyrin_rpt,pfam_KN_motif,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	KANK2	HGNC	ENSG00000197256				147	0	0	100	6	5.66038
DOCK6	0	genome.wustl.edu	37	19	11361698	11361698	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	19	11361698	11361698	A	G	SNP	DOCK6	ENST00000294618	human	ensembl	74_37	-1	known	missense	c.572	p.I191T	1.000	NULL	pfam_DOCK_C,pfam_DOCK_C/D_N	-	no_errors	DOCK6	HGNC	ENSG00000130158				43	0	0	33	8	19.5122
CCDC151	0	genome.wustl.edu	37	19	11531591	11531591	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	19	11531591	11531591	T	C	SNP	CCDC151	ENST00000356392	human	ensembl	74_37	-1	known	missense	c.1700	p.N567S	0.000	NULL	NULL	-	no_errors	CCDC151	HGNC	ENSG00000198003				156	0	0	124	14	10.1449
CNN1	0	genome.wustl.edu	37	19	11651959	11651959	+	Silent	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	19	11651959	11651959	T	C	SNP	CNN1	ENST00000252456	human	ensembl	74_37	+1	known	silent	c.132	p.R44	0.001	pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain,prints_Calponin	pfam_Calponin_repeat,pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain,pfscan_Calponin_repeat,prints_SM22_calponin,prints_Calponin	-	no_errors	CNN1	HGNC	ENSG00000130176				45	0	0	36	14	28
ZNF441	0	genome.wustl.edu	37	19	11891889	11891889	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	19	11891889	11891889	A	G	SNP	ZNF441	ENST00000357901	human	ensembl	74_37	+1	known	missense	c.1250	p.K417R	1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF441	HGNC	ENSG00000197044				77	0	0	32	18	36
ZNF439	0	genome.wustl.edu	37	19	11979050	11979050	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	19	11979050	11979050	A	G	SNP	ZNF439	ENST00000304030	human	ensembl	74_37	+1	known	missense	c.1166	p.K389R	0.990	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF439	HGNC	ENSG00000171291				150	0	0	106	12	10.1695
ZNF700	0	genome.wustl.edu	37	19	12060478	12060478	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	19	12060478	12060478	T	C	SNP	ZNF700	ENST00000254321	human	ensembl	74_37	+1	known	missense	c.1639	p.C547R	0.039	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF700	HGNC	ENSG00000196757				189	0	0	115	20	14.8148
LOC100289333	0	genome.wustl.edu	37	19	12318224	12318224	+	RNA	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	19	12318224	12318224	A	G	SNP	LOC100289333	ENST00000415793	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.992	-	-	-	no_errors	CTD-2666L21.1	Clone_based_vega_gene	ENSG00000234773				107	0	0	73	6	7.59494
ZNF799	0	genome.wustl.edu	37	19	12502150	12502150	+	Silent	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	19	12502150	12502150	A	G	SNP	ZNF799	ENST00000430385	human	ensembl	74_37	-1	known	silent	c.1062	p.S354	0.021	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF799	HGNC	ENSG00000196466				338	0	0	246	16	6.10687
ZNF709	0	genome.wustl.edu	37	19	12576123	12576123	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	19	12576123	12576123	A	G	SNP	ZNF709	ENST00000397732	human	ensembl	74_37	-1	known	missense	c.613	p.F205L	0.835	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,pfam_Znf_C2H2_jaz,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF709	HGNC	ENSG00000242852				237	1	0.420168	133	50	27.3224
C19orf24	0	genome.wustl.edu	37	19	1278884	1278884	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	19	1278884	1278884	G	A	SNP	C19orf24	ENST00000469144	human	ensembl	74_37	+1	putative	nonsense	c.75	p.W25*	0.072	NULL	NULL	-	no_errors	C19orf24	HGNC	ENSG00000228300				170	1	0.584795	73	49	40.1639
RAD23A	0	genome.wustl.edu	37	19	13058813	13058813	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	19	13058813	13058813	T	C	SNP	RAD23A	ENST00000586534	human	ensembl	74_37	+1	known	missense	c.224	p.M75T	1.000	pfam_Ubiquitin_dom,pfam_Rad60/SUMO_like,smart_Ubiquitin_dom,pfscan_Ubiquitin_supergroup,tigrfam_Rad23	pfam_XPC-bd,pfam_UBA/Ts_N,pfam_Ubiquitin_dom,pfam_Rad60/SUMO_like,superfamily_XPC-bd,superfamily_UBA-like,smart_Ubiquitin_dom,smart_UBA/transl_elong_EF1B_N_euk,smart_STI1_HS-bd,prints_Rad23,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Ubiquitin_supergroup,tigrfam_Rad23	-	no_errors	RAD23A	HGNC	ENSG00000179262				147	1	0.675676	120	9	6.97674
TRMT1	0	genome.wustl.edu	37	19	13226508	13226508	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	19	13226508	13226508	G	A	SNP	TRMT1	ENST00000357720	human	ensembl	74_37	-1	known	silent	c.385	p.L129	0.000	pfam_TRM1,tigrfam_TRM1	pfam_TRM1,pfam_Znf_CCCH,pfam_tRNA_Trfase_Trm5/Tyw2,smart_Znf_CCCH,tigrfam_TRM1	-	no_errors	TRMT1	HGNC	ENSG00000104907				519	0	0	253	139	35.4592
MRI1	0	genome.wustl.edu	37	19	13879776	13879776	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	19	13879776	13879776	G	A	SNP	MRI1	ENST00000040663	human	ensembl	74_37	+1	known	missense	c.863	p.R288H	0.914	pfam_IF-2B-related,tigrfam_IF-2BI_MTNA,tigrfam_Initiation_fac_2B_a/b/d	pfam_IF-2B-related,tigrfam_IF-2BI_MTNA,tigrfam_Initiation_fac_2B_a/b/d	-	no_errors	MRI1	HGNC	ENSG00000037757				63	0	0	26	8	23.5294
RFX1	0	genome.wustl.edu	37	19	14077502	14077502	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	19	14077502	14077502	C	A	SNP	RFX1	ENST00000254325	human	ensembl	74_37	-1	known	missense	c.1794	p.E598D	0.909	NULL	pfam_RFX1_trans_act,pfam_DNA-bd_RFX	-	no_errors	RFX1	HGNC	ENSG00000132005				140	1	0.70922	86	39	31.2
RFX1	0	genome.wustl.edu	37	19	14094383	14094383	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	19	14094383	14094383	G	A	SNP	RFX1	ENST00000254325	human	ensembl	74_37	-1	known	missense	c.344	p.T115I	0.984	NULL	pfam_RFX1_trans_act,pfam_DNA-bd_RFX	-	no_errors	RFX1	HGNC	ENSG00000132005				18	0	0	12	10	45.4545
IL27RA	0	genome.wustl.edu	37	19	14150709	14150709	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	19	14150709	14150709	C	T	SNP	IL27RA	ENST00000263379	human	ensembl	74_37	+1	known	missense	c.521	p.A174V	0.000	superfamily_Fibronectin_type3,smart_Fibronectin_type3	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	IL27RA	HGNC	ENSG00000104998				218	0	0	103	37	26.4286
LPHN1	0	genome.wustl.edu	37	19	14271413	14271413	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	19	14271413	14271413	C	T	SNP	LPHN1	ENST00000340736	human	ensembl	74_37	-1	known	missense	c.1621	p.A541T	1.000	smart_GPCR_2_extracellular_dom	pfam_GPCR_2_latrophilin_rcpt_C,pfam_Olfac-like,pfam_DUF3497,pfam_GPCR_2_secretin-like,pfam_Lectin_gal-bd_dom,pfam_GPS_dom,pfam_GPCR_2_extracellular_dom,smart_Olfac-like,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_GPS_dom,pfscan_Lectin_gal-bd_dom,pfscan_Olfac-like,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GPCR_2_latrophilin,prints_GPCR_2_secretin-like	-	no_errors	LPHN1	HGNC	ENSG00000072071				29	0	0	13	12	48
DAZAP1	0	genome.wustl.edu	37	19	1434841	1434841	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	19	1434841	1434841	C	T	SNP	DAZAP1	ENST00000233078	human	ensembl	74_37	+1	known	missense	c.1154	p.P385L	0.999	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	DAZAP1	HGNC	ENSG00000071626				45	0	0	23	9	28.125
DDX39A	0	genome.wustl.edu	37	19	14520628	14520628	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	19	14520628	14520628	A	G	SNP	DDX39A	ENST00000242776	human	ensembl	74_37	-1	known	missense	c.790	p.Y264H	1.000	superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,pfscan_Helicase_C	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX39A	HGNC	ENSG00000123136				174	0	0	73	50	40.6504
OR7A17	0	genome.wustl.edu	37	19	14991549	14991549	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	19	14991549	14991549	C	T	SNP	OR7A17	ENST00000327462	human	ensembl	74_37	-1	known	missense	c.619	p.A207T	0.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR7A17	HGNC	ENSG00000185385				237	0	0	89	38	29.9213
NOTCH3	0	genome.wustl.edu	37	19	15296182	15296182	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	19	15296182	15296182	G	A	SNP	NOTCH3	ENST00000263388	human	ensembl	74_37	-1	known	missense	c.2182	p.R728C	0.933	pirsf_Notch,pfam_EG-like_dom,pfam_EGF_extracell,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom	pirsf_Notch,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,pfam_Ankyrin_rpt,pfam_Notch_dom,pfam_Notch_NODP_dom,pfam_Notch_NOD_dom,pfam_EGF_extracell,pfam_DUF3454_notch,superfamily_Ankyrin_rpt-contain_dom,superfamily_Notch_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Notch_dom,smart_Ankyrin_rpt,prints_Notch_3,prints_Notch_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_EG-like_dom,pfscan_Notch_dom	-	no_errors	NOTCH3	HGNC	ENSG00000074181				53	0	0	19	14	42.4242
BRD4	0	genome.wustl.edu	37	19	15367880	15367880	+	Silent	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	19	15367880	15367880	C	T	SNP	BRD4	ENST00000263377	human	ensembl	74_37	-1	known	silent	c.1446	p.P482	0.004	NULL	pfam_Bromodomain,superfamily_Bromodomain,smart_Bromodomain,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BRD4	HGNC	ENSG00000141867				34	0	0	13	4	23.5294
WIZ	0	genome.wustl.edu	37	19	15535738	15535738	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	19	15535738	15535738	C	T	SNP	WIZ	ENST00000389282	human	ensembl	74_37	-1	known	missense	c.4286	p.C1429Y	0.998	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	WIZ	HGNC	ENSG00000011451				26	0	0	10	4	28.5714
OR10H2	0	genome.wustl.edu	37	19	15838975	15838975	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	19	15838975	15838975	G	A	SNP	OR10H2	ENST00000305899	human	ensembl	74_37	+1	known	missense	c.122	p.G41D	0.998	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR10H2	HGNC	ENSG00000171942				357	1	0.27933	183	76	29.3436
MBD3	0	genome.wustl.edu	37	19	1585130	1585130	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	19	1585130	1585130	C	T	SNP	MBD3	ENST00000156825	human	ensembl	74_37	-1	known	missense	c.194	p.R65H	1.000	pfam_Methyl_CpG_DNA-bd,superfamily_DNA-bd_dom,smart_Methyl_CpG_DNA-bd,pfscan_Methyl_CpG_DNA-bd	pfam_Methyl_CpG_DNA-bd,superfamily_DNA-bd_dom,superfamily_ARM-type_fold,smart_Methyl_CpG_DNA-bd,pfscan_Methyl_CpG_DNA-bd	-	no_errors	MBD3	HGNC	ENSG00000071655				59	0	0	40	7	14.8936
OR10H1	0	genome.wustl.edu	37	19	15918424	15918424	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	19	15918424	15918424	C	T	SNP	OR10H1	ENST00000334920	human	ensembl	74_37	-1	known	missense	c.424	p.A142T	0.040	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR10H1	HGNC	ENSG00000186723				183	0	0	77	31	28.7037
CYP4F11	0	genome.wustl.edu	37	19	16024702	16024702	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	19	16024702	16024702	G	A	SNP	CYP4F11	ENST00000248041	human	ensembl	74_37	-1	known	missense	c.1415	p.A472V	0.460	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450,prints_Cyt_P450_E_grp-II	-	no_errors	CYP4F11	HGNC	ENSG00000171903				45	0	0	33	12	26.6667
TCF3	0	genome.wustl.edu	37	19	1615419	1615419	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	19	1615419	1615419	G	A	SNP	TCF3	ENST00000262965	human	ensembl	74_37	-1	known	missense	c.1687	p.R563C	1.000	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	TCF3	HGNC	ENSG00000071564				252	0	0	131	57	30.3191
EPS15L1	0	genome.wustl.edu	37	19	16515477	16515477	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	19	16515477	16515477	G	A	SNP	EPS15L1	ENST00000455140	human	ensembl	74_37	-1	known	silent	c.1350	p.D450	0.872	superfamily_Prefoldin	superfamily_Prefoldin,smart_EPS15_homology,smart_EF_hand_dom,smart_Ubiquitin-int_motif,pfscan_EF_hand_dom,pfscan_EPS15_homology,pfscan_Ubiquitin-int_motif	-	no_errors	EPS15L1	HGNC	ENSG00000127527				132	0	0	55	27	32.9268
TMEM38A	0	genome.wustl.edu	37	19	16793252	16793252	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	19	16793252	16793252	T	C	SNP	TMEM38A	ENST00000187762	human	ensembl	74_37	+1	known	missense	c.487	p.S163P	1.000	pfam_TRIC_channel	pfam_TRIC_channel	-	no_errors	TMEM38A	HGNC	ENSG00000072954				113	0	0	63	25	28.4091
ANO8	0	genome.wustl.edu	37	19	17439208	17439208	+	Silent	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	19	17439208	17439208	C	T	SNP	ANO8	ENST00000159087	human	ensembl	74_37	-1	known	silent	c.1989	p.A663	0.000	pfam_Anoctamin	pfam_Anoctamin	-	no_errors	ANO8	HGNC	ENSG00000074855				13	0	0	10	7	41.1765
UNC13A	0	genome.wustl.edu	37	19	17752329	17752329	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	19	17752329	17752329	C	T	SNP	UNC13A	ENST00000428389	human	ensembl	74_37	-1	known	missense	c.2773	p.G925R	1.000	NULL	pfam_Munc13_subgr_dom-2,pfam_C2_dom,pfam_Ca-dep_secretion_activator,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_C2_dom,smart_C2_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,pfscan_C2_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,prints_C2_dom	-	no_errors	UNC13A	HGNC	ENSG00000130477				90	0	0	58	8	12.1212
KIAA1683	0	genome.wustl.edu	37	19	18376471	18376471	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	19	18376471	18376471	C	T	SNP	KIAA1683	ENST00000392413	human	ensembl	74_37	-1	known	missense	c.1879	p.E627K	0.000	NULL	pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS	-	no_errors	KIAA1683	HGNC	ENSG00000130518				155	0	0	103	10	8.84956
ADAT3	0	genome.wustl.edu	37	19	1913109	1913109	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	19	1913109	1913109	G	A	SNP	ADAT3	ENST00000329478	human	ensembl	74_37	+1	known	missense	c.1063	p.V355M	0.699	superfamily_Cytidine_deaminase-like	pfam_CMP_dCMP_Zn-bd,superfamily_Cytidine_deaminase-like	-	no_errors	ADAT3	HGNC	ENSG00000213638				30	0	0	5	3	37.5
SUGP1	0	genome.wustl.edu	37	19	19414687	19414687	+	RNA	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	19	19414687	19414687	A	G	SNP	SUGP1	ENST00000606725	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	SUGP1	HGNC	ENSG00000105705				427	2	0.4662	217	114	34.4411
CILP2	0	genome.wustl.edu	37	19	19654938	19654938	+	Silent	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	19	19654938	19654938	C	T	SNP	CILP2	ENST00000291495	human	ensembl	74_37	+1	known	silent	c.1584	p.S528	0.016	superfamily_Carb-bd-like_fold	pfam_Thrombospondin_1_rpt,pfam_Ig_I-set,superfamily_Thrombospondin_1_rpt,superfamily_CarboxyPept-like_regulatory,superfamily_Carb-bd-like_fold,smart_Thrombospondin_1_rpt,smart_Ig_sub,smart_Ig_sub2,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like_dom	-	no_errors	CILP2	HGNC	ENSG00000160161				98	0	0	36	15	29.4118
GMIP	0	genome.wustl.edu	37	19	19745393	19745393	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	19	19745393	19745393	G	A	SNP	GMIP	ENST00000203556	human	ensembl	74_37	-1	known	silent	c.2007	p.R669	0.000	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_RhoGAP_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_RhoGAP_dom	-	no_errors	GMIP	HGNC	ENSG00000089639				485	0	0	323	29	8.23864
ZNF208	0	genome.wustl.edu	37	19	22155254	22155254	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	19	22155254	22155254	T	C	SNP	ZNF208	ENST00000397126	human	ensembl	74_37	-1	novel	missense	c.2582	p.Y861C	0.272	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF208	HGNC	ENSG00000160321				166	0	0	107	9	7.75862
DOT1L	0	genome.wustl.edu	37	19	2226522	2226522	+	Silent	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	19	2226522	2226522	T	C	SNP	DOT1L	ENST00000398665	human	ensembl	74_37	+1	known	silent	c.4002	p.G1334	1.000	pirsf_Histone_H3-K79_MeTrfase_met	pfam_DOT1,pirsf_Histone_H3-K79_MeTrfase_met	-	no_errors	DOT1L	HGNC	ENSG00000104885				57	0	0	43	14	24.5614
ZNF729	0	genome.wustl.edu	37	19	22499301	22499301	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	19	22499301	22499301	G	A	SNP	ZNF729	ENST00000601693	human	ensembl	74_37	+1	novel	missense	c.3082	p.A1028T	0.496	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF729	HGNC	ENSG00000196350				101	0	0	42	23	35.3846
ZNF492	0	genome.wustl.edu	37	19	22847068	22847068	+	Silent	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	19	22847068	22847068	C	T	SNP	ZNF492	ENST00000456783	human	ensembl	74_37	+1	known	silent	c.597	p.C199	0.024	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF492	HGNC	ENSG00000229676				25	0	0	14	5	26.3158
ZNF254	0	genome.wustl.edu	37	19	24309406	24309406	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	19	24309406	24309406	A	G	SNP	ZNF254	ENST00000357002	human	ensembl	74_37	+1	known	missense	c.604	p.S202G	0.993	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF254	HGNC	ENSG00000213096				144	0	0	74	18	19.5652
LMNB2	0	genome.wustl.edu	37	19	2434861	2434861	+	Silent	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	19	2434861	2434861	C	T	SNP	LMNB2	ENST00000325327	human	ensembl	74_37	-1	known	silent	c.906	p.A302	0.000	pfam_IF	pfam_IF,pfam_Lamin_tail_dom,superfamily_Prefoldin	-	no_errors	LMNB2	HGNC	ENSG00000176619				40	0	0	20	8	28.5714
PLEKHF1	0	genome.wustl.edu	37	19	30164923	30164923	+	Silent	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	19	30164923	30164923	C	T	SNP	PLEKHF1	ENST00000436066	human	ensembl	74_37	+1	known	silent	c.177	p.N59	0.966	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_Znf_FYVE,pfam_Pleckstrin_homology,superfamily_Znf_FYVE_PHD,smart_Pleckstrin_homology,smart_Znf_FYVE,pfscan_Pleckstrin_homology,pfscan_Znf_FYVE-rel	-	no_errors	PLEKHF1	HGNC	ENSG00000166289				163	0	0	87	36	29.2683
ZNF536	0	genome.wustl.edu	37	19	30934517	30934517	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	19	30934517	30934517	A	T	SNP	ZNF536	ENST00000355537	human	ensembl	74_37	+1	known	missense	c.48	p.E16D	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF536	HGNC	ENSG00000198597				276	0	0	122	57	31.8436
ZNF536	0	genome.wustl.edu	37	19	31039479	31039479	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	19	31039479	31039479	G	A	SNP	ZNF536	ENST00000355537	human	ensembl	74_37	+1	known	missense	c.2953	p.A985T	0.071	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF536	HGNC	ENSG00000198597				285	0	0	114	42	26.9231
ZNF536	0	genome.wustl.edu	37	19	31040415	31040415	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	19	31040415	31040415	T	A	SNP	ZNF536	ENST00000355537	human	ensembl	74_37	+1	known	missense	c.3889	p.L1297M	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF536	HGNC	ENSG00000198597				163	0	0	79	29	26.8519
GNA11	0	genome.wustl.edu	37	19	3121149	3121149	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	19	3121149	3121149	T	C	SNP	GNA11	ENST00000078429	human	ensembl	74_37	+1	known	missense	c.1052	p.L351P	1.000	pfam_Gprotein_alpha_su,superfamily_P-loop_NTPase,smart_Gprotein_alpha_su	pfam_Gprotein_alpha_su,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,superfamily_GproteinA_insert,smart_Gprotein_alpha_su,prints_Gprotein_alpha_su,prints_Gprotein_alpha_Q,prints_Fungi_Gprotein_alpha	-	no_errors	GNA11	HGNC	ENSG00000088256				53	0	0	37	6	13.9535
ZNF507	0	genome.wustl.edu	37	19	32845706	32845706	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	19	32845706	32845706	A	T	SNP	ZNF507	ENST00000311921	human	ensembl	74_37	+1	known	missense	c.1970	p.K657M	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF507	HGNC	ENSG00000168813				123	0	0	65	42	39.2523
RHPN2	0	genome.wustl.edu	37	19	33499019	33499019	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	19	33499019	33499019	A	G	SNP	RHPN2	ENST00000254260	human	ensembl	74_37	-1	known	missense	c.661	p.F221L	1.000	pfam_BRO1_dom,pfscan_BRO1_dom	pfam_BRO1_dom,pfam_HR1_rho-bd,superfamily_HR1_rho-bd,superfamily_PDZ,smart_HR1_rho-bd,smart_PDZ,pfscan_BRO1_dom	-	no_errors	RHPN2	HGNC	ENSG00000131941				75	0	0	46	5	9.80392
ENSG00000267024	0	genome.wustl.edu	37	19	34917079	34917079	+	RNA	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	19	34917079	34917079	T	C	SNP	ENSG00000267024	ENST00000592220	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	CTD-2588C8.8	Clone_based_vega_gene	ENSG00000267024				38	0	0	17	7	29.1667
UBA2	0	genome.wustl.edu	37	19	34945231	34945231	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	19	34945231	34945231	A	G	SNP	UBA2	ENST00000246548	human	ensembl	74_37	+1	known	missense	c.1105	p.N369D	1.000	pfam_UBact_repeat,superfamily_Molybdenum_cofac_synth_MoeB	pfam_ThiF_NAD_FAD-bd,pfam_UBact_repeat,pfam_Ubiquitin-activating_enzyme,superfamily_Molybdenum_cofac_synth_MoeB	-	no_errors	UBA2	HGNC	ENSG00000126261				193	0	0	123	52	29.7143
MFSD12	0	genome.wustl.edu	37	19	3551146	3551146	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	19	3551146	3551146	G	A	SNP	MFSD12	ENST00000585814	human	ensembl	74_37	-1	known	missense	c.76	p.P26S	1.000	NULL	NULL	-	no_errors	MFSD12	HGNC	ENSG00000161091				48	0	0	29	13	30.9524
LGI4	0	genome.wustl.edu	37	19	35617396	35617396	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	19	35617396	35617396	G	A	SNP	LGI4	ENST00000392225	human	ensembl	74_37	-1	putative	missense	c.1154	p.T385M	1.000	NULL	pfam_EPTP,pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,pfscan_EAR	-	no_errors	LGI4	HGNC	ENSG00000153902				19	0	0	7	5	41.6667
CACTIN	0	genome.wustl.edu	37	19	3613205	3613205	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	19	3613205	3613205	A	G	SNP	CACTIN	ENST00000221899	human	ensembl	74_37	-1	known	missense	c.1433	p.L478P	1.000	NULL	pfam_Cactin_dom,pfam_Cactin_C	-	no_errors	CACTIN	HGNC	ENSG00000105298				92	0	0	48	19	28.3582
UPK1A	0	genome.wustl.edu	37	19	36157789	36157789	+	Silent	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	19	36157789	36157789	C	T	SNP	UPK1A	ENST00000379013	human	ensembl	74_37	+1	known	silent	c.75	p.I25	1.000	pfam_Tetraspanin/Peripherin,prints_Tetraspanin	pfam_Tetraspanin/Peripherin,superfamily_Tetraspanin_EC2,prints_Tetraspanin	-	no_errors	UPK1A	HGNC	ENSG00000105668				141	0	0	92	10	9.80392
KMT2B	0	genome.wustl.edu	37	19	36211882	36211882	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	19	36211882	36211882	C	T	SNP	KMT2B	ENST00000222270	human	ensembl	74_37	+1	known	nonsense	c.1633	p.R545*	1.000	pirsf_MeTrfase_trithorax	pirsf_MeTrfase_trithorax,pfam_SET_dom,pfam_FYrich_C,pfam_Znf_PHD-finger,pfam_FYrich_N,pfam_Znf_CXXC,superfamily_Znf_FYVE_PHD,superfamily_Bromodomain,smart_Znf_PHD,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_CXXC	-	no_errors	KMT2B	Uniprot_gn	ENSG00000272333				28	0	0	15	9	37.5
KMT2B	0	genome.wustl.edu	37	19	36221488	36221488	+	Silent	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	19	36221488	36221488	C	T	SNP	KMT2B	ENST00000222270	human	ensembl	74_37	+1	known	silent	c.5247	p.C1749	0.997	pirsf_MeTrfase_trithorax,pfam_FYrich_N,smart_FYrich_N	pirsf_MeTrfase_trithorax,pfam_SET_dom,pfam_FYrich_C,pfam_Znf_PHD-finger,pfam_FYrich_N,pfam_Znf_CXXC,superfamily_Znf_FYVE_PHD,superfamily_Bromodomain,smart_Znf_PHD,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_CXXC	-	no_errors	KMT2B	Uniprot_gn	ENSG00000272333				536	0	0	305	126	29.2343
APLP1	0	genome.wustl.edu	37	19	36363449	36363449	+	Silent	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	19	36363449	36363449	T	C	SNP	APLP1	ENST00000221891	human	ensembl	74_37	+1	known	silent	c.915	p.S305	0.587	superfamily_Amyloid_glyco_E2_domain,prints_Amyloid_glyco	pfam_Amyloid_glyco_heparin-bd,pfam_APP_amyloid_C,superfamily_Amyloid_glyco_E2_domain,superfamily_Amyloid_glyco_heparin-bd,superfamily_Amyloid_glyco_Cu-bd,smart_Amyloid_glyco_extra,prints_Amyloid_glyco	-	no_errors	APLP1	HGNC	ENSG00000105290				322	0	0	238	13	5.17928
PIP5K1C	0	genome.wustl.edu	37	19	3641737	3641737	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	19	3641737	3641737	C	T	SNP	PIP5K1C	ENST00000537021	human	ensembl	74_37	-1	known	missense	c.1753	p.V585M	0.936	NULL	pfam_PInositol-4-P-5-kinase_core,smart_PInositol-4P-5-kinase_core_sub	-	no_errors	PIP5K1C	HGNC	ENSG00000186111				106	0	0	41	5	10.8696
CAPNS1	0	genome.wustl.edu	37	19	36637136	36637136	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	19	36637136	36637136	C	T	SNP	CAPNS1	ENST00000588780	human	ensembl	74_37	+1	known	nonsense	c.673	p.R225*	1.000	NULL	pfscan_EF_hand_dom	-	no_errors	CAPNS1	HGNC	ENSG00000126247				546	2	0.364964	269	97	26.5027
THEG	0	genome.wustl.edu	37	19	375883	375883	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	19	375883	375883	G	A	SNP	THEG	ENST00000342640	human	ensembl	74_37	-1	known	missense	c.88	p.R30C	0.000	NULL	smart_THEG	-	no_errors	THEG	HGNC	ENSG00000105549				116	1	0.854701	61	31	33.6957
ZNF540	0	genome.wustl.edu	37	19	38103201	38103201	+	Silent	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	19	38103201	38103201	A	G	SNP	ZNF540	ENST00000316433	human	ensembl	74_37	+1	known	silent	c.1020	p.G340	0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF540	HGNC	ENSG00000171817				134	0	0	97	9	8.49057
ZNF781	0	genome.wustl.edu	37	19	38160950	38160950	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	19	38160950	38160950	C	T	SNP	ZNF781	ENST00000358582	human	ensembl	74_37	-1	known	missense	c.100	p.E34K	0.001	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF781	HGNC	ENSG00000196381				369	1	0.27027	248	24	8.82353
DPF1	0	genome.wustl.edu	37	19	38713211	38713211	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	19	38713211	38713211	A	G	SNP	DPF1	ENST00000355526	human	ensembl	74_37	-1	known	missense	c.248	p.M83T	1.000	NULL	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_C2H2-like,smart_Znf_PHD,pfscan_Znf_PHD-finger,pfscan_Znf_C2H2	-	no_errors	DPF1	HGNC	ENSG00000011332				52	0	0	18	5	21.7391
DPF1	0	genome.wustl.edu	37	19	38713250	38713250	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	19	38713250	38713250	G	A	SNP	DPF1	ENST00000355526	human	ensembl	74_37	-1	known	missense	c.209	p.S70L	1.000	NULL	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_C2H2-like,smart_Znf_PHD,pfscan_Znf_PHD-finger,pfscan_Znf_C2H2	-	no_errors	DPF1	HGNC	ENSG00000011332				56	0	0	21	8	27.5862
RYR1	0	genome.wustl.edu	37	19	38934419	38934419	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	19	38934419	38934419	T	G	SNP	RYR1	ENST00000359596	human	ensembl	74_37	+1	known	missense	c.407	p.L136R	0.999	pfam_Ins145_P3_rcpt,superfamily_MIR_motif,smart_MIR_motif,pfscan_MIR_motif	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ConA-like_lec_gl_sf,superfamily_MG_RAP_rcpt_1,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_MIR_motif	-	no_errors	RYR1	HGNC	ENSG00000196218				130	0	0	67	29	30.2083
RYR1	0	genome.wustl.edu	37	19	38948774	38948774	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	19	38948774	38948774	T	C	SNP	RYR1	ENST00000359596	human	ensembl	74_37	+1	known	missense	c.2009	p.V670A	1.000	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl_sf,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ConA-like_lec_gl_sf,superfamily_MG_RAP_rcpt_1,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_MIR_motif	-	no_errors	RYR1	HGNC	ENSG00000196218				189	0	0	102	43	29.6552
RYR1	0	genome.wustl.edu	37	19	39002913	39002913	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	19	39002913	39002913	G	A	SNP	RYR1	ENST00000359596	human	ensembl	74_37	+1	known	missense	c.9262	p.V3088M	1.000	NULL	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ConA-like_lec_gl_sf,superfamily_MG_RAP_rcpt_1,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_MIR_motif	-	no_errors	RYR1	HGNC	ENSG00000196218				140	0	0	78	20	20.4082
RYR1	0	genome.wustl.edu	37	19	39051818	39051818	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	19	39051818	39051818	G	A	SNP	RYR1	ENST00000359596	human	ensembl	74_37	+1	known	silent	c.12348	p.A4116	0.081	NULL	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ConA-like_lec_gl_sf,superfamily_MG_RAP_rcpt_1,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_MIR_motif	-	no_errors	RYR1	HGNC	ENSG00000196218				147	0	0	68	39	36.4486
ACTN4	0	genome.wustl.edu	37	19	39214810	39214810	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	19	39214810	39214810	C	T	SNP	ACTN4	ENST00000252699	human	ensembl	74_37	+1	known	missense	c.1706	p.A569V	1.000	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_CH-domain,pfam_EF-hand_Ca_insen,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_EF_hand_dom,pfscan_CH-domain,pfscan_EF_hand_dom	-	no_errors	ACTN4	HGNC	ENSG00000130402				159	0	0	107	6	5.30973
CAPN12	0	genome.wustl.edu	37	19	39232471	39232471	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	19	39232471	39232471	C	T	SNP	CAPN12	ENST00000328867	human	ensembl	74_37	-1	known	missense	c.506	p.R169H	0.994	pfam_Peptidase_C2_calpain_cat,smart_Peptidase_C2_calpain_cat,pfscan_Peptidase_C2_calpain_cat,prints_Calpain_cysteine_protease	pfam_Peptidase_C2_calpain_cat,pfam_Calpain_domain_III,superfamily_Calpain_domain_III,smart_Peptidase_C2_calpain_cat,smart_Calpain_III,pfscan_EF_hand_dom,pfscan_Peptidase_C2_calpain_cat,prints_Calpain_cysteine_protease	-	no_errors	CAPN12	HGNC	ENSG00000182472				64	0	0	37	12	24.4898
PAK4	0	genome.wustl.edu	37	19	39669106	39669106	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	19	39669106	39669106	C	T	SNP	PAK4	ENST00000358301	human	ensembl	74_37	+1	known	nonsense	c.1663	p.R555*	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_CRIB_dom,superfamily_Kinase-like_dom,smart_CRIB_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_CRIB_dom,pfscan_Prot_kinase_dom	-	no_errors	PAK4	HGNC	ENSG00000130669				29	0	0	12	8	40
PAK4	0	genome.wustl.edu	37	19	39669137	39669137	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	19	39669137	39669137	A	G	SNP	PAK4	ENST00000358301	human	ensembl	74_37	+1	known	missense	c.1694	p.E565G	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_CRIB_dom,superfamily_Kinase-like_dom,smart_CRIB_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_CRIB_dom,pfscan_Prot_kinase_dom	-	no_errors	PAK4	HGNC	ENSG00000130669				45	0	0	25	7	21.875
PAF1	0	genome.wustl.edu	37	19	39876979	39876979	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	19	39876979	39876979	G	A	SNP	PAF1	ENST00000221265	human	ensembl	74_37	-1	known	silent	c.1248	p.S416	0.981	pfam_RNA_pol_II-assoc_Paf1	pfam_RNA_pol_II-assoc_Paf1	-	no_errors	PAF1	HGNC	ENSG00000006712				450	0	0	207	93	31
PIAS4	0	genome.wustl.edu	37	19	4013158	4013158	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	19	4013158	4013158	A	G	SNP	PIAS4	ENST00000262971	human	ensembl	74_37	+1	known	missense	c.265	p.T89A	0.007	NULL	pfam_Znf_MIZ,smart_SAP_dom,pfscan_Znf_MIZ,pfscan_SAP_dom	-	no_errors	PIAS4	HGNC	ENSG00000105229				175	0	0	105	8	7.07965
FBL	0	genome.wustl.edu	37	19	40328367	40328367	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	19	40328367	40328367	T	G	SNP	FBL	ENST00000221801	human	ensembl	74_37	-1	known	missense	c.666	p.K222N	1.000	pfam_Fibrillarin,pirsf_Fibrillarin,prints_Fibrillarin	pfam_Fibrillarin,pirsf_Fibrillarin,prints_Fibrillarin	-	no_errors	FBL	HGNC	ENSG00000105202				232	0	0	110	52	32.0988
ZNF780B	0	genome.wustl.edu	37	19	40540940	40540940	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	19	40540940	40540940	C	G	SNP	ZNF780B	ENST00000434248	human	ensembl	74_37	-1	known	missense	c.1826	p.G609A	1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF780B	HGNC	ENSG00000128000				248	0	0	152	8	5
MAP3K10	0	genome.wustl.edu	37	19	40698374	40698374	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	19	40698374	40698374	G	T	SNP	MAP3K10	ENST00000253055	human	ensembl	74_37	+1	known	missense	c.436	p.A146S	1.000	pirsf_MAPKKK9/10/11,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pirsf_MAPKKK9/10/11,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_SH3_2,pfam_SH3_domain,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_SH3_domain,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH3_domain,pfscan_SH3_domain,pfscan_Prot_kinase_dom	-	no_errors	MAP3K10	HGNC	ENSG00000130758				86	0	0	55	6	9.83607
MAP3K10	0	genome.wustl.edu	37	19	40712031	40712031	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	19	40712031	40712031	C	T	SNP	MAP3K10	ENST00000253055	human	ensembl	74_37	+1	known	missense	c.1402	p.R468W	1.000	pirsf_MAPKKK9/10/11	pirsf_MAPKKK9/10/11,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_SH3_2,pfam_SH3_domain,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_SH3_domain,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH3_domain,pfscan_SH3_domain,pfscan_Prot_kinase_dom	-	no_errors	MAP3K10	HGNC	ENSG00000130758				60	0	0	22	14	38.8889
PRX	0	genome.wustl.edu	37	19	40899994	40899994	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	19	40899994	40899994	C	T	SNP	PRX	ENST00000324001	human	ensembl	74_37	-1	known	missense	c.4265	p.R1422Q	0.879	NULL	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	PRX	HGNC	ENSG00000105227				171	0	0	92	39	29.771
SPTBN4	0	genome.wustl.edu	37	19	41012169	41012169	+	Silent	SNP	G	G	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	19	41012169	41012169	G	C	SNP	SPTBN4	ENST00000352632	human	ensembl	74_37	+1	known	silent	c.1692	p.G564	0.999	pirsf_Spectrin_bsu,pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pirsf_Spectrin_bsu,pfam_Spectrin_repeat,pfam_CH-domain,pfam_Pleckstrin_homology,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Pleckstrin_homology,prints_PH_dom-spectrin-type,pfscan_CH-domain,pfscan_Pleckstrin_homology	-	no_errors	SPTBN4	HGNC	ENSG00000160460				263	0	0	113	51	31.0976
SHKBP1	0	genome.wustl.edu	37	19	41086783	41086783	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	19	41086783	41086783	C	T	SNP	SHKBP1	ENST00000291842	human	ensembl	74_37	+1	known	missense	c.785	p.A262V	1.000	superfamily_WD40_repeat_dom	pfam_T1-type_BTB,pfam_WD40_repeat,superfamily_BTB/POZ_fold,superfamily_WD40_repeat_dom,smart_BTB/POZ-like,smart_WD40_repeat,pfscan_BTB/POZ-like	-	no_errors	SHKBP1	HGNC	ENSG00000160410				170	0	0	125	15	10.7143
SHKBP1	0	genome.wustl.edu	37	19	41089337	41089337	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	19	41089337	41089337	G	A	SNP	SHKBP1	ENST00000291842	human	ensembl	74_37	+1	known	missense	c.994	p.A332T	0.998	superfamily_WD40_repeat_dom	pfam_T1-type_BTB,pfam_WD40_repeat,superfamily_BTB/POZ_fold,superfamily_WD40_repeat_dom,smart_BTB/POZ-like,smart_WD40_repeat,pfscan_BTB/POZ-like	-	no_errors	SHKBP1	HGNC	ENSG00000160410				21	0	0	13	6	31.5789
ADCK4	0	genome.wustl.edu	37	19	41208524	41208524	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	19	41208524	41208524	C	T	SNP	ADCK4	ENST00000324464	human	ensembl	74_37	-1	known	missense	c.874	p.A292T	0.496	pfam_UbiB_dom,superfamily_Kinase-like_dom	pfam_UbiB_dom,superfamily_Kinase-like_dom	-	no_errors	ADCK4	HGNC	ENSG00000123815				184	0	0	126	19	13.1034
CYP2B7P1	0	genome.wustl.edu	37	19	41430241	41430241	+	RNA	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	19	41430241	41430241	C	T	SNP	CYP2B7P1	ENST00000599198	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	CYP2B7P1	HGNC	ENSG00000256612				169	0	0	88	34	27.8689
AXL	0	genome.wustl.edu	37	19	41762394	41762394	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	19	41762394	41762394	G	A	SNP	AXL	ENST00000301178	human	ensembl	74_37	+1	known	missense	c.2074	p.G692R	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Ig_V-set,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	AXL	HGNC	ENSG00000167601				282	0	0	121	64	34.5946
SIRT6	0	genome.wustl.edu	37	19	4179214	4179214	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	19	4179214	4179214	G	A	SNP	SIRT6	ENST00000337491	human	ensembl	74_37	-1	known	silent	c.264	p.S88	0.084	pfam_Sirtuin,pfscan_Ssirtuin_cat_dom	pfam_Sirtuin,pfscan_Ssirtuin_cat_dom	-	no_errors	SIRT6	HGNC	ENSG00000077463				27	0	0	20	3	13.0435
B9D2	0	genome.wustl.edu	37	19	41860690	41860690	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	19	41860690	41860690	C	T	SNP	B9D2	ENST00000243578	human	ensembl	74_37	-1	known	missense	c.443	p.R148H	1.000	pfam_B9_dom	pfam_B9_dom	-	no_errors	B9D2	HGNC	ENSG00000123810				131	0	0	42	31	42.4658
BCKDHA	0	genome.wustl.edu	37	19	41884359	41884359	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	19	41884359	41884359	T	C	SNP	BCKDHA	ENST00000595085	human	ensembl	74_37	+1	known	missense	c.145	p.F49L	0.311	NULL	pfam_DH_E1,pfam_Transketolase_N	-	no_errors	BCKDHA	HGNC	ENSG00000248098				173	0	0	74	37	33.3333
ATP1A3	0	genome.wustl.edu	37	19	42474440	42474440	+	Silent	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	19	42474440	42474440	C	T	SNP	ATP1A3	ENST00000302102	human	ensembl	74_37	-1	known	silent	c.2439	p.A813	0.887	pfam_ATPase_P-typ_cation-transptr_C,tigrfam_ATPase_P-typ_Na/K_IIC	pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_cation-transptr_C,pfam_HAD-like_dom,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_P-typ_cyto_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Na/K_IIC,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP1A3	HGNC	ENSG00000105409				80	0	0	42	17	28.8136
POU2F2	0	genome.wustl.edu	37	19	42599726	42599726	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	19	42599726	42599726	G	A	SNP	POU2F2	ENST00000342301	human	ensembl	74_37	-1	known	missense	c.925	p.R309C	1.000	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_POU	pfam_POU_specific,pfam_Homeobox_dom,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,smart_POU_specific,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_POU_specific,prints_POU,prints_TF_octamer	-	no_errors	POU2F2	HGNC	ENSG00000028277				61	0	0	22	12	35.2941
GSK3A	0	genome.wustl.edu	37	19	42736740	42736740	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	19	42736740	42736740	C	T	SNP	GSK3A	ENST00000222330	human	ensembl	74_37	-1	known	missense	c.1193	p.C398Y	1.000	pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	GSK3A	HGNC	ENSG00000105723				76	0	0	65	5	7.14286
MEGF8	0	genome.wustl.edu	37	19	42873096	42873096	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	19	42873096	42873096	T	C	SNP	MEGF8	ENST00000251268	human	ensembl	74_37	+1	known	missense	c.6583	p.C2195R	1.000	smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom	pfam_CUB_dom,pfam_EGF_laminin,pfam_Plexin_repeat,superfamily_Gal_Oxase/kelch_b-propeller,superfamily_CUB_dom,superfamily_Plexin-like_fold,smart_CUB_dom,smart_EG-like_dom,smart_Plexin-like_fold,smart_EGF-like_Ca-bd_dom,smart_EGF_laminin,pfscan_CUB_dom,pfscan_EG-like_dom,pfscan_EGF_laminin	-	no_errors	MEGF8	HGNC	ENSG00000105429				121	0	0	84	11	11.5789
MEGF8	0	genome.wustl.edu	37	19	42879938	42879938	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	19	42879938	42879938	C	A	SNP	MEGF8	ENST00000251268	human	ensembl	74_37	+1	known	missense	c.7549	p.P2517T	1.000	NULL	pfam_CUB_dom,pfam_EGF_laminin,pfam_Plexin_repeat,superfamily_Gal_Oxase/kelch_b-propeller,superfamily_CUB_dom,superfamily_Plexin-like_fold,smart_CUB_dom,smart_EG-like_dom,smart_Plexin-like_fold,smart_EGF-like_Ca-bd_dom,smart_EGF_laminin,pfscan_CUB_dom,pfscan_EG-like_dom,pfscan_EGF_laminin	-	no_errors	MEGF8	HGNC	ENSG00000105429				33	0	0	17	4	19.0476
PSG1	0	genome.wustl.edu	37	19	43382329	43382329	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	19	43382329	43382329	G	C	SNP	PSG1	ENST00000312439	human	ensembl	74_37	-1	known	missense	c.166	p.H56D	0.002	pfam_Ig_V-set,smart_Ig_sub	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	PSG1	HGNC	ENSG00000231924				554	0	0	365	35	8.75
SH3GL1	0	genome.wustl.edu	37	19	4361738	4361738	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	19	4361738	4361738	G	A	SNP	SH3GL1	ENST00000269886	human	ensembl	74_37	-1	known	silent	c.966	p.D322	0.247	pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain,prints_p67phox	pfam_BAR_dom,pfam_SH3_domain,pfam_BAR_dom-cont,pfam_SH3_2,superfamily_SH3_domain,smart_BAR_dom,smart_SH3_domain,pfscan_BAR_dom,pfscan_SH3_domain,prints_SH3_domain,prints_p67phox	-	no_errors	SH3GL1	HGNC	ENSG00000141985				99	0	0	35	27	43.5484
ZNF575	0	genome.wustl.edu	37	19	44039617	44039617	+	Silent	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	19	44039617	44039617	C	T	SNP	ZNF575	ENST00000314228	human	ensembl	74_37	+1	known	silent	c.516	p.T172	0.129	pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF575	HGNC	ENSG00000176472				95	0	0	57	27	32.1429
KCNN4	0	genome.wustl.edu	37	19	44278355	44278355	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	19	44278355	44278355	G	A	SNP	KCNN4	ENST00000262888	human	ensembl	74_37	-1	known	silent	c.672	p.S224	0.284	pfam_2pore_dom_K_chnl_dom	pfam_K_chnl_Ca-activ_SK,pfam_CaM-bd_dom,pfam_2pore_dom_K_chnl_dom,superfamily_CaM-bd_dom	-	no_errors	KCNN4	HGNC	ENSG00000104783				37	0	0	17	7	29.1667
CHAF1A	0	genome.wustl.edu	37	19	4433467	4433467	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	19	4433467	4433467	G	A	SNP	CHAF1A	ENST00000301280	human	ensembl	74_37	+1	known	silent	c.2604	p.S868	0.014	NULL	pfam_CAF1A	-	no_errors	CHAF1A	HGNC	ENSG00000167670				136	0	0	67	34	33.6634
ZNF221	0	genome.wustl.edu	37	19	44469186	44469186	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	19	44469186	44469186	C	T	SNP	ZNF221	ENST00000251269	human	ensembl	74_37	+1	known	nonsense	c.166	p.R56*	0.571	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF221	HGNC	ENSG00000159905				456	0	0	224	81	26.5574
ZNF234	0	genome.wustl.edu	37	19	44661316	44661316	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	19	44661316	44661316	T	C	SNP	ZNF234	ENST00000426739	human	ensembl	74_37	+1	known	missense	c.1147	p.Y383H	0.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF234	HGNC	ENSG00000263002				80	0	0	48	3	5.88235
ZNF235	0	genome.wustl.edu	37	19	44792006	44792006	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	19	44792006	44792006	A	G	SNP	ZNF235	ENST00000291182	human	ensembl	74_37	-1	known	missense	c.1582	p.S528P	0.494	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF235	HGNC	ENSG00000159917				186	0	0	93	58	38.4106
CBLC	0	genome.wustl.edu	37	19	45296787	45296787	+	Silent	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	19	45296787	45296787	C	T	SNP	CBLC	ENST00000270279	human	ensembl	74_37	+1	known	silent	c.1194	p.A398	0.024	NULL	pfam_Adaptor_Cbl_SH2-like,pfam_Adaptor_Cbl_EF_hand-like,pfam_Adaptor_Cbl_N_hlx,pfam_Znf_C3HC4_RING-type,superfamily_Adaptor_Cbl_N_hlx,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	CBLC	HGNC	ENSG00000142273				43	0	0	13	10	43.4783
LRG1	0	genome.wustl.edu	37	19	4538098	4538098	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	19	4538098	4538098	G	A	SNP	LRG1	ENST00000306390	human	ensembl	74_37	-1	known	missense	c.898	p.P300S	1.000	smart_Cys-rich_flank_reg_C	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	LRG1	HGNC	ENSG00000171236				198	0	0	127	8	5.92593
NKPD1	0	genome.wustl.edu	37	19	45655873	45655873	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	19	45655873	45655873	G	A	SNP	NKPD1	ENST00000317951	human	ensembl	74_37	-1	known	missense	c.1822	p.R608C	0.970	pfam_KAP_NTPase	pfam_KAP_NTPase	-	no_errors	NKPD1	HGNC	ENSG00000179846				24	0	0	6	9	60
FOSB	0	genome.wustl.edu	37	19	45975912	45975912	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	19	45975912	45975912	C	T	SNP	FOSB	ENST00000353609	human	ensembl	74_37	+1	known	missense	c.659	p.P220L	1.000	prints_Leuzip_Fos	pfam_bZIP,superfamily_TF_DNA-bd,smart_bZIP,pfscan_bZIP,prints_Leuzip_Fos	-	no_errors	FOSB	HGNC	ENSG00000125740				102	0	0	42	24	36.3636
FOSB	0	genome.wustl.edu	37	19	45976210	45976210	+	Silent	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	19	45976210	45976210	C	T	SNP	FOSB	ENST00000353609	human	ensembl	74_37	+1	known	silent	c.957	p.R319	1.000	NULL	pfam_bZIP,superfamily_TF_DNA-bd,smart_bZIP,pfscan_bZIP,prints_Leuzip_Fos	-	no_errors	FOSB	HGNC	ENSG00000125740				245	0	0	188	13	6.46766
GPR4	0	genome.wustl.edu	37	19	46094726	46094726	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	19	46094726	46094726	G	A	SNP	GPR4	ENST00000323040	human	ensembl	74_37	-1	known	silent	c.399	p.T133	0.479	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_GPR4_orph	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_GPR4_orph,prints_GPCR_Rhodpsn,prints_Psych_rcpt	-	no_errors	GPR4	HGNC	ENSG00000177464				152	0	0	76	44	36.6667
FOXA3	0	genome.wustl.edu	37	19	46375539	46375539	+	Silent	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	19	46375539	46375539	C	T	SNP	FOXA3	ENST00000302177	human	ensembl	74_37	+1	known	silent	c.276	p.Y92	0.007	pfam_Fork-head_N	pfam_TF_fork_head,pfam_Fork-head_N,pfam_Forkhead_box_C,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXA3	HGNC	ENSG00000170608				72	0	0	35	11	23.913
CCDC8	0	genome.wustl.edu	37	19	46915764	46915764	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	19	46915764	46915764	C	T	SNP	CCDC8	ENST00000307522	human	ensembl	74_37	-1	known	missense	c.304	p.A102T	0.997	NULL	NULL	-	no_errors	CCDC8	HGNC	ENSG00000169515				213	0	0	100	36	26.4706
ARHGAP35	0	genome.wustl.edu	37	19	47425365	47425365	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	19	47425365	47425365	C	T	SNP	ARHGAP35	ENST00000404338	human	ensembl	74_37	+1	known	nonsense	c.3433	p.R1145*	1.000	NULL	pfam_RhoGAP_dom,pfam_Small_GTPase,pfam_FF_domain,superfamily_Rho_GTPase_activation_prot,superfamily_P-loop_NTPase,superfamily_FF_domain,smart_FF_domain,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP35	HGNC	ENSG00000160007				68	0	0	28	13	31.7073
ZC3H4	0	genome.wustl.edu	37	19	47570574	47570574	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	19	47570574	47570574	A	G	SNP	ZC3H4	ENST00000253048	human	ensembl	74_37	-1	known	missense	c.2951	p.L984P	1.000	NULL	pfam_Znf_CCCH,smart_Znf_CCCH	-	no_errors	ZC3H4	HGNC	ENSG00000130749				279	0	0	149	15	9.14634
FEM1A	0	genome.wustl.edu	37	19	4792751	4792751	+	Silent	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	19	4792751	4792751	A	G	SNP	FEM1A	ENST00000269856	human	ensembl	74_37	+1	known	silent	c.885	p.E295	0.969	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	FEM1A	HGNC	ENSG00000141965				107	0	0	71	32	31.068
SLC8A2	0	genome.wustl.edu	37	19	47969099	47969099	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	19	47969099	47969099	C	T	SNP	SLC8A2	ENST00000236877	human	ensembl	74_37	-1	known	missense	c.562	p.E188K	1.000	pfam_NaCa_Exmemb,tigrfam_Na_Ca_Ex	pfam_Calx_beta,pfam_NaCa_Exmemb,smart_Calx_beta,prints_Na_Ca_Ex,tigrfam_Na_Ca_Ex	-	no_errors	SLC8A2	HGNC	ENSG00000118160				64	0	0	33	11	25
TICAM1	0	genome.wustl.edu	37	19	4817394	4817394	+	Silent	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	19	4817394	4817394	C	T	SNP	TICAM1	ENST00000248244	human	ensembl	74_37	-1	known	silent	c.996	p.T332	0.000	pirsf_TICAM1	superfamily_TIR_dom,pirsf_TICAM1	-	no_errors	TICAM1	HGNC	ENSG00000127666				153	0	0	73	32	30.4762
GLTSCR2	0	genome.wustl.edu	37	19	48254217	48254217	+	Silent	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	19	48254217	48254217	C	T	SNP	GLTSCR2	ENST00000246802	human	ensembl	74_37	+1	known	silent	c.451	p.L151	0.998	pfam_P60-like,pirsf_Gltscr2	pfam_P60-like,pirsf_Gltscr2	-	no_errors	GLTSCR2	HGNC	ENSG00000105373				22	0	0	5	2	28.5714
TMEM143	0	genome.wustl.edu	37	19	48863431	48863431	+	Silent	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	19	48863431	48863431	T	C	SNP	TMEM143	ENST00000293261	human	ensembl	74_37	-1	known	silent	c.267	p.E89	0.999	NULL	pfam_DUF3754	-	no_errors	TMEM143	HGNC	ENSG00000161558				60	0	0	33	8	19.5122
KCNJ14	0	genome.wustl.edu	37	19	48965192	48965192	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	19	48965192	48965192	G	A	SNP	KCNJ14	ENST00000342291	human	ensembl	74_37	+1	known	missense	c.211	p.A71T	1.000	pfam_K_chnl_inward-rec_Kir,pirsf_K_chnl_inward-rec_Kir	pfam_K_chnl_inward-rec_Kir,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir	-	no_errors	KCNJ14	HGNC	ENSG00000182324				45	0	0	18	8	30.7692
TULP2	0	genome.wustl.edu	37	19	49400605	49400605	+	Silent	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	19	49400605	49400605	C	T	SNP	TULP2	ENST00000221399	human	ensembl	74_37	-1	known	silent	c.81	p.Q27	1.000	prints_Tubby_N	pfam_Tubby_C,superfamily_Tubby_C-like,prints_Tubby_C,prints_Tubby_N	-	no_errors	TULP2	HGNC	ENSG00000104804				46	0	0	29	4	12.1212
CGB8	0	genome.wustl.edu	37	19	49551986	49551986	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	19	49551986	49551986	A	G	SNP	CGB8	ENST00000448456	human	ensembl	74_37	-1	known	missense	c.11	p.F4S	0.946	NULL	pfam_Cys_knot,smart_Gonadotropin_bsu	-	no_errors	CGB8	HGNC	ENSG00000213030				396	1	0.251889	283	23	7.51634
SLC17A7	0	genome.wustl.edu	37	19	49934663	49934663	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	19	49934663	49934663	G	A	SNP	SLC17A7	ENST00000221485	human	ensembl	74_37	-1	known	missense	c.1193	p.S398L	1.000	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC17A7	HGNC	ENSG00000104888				94	0	0	66	8	10.8108
FUZ	0	genome.wustl.edu	37	19	50310496	50310496	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	19	50310496	50310496	A	C	SNP	FUZ	ENST00000313777	human	ensembl	74_37	-1	known	missense	c.1169	p.L390R	1.000	NULL	NULL	-	no_errors	FUZ	HGNC	ENSG00000010361				71	0	0	44	13	22.807
ENSG00000268047	0	genome.wustl.edu	37	19	50357836	50357836	+	RNA	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	19	50357836	50357836	T	C	SNP	ENSG00000268047	ENST00000601211	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	AC018766.6	Clone_based_vega_gene	ENSG00000268047				84	0	0	32	15	31.9149
ATF5	0	genome.wustl.edu	37	19	50436306	50436306	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	19	50436306	50436306	T	C	SNP	ATF5	ENST00000423777	human	ensembl	74_37	+1	known	missense	c.806	p.I269T	0.998	smart_bZIP,pfscan_bZIP	pfam_bZIP,smart_bZIP,pfscan_bZIP	-	no_errors	ATF5	HGNC	ENSG00000169136				95	0	0	33	13	28.2609
MYH14	0	genome.wustl.edu	37	19	50784930	50784930	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	19	50784930	50784930	G	A	SNP	MYH14	ENST00000262269	human	ensembl	74_37	+1	known	missense	c.4370	p.R1457Q	0.847	pfam_Myosin_tail	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH14	HGNC	ENSG00000105357				29	0	0	19	7	26.9231
SHANK1	0	genome.wustl.edu	37	19	51169816	51169816	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	19	51169816	51169816	G	A	SNP	SHANK1	ENST00000391814	human	ensembl	74_37	-1	known	missense	c.5425	p.R1809C	0.704	NULL	pfam_Ankyrin_rpt,pfam_SAM_type1,pfam_SH3_2,pfam_SAM_2,pfam_PDZ,pfam_SH3_domain,superfamily_Ankyrin_rpt-contain_dom,superfamily_PDZ,superfamily_SH3_domain,superfamily_SAM/pointed,smart_Ankyrin_rpt,smart_SH3_domain,smart_PDZ,smart_SAM,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_PDZ,pfscan_SAM,pfscan_SH3_domain	-	no_errors	SHANK1	HGNC	ENSG00000161681				23	0	0	9	9	50
SHANK1	0	genome.wustl.edu	37	19	51171765	51171765	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	19	51171765	51171765	T	C	SNP	SHANK1	ENST00000391814	human	ensembl	74_37	-1	known	missense	c.3476	p.N1159S	1.000	NULL	pfam_Ankyrin_rpt,pfam_SAM_type1,pfam_SH3_2,pfam_SAM_2,pfam_PDZ,pfam_SH3_domain,superfamily_Ankyrin_rpt-contain_dom,superfamily_PDZ,superfamily_SH3_domain,superfamily_SAM/pointed,smart_Ankyrin_rpt,smart_SH3_domain,smart_PDZ,smart_SAM,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_PDZ,pfscan_SAM,pfscan_SH3_domain	-	no_errors	SHANK1	HGNC	ENSG00000161681				54	0	0	23	8	25.8065
SHANK1	0	genome.wustl.edu	37	19	51201124	51201124	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	19	51201124	51201124	T	C	SNP	SHANK1	ENST00000391814	human	ensembl	74_37	-1	known	missense	c.1837	p.N613D	0.043	superfamily_SH3_domain,pfscan_SH3_domain	pfam_Ankyrin_rpt,pfam_SAM_type1,pfam_SH3_2,pfam_SAM_2,pfam_PDZ,pfam_SH3_domain,superfamily_Ankyrin_rpt-contain_dom,superfamily_PDZ,superfamily_SH3_domain,superfamily_SAM/pointed,smart_Ankyrin_rpt,smart_SH3_domain,smart_PDZ,smart_SAM,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_PDZ,pfscan_SAM,pfscan_SH3_domain	-	no_errors	SHANK1	HGNC	ENSG00000161681				64	0	0	42	6	12.5
CTU1	0	genome.wustl.edu	37	19	51602381	51602381	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	19	51602381	51602381	T	C	SNP	CTU1	ENST00000421832	human	ensembl	74_37	-1	known	missense	c.524	p.D175G	1.000	pfam_tRNA-lysidine/thiocyt_synth,pirsf_2-thiocytidine_tRNA_synth_TtcA	pfam_tRNA-lysidine/thiocyt_synth,pirsf_2-thiocytidine_tRNA_synth_TtcA	-	no_errors	CTU1	HGNC	ENSG00000142544				22	0	0	8	4	33.3333
HAS1	0	genome.wustl.edu	37	19	52216817	52216817	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	19	52216817	52216817	G	A	SNP	HAS1	ENST00000601714	human	ensembl	74_37	-1	known	missense	c.1621	p.R541C	0.369	NULL	pfam_Chitin_synth_fng,pfam_Glyco_trans_2	-	no_errors	HAS1	HGNC	ENSG00000105509				11	0	0	2	4	66.6667
ZNF577	0	genome.wustl.edu	37	19	52381737	52381737	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	19	52381737	52381737	C	T	SNP	ZNF577	ENST00000301399	human	ensembl	74_37	-1	known	missense	c.92	p.G31D	0.007	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF577	HGNC	ENSG00000161551				145	0	0	90	27	23.0769
ZNF480	0	genome.wustl.edu	37	19	52826015	52826015	+	Silent	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	19	52826015	52826015	T	C	SNP	ZNF480	ENST00000468240	human	ensembl	74_37	+1	known	silent	c.1512	p.I504	0.311	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF480	HGNC	ENSG00000198464				141	0	0	82	19	18.8119
ZNF600	0	genome.wustl.edu	37	19	53270656	53270656	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	19	53270656	53270656	G	A	SNP	ZNF600	ENST00000338230	human	ensembl	74_37	-1	known	missense	c.353	p.A118V	0.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF600	HGNC	ENSG00000189190				261	0	0	128	64	33.3333
ZNF845	0	genome.wustl.edu	37	19	53854916	53854916	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	19	53854916	53854916	A	G	SNP	ZNF845	ENST00000458035	human	ensembl	74_37	+1	known	missense	c.988	p.N330D	0.020	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF845	HGNC	ENSG00000213799				204	0	0	113	20	15.0376
ZNF761	0	genome.wustl.edu	37	19	53957988	53957988	+	RNA	SNP	T	T	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	19	53957988	53957988	T	A	SNP	ZNF761	ENST00000334095	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ZNF761	HGNC	ENSG00000160336				160	0	0	81	28	25.6881
ZNF761	0	genome.wustl.edu	37	19	53959361	53959361	+	RNA	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	19	53959361	53959361	A	G	SNP	ZNF761	ENST00000334095	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ZNF761	HGNC	ENSG00000160336				256	0	0	165	22	11.7647
MIR519A1	0	genome.wustl.edu	37	19	54255723	54255723	+	RNA	SNP	G	G	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	19	54255723	54255723	G	T	SNP	MIR519A1	ENST00000385257	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.003	-	-	-	no_errors	MIR519A1	HGNC	ENSG00000207992				178	0	0	115	10	8
PRKCG	0	genome.wustl.edu	37	19	54401306	54401306	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	19	54401306	54401306	C	T	SNP	PRKCG	ENST00000540413	human	ensembl	74_37	+1	known	missense	c.1033	p.R345C	1.000	pirsf_Protein_kinase_C_a/b/g	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_C2_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_C2_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_C2_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Protein_kinase_C_a/b/g,prints_DAG/PE-bd,prints_C2_dom,pfscan_C2_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_dom	-	no_errors	PRKCG	HGNC	ENSG00000126583				133	0	0	70	23	24.7312
LENG1	0	genome.wustl.edu	37	19	54659550	54659550	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	19	54659550	54659550	T	C	SNP	LENG1	ENST00000222224	human	ensembl	74_37	-1	known	missense	c.704	p.E235G	0.828	NULL	NULL	-	no_errors	LENG1	HGNC	ENSG00000105617				51	0	0	19	6	24
LILRB2	0	genome.wustl.edu	37	19	54783435	54783435	+	Silent	SNP	G	G	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	19	54783435	54783435	G	T	SNP	LILRB2	ENST00000391749	human	ensembl	74_37	-1	known	silent	c.423	p.T141	0.049	NULL	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	LILRB2	HGNC	ENSG00000131042				195	0	0	135	40	22.8571
LENG8	0	genome.wustl.edu	37	19	54966602	54966602	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	19	54966602	54966602	A	G	SNP	LENG8	ENST00000326764	human	ensembl	74_37	+1	known	missense	c.881	p.K294R	1.000	NULL	pfam_SAC3/GANP/Nin1/mts3/eIF-3-p25	-	no_errors	LENG8	HGNC	ENSG00000167615				133	0	0	88	6	6.38298
CDC42EP5	0	genome.wustl.edu	37	19	54976609	54976609	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	19	54976609	54976609	G	A	SNP	CDC42EP5	ENST00000301200	human	ensembl	74_37	-1	known	silent	c.123	p.D41	1.000	pfam_CRIB_dom,smart_CRIB_dom	pfam_CRIB_dom,smart_CRIB_dom,pfscan_CRIB_dom	-	no_errors	CDC42EP5	HGNC	ENSG00000167617				13	0	0	8	6	42.8571
LILRA2	0	genome.wustl.edu	37	19	55085865	55085865	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	19	55085865	55085865	G	T	SNP	LILRA2	ENST00000251377	human	ensembl	74_37	+1	known	missense	c.168	p.E56D	0.000	smart_Ig_sub,smart_Ig_sub2,pirsf_A1B_glyco/leuk_Ig-like_rcpt,pfscan_Ig-like_dom	smart_Ig_sub,smart_Ig_sub2,pirsf_A1B_glyco/leuk_Ig-like_rcpt,pfscan_Ig-like_dom	-	no_errors	LILRA2	HGNC	ENSG00000239998				181	0	0	84	36	30
PPP1R12C	0	genome.wustl.edu	37	19	55603866	55603866	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	19	55603866	55603866	C	T	SNP	PPP1R12C	ENST00000263433	human	ensembl	74_37	-1	known	missense	c.1999	p.D667N	0.001	pirsf_Pase-1_reg_su_12A/B/C_euk	pirsf_Pase-1_reg_su_12A/B/C_euk,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,prints_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	PPP1R12C	HGNC	ENSG00000125503				33	0	0	23	8	25.8065
HSPBP1	0	genome.wustl.edu	37	19	55773978	55773978	+	Nonstop_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	19	55773978	55773978	A	G	SNP	HSPBP1	ENST00000255631	human	ensembl	74_37	-1	known	nonstop	c.1078	p.*360R	1.000	NULL	superfamily_ARM-type_fold	-	no_errors	HSPBP1	HGNC	ENSG00000133265				44	0	0	16	10	38.4615
NLRP9	0	genome.wustl.edu	37	19	56223792	56223792	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	19	56223792	56223792	C	T	SNP	NLRP9	ENST00000332836	human	ensembl	74_37	-1	known	missense	c.2666	p.C889Y	0.000	smart_Leu-rich_rpt_RNase_inh_sub-typ	pfam_DAPIN,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP9	HGNC	ENSG00000185792				149	0	0	77	32	29.3578
NLRP4	0	genome.wustl.edu	37	19	56368987	56368987	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	19	56368987	56368987	G	A	SNP	NLRP4	ENST00000587891	human	ensembl	74_37	+1	known	missense	c.3	p.M1I	0.000	NULL	superfamily_P-loop_NTPase,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase	-	no_errors	NLRP4	HGNC	ENSG00000160505				75	0	0	39	12	23.5294
LONP1	0	genome.wustl.edu	37	19	5700824	5700824	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	19	5700824	5700824	C	T	SNP	LONP1	ENST00000360614	human	ensembl	74_37	-1	known	missense	c.1482	p.M494I	1.000	pfam_DNA_helicase_Holl-junc_RuvB_N,pfam_Prk_AAA_dom,superfamily_P-loop_NTPase,tigrfam_Lon_bac/euk-typ	pfam_Pept_S16_C,pfam_Pept_S16_N,pfam_ATPase_AAA_core,pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA-2,pfam_DNA_helicase_Holl-junc_RuvB_N,pfam_Prk_AAA_dom,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_P-loop_NTPase,superfamily_PUA-like_domain,smart_Pept_S16_N,smart_AAA+_ATPase,tigrfam_Lon_bac/euk-typ	-	no_errors	LONP1	HGNC	ENSG00000196365				143	0	0	95	7	6.86275
ZNF835	0	genome.wustl.edu	37	19	57175344	57175344	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	19	57175344	57175344	T	C	SNP	ZNF835	ENST00000537055	human	ensembl	74_37	-1	known	missense	c.1223	p.H408R	0.977	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF835	HGNC	ENSG00000127903				108	1	0.917431	64	5	7.24638
ZNF835	0	genome.wustl.edu	37	19	57175421	57175421	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	19	57175421	57175421	G	A	SNP	ZNF835	ENST00000537055	human	ensembl	74_37	-1	known	silent	c.1146	p.L382	0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF835	HGNC	ENSG00000127903				70	0	0	34	12	26.087
ZNF460	0	genome.wustl.edu	37	19	57802980	57802980	+	Silent	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	19	57802980	57802980	T	C	SNP	ZNF460	ENST00000360338	human	ensembl	74_37	+1	known	silent	c.1071	p.I357	0.174	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF460	HGNC	ENSG00000197714				121	0	0	88	13	12.8713
PRR22	0	genome.wustl.edu	37	19	5784045	5784045	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	19	5784045	5784045	G	A	SNP	PRR22	ENST00000419421	human	ensembl	74_37	-1	known	silent	c.213	p.C71	1.000	NULL	NULL	-	no_errors	PRR22	HGNC	ENSG00000212123				123	1	0.806452	69	46	40
ZNF773	0	genome.wustl.edu	37	19	58017804	58017804	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	19	58017804	58017804	A	G	SNP	ZNF773	ENST00000282292	human	ensembl	74_37	+1	known	missense	c.341	p.Q114R	0.002	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF773	HGNC	ENSG00000152439				174	0	0	107	7	6.14035
ZNF814	0	genome.wustl.edu	37	19	58384561	58384561	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	19	58384561	58384561	C	T	SNP	ZNF814	ENST00000435989	human	ensembl	74_37	-1	known	missense	c.2197	p.A733T	0.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF814	HGNC	ENSG00000204514				66	0	0	24	16	40
ZNF606	0	genome.wustl.edu	37	19	58490719	58490719	+	Silent	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	19	58490719	58490719	A	G	SNP	ZNF606	ENST00000341164	human	ensembl	74_37	-1	known	silent	c.1329	p.L443	0.201	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF606	HGNC	ENSG00000166704				81	0	0	25	18	41.8605
ZNF135	0	genome.wustl.edu	37	19	58578892	58578892	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	19	58578892	58578892	T	A	SNP	ZNF135	ENST00000401053	human	ensembl	74_37	+1	known	missense	c.1112	p.I371N	0.972	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF135	HGNC	ENSG00000176293				89	0	0	47	5	9.61538
ZNF584	0	genome.wustl.edu	37	19	58926931	58926931	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	19	58926931	58926931	G	T	SNP	ZNF584	ENST00000306910	human	ensembl	74_37	+1	known	missense	c.210	p.E70D	0.089	superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF584	HGNC	ENSG00000171574				171	0	0	84	39	31.7073
C3	0	genome.wustl.edu	37	19	6707497	6707497	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	19	6707497	6707497	G	A	SNP	C3	ENST00000245907	human	ensembl	74_37	-1	known	missense	c.2027	p.T676M	0.717	superfamily_Anaphylatoxin_comp_syst	pfam_A2M_comp,pfam_A-macroglobulin_rcpt-bd,pfam_Macroglobln_a2,pfam_Netrin_module_non-TIMP,pfam_A2M_N_2,pfam_A2M_N,pfam_MacrogloblnA2_thiol-ester-bond,pfam_Anaphylatoxin/fibulin,superfamily_Terpenoid_cyclase/PrenylTrfase,superfamily_TIMP-like_OB-fold,superfamily_A-macroglobulin_rcpt-bd,superfamily_Anaphylatoxin_comp_syst,smart_Anaphylatoxin/fibulin,smart_Netrin_module_non-TIMP,prints_Anaphylatoxn_comp_syst_dom,pfscan_Anaphylatoxin/fibulin,pfscan_Netrin_domain	-	no_errors	C3	HGNC	ENSG00000125730				162	1	0.613497	78	37	32.1739
ZNF557	0	genome.wustl.edu	37	19	7075715	7075715	+	Silent	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	19	7075715	7075715	C	T	SNP	ZNF557	ENST00000252840	human	ensembl	74_37	+1	known	silent	c.81	p.G27	0.017	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF557	HGNC	ENSG00000130544				209	0	0	108	36	25
PALM	0	genome.wustl.edu	37	19	736048	736048	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	19	736048	736048	A	G	SNP	PALM	ENST00000338448	human	ensembl	74_37	+1	known	missense	c.472	p.T158A	0.017	pfam_Paralemmin	pfam_Paralemmin	-	no_errors	PALM	HGNC	ENSG00000099864				394	0	0	262	28	9.65517
MCOLN1	0	genome.wustl.edu	37	19	7589892	7589892	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	19	7589892	7589892	C	T	SNP	MCOLN1	ENST00000264079	human	ensembl	74_37	+1	known	missense	c.77	p.A26V	0.000	NULL	pfam_PKD1_2_channel,superfamily_Glycoside_hydrolase_SF	-	no_errors	MCOLN1	HGNC	ENSG00000090674				62	0	0	37	7	15.9091
CAMSAP3	0	genome.wustl.edu	37	19	7677000	7677000	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	19	7677000	7677000	C	T	SNP	CAMSAP3	ENST00000446248	human	ensembl	74_37	+1	known	missense	c.1702	p.P568S	0.000	NULL	pfam_CKK_domain,pfam_CAMSAP_CH,pfam_CH-domain,superfamily_PRC_barrel-like,superfamily_CH-domain	-	no_errors	CAMSAP3	HGNC	ENSG00000076826				75	0	0	40	6	13.0435
ELAVL1	0	genome.wustl.edu	37	19	8028431	8028431	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	19	8028431	8028431	T	C	SNP	ELAVL1	ENST00000351593	human	ensembl	74_37	-1	known	missense	c.998	p.N333S	1.000	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,prints_Hud_Sxl_RNA,tigrfam_ELAD_HUD_SF	-	no_errors	ELAVL1	HGNC	ENSG00000066044				237	1	0.420168	118	46	28.0488
FBN3	0	genome.wustl.edu	37	19	8137979	8137979	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	19	8137979	8137979	G	A	SNP	FBN3	ENST00000270509	human	ensembl	74_37	-1	known	silent	c.7905	p.G2635	1.000	pfam_EGF-like_Ca-bd_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pirsf_FBN	pfam_EGF-like_Ca-bd_dom,pfam_TB_dom,pfam_EG-like_dom,superfamily_TB_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pirsf_FBN,pfscan_EG-like_dom	-	no_errors	FBN3	HGNC	ENSG00000142449				193	0	0	109	45	29.2208
FBN3	0	genome.wustl.edu	37	19	8196449	8196449	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	19	8196449	8196449	G	A	SNP	FBN3	ENST00000270509	human	ensembl	74_37	-1	known	missense	c.1979	p.A660V	1.000	pfam_TB_dom,superfamily_TB_dom,pirsf_FBN	pfam_EGF-like_Ca-bd_dom,pfam_TB_dom,pfam_EG-like_dom,superfamily_TB_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pirsf_FBN,pfscan_EG-like_dom	-	no_errors	FBN3	HGNC	ENSG00000142449				218	0	0	98	40	28.9855
AZU1	0	genome.wustl.edu	37	19	828274	828274	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	19	828274	828274	C	T	SNP	AZU1	ENST00000233997	human	ensembl	74_37	+1	known	missense	c.103	p.P35S	0.000	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	AZU1	HGNC	ENSG00000172232				178	0	0	92	29	23.9669
ANGPTL4	0	genome.wustl.edu	37	19	8436327	8436327	+	Silent	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	19	8436327	8436327	C	T	SNP	ANGPTL4	ENST00000301455	human	ensembl	74_37	+1	known	silent	c.960	p.S320	0.000	pfam_Fibrinogen_a/b/g_C_dom,superfamily_Fibrinogen_a/b/g_C_dom,smart_Fibrinogen_a/b/g_C_dom	pfam_Fibrinogen_a/b/g_C_dom,superfamily_Fibrinogen_a/b/g_C_dom,smart_Fibrinogen_a/b/g_C_dom	-	no_errors	ANGPTL4	HGNC	ENSG00000167772				102	0	0	43	20	31.746
PRAM1	0	genome.wustl.edu	37	19	8563852	8563852	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	19	8563852	8563852	G	A	SNP	PRAM1	ENST00000423345	human	ensembl	74_37	-1	known	silent	c.840	p.D280	0.000	NULL	superfamily_SH3_domain	-	no_errors	PRAM1	HGNC	ENSG00000133246				111	0	0	64	9	12.3288
ADAMTS10	0	genome.wustl.edu	37	19	8668717	8668717	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	19	8668717	8668717	C	T	SNP	ADAMTS10	ENST00000270328	human	ensembl	74_37	-1	known	missense	c.487	p.G163S	0.234	pfam_Peptidase_M12B_N	pfam_Peptidase_M12B_N,pfam_Peptidase_M12B,pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS10	HGNC	ENSG00000142303				98	0	0	49	23	31.9444
MUC16	0	genome.wustl.edu	37	19	9048747	9048747	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	19	9048747	9048747	T	C	SNP	MUC16	ENST00000397910	human	ensembl	74_37	-1	known	missense	c.32884	p.T10962A	0.000	NULL	pfam_SEA_dom,smart_SEA_dom,pfscan_SEA_dom	-	no_errors	MUC16	HGNC	ENSG00000181143				211	0	0	111	44	28.3871
MUC16	0	genome.wustl.edu	37	19	9056901	9056901	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	19	9056901	9056901	G	A	SNP	MUC16	ENST00000397910	human	ensembl	74_37	-1	known	missense	c.30545	p.T10182I	0.000	NULL	pfam_SEA_dom,smart_SEA_dom,pfscan_SEA_dom	-	no_errors	MUC16	HGNC	ENSG00000181143				106	0	0	59	22	27.1605
MUC16	0	genome.wustl.edu	37	19	9063940	9063940	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	19	9063940	9063940	A	T	SNP	MUC16	ENST00000397910	human	ensembl	74_37	-1	known	missense	c.23506	p.S7836T	0.000	NULL	pfam_SEA_dom,smart_SEA_dom,pfscan_SEA_dom	-	no_errors	MUC16	HGNC	ENSG00000181143				124	0	0	88	5	5.37634
MUC16	0	genome.wustl.edu	37	19	9066859	9066859	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	19	9066859	9066859	T	C	SNP	MUC16	ENST00000397910	human	ensembl	74_37	-1	known	missense	c.20587	p.T6863A	0.000	NULL	pfam_SEA_dom,smart_SEA_dom,pfscan_SEA_dom	-	no_errors	MUC16	HGNC	ENSG00000181143				213	0	0	83	67	44.6667
MUC16	0	genome.wustl.edu	37	19	9075275	9075275	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	19	9075275	9075275	T	C	SNP	MUC16	ENST00000397910	human	ensembl	74_37	-1	known	missense	c.12171	p.I4057M	0.000	NULL	pfam_SEA_dom,smart_SEA_dom,pfscan_SEA_dom	-	no_errors	MUC16	HGNC	ENSG00000181143				272	0	0	126	69	35.3846
MUC16	0	genome.wustl.edu	37	19	9084585	9084585	+	Silent	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	19	9084585	9084585	T	C	SNP	MUC16	ENST00000397910	human	ensembl	74_37	-1	known	silent	c.7230	p.S2410	0.132	NULL	pfam_SEA_dom,smart_SEA_dom,pfscan_SEA_dom	-	no_errors	MUC16	HGNC	ENSG00000181143				89	0	0	29	19	39.5833
ZNF317	0	genome.wustl.edu	37	19	9270967	9270967	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	19	9270967	9270967	T	C	SNP	ZNF317	ENST00000247956	human	ensembl	74_37	+1	known	missense	c.646	p.Y216H	0.018	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF317	HGNC	ENSG00000130803				82	0	0	52	15	22.3881
ZNF559	0	genome.wustl.edu	37	19	9452554	9452554	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	19	9452554	9452554	G	A	SNP	ZNF559	ENST00000393883	human	ensembl	74_37	+1	known	missense	c.427	p.G143R	0.282	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF559	HGNC	ENSG00000188321				222	0	0	111	47	29.7468
NPAS2	0	genome.wustl.edu	37	2	101591324	101591324	+	Silent	SNP	G	G	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	101591324	101591324	G	T	SNP	NPAS2	ENST00000542504	human	ensembl	74_37	+1	known	silent	c.1395	p.S465	0.000	NULL	pfam_PAS_fold_3,pfam_PAS_fold,pfam_bHLH_dom,superfamily_PAS,superfamily_bHLH_dom,smart_bHLH_dom,smart_PAS,smart_PAC,prints_Nuc_translocat,pfscan_PAS,pfscan_bHLH_dom,tigrfam_PAS	-	no_errors	NPAS2	HGNC	ENSG00000170485				104	1	0.952381	80	6	6.97674
IL1R1	0	genome.wustl.edu	37	2	102781763	102781763	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	102781763	102781763	A	G	SNP	IL1R1	ENST00000233946	human	ensembl	74_37	+1	known	missense	c.485	p.K162R	1.000	smart_Ig_sub,pfscan_Ig-like_dom	pfam_TIR_dom,pfam_Ig_I-set,superfamily_TIR_dom,smart_Ig_sub,smart_TIR_dom,pfscan_TIR_dom,pfscan_Ig-like_dom,prints_IL-1_rcpt_I-typ,prints_IL-1_rcpt_I/II-typ	-	no_errors	IL1R1	HGNC	ENSG00000115594				49	0	0	49	4	7.54717
IL1R1	0	genome.wustl.edu	37	2	102782603	102782603	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	102782603	102782603	C	T	SNP	IL1R1	ENST00000233946	human	ensembl	74_37	+1	known	missense	c.517	p.H173Y	0.000	smart_Ig_sub,pfscan_Ig-like_dom,prints_IL-1_rcpt_I-typ	pfam_TIR_dom,pfam_Ig_I-set,superfamily_TIR_dom,smart_Ig_sub,smart_TIR_dom,pfscan_TIR_dom,pfscan_Ig-like_dom,prints_IL-1_rcpt_I-typ,prints_IL-1_rcpt_I/II-typ	-	no_errors	IL1R1	HGNC	ENSG00000115594				138	0	0	62	36	36.7347
POU3F3	0	genome.wustl.edu	37	2	105472990	105472990	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	105472990	105472990	C	T	SNP	POU3F3	ENST00000361360	human	ensembl	74_37	+1	known	missense	c.1022	p.A341V	1.000	pfam_POU_specific,superfamily_Lambda_DNA-bd_dom,smart_POU_specific,pirsf_Transcription_factor_POU,pfscan_POU_specific,prints_POU	pfam_POU_specific,pfam_Homeobox_dom,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,smart_POU_specific,smart_Homeobox_dom,pirsf_Transcription_factor_POU,pfscan_Homeobox_dom,pfscan_POU_specific,prints_POU	-	no_errors	POU3F3	HGNC	ENSG00000198914				112	0	0	67	27	28.7234
HPCAL1	0	genome.wustl.edu	37	2	10560033	10560033	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	10560033	10560033	G	A	SNP	HPCAL1	ENST00000307845	human	ensembl	74_37	+1	known	silent	c.150	p.K50	1.000	NULL	pfam_EF_hand_dom,pfam_SPARC/Testican_Ca-bd-dom,smart_EF_hand_dom,pfscan_EF_hand_dom,prints_Recoverin	-	no_errors	HPCAL1	HGNC	ENSG00000115756				99	0	0	41	20	32.7869
MRPS9	0	genome.wustl.edu	37	2	105716151	105716151	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	105716151	105716151	C	T	SNP	MRPS9	ENST00000258455	human	ensembl	74_37	+1	known	missense	c.1123	p.R375C	0.874	pfam_Ribosomal_S9,superfamily_Ribosomal_S5_D2-typ_fold	pfam_Ribosomal_S9,superfamily_Ribosomal_S5_D2-typ_fold	-	no_errors	MRPS9	HGNC	ENSG00000135972				116	0	0	44	29	39.726
LIMS1	0	genome.wustl.edu	37	2	109292351	109292351	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	109292351	109292351	A	G	SNP	LIMS1	ENST00000542845	human	ensembl	74_37	+1	known	missense	c.698	p.D233G	1.000	pfam_Znf_LIM,smart_Znf_LIM,pirsf_PINCH	pfam_Znf_LIM,smart_Znf_LIM,pirsf_PINCH,pfscan_Znf_LIM	-	no_errors	LIMS1	HGNC	ENSG00000169756				131	0	0	98	8	7.54717
RANBP2	0	genome.wustl.edu	37	2	109382784	109382784	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	109382784	109382784	A	G	SNP	RANBP2	ENST00000283195	human	ensembl	74_37	+1	known	missense	c.5789	p.Q1930R	0.934	NULL	pfam_Ran_bind_dom,pfam_Znf_RanBP2,pfam_IR1-M,pfam_Cyclophilin-like_PPIase_dom,pfam_TPR_1,superfamily_Cyclophilin-like_PPIase_dom,smart_TPR_repeat,smart_Ran_bind_dom,smart_Znf_RanBP2,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_Znf_RanBP2,pfscan_Cyclophilin-like_PPIase_dom,pfscan_Ran_bind_dom,prints_Cyclophilin-like_PPIase_dom	-	no_errors	RANBP2	HGNC	ENSG00000153201				403	0	0	209	54	20.5323
RANBP2	0	genome.wustl.edu	37	2	109382791	109382791	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	109382791	109382791	T	G	SNP	RANBP2	ENST00000283195	human	ensembl	74_37	+1	known	missense	c.5796	p.N1932K	0.048	NULL	pfam_Ran_bind_dom,pfam_Znf_RanBP2,pfam_IR1-M,pfam_Cyclophilin-like_PPIase_dom,pfam_TPR_1,superfamily_Cyclophilin-like_PPIase_dom,smart_TPR_repeat,smart_Ran_bind_dom,smart_Znf_RanBP2,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_Znf_RanBP2,pfscan_Cyclophilin-like_PPIase_dom,pfscan_Ran_bind_dom,prints_Cyclophilin-like_PPIase_dom	-	no_errors	RANBP2	HGNC	ENSG00000153201				371	0	0	191	43	18.3761
RANBP2	0	genome.wustl.edu	37	2	109388156	109388156	+	Splice_Site	SNP	G	G	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	109388156	109388156	G	T	SNP	RANBP2	ENST00000283195	human	ensembl	74_37	+1	known	splice_site	c.7850-1	e21-1	0.986	-	-	-	no_errors	RANBP2	HGNC	ENSG00000153201				308	0	0	150	71	32.1267
BUB1	0	genome.wustl.edu	37	2	111413438	111413438	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	111413438	111413438	C	T	SNP	BUB1	ENST00000302759	human	ensembl	74_37	-1	known	missense	c.1754	p.R585H	1.000	NULL	pfam_Mad3_BUB1_I,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Mad3_BUB1_I,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_dom	-	no_errors	BUB1	HGNC	ENSG00000169679				444	0	0	262	88	25.1429
BCL2L11	0	genome.wustl.edu	37	2	111881525	111881525	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	111881525	111881525	C	T	SNP	BCL2L11	ENST00000393256	human	ensembl	74_37	+1	known	missense	c.203	p.A68V	0.997	pirsf_Bcl-2-like_11	pfam_Bcl-x_interacting_BH3_dom,pfam_Apoptosis_Bim_N,pirsf_Bcl-2-like_11	-	no_errors	BCL2L11	HGNC	ENSG00000153094				131	0	0	76	24	24
PQLC3	0	genome.wustl.edu	37	2	11318056	11318056	+	RNA	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	11318056	11318056	T	C	SNP	PQLC3	ENST00000487471	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	PQLC3	HGNC	ENSG00000162976				19	0	0	9	6	40
IWS1	0	genome.wustl.edu	37	2	128249592	128249592	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	128249592	128249592	G	T	SNP	IWS1	ENST00000295321	human	ensembl	74_37	-1	known	missense	c.2002	p.P668T	1.000	pfam_TFIIS_N,superfamily_TFIIS_N	pfam_TFIIS_N,superfamily_TFIIS_N	-	no_errors	IWS1	HGNC	ENSG00000163166				143	0	0	76	22	22.449
SAP130	0	genome.wustl.edu	37	2	128750826	128750826	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	128750826	128750826	T	C	SNP	SAP130	ENST00000357702	human	ensembl	74_37	-1	known	missense	c.1490	p.Y497C	1.000	NULL	NULL	-	no_errors	SAP130	HGNC	ENSG00000136715				254	0	0	104	60	36.5854
CCDC74B	0	genome.wustl.edu	37	2	130897491	130897491	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	130897491	130897491	A	G	SNP	CCDC74B	ENST00000392984	human	ensembl	74_37	-1	known	missense	c.1286	p.V429A	0.976	NULL	NULL	-	no_errors	CCDC74B	HGNC	ENSG00000152076				128	0	0	79	10	11.236
SMPD4	0	genome.wustl.edu	37	2	130912735	130912735	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	130912735	130912735	C	T	SNP	SMPD4	ENST00000409031	human	ensembl	74_37	-1	known	missense	c.1504	p.A502T	1.000	NULL	NULL	-	no_errors	SMPD4	HGNC	ENSG00000136699				118	0	0	81	9	10
SMPD4	0	genome.wustl.edu	37	2	130931134	130931134	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	130931134	130931134	G	A	SNP	SMPD4	ENST00000339679	human	ensembl	74_37	-1	known	missense	c.76	p.R26C	0.000	NULL	NULL	-	no_errors	SMPD4	HGNC	ENSG00000136699				78	0	0	44	9	16.9811
POTEI	0	genome.wustl.edu	37	2	131266727	131266727	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	131266727	131266727	A	G	SNP	POTEI	ENST00000451531	human	ensembl	74_37	-1	novel	missense	c.82	p.C28R	0.028	NULL	pfam_Actin-related,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Actin-related,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Actin-related	-	no_errors	POTEI	HGNC	ENSG00000196834				74	0	0	41	23	35.9375
CCDC74A	0	genome.wustl.edu	37	2	132290615	132290615	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	132290615	132290615	T	C	SNP	CCDC74A	ENST00000295171	human	ensembl	74_37	+1	known	missense	c.980	p.V327A	0.889	NULL	NULL	-	no_errors	CCDC74A	HGNC	ENSG00000163040				105	0	0	47	8	14.5455
UBXN4	0	genome.wustl.edu	37	2	136530012	136530012	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	136530012	136530012	G	A	SNP	UBXN4	ENST00000272638	human	ensembl	74_37	+1	known	missense	c.845	p.R282H	1.000	NULL	pfam_UBX,superfamily_Thioredoxin-like_fold,smart_UBX,pfscan_UBX	-	no_errors	UBXN4	HGNC	ENSG00000144224				128	0	0	84	40	32.2581
LRP1B	0	genome.wustl.edu	37	2	141143483	141143483	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	141143483	141143483	T	C	SNP	LRP1B	ENST00000389484	human	ensembl	74_37	-1	known	missense	c.10510	p.N3504D	1.000	pfam_LDrepeatLR_classA_rpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,pfscan_LDrepeatLR_classA_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,pfam_EG-like_dom,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP1B	HGNC	ENSG00000168702				139	0	0	71	5	6.57895
LRP1B	0	genome.wustl.edu	37	2	141356355	141356355	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	141356355	141356355	A	G	SNP	LRP1B	ENST00000389484	human	ensembl	74_37	-1	known	missense	c.7039	p.S2347P	1.000	pfam_LDLR_classB_rpt,smart_LDLR_classB_rpt,pfscan_LDLR_classB_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,pfam_EG-like_dom,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP1B	HGNC	ENSG00000168702				121	0	0	55	4	6.77966
LRP1B	0	genome.wustl.edu	37	2	141806579	141806579	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	141806579	141806579	C	G	SNP	LRP1B	ENST00000389484	human	ensembl	74_37	-1	known	missense	c.1765	p.E589Q	0.323	pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt_N_dom,smart_LDLR_classB_rpt,pfscan_LDLR_classB_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,pfam_EG-like_dom,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP1B	HGNC	ENSG00000168702				234	0	0	110	47	29.9363
KYNU	0	genome.wustl.edu	37	2	143676273	143676273	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	143676273	143676273	G	A	SNP	KYNU	ENST00000264170	human	ensembl	74_37	+1	known	missense	c.265	p.E89K	1.000	superfamily_PyrdxlP-dep_Trfase,tigrfam_Kynureninase	pfam_Aminotrans_V/Cys_dSase,superfamily_PyrdxlP-dep_Trfase,tigrfam_Kynureninase	-	no_errors	KYNU	HGNC	ENSG00000115919				53	0	0	25	7	21.875
KYNU	0	genome.wustl.edu	37	2	143718341	143718341	+	Splice_Site	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	143718341	143718341	T	C	SNP	KYNU	ENST00000264170	human	ensembl	74_37	+1	known	splice_site	c.729+2	e7+2	1.000	-	-	-	no_errors	KYNU	HGNC	ENSG00000115919				177	0	0	131	11	7.74648
ARHGAP15	0	genome.wustl.edu	37	2	143913190	143913190	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	143913190	143913190	T	C	SNP	ARHGAP15	ENST00000295095	human	ensembl	74_37	+1	known	missense	c.131	p.M44T	1.000	NULL	pfam_RhoGAP_dom,pfam_Pleckstrin_homology,superfamily_Rho_GTPase_activation_prot,smart_Pleckstrin_homology,smart_RhoGAP_dom,pfscan_Pleckstrin_homology,pfscan_RhoGAP_dom	-	no_errors	ARHGAP15	HGNC	ENSG00000075884				106	0	0	37	28	43.0769
ZEB2	0	genome.wustl.edu	37	2	145187336	145187336	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	145187336	145187336	C	A	SNP	ZEB2	ENST00000303660	human	ensembl	74_37	-1	known	nonsense	c.331	p.E111*	1.000	NULL	superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	ZEB2	HGNC	ENSG00000169554				140	0	0	71	16	18.3908
TPO	0	genome.wustl.edu	37	2	1480977	1480977	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	1480977	1480977	G	A	SNP	TPO	ENST00000329066	human	ensembl	74_37	+1	known	silent	c.939	p.P313	0.997	pfam_Haem_peroxidase_animal,superfamily_Haem_peroxidase,pfscan_Haem_peroxidase_animal	pfam_Haem_peroxidase_animal,pfam_EGF-like_Ca-bd_dom,superfamily_Haem_peroxidase,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Sushi_SCR_CCP,pfscan_Haem_peroxidase_animal,prints_Haem_peroxidase_animal_subgr	-	no_errors	TPO	HGNC	ENSG00000115705				28	0	0	11	8	42.1053
KIF5C	0	genome.wustl.edu	37	2	149853788	149853788	+	Silent	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	149853788	149853788	C	T	SNP	KIF5C	ENST00000435030	human	ensembl	74_37	+1	known	silent	c.2034	p.H678	0.993	NULL	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,prints_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	-	no_errors	KIF5C	HGNC	ENSG00000168280				58	0	0	31	15	32.6087
ARL5A	0	genome.wustl.edu	37	2	152670734	152670734	+	Silent	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	152670734	152670734	A	G	SNP	ARL5A	ENST00000295087	human	ensembl	74_37	-1	known	silent	c.204	p.G68	1.000	pfam_Small_GTPase_ARF/SAR,pfam_Small_GTPase,pfam_SRP_receptor_beta_su,pfam_MIRO-like,pfam_Gtr1_RagA,superfamily_P-loop_NTPase,smart_Small_GTPase_SAR1,smart_Small_GTPase_ARF,prints_Small_GTPase_ARF/SAR,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase_ARF/SAR,pfam_Small_GTPase,pfam_SRP_receptor_beta_su,pfam_MIRO-like,pfam_Gtr1_RagA,superfamily_P-loop_NTPase,smart_Small_GTPase_SAR1,smart_Small_GTPase_ARF,prints_Small_GTPase_ARF/SAR,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	ARL5A	HGNC	ENSG00000162980				199	0	0	128	7	5.18519
KCNJ3	0	genome.wustl.edu	37	2	155555563	155555563	+	Silent	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	155555563	155555563	C	T	SNP	KCNJ3	ENST00000295101	human	ensembl	74_37	+1	known	silent	c.276	p.T92	0.874	pfam_K_chnl_inward-rec_Kir,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir	pfam_K_chnl_inward-rec_Kir,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir3.1,prints_K_chnl_inward-rec_Kir	-	no_errors	KCNJ3	HGNC	ENSG00000162989				141	0	0	67	23	25.5556
DDX1	0	genome.wustl.edu	37	2	15743351	15743351	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	15743351	15743351	G	A	SNP	DDX1	ENST00000233084	human	ensembl	74_37	+1	known	missense	c.427	p.G143R	1.000	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl_sf,smart_Helicase_ATP-bd,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_SPRY_rcpt,pfam_Helicase_C,superfamily_P-loop_NTPase,superfamily_ConA-like_lec_gl_sf,smart_Helicase_ATP-bd,smart_SPla/RYanodine_receptor_subgr,smart_Helicase_C,pfscan_B30.2/SPRY,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX1	HGNC	ENSG00000079785				46	0	0	42	4	8.69565
UPP2	0	genome.wustl.edu	37	2	158978111	158978111	+	Silent	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	158978111	158978111	T	C	SNP	UPP2	ENST00000409859	human	ensembl	74_37	+1	known	silent	c.816	p.C272	1.000	pfam_Nucleoside_phosphorylase_d,tigrfam_Uridine_phosphorylase_euk	pfam_Nucleoside_phosphorylase_d,tigrfam_Uridine_phosphorylase_euk	-	no_errors	UPP2	HGNC	ENSG00000007001				208	0	0	115	7	5.7377
UPP2	0	genome.wustl.edu	37	2	158978125	158978125	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	158978125	158978125	A	T	SNP	UPP2	ENST00000409859	human	ensembl	74_37	+1	known	missense	c.830	p.Y277F	1.000	pfam_Nucleoside_phosphorylase_d,tigrfam_Uridine_phosphorylase_euk	pfam_Nucleoside_phosphorylase_d,tigrfam_Uridine_phosphorylase_euk	-	no_errors	UPP2	HGNC	ENSG00000007001				176	0	0	88	14	13.7255
TANC1	0	genome.wustl.edu	37	2	160028760	160028760	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	160028760	160028760	G	A	SNP	TANC1	ENST00000263635	human	ensembl	74_37	+1	known	missense	c.1480	p.A494T	0.628	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,superfamily_P-loop_NTPase,smart_Ankyrin_rpt,smart_TPR_repeat,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_TPR_repeat,pfscan_TPR-contain_dom,prints_Ankyrin_rpt	-	no_errors	TANC1	HGNC	ENSG00000115183				102	0	0	56	7	11.1111
BAZ2B	0	genome.wustl.edu	37	2	160206353	160206353	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	160206353	160206353	C	T	SNP	BAZ2B	ENST00000392783	human	ensembl	74_37	-1	known	missense	c.4729	p.D1577N	0.025	NULL	pfam_Bromodomain,pfam_Methyl_CpG_DNA-bd,pfam_DDT_dom,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_DNA-bd_dom,superfamily_Znf_FYVE_PHD,superfamily_ARM-type_fold,smart_Methyl_CpG_DNA-bd,smart_DDT_dom_subgr,smart_Znf_PHD,smart_Bromodomain,pfscan_Methyl_CpG_DNA-bd,pfscan_Znf_PHD-finger,pfscan_DDT_dom_superfamily,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BAZ2B	HGNC	ENSG00000123636				340	0	0	159	76	32.3404
FIGN	0	genome.wustl.edu	37	2	164466663	164466663	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	164466663	164466663	A	G	SNP	FIGN	ENST00000333129	human	ensembl	74_37	-1	known	missense	c.1679	p.L560S	0.997	pfam_ATPase_AAA_core,superfamily_P-loop_NTPase,smart_AAA+_ATPase	pfam_ATPase_AAA_core,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	FIGN	HGNC	ENSG00000182263				129	0	0	67	7	9.45946
FIGN	0	genome.wustl.edu	37	2	164467532	164467532	+	Silent	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	164467532	164467532	C	T	SNP	FIGN	ENST00000333129	human	ensembl	74_37	-1	known	silent	c.810	p.P270	0.580	NULL	pfam_ATPase_AAA_core,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	FIGN	HGNC	ENSG00000182263				130	0	0	63	21	25
GRB14	0	genome.wustl.edu	37	2	165364963	165364963	+	Splice_Site	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	165364963	165364963	A	G	SNP	GRB14	ENST00000263915	human	ensembl	74_37	-1	known	splice_site	c.1023+2	e8+2	1.000	-	-	-	no_errors	GRB14	HGNC	ENSG00000115290				98	0	0	48	19	28.3582
COBLL1	0	genome.wustl.edu	37	2	165551885	165551885	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	165551885	165551885	C	T	SNP	COBLL1	ENST00000194871	human	ensembl	74_37	-1	known	missense	c.2332	p.V778I	0.000	NULL	pfam_Cordon-bleu_ubiquitin_domain,pfscan_WH2_dom	-	no_errors	COBLL1	HGNC	ENSG00000082438				261	0	0	117	41	25.9494
SCN2A	0	genome.wustl.edu	37	2	166226695	166226695	+	Silent	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	166226695	166226695	T	C	SNP	SCN2A	ENST00000283256	human	ensembl	74_37	+1	known	silent	c.3735	p.A1245	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_Na_trans_assoc,pfam_DUF3451,pfam_PKD1_2_channel,smart_IQ_motif_EF-hand-BS,prints_Na_channel_asu,prints_PKD_2,pfscan_IQ_motif_EF-hand-BS	-	no_errors	SCN2A	HGNC	ENSG00000136531				263	0	0	103	63	37.9518
SCN2A	0	genome.wustl.edu	37	2	166243472	166243472	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	166243472	166243472	T	C	SNP	SCN2A	ENST00000283256	human	ensembl	74_37	+1	known	missense	c.4768	p.F1590L	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_Na_trans_assoc,pfam_DUF3451,pfam_PKD1_2_channel,smart_IQ_motif_EF-hand-BS,prints_Na_channel_asu,prints_PKD_2,pfscan_IQ_motif_EF-hand-BS	-	no_errors	SCN2A	HGNC	ENSG00000136531				214	0	0	127	12	8.63309
TTC21B	0	genome.wustl.edu	37	2	166747086	166747086	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	166747086	166747086	C	T	SNP	TTC21B	ENST00000243344	human	ensembl	74_37	-1	known	missense	c.3166	p.G1056S	1.000	NULL	smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC21B	HGNC	ENSG00000123607				99	0	0	46	28	37.8378
SCN9A	0	genome.wustl.edu	37	2	167083198	167083198	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	167083198	167083198	T	C	SNP	SCN9A	ENST00000303354	human	ensembl	74_37	-1	known	missense	c.4280	p.K1427R	0.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_DUF3451,pfam_Na_trans_assoc,pfam_PKD1_2_channel,smart_IQ_motif_EF-hand-BS,prints_Na_channel_asu,prints_PKD_2	-	no_errors	SCN9A	HGNC	ENSG00000169432				17	0	0	7	6	46.1538
FAM49A	0	genome.wustl.edu	37	2	16742786	16742786	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	16742786	16742786	T	C	SNP	FAM49A	ENST00000355549	human	ensembl	74_37	-1	known	missense	c.451	p.I151V	1.000	pfam_DUF1394	pfam_DUF1394	-	no_errors	FAM49A	HGNC	ENSG00000197872				79	0	0	52	16	23.5294
XIRP2	0	genome.wustl.edu	37	2	167760302	167760302	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	167760302	167760302	C	T	SNP	XIRP2	ENST00000295237	human	ensembl	74_37	+1	known	missense	c.310	p.R104W	0.021	NULL	pfam_Actin-binding_Xin_repeat	-	no_errors	XIRP2	HGNC	ENSG00000163092				107	0	0	56	24	30
XIRP2	0	genome.wustl.edu	37	2	168101702	168101702	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	168101702	168101702	T	G	SNP	XIRP2	ENST00000295237	human	ensembl	74_37	+1	known	missense	c.3800	p.I1267R	1.000	NULL	pfam_Actin-binding_Xin_repeat	-	no_errors	XIRP2	HGNC	ENSG00000163092				290	0	0	142	63	30.7317
STK39	0	genome.wustl.edu	37	2	169103919	169103919	+	Silent	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	169103919	169103919	C	T	SNP	STK39	ENST00000355999	human	ensembl	74_37	-1	known	silent	c.27	p.V9	0.998	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Kinase_OSR1/WNK_CCT,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	STK39	HGNC	ENSG00000198648				24	0	0	11	3	21.4286
TLK1	0	genome.wustl.edu	37	2	171914690	171914690	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	171914690	171914690	G	A	SNP	TLK1	ENST00000431350	human	ensembl	74_37	-1	known	missense	c.424	p.R142C	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	TLK1	HGNC	ENSG00000198586				168	0	0	91	40	30.5344
CYBRD1	0	genome.wustl.edu	37	2	172398264	172398264	+	Silent	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	172398264	172398264	C	T	SNP	CYBRD1	ENST00000321348	human	ensembl	74_37	+1	known	silent	c.363	p.S121	1.000	pfam_Cyt_b561_euk,smart_Cyt_b561/ferric_Rdtase_TM,pfscan_Cyt_b561/ferric_Rdtase_TM	pfam_Cyt_b561_euk,smart_Cyt_b561/ferric_Rdtase_TM,pfscan_Cyt_b561/ferric_Rdtase_TM	-	no_errors	CYBRD1	HGNC	ENSG00000071967				289	0	0	138	62	31
CHRNA1	0	genome.wustl.edu	37	2	175618330	175618330	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	175618330	175618330	T	C	SNP	CHRNA1	ENST00000261007	human	ensembl	74_37	-1	known	missense	c.754	p.M252V	1.000	pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,prints_Neur_channel	pfam_Neurotrans-gated_channel_TM,pfam_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,prints_Nicotinic_acetylcholine_rcpt,prints_Neur_channel	-	no_errors	CHRNA1	HGNC	ENSG00000138435				233	0	0	107	46	30.0654
HOXD3	0	genome.wustl.edu	37	2	177034214	177034214	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	177034214	177034214	G	A	SNP	HOXD3	ENST00000249440	human	ensembl	74_37	+1	known	silent	c.372	p.P124	0.025	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa	-	no_errors	HOXD3	HGNC	ENSG00000128652				107	0	0	53	15	22.0588
AGPS	0	genome.wustl.edu	37	2	178388535	178388535	+	Splice_Site	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	178388535	178388535	T	C	SNP	AGPS	ENST00000264167	human	ensembl	74_37	+1	known	splice_site	c.1855+2	e19+2	1.000	-	-	-	no_errors	AGPS	HGNC	ENSG00000018510				128	0	0	60	31	34.0659
TTN	0	genome.wustl.edu	37	2	179451486	179451486	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	179451486	179451486	T	C	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.56438	p.N18813S	1.000	pfam_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_Fibronectin_type3,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				250	0	0	121	14	10.3704
TTN	0	genome.wustl.edu	37	2	179483422	179483422	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	179483422	179483422	G	A	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	nonsense	c.39151	p.Q13051*	0.012	pfam_Ig_I-set,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				119	0	0	72	4	5.26316
TTN	0	genome.wustl.edu	37	2	179495802	179495802	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	179495802	179495802	T	C	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.36269	p.D12090G	1.000	pfam_Ig_I-set,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				109	0	0	43	21	32.8125
TTN	0	genome.wustl.edu	37	2	179600514	179600514	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	179600514	179600514	T	C	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.10927	p.K3643E	1.000	superfamily_RNaseH-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				79	0	0	47	3	6
TTN	0	genome.wustl.edu	37	2	179636101	179636101	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	179636101	179636101	T	A	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.7953	p.E2651D	1.000	pfam_Ig_I-set,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				115	0	0	77	7	8.33333
CWC22	0	genome.wustl.edu	37	2	180815357	180815357	+	Silent	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	180815357	180815357	C	T	SNP	CWC22	ENST00000295749	human	ensembl	74_37	-1	known	silent	c.2022	p.A674	0.000	NULL	pfam_MIF4G-like_typ-3,pfam_Initiation_fac_eIF4g_MI,superfamily_ARM-type_fold,smart_MIF4G-like_typ-3,smart_Initiation_fac_eIF4g_MI	-	no_errors	CWC22	HGNC	ENSG00000163510				124	0	0	56	19	25.3333
CERKL	0	genome.wustl.edu	37	2	182468700	182468700	+	Silent	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	182468700	182468700	A	G	SNP	CERKL	ENST00000339098	human	ensembl	74_37	-1	known	silent	c.345	p.G115	0.073	NULL	pfam_Diacylglycerol_kinase_cat_dom	-	no_errors	CERKL	HGNC	ENSG00000188452				35	0	0	27	3	10
FRZB	0	genome.wustl.edu	37	2	183731239	183731239	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	183731239	183731239	G	A	SNP	FRZB	ENST00000295113	human	ensembl	74_37	-1	known	silent	c.42	p.A14	0.993	NULL	pfam_Frizzled_dom,pfam_Netrin_module_non-TIMP,superfamily_Frizzled_dom,superfamily_TIMP-like_OB-fold,smart_Frizzled_dom,smart_Netrin_module_non-TIMP,pfscan_Frizzled_dom,pfscan_Netrin_domain	-	no_errors	FRZB	HGNC	ENSG00000162998				10	0	0	16	3	15.7895
ZNF804A	0	genome.wustl.edu	37	2	185801510	185801510	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	185801510	185801510	G	A	SNP	ZNF804A	ENST00000302277	human	ensembl	74_37	+1	known	missense	c.1387	p.D463N	1.000	NULL	pfam_Znf_C2H2_jaz	-	no_errors	ZNF804A	HGNC	ENSG00000170396				215	0	0	104	56	35
ZNF804A	0	genome.wustl.edu	37	2	185802505	185802505	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	185802505	185802505	A	T	SNP	ZNF804A	ENST00000302277	human	ensembl	74_37	+1	known	missense	c.2382	p.E794D	0.133	NULL	pfam_Znf_C2H2_jaz	-	no_errors	ZNF804A	HGNC	ENSG00000170396				93	0	0	50	12	19.3548
FSIP2	0	genome.wustl.edu	37	2	186671181	186671181	+	Silent	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	186671181	186671181	T	C	SNP	FSIP2	ENST00000343098	human	ensembl	74_37	+1	known	silent	c.17415	p.N5805	0.000	NULL	NULL	-	no_errors	FSIP2	HGNC	ENSG00000188738				233	1	0.42735	113	50	30.6748
FSIP2	0	genome.wustl.edu	37	2	186678388	186678388	+	Silent	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	186678388	186678388	T	C	SNP	FSIP2	ENST00000343098	human	ensembl	74_37	+1	known	silent	c.20211	p.I6737	0.902	NULL	NULL	-	no_errors	FSIP2	HGNC	ENSG00000188738				64	0	0	27	15	35.7143
MYT1L	0	genome.wustl.edu	37	2	1890312	1890312	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	1890312	1890312	T	C	SNP	MYT1L	ENST00000399161	human	ensembl	74_37	-1	known	missense	c.2710	p.K904E	1.000	pfam_Znf_C2HC	pfam_Myelin_TF,pfam_Znf_C2HC	-	no_errors	MYT1L	HGNC	ENSG00000186487				101	0	0	38	15	28.3019
COL3A1	0	genome.wustl.edu	37	2	189849518	189849518	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	189849518	189849518	T	A	SNP	COL3A1	ENST00000304636	human	ensembl	74_37	+1	known	missense	c.112	p.S38T	0.199	pfam_VWF_C,smart_VWF_C,pfscan_VWF_C	pfam_Collagen,pfam_Fib_collagen_C,pfam_VWF_C,superfamily_Fibrinogen_a/b/g_C_dom,smart_VWF_C,smart_Fib_collagen_C,pfscan_VWF_C	-	no_errors	COL3A1	HGNC	ENSG00000168542				164	0	0	130	7	5.10949
COL5A2	0	genome.wustl.edu	37	2	189904010	189904010	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	189904010	189904010	C	T	SNP	COL5A2	ENST00000374866	human	ensembl	74_37	-1	known	missense	c.3913	p.A1305T	0.007	pfam_Fib_collagen_C,superfamily_Fibrinogen_a/b/g_C_dom,smart_Fib_collagen_C	pfam_Collagen,pfam_Fib_collagen_C,pfam_VWF_C,superfamily_Fibrinogen_a/b/g_C_dom,smart_VWF_C,smart_Fib_collagen_C,pfscan_VWF_C	-	no_errors	COL5A2	HGNC	ENSG00000204262				210	1	0.473934	85	50	37.037
ANKAR	0	genome.wustl.edu	37	2	190557886	190557886	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	190557886	190557886	G	A	SNP	ANKAR	ENST00000313581	human	ensembl	74_37	+1	known	missense	c.1290	p.M430I	0.982	NULL	pfam_Armadillo,superfamily_ARM-type_fold,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Armadillo,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Armadillo	-	no_errors	ANKAR	HGNC	ENSG00000151687				58	0	0	50	3	5.66038
MFSD6	0	genome.wustl.edu	37	2	191301720	191301720	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	191301720	191301720	A	T	SNP	MFSD6	ENST00000281416	human	ensembl	74_37	+1	known	missense	c.965	p.D322V	1.000	superfamily_MFS_dom_general_subst_transpt	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	-	no_errors	MFSD6	HGNC	ENSG00000151690				371	0	0	187	73	28.0769
MYT1L	0	genome.wustl.edu	37	2	1926086	1926086	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	1926086	1926086	G	A	SNP	MYT1L	ENST00000399161	human	ensembl	74_37	-1	known	silent	c.1455	p.S485	1.000	NULL	pfam_Myelin_TF,pfam_Znf_C2HC	-	no_errors	MYT1L	HGNC	ENSG00000186487				141	0	0	70	40	36.3636
DNAH7	0	genome.wustl.edu	37	2	196825456	196825456	+	Silent	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	196825456	196825456	A	G	SNP	DNAH7	ENST00000312428	human	ensembl	74_37	-1	known	silent	c.2419	p.L807	0.997	pfam_Dynein_heavy_dom-2	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,superfamily_P-loop_NTPase,superfamily_Signal_recog_particle_SRP9/14,smart_AAA+_ATPase,pfscan_EF_hand_dom	-	no_errors	DNAH7	HGNC	ENSG00000118997				329	0	0	182	76	29.4574
PLCL1	0	genome.wustl.edu	37	2	198950524	198950524	+	Silent	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	198950524	198950524	T	C	SNP	PLCL1	ENST00000428675	human	ensembl	74_37	+1	known	silent	c.2283	p.C761	0.646	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,pfam_C2_dom,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_dom,smart_Pleckstrin_homology,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_dom,pfscan_C2_dom,pfscan_Pleckstrin_homology,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y,prints_Pinositol_PLipase_C	-	no_errors	PLCL1	HGNC	ENSG00000115896				161	0	0	109	7	6.03448
SATB2	0	genome.wustl.edu	37	2	200245100	200245100	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	200245100	200245100	C	T	SNP	SATB2	ENST00000260926	human	ensembl	74_37	-1	known	missense	c.584	p.C195Y	1.000	superfamily_Lambda_DNA-bd_dom	pfam_Hmoeo_CUT,pfam_Homeobox_dom,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Hmoeo_CUT	-	no_errors	SATB2	HGNC	ENSG00000119042				237	0	0	148	43	22.5131
CFLAR	0	genome.wustl.edu	37	2	202005188	202005188	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	202005188	202005188	T	A	SNP	CFLAR	ENST00000494258	human	ensembl	74_37	+1	putative	missense	c.344	p.I115N	0.006	NULL	pfam_DED,superfamily_DEATH-like_dom,smart_DED,pfscan_DED	-	no_errors	CFLAR	HGNC	ENSG00000003402				105	0	0	50	38	43.1818
STRADB	0	genome.wustl.edu	37	2	202337729	202337729	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	202337729	202337729	C	T	SNP	STRADB	ENST00000194530	human	ensembl	74_37	+1	known	missense	c.245	p.T82I	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	STRADB	HGNC	ENSG00000082146				276	0	0	116	64	35.5556
ALS2	0	genome.wustl.edu	37	2	202606542	202606542	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	202606542	202606542	G	A	SNP	ALS2	ENST00000264276	human	ensembl	74_37	-1	known	nonsense	c.2206	p.Q736*	1.000	pfam_DH-domain,superfamily_DH-domain,pfscan_DH-domain	pfam_Reg_chr_condens,pfam_MORN,pfam_VPS9,pfam_DH-domain,superfamily_RCC1/BLIP-II,superfamily_DH-domain,smart_MORN,pfscan_VPS9,pfscan_Reg_chr_condens,pfscan_DH-domain,prints_Reg_chr_condens	-	no_errors	ALS2	HGNC	ENSG00000003393				47	0	0	24	14	36.8421
CDK15	0	genome.wustl.edu	37	2	202712162	202712162	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	202712162	202712162	T	C	SNP	CDK15	ENST00000374598	human	ensembl	74_37	+1	known	missense	c.910	p.S304P	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	CDK15	HGNC	ENSG00000138395				164	0	0	115	12	9.44882
NBEAL1	0	genome.wustl.edu	37	2	204001465	204001465	+	Silent	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	204001465	204001465	A	G	SNP	NBEAL1	ENST00000449802	human	ensembl	74_37	+1	known	silent	c.4446	p.E1482	1.000	NULL	pfam_BEACH_dom,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_ConA-like_lec_gl_sf,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	NBEAL1	HGNC	ENSG00000144426				178	0	0	82	38	31.6667
ABI2	0	genome.wustl.edu	37	2	204292052	204292052	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	204292052	204292052	T	C	SNP	ABI2	ENST00000295851	human	ensembl	74_37	+1	known	missense	c.1519	p.S507P	1.000	smart_SH3_domain,pfscan_SH3_domain,prints_SH3_domain	pfam_Abl-interactor_HHR_dom,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain,pfscan_T_SNARE_dom,prints_SH3_domain,prints_p67phox	-	no_errors	ABI2	HGNC	ENSG00000138443				81	0	0	34	16	32
PUM2	0	genome.wustl.edu	37	2	20453706	20453706	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	20453706	20453706	G	T	SNP	PUM2	ENST00000361078	human	ensembl	74_37	-1	known	nonsense	c.2946	p.C982*	1.000	superfamily_ARM-type_fold,pfscan_Pumilio_RNA-bd_rpt	pfam_Pumilio_RNA-bd_rpt,superfamily_ARM-type_fold,smart_Pumilio_RNA-bd_rpt,pfscan_Pumilio_RNA-bd_rpt	-	no_errors	PUM2	HGNC	ENSG00000055917				258	1	0.3861	135	71	34.466
PARD3B	0	genome.wustl.edu	37	2	206480189	206480189	+	Silent	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	206480189	206480189	C	T	SNP	PARD3B	ENST00000406610	human	ensembl	74_37	+1	known	silent	c.3270	p.P1090	0.011	NULL	pfam_DUF3534,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	PARD3B	HGNC	ENSG00000116117				360	0	0	164	72	30.5085
NRP2	0	genome.wustl.edu	37	2	206641233	206641233	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	206641233	206641233	C	T	SNP	NRP2	ENST00000272849	human	ensembl	74_37	+1	known	missense	c.2704	p.R902C	0.999	pfam_Neuropilin1_C	pirsf_Neuropilin,pfam_CUB_dom,pfam_Coagulation_fac_5/8-C_type_dom,pfam_Neuropilin1_C,pfam_MAM_dom,superfamily_Galactose-bd-like,superfamily_CUB_dom,superfamily_ConA-like_lec_gl_sf,smart_CUB_dom,smart_Coagulation_fac_5/8-C_type_dom,smart_MAM_dom,prints_MAM_dom,pfscan_CUB_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_MAM_dom	-	no_errors	NRP2	HGNC	ENSG00000118257				263	0	0	170	73	30.0412
HS1BP3	0	genome.wustl.edu	37	2	20845123	20845123	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	20845123	20845123	G	A	SNP	HS1BP3	ENST00000304031	human	ensembl	74_37	-1	known	missense	c.175	p.P59S	0.378	pfam_Phox,superfamily_Phox,smart_Phox,pfscan_Phox	pfam_Phox,superfamily_Phox,smart_Phox,pfscan_Phox	-	no_errors	HS1BP3	HGNC	ENSG00000118960				142	0	0	69	36	34.2857
CRYGC	0	genome.wustl.edu	37	2	208993095	208993095	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	208993095	208993095	G	A	SNP	CRYGC	ENST00000282141	human	ensembl	74_37	-1	known	silent	c.357	p.S119	0.128	pfam_Beta/gamma_crystallin,superfamily_G_crystallin-rel,smart_Beta/gamma_crystallin,pfscan_Beta/gamma_crystallin	pfam_Beta/gamma_crystallin,superfamily_G_crystallin-rel,smart_Beta/gamma_crystallin,pfscan_Beta/gamma_crystallin,prints_Beta/gamma_crystallin	-	no_errors	CRYGC	HGNC	ENSG00000163254				111	0	0	50	24	32.4324
MAP2	0	genome.wustl.edu	37	2	210559555	210559555	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	210559555	210559555	G	T	SNP	MAP2	ENST00000360351	human	ensembl	74_37	+1	known	missense	c.2661	p.E887D	1.000	pfam_MAP2_projctn	pfam_MAP2_projctn,pfam_MAP_tubulin-bd_rpt	-	no_errors	MAP2	HGNC	ENSG00000078018				102	0	0	46	23	33.3333
KANSL1L	0	genome.wustl.edu	37	2	211018861	211018861	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	211018861	211018861	A	G	SNP	KANSL1L	ENST00000281772	human	ensembl	74_37	-1	known	missense	c.446	p.V149A	0.919	NULL	NULL	-	no_errors	KANSL1L	HGNC	ENSG00000144445				132	0	0	89	6	6.31579
CPS1	0	genome.wustl.edu	37	2	211469862	211469862	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	211469862	211469862	T	C	SNP	CPS1	ENST00000430249	human	ensembl	74_37	+1	known	missense	c.1891	p.S631P	1.000	pfam_CbamoylP_synth_lsu-like_ATP-bd,pfam_ATP-grasp_carboxylate-amine,pfam_Dala_Dala_lig_C,pfscan_ATP-grasp,prints_CbamoylP_synth_lsu_CPSase_dom,tigrfam_CarbamoylP_synth_lsu	pfam_CbamoylP_synth_lsu-like_ATP-bd,pfam_CarbamoylP_synth_ssu_N,pfam_CarbamoylP_synth_lsu_oligo,pfam_GATASE,pfam_CarbamoylP_synth_lsu_N,pfam_MGS-like_dom,pfam_ATP-grasp_carboxylate-amine,pfam_Dala_Dala_lig_C,superfamily_CarbamoylP_synth_lsu_oligo,superfamily_CarbamoylP_synth_ssu_N,superfamily_PreATP-grasp_dom,superfamily_MGS-like_dom,smart_MGS-like_dom,pfscan_ATP-grasp,prints_CbamoylP_synth_lsu_CPSase_dom,tigrfam_CarbamoylP_synth_lsu,tigrfam_CarbamoylP_synth_ssu	-	no_errors	CPS1	HGNC	ENSG00000021826				113	0	0	54	5	8.47458
CPS1	0	genome.wustl.edu	37	2	211471538	211471538	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	211471538	211471538	C	T	SNP	CPS1	ENST00000430249	human	ensembl	74_37	+1	known	missense	c.2083	p.R695C	1.000	pfam_CbamoylP_synth_lsu-like_ATP-bd,pfam_ATP-grasp_carboxylate-amine,pfam_Dala_Dala_lig_C,pfscan_ATP-grasp,tigrfam_CarbamoylP_synth_lsu	pfam_CbamoylP_synth_lsu-like_ATP-bd,pfam_CarbamoylP_synth_ssu_N,pfam_CarbamoylP_synth_lsu_oligo,pfam_GATASE,pfam_CarbamoylP_synth_lsu_N,pfam_MGS-like_dom,pfam_ATP-grasp_carboxylate-amine,pfam_Dala_Dala_lig_C,superfamily_CarbamoylP_synth_lsu_oligo,superfamily_CarbamoylP_synth_ssu_N,superfamily_PreATP-grasp_dom,superfamily_MGS-like_dom,smart_MGS-like_dom,pfscan_ATP-grasp,prints_CbamoylP_synth_lsu_CPSase_dom,tigrfam_CarbamoylP_synth_lsu,tigrfam_CarbamoylP_synth_ssu	-	no_errors	CPS1	HGNC	ENSG00000021826				132	1	0.75188	57	28	32.9412
SPAG16	0	genome.wustl.edu	37	2	215013877	215013877	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	215013877	215013877	C	T	SNP	SPAG16	ENST00000331683	human	ensembl	74_37	+1	known	missense	c.1607	p.A536V	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	SPAG16	HGNC	ENSG00000144451				219	0	0	137	13	8.66667
BARD1	0	genome.wustl.edu	37	2	215632335	215632335	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	215632335	215632335	A	G	SNP	BARD1	ENST00000260947	human	ensembl	74_37	-1	known	missense	c.1439	p.L480S	1.000	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_BRCT_dom,superfamily_Ankyrin_rpt-contain_dom,superfamily_BRCT_dom,smart_Ankyrin_rpt,smart_BRCT_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_BRCT_dom,pfscan_Znf_RING,prints_Ankyrin_rpt	-	no_errors	BARD1	HGNC	ENSG00000138376				158	0	0	55	34	38.2022
ABCA12	0	genome.wustl.edu	37	2	215838763	215838763	+	Silent	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	215838763	215838763	C	T	SNP	ABCA12	ENST00000272895	human	ensembl	74_37	-1	known	silent	c.5472	p.Q1824	0.001	NULL	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA12	HGNC	ENSG00000144452				155	0	0	67	30	30.9278
FN1	0	genome.wustl.edu	37	2	216257711	216257711	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	216257711	216257711	C	T	SNP	FN1	ENST00000354785	human	ensembl	74_37	-1	known	missense	c.4012	p.V1338I	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Fibronectin_type1,pfam_FN_type2_col-bd,superfamily_Kringle-like,superfamily_Fibronectin_type3,smart_Fibronectin_type1,smart_FN_type2_col-bd,smart_Fibronectin_type3,pfscan_Fibronectin_type1,pfscan_FN_type2_col-bd,pfscan_Fibronectin_type3	-	no_errors	FN1	HGNC	ENSG00000115414				116	0	0	60	19	24.0506
FN1	0	genome.wustl.edu	37	2	216271937	216271937	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	216271937	216271937	A	G	SNP	FN1	ENST00000354785	human	ensembl	74_37	-1	known	missense	c.2626	p.Y876H	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Fibronectin_type1,pfam_FN_type2_col-bd,superfamily_Kringle-like,superfamily_Fibronectin_type3,smart_Fibronectin_type1,smart_FN_type2_col-bd,smart_Fibronectin_type3,pfscan_Fibronectin_type1,pfscan_FN_type2_col-bd,pfscan_Fibronectin_type3	-	no_errors	FN1	HGNC	ENSG00000115414				255	0	0	150	17	10.1796
FN1	0	genome.wustl.edu	37	2	216299477	216299477	+	Silent	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	216299477	216299477	C	T	SNP	FN1	ENST00000354785	human	ensembl	74_37	-1	known	silent	c.219	p.A73	0.339	pfam_Fibronectin_type1,smart_Fibronectin_type1,pfscan_Fibronectin_type1	pfam_Fibronectin_type3,pfam_Fibronectin_type1,pfam_FN_type2_col-bd,superfamily_Kringle-like,superfamily_Fibronectin_type3,smart_Fibronectin_type1,smart_FN_type2_col-bd,smart_Fibronectin_type3,pfscan_Fibronectin_type1,pfscan_FN_type2_col-bd,pfscan_Fibronectin_type3	-	no_errors	FN1	HGNC	ENSG00000115414				274	0	0	123	55	30.8989
RPL37A	0	genome.wustl.edu	37	2	217364716	217364716	+	Silent	SNP	C	C	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	217364716	217364716	C	A	SNP	RPL37A	ENST00000491306	human	ensembl	74_37	+1	known	silent	c.177	p.S59	1.000	pfam_Ribosomal_L37ae,superfamily_Ribosomal_zn-bd,tigrfam_Ribosomal_L37ae	pfam_Ribosomal_L37ae,superfamily_Ribosomal_zn-bd,tigrfam_Ribosomal_L37ae	-	no_errors	RPL37A	HGNC	ENSG00000197756				124	0	0	54	12	18.1818
CTDSP1	0	genome.wustl.edu	37	2	219269277	219269277	+	RNA	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	219269277	219269277	G	A	SNP	CTDSP1	ENST00000464255	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	CTDSP1	HGNC	ENSG00000144579				24	0	0	4	4	50
RNF25	0	genome.wustl.edu	37	2	219529962	219529962	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	219529962	219529962	G	A	SNP	RNF25	ENST00000295704	human	ensembl	74_37	-1	known	silent	c.582	p.V194	0.212	smart_Znf_RING,pfscan_Znf_RING	pfam_RWD-domain,superfamily_UBQ-conjugating_enzyme/RWD,smart_RWD-domain,smart_Znf_RING,pfscan_RWD-domain,pfscan_Znf_RING	-	no_errors	RNF25	HGNC	ENSG00000163481				78	0	0	45	16	26.2295
TTLL4	0	genome.wustl.edu	37	2	219616528	219616528	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	219616528	219616528	A	C	SNP	TTLL4	ENST00000258398	human	ensembl	74_37	+1	known	missense	c.2975	p.Q992P	1.000	NULL	pfam_TTL/TTLL_fam	-	no_errors	TTLL4	HGNC	ENSG00000135912				83	0	0	24	18	42.8571
CRYBA2	0	genome.wustl.edu	37	2	219856877	219856877	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	219856877	219856877	T	C	SNP	CRYBA2	ENST00000295728	human	ensembl	74_37	-1	known	missense	c.250	p.S84G	1.000	pfam_Beta/gamma_crystallin,superfamily_G_crystallin-rel,smart_Beta/gamma_crystallin,pfscan_Beta/gamma_crystallin,prints_Beta/gamma_crystallin	pfam_Beta/gamma_crystallin,superfamily_G_crystallin-rel,smart_Beta/gamma_crystallin,pfscan_Beta/gamma_crystallin,prints_Beta/gamma_crystallin	-	no_errors	CRYBA2	HGNC	ENSG00000163499				35	0	0	16	7	30.4348
SLC23A3	0	genome.wustl.edu	37	2	220034124	220034124	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	220034124	220034124	G	A	SNP	SLC23A3	ENST00000455516	human	ensembl	74_37	-1	known	missense	c.325	p.P109S	1.000	pfam_Xant/urac/vitC	pfam_Xant/urac/vitC	-	no_errors	SLC23A3	HGNC	ENSG00000213901				231	0	0	123	61	33.1522
ATG9A	0	genome.wustl.edu	37	2	220088662	220088662	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	220088662	220088662	C	T	SNP	ATG9A	ENST00000361242	human	ensembl	74_37	-1	known	missense	c.1348	p.D450N	1.000	pfam_Autophagy-rel_prot_9	pfam_Autophagy-rel_prot_9,superfamily_Cyt_c_oxidase_su3	-	no_errors	ATG9A	HGNC	ENSG00000198925				208	0	0	101	50	33.1126
DNAJB2	0	genome.wustl.edu	37	2	220149365	220149365	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	220149365	220149365	G	A	SNP	DNAJB2	ENST00000336576	human	ensembl	74_37	+1	known	missense	c.631	p.D211N	1.000	smart_Ubiquitin-int_motif	pfam_DnaJ_domain,superfamily_DnaJ_domain,smart_DnaJ_domain,smart_Ubiquitin-int_motif,pfscan_Ubiquitin-int_motif,pfscan_DnaJ_domain,prints_DnaJ_domain	-	no_errors	DNAJB2	HGNC	ENSG00000135924				108	0	0	54	26	32.5
SPEG	0	genome.wustl.edu	37	2	220312963	220312963	+	Silent	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	220312963	220312963	C	T	SNP	SPEG	ENST00000312358	human	ensembl	74_37	+1	novel	silent	c.1083	p.S361	0.005	NULL	pfam_Ig_I-set,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	SPEG	HGNC	ENSG00000072195				66	0	0	31	13	29.5455
SPEG	0	genome.wustl.edu	37	2	220332065	220332065	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	220332065	220332065	G	A	SNP	SPEG	ENST00000312358	human	ensembl	74_37	+1	novel	missense	c.3051	p.M1017I	1.000	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	SPEG	HGNC	ENSG00000072195				144	0	0	71	28	28.2828
SPEG	0	genome.wustl.edu	37	2	220336948	220336948	+	Splice_Site	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	220336948	220336948	G	A	SNP	SPEG	ENST00000485813	human	ensembl	74_37	+1	known	splice_site	c.NULL	NULL	1.000	-	-	-	no_errors	SPEG	HGNC	ENSG00000072195				147	0	0	103	8	7.20721
SPEG	0	genome.wustl.edu	37	2	220344792	220344792	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	220344792	220344792	T	C	SNP	SPEG	ENST00000312358	human	ensembl	74_37	+1	novel	missense	c.5272	p.Y1758H	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_dom	pfam_Ig_I-set,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	SPEG	HGNC	ENSG00000072195				141	0	0	85	9	9.57447
SPEG	0	genome.wustl.edu	37	2	220353309	220353309	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	220353309	220353309	C	T	SNP	SPEG	ENST00000312358	human	ensembl	74_37	+1	novel	missense	c.7948	p.R2650W	1.000	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	SPEG	HGNC	ENSG00000072195				126	0	0	66	32	32.6531
SPEG	0	genome.wustl.edu	37	2	220354353	220354353	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	220354353	220354353	G	A	SNP	SPEG	ENST00000312358	human	ensembl	74_37	+1	novel	silent	c.8613	p.E2871	0.985	NULL	pfam_Ig_I-set,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	SPEG	HGNC	ENSG00000072195				376	0	0	291	27	8.49057
SLC4A3	0	genome.wustl.edu	37	2	220499144	220499144	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	220499144	220499144	T	C	SNP	SLC4A3	ENST00000273063	human	ensembl	74_37	+1	known	missense	c.1645	p.C549R	1.000	pfam_Band3_cytoplasmic_dom,superfamily_PTrfase/Anion_transptr,tigrfam_HCO3_transpt_euk	pfam_HCO3_transpt_C,pfam_Band3_cytoplasmic_dom,superfamily_PTrfase/Anion_transptr,prints_HCO3_transpt_euk,prints_Anion_exchange_3,prints_Anion_exchange,tigrfam_HCO3_transpt_euk	-	no_errors	SLC4A3	HGNC	ENSG00000114923				183	0	0	77	33	30
DOCK10	0	genome.wustl.edu	37	2	225659763	225659763	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	225659763	225659763	T	C	SNP	DOCK10	ENST00000258390	human	ensembl	74_37	-1	known	missense	c.4987	p.T1663A	1.000	superfamily_ARM-type_fold	pfam_DOCK_C,pfam_DOCK_C/D_N,pfam_Pleckstrin_homology,superfamily_ARM-type_fold,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	DOCK10	HGNC	ENSG00000135905				257	0	0	140	25	15.1515
NYAP2	0	genome.wustl.edu	37	2	226378131	226378131	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	226378131	226378131	G	A	SNP	NYAP2	ENST00000272907	human	ensembl	74_37	+1	known	missense	c.266	p.G89D	1.000	NULL	NULL	-	no_errors	NYAP2	HGNC	ENSG00000144460				132	0	0	54	16	22.8571
NYAP2	0	genome.wustl.edu	37	2	226447400	226447400	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	226447400	226447400	A	G	SNP	NYAP2	ENST00000272907	human	ensembl	74_37	+1	known	missense	c.1267	p.T423A	1.000	NULL	NULL	-	no_errors	NYAP2	HGNC	ENSG00000144460				31	0	0	21	5	19.2308
IRS1	0	genome.wustl.edu	37	2	227663319	227663319	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	227663319	227663319	A	G	SNP	IRS1	ENST00000305123	human	ensembl	74_37	-1	known	missense	c.136	p.Y46H	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_Insln_rcpt_S1,pfam_Pleckstrin_homology,smart_Pleckstrin_homology,smart_Insln_rcpt_S1,prints_Insln_rcpt_S1,pfscan_Pleckstrin_homology,pfscan_Insln_rcpt_S1	-	no_errors	IRS1	HGNC	ENSG00000169047				227	0	0	170	13	7.10383
SP140	0	genome.wustl.edu	37	2	231112772	231112772	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	231112772	231112772	G	C	SNP	SP140	ENST00000392045	human	ensembl	74_37	+1	known	missense	c.884	p.R295T	0.000	NULL	pfam_Sp100,pfam_SAND_dom,pfam_Bromodomain,pfam_Znf_PHD-finger,superfamily_SAND_dom-like,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_SAND_dom,smart_Znf_PHD,smart_Bromodomain,pfscan_Znf_PHD-finger,pfscan_SAND_dom,pfscan_Bromodomain	-	no_errors	SP140	HGNC	ENSG00000079263				147	0	0	56	29	34.1176
GPR55	0	genome.wustl.edu	37	2	231774792	231774792	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	231774792	231774792	G	A	SNP	GPR55	ENST00000392039	human	ensembl	74_37	-1	known	missense	c.886	p.R296C	0.999	prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	GPR55	HGNC	ENSG00000135898				189	0	0	86	48	35.8209
GPR55	0	genome.wustl.edu	37	2	231774894	231774894	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	231774894	231774894	C	A	SNP	GPR55	ENST00000392039	human	ensembl	74_37	-1	known	missense	c.784	p.A262S	0.001	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	GPR55	HGNC	ENSG00000135898				163	0	0	105	56	34.7826
ECEL1	0	genome.wustl.edu	37	2	233347857	233347857	+	Silent	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	233347857	233347857	C	T	SNP	ECEL1	ENST00000304546	human	ensembl	74_37	-1	known	silent	c.1539	p.P513	0.001	pfam_Peptidase_M13_N	pfam_Peptidase_M13_N,pfam_Peptidase_M13_C,prints_Peptidase_M13_C	-	no_errors	ECEL1	HGNC	ENSG00000171551				25	0	0	14	4	22.2222
EIF4E2	0	genome.wustl.edu	37	2	233431929	233431929	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	233431929	233431929	G	A	SNP	EIF4E2	ENST00000409495	human	ensembl	74_37	+1	putative	missense	c.670	p.V224M	1.000	NULL	pfam_TIF_eIF_4E,superfamily_TIF_eIF4e-like_dom	-	no_errors	EIF4E2	HGNC	ENSG00000135930				149	1	0.666667	93	38	29.0076
DNAJB3	0	genome.wustl.edu	37	2	234652351	234652351	+	RNA	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	234652351	234652351	G	A	SNP	DNAJB3	ENST00000449667	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.709	-	-	-	no_errors	DNAJB3	HGNC	ENSG00000227802				292	1	0.341297	138	60	30.303
MSL3P1	0	genome.wustl.edu	37	2	234775346	234775346	+	RNA	SNP	G	G	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	234775346	234775346	G	C	SNP	MSL3P1	ENST00000438684	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.146	-	-	-	no_errors	MSL3P1	HGNC	ENSG00000224287				54	0	0	23	16	41.0256
AGAP1	0	genome.wustl.edu	37	2	236877258	236877258	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	236877258	236877258	A	G	SNP	AGAP1	ENST00000304032	human	ensembl	74_37	+1	known	missense	c.1636	p.T546A	0.998	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_ArfGAP,pfam_MIRO-like,pfam_Small_GTPase,pfam_Ankyrin_rpt,pfam_Pleckstrin_homology,superfamily_P-loop_NTPase,superfamily_Ankyrin_rpt-contain_dom,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Pleckstrin_homology,smart_ArfGAP,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Pleckstrin_homology,pfscan_ArfGAP,prints_ArfGAP,prints_Small_GTPase	-	no_errors	AGAP1	HGNC	ENSG00000157985				118	0	0	78	9	10.3448
GBX2	0	genome.wustl.edu	37	2	237076119	237076119	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	237076119	237076119	C	T	SNP	GBX2	ENST00000306318	human	ensembl	74_37	-1	known	missense	c.496	p.A166T	0.978	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa	-	no_errors	GBX2	HGNC	ENSG00000168505				30	0	0	21	18	46.1538
COL6A3	0	genome.wustl.edu	37	2	238249551	238249551	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	238249551	238249551	C	T	SNP	COL6A3	ENST00000295550	human	ensembl	74_37	-1	known	missense	c.8008	p.A2670T	0.746	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_VWF_A,pfam_Collagen,pfam_Prot_inh_Kunz-m,superfamily_Prot_inh_Kunz-m,superfamily_Fibronectin_type3,smart_VWF_A,smart_Prot_inh_Kunz-m,pfscan_Fibronectin_type3,pfscan_VWF_A,pfscan_Prot_inh_Kunz-m,prints_Prot_inh_Kunz-m	-	no_errors	COL6A3	HGNC	ENSG00000163359				112	1	0.884956	64	21	24.7059
COL6A3	0	genome.wustl.edu	37	2	238285437	238285437	+	Silent	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	238285437	238285437	C	T	SNP	COL6A3	ENST00000295550	human	ensembl	74_37	-1	known	silent	c.3048	p.V1016	0.000	NULL	pfam_VWF_A,pfam_Collagen,pfam_Prot_inh_Kunz-m,superfamily_Prot_inh_Kunz-m,superfamily_Fibronectin_type3,smart_VWF_A,smart_Prot_inh_Kunz-m,pfscan_Fibronectin_type3,pfscan_VWF_A,pfscan_Prot_inh_Kunz-m,prints_Prot_inh_Kunz-m	-	no_errors	COL6A3	HGNC	ENSG00000163359				551	0	0	286	104	26.6667
PER2	0	genome.wustl.edu	37	2	239162209	239162209	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	239162209	239162209	C	T	SNP	PER2	ENST00000254657	human	ensembl	74_37	-1	known	missense	c.2455	p.A819T	0.001	NULL	pfam_Period_circadian-like_C,pfam_PAS_fold_3,pfam_PAS_fold,superfamily_PAS,smart_PAS,pfscan_PAS	-	no_errors	PER2	HGNC	ENSG00000132326				33	0	0	20	6	23.0769
HDAC4	0	genome.wustl.edu	37	2	239976501	239976501	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	239976501	239976501	T	C	SNP	HDAC4	ENST00000345617	human	ensembl	74_37	-1	known	missense	c.3017	p.Q1006R	1.000	pfam_Arb2_domain,pirsf_Histone_deAcase_II_euk	pfam_His_deacetylse_dom,pfam_Hist_deacetylase_Gln_rich_N,pfam_Arb2_domain,pirsf_Histone_deAcase_II_euk,prints_His_deacetylse	-	no_errors	HDAC4	HGNC	ENSG00000068024				186	0	0	122	7	5.42636
OR6B2	0	genome.wustl.edu	37	2	240969231	240969231	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	240969231	240969231	T	A	SNP	OR6B2	ENST00000402971	human	ensembl	74_37	-1	known	missense	c.616	p.I206F	0.584	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR6B2	HGNC	ENSG00000182083				60	0	0	36	10	21.7391
PASK	0	genome.wustl.edu	37	2	242046073	242046073	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	242046073	242046073	C	T	SNP	PASK	ENST00000358649	human	ensembl	74_37	-1	known	missense	c.3901	p.A1301T	0.001	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_PAS_fold,superfamily_Kinase-like_dom,superfamily_PAS,smart_PAS,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_PAS,pfscan_Prot_kinase_dom,tigrfam_PAS	-	no_errors	PASK	HGNC	ENSG00000115687				191	0	0	100	47	31.9728
HDLBP	0	genome.wustl.edu	37	2	242186183	242186183	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	242186183	242186183	G	A	SNP	HDLBP	ENST00000310931	human	ensembl	74_37	-1	known	missense	c.1934	p.S645F	1.000	smart_KH_dom	pfam_KH_dom_type_1,smart_KH_dom,pfscan_KH_dom_type_1	-	no_errors	HDLBP	HGNC	ENSG00000115677				339	0	0	133	44	24.8588
THAP4	0	genome.wustl.edu	37	2	242524084	242524084	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	242524084	242524084	C	A	SNP	THAP4	ENST00000407315	human	ensembl	74_37	-1	known	missense	c.1671	p.M557I	1.000	pfam_DUF1794,superfamily_Calycin-like	pfam_DUF1794,pfam_Znf_C2CH,superfamily_Calycin-like,smart_Znf_C2CH,pfscan_Znf_C2CH	-	no_errors	THAP4	HGNC	ENSG00000176946				276	0	0	159	51	24.2857
PDCD1	0	genome.wustl.edu	37	2	242794422	242794422	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	242794422	242794422	C	T	SNP	PDCD1	ENST00000334409	human	ensembl	74_37	-1	known	missense	c.520	p.V174M	0.000	NULL	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	-	no_errors	PDCD1	HGNC	ENSG00000188389				47	0	0	21	6	22.2222
NCOA1	0	genome.wustl.edu	37	2	24929467	24929467	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	24929467	24929467	C	A	SNP	NCOA1	ENST00000348332	human	ensembl	74_37	+1	known	missense	c.1128	p.D376E	1.000	pirsf_Nuclear_rcpt_coactivator	pfam_DUF1518,pfam_SRC-1,pfam_Nuc_rcpt_coact_Ncoa-typ,pfam_PAS_fold,superfamily_PAS,superfamily_Nuc_rcpt_coact,superfamily_bHLH_dom,smart_bHLH_dom,smart_PAS,pirsf_Nuclear_rcpt_coactivator,pfscan_PAS,pfscan_bHLH_dom	-	no_errors	NCOA1	HGNC	ENSG00000084676				103	0	0	55	18	24.6575
KIF3C	0	genome.wustl.edu	37	2	26203675	26203675	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	26203675	26203675	A	G	SNP	KIF3C	ENST00000264712	human	ensembl	74_37	-1	known	missense	c.1112	p.V371A	1.000	superfamily_P-loop_NTPase,smart_Kinesin_motor_dom	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF3C	HGNC	ENSG00000084731				150	1	0.662252	73	31	29.8077
ACP1	0	genome.wustl.edu	37	2	272130	272130	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	272130	272130	A	G	SNP	ACP1	ENST00000272065	human	ensembl	74_37	+1	known	missense	c.211	p.M71V	1.000	pfam_Ptyr_pPase_SF,superfamily_Ptyr_pPase_SF,smart_Ptyr_pPase_SF,prints_Tyr_Pase_low_mol_wt_mml	pfam_Ptyr_pPase_SF,superfamily_Ptyr_pPase_SF,smart_Ptyr_pPase_SF,prints_Tyr_Pase_low_mol_wt_mml,prints_Tyr_phospatase/Ars_reductase	-	no_errors	ACP1	HGNC	ENSG00000143727				131	0	0	75	7	8.53659
AGBL5	0	genome.wustl.edu	37	2	27290410	27290410	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	27290410	27290410	G	A	SNP	AGBL5	ENST00000360131	human	ensembl	74_37	+1	known	missense	c.2138	p.R713H	0.788	NULL	pfam_Peptidase_M14	-	no_errors	AGBL5	HGNC	ENSG00000084693				257	0	0	140	63	31.0345
SLC30A3	0	genome.wustl.edu	37	2	27479689	27479689	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	27479689	27479689	T	C	SNP	SLC30A3	ENST00000233535	human	ensembl	74_37	-1	known	missense	c.850	p.T284A	1.000	pfam_Cation_efflux,tigrfam_Cation_efflux	pfam_Cation_efflux,tigrfam_Cation_efflux	-	no_errors	SLC30A3	HGNC	ENSG00000115194				78	0	0	38	21	35.5932
SNX17	0	genome.wustl.edu	37	2	27599213	27599213	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	27599213	27599213	C	T	SNP	SNX17	ENST00000233575	human	ensembl	74_37	+1	known	missense	c.1216	p.R406C	1.000	NULL	pfam_Phox,superfamily_Phox,superfamily_FERM_central,smart_Phox,pfscan_Phox,pfscan_Ras-assoc	-	no_errors	SNX17	HGNC	ENSG00000115234				149	0	0	77	34	30.6306
C2orf71	0	genome.wustl.edu	37	2	29296327	29296327	+	Silent	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	29296327	29296327	C	T	SNP	C2orf71	ENST00000331664	human	ensembl	74_37	-1	known	silent	c.801	p.L267	1.000	NULL	NULL	-	no_errors	C2orf71	HGNC	ENSG00000179270				241	0	0	103	54	34.3949
LCLAT1	0	genome.wustl.edu	37	2	30748623	30748623	+	Splice_Site	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	30748623	30748623	T	C	SNP	LCLAT1	ENST00000309052	human	ensembl	74_37	+1	known	splice_site	c.279+2	e2+2	1.000	-	-	-	no_errors	LCLAT1	HGNC	ENSG00000172954				162	1	0.613497	73	30	29.1262
XDH	0	genome.wustl.edu	37	2	31588901	31588901	+	Silent	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	31588901	31588901	A	G	SNP	XDH	ENST00000379416	human	ensembl	74_37	-1	known	silent	c.2397	p.F799	1.000	pfam_AldOxase/xan_DH_Mopterin-bd,superfamily_AldOxase/xan_DH_Mopterin-bd,pirsf_Ald_Oxase/xanthine_DH	pfam_AldOxase/xan_DH_Mopterin-bd,pfam_Mopterin_DH_FAD-bd,pfam_Ald_Oxase/Xan_DH_a/b,pfam_2Fe-2S-bd,pfam_CO_DH_flav_C,pfam_2Fe-2S_ferredoxin-type,superfamily_AldOxase/xan_DH_Mopterin-bd,superfamily_FAD-bd_2,superfamily_Ald_Oxase/Xan_DH_a/b,superfamily_2Fe-2S-bd,superfamily_CO_DH_flav_C,superfamily_2Fe-2S_ferredoxin-type,pirsf_Ald_Oxase/xanthine_DH,pfscan_2Fe-2S_ferredoxin-type,tigrfam_Xanthine_DH_ssu	-	no_errors	XDH	HGNC	ENSG00000158125				161	0	0	96	36	27.2727
TSSC1	0	genome.wustl.edu	37	2	3197842	3197842	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	3197842	3197842	T	C	SNP	TSSC1	ENST00000382125	human	ensembl	74_37	-1	known	missense	c.749	p.D250G	1.000	pfam_WD40_repeat,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	TSSC1	HGNC	ENSG00000032389				224	0	0	127	10	7.29927
NLRC4	0	genome.wustl.edu	37	2	32449783	32449783	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	32449783	32449783	G	A	SNP	NLRC4	ENST00000360906	human	ensembl	74_37	-1	known	missense	c.2834	p.A945V	0.930	NULL	pfam_CARD,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,pfscan_NACHT_NTPase,pfscan_CARD	-	no_errors	NLRC4	HGNC	ENSG00000091106				165	1	0.60241	72	24	25
LTBP1	0	genome.wustl.edu	37	2	33623566	33623566	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	33623566	33623566	C	T	SNP	LTBP1	ENST00000354476	human	ensembl	74_37	+1	known	missense	c.5123	p.P1708L	0.996	NULL	pfam_EGF-like_Ca-bd_dom,pfam_TB_dom,pfam_EG-like_dom,superfamily_TB_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom	-	no_errors	LTBP1	HGNC	ENSG00000049323				135	0	0	79	7	8.13953
FAM98A	0	genome.wustl.edu	37	2	33813583	33813583	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	33813583	33813583	T	C	SNP	FAM98A	ENST00000238823	human	ensembl	74_37	-1	known	missense	c.341	p.Y114C	1.000	pfam_Uncharacterised_FAM98	pfam_Uncharacterised_FAM98	-	no_errors	FAM98A	HGNC	ENSG00000119812				127	0	0	72	32	30.7692
EIF2AK2	0	genome.wustl.edu	37	2	37347136	37347136	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	37347136	37347136	A	G	SNP	EIF2AK2	ENST00000233057	human	ensembl	74_37	-1	known	missense	c.1214	p.I405T	0.999	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_dsRNA-bd_dom,superfamily_Kinase-like_dom,smart_dsRNA-bd_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_dsRNA-bd_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	EIF2AK2	HGNC	ENSG00000055332				92	0	0	63	7	10
SLC8A1	0	genome.wustl.edu	37	2	40656492	40656492	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	40656492	40656492	A	G	SNP	SLC8A1	ENST00000332839	human	ensembl	74_37	-1	known	missense	c.929	p.L310P	1.000	pfscan_DnaJ_domain,tigrfam_Na_Ca_Ex	pfam_NaCa_Exmemb,pfam_Calx_beta,smart_Calx_beta,pfscan_DnaJ_domain,prints_Na_Ca_Ex,prints_NaCa_exhngr1,tigrfam_Na_Ca_Ex	-	no_errors	SLC8A1	HGNC	ENSG00000183023				395	1	0.252525	212	83	28.1356
THADA	0	genome.wustl.edu	37	2	43808916	43808916	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	43808916	43808916	C	T	SNP	THADA	ENST00000405006	human	ensembl	74_37	-1	known	missense	c.685	p.G229R	0.920	NULL	pfam_DUF2428_death-receptor-like,superfamily_ARM-type_fold	-	no_errors	THADA	HGNC	ENSG00000115970				90	0	0	67	5	6.94444
THADA	0	genome.wustl.edu	37	2	43813540	43813540	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	43813540	43813540	C	A	SNP	THADA	ENST00000405006	human	ensembl	74_37	-1	known	missense	c.533	p.R178I	1.000	NULL	pfam_DUF2428_death-receptor-like,superfamily_ARM-type_fold	-	no_errors	THADA	HGNC	ENSG00000115970				24	0	0	6	4	40
PPM1B	0	genome.wustl.edu	37	2	44428693	44428693	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	44428693	44428693	A	G	SNP	PPM1B	ENST00000282412	human	ensembl	74_37	+1	known	missense	c.355	p.N119D	1.000	pfam_PP2C-like_dom,superfamily_PP2C-like_dom,smart_PP2C-like_dom	pfam_PP2C-like_dom,pfam_PP2C_C,superfamily_PP2C-like_dom,superfamily_PP2C_C,smart_PP2C-like_dom	-	no_errors	PPM1B	HGNC	ENSG00000138032				202	0	0	119	13	9.84848
PPM1B	0	genome.wustl.edu	37	2	44428717	44428717	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	44428717	44428717	A	G	SNP	PPM1B	ENST00000282412	human	ensembl	74_37	+1	known	missense	c.379	p.M127V	1.000	pfam_PP2C-like_dom,superfamily_PP2C-like_dom,smart_PP2C-like_dom	pfam_PP2C-like_dom,pfam_PP2C_C,superfamily_PP2C-like_dom,superfamily_PP2C_C,smart_PP2C-like_dom	-	no_errors	PPM1B	HGNC	ENSG00000138032				226	1	0.440529	86	53	38.1295
PPM1B	0	genome.wustl.edu	37	2	44436356	44436356	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	44436356	44436356	G	A	SNP	PPM1B	ENST00000282412	human	ensembl	74_37	+1	known	missense	c.854	p.R285Q	1.000	pfam_PP2C-like_dom,superfamily_PP2C-like_dom,smart_PP2C-like_dom	pfam_PP2C-like_dom,pfam_PP2C_C,superfamily_PP2C-like_dom,superfamily_PP2C_C,smart_PP2C-like_dom	-	no_errors	PPM1B	HGNC	ENSG00000138032				110	0	0	66	25	27.4725
SIX3	0	genome.wustl.edu	37	2	45169356	45169356	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	45169356	45169356	C	T	SNP	SIX3	ENST00000260653	human	ensembl	74_37	+1	known	missense	c.113	p.A38V	0.940	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	-	no_errors	SIX3	HGNC	ENSG00000138083				84	0	0	32	18	36
PRKCE	0	genome.wustl.edu	37	2	46378314	46378314	+	Silent	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	46378314	46378314	C	T	SNP	PRKCE	ENST00000306156	human	ensembl	74_37	+1	known	silent	c.1866	p.D622	0.810	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Prot_kin_PKC_delta,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pkinase_C,pfam_C2_dom,superfamily_Kinase-like_dom,superfamily_C2_dom,smart_C2_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Prot_kin_PKC_delta,pfscan_C2_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_dom,prints_DAG/PE-bd	-	no_errors	PRKCE	HGNC	ENSG00000171132				78	0	0	47	17	26.5625
EPAS1	0	genome.wustl.edu	37	2	46574037	46574037	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	46574037	46574037	A	G	SNP	EPAS1	ENST00000263734	human	ensembl	74_37	+1	known	missense	c.52	p.K18E	1.000	superfamily_bHLH_dom,pfscan_bHLH_dom	pfam_PAS_fold_3,pfam_HIF-1_TAD_C,pfam_HIF_alpha_subunit,pfam_PAS_fold,superfamily_PAS,superfamily_bHLH_dom,smart_bHLH_dom,smart_PAS,smart_PAC,prints_Nuc_translocat,pfscan_PAS,pfscan_bHLH_dom,tigrfam_PAS	-	no_errors	EPAS1	HGNC	ENSG00000116016				114	0	0	51	26	33.7662
MSH6	0	genome.wustl.edu	37	2	48026471	48026471	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	48026471	48026471	T	C	SNP	MSH6	ENST00000234420	human	ensembl	74_37	+1	known	missense	c.1349	p.V450A	1.000	pfam_DNA_mismatch_repair_MutS-lik_N,superfamily_DNA_mismatch_repair_MutS_N,pirsf_DNA_mismatch_repair_Msh6	pfam_DNA_mismatch_repair_MutS_C,pfam_DNA_mismatch_repair_MutS-lik_N,pfam_DNA_mismatch_repair_MutS_core,pfam_PWWP_dom,pfam_DNA_mismatch_repair_MutS_clamp,pfam_DNA_mmatch_repair_MutS_con_dom,superfamily_DNA_mismatch_repair_MutS_core,superfamily_P-loop_NTPase,superfamily_DNA_mismatch_repair_MutS_N,superfamily_DNA_mmatch_repair_MutS_con_dom,smart_PWWP_dom,smart_DNA_mismatch_repair_MutS_core,smart_DNA_mismatch_repair_MutS_C,pirsf_DNA_mismatch_repair_Msh6,pfscan_PWWP_dom	-	no_errors	MSH6	HGNC	ENSG00000116062				131	0	0	63	36	36.3636
MSH6	0	genome.wustl.edu	37	2	48026560	48026560	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	48026560	48026560	G	C	SNP	MSH6	ENST00000234420	human	ensembl	74_37	+1	known	missense	c.1438	p.V480L	1.000	pfam_DNA_mismatch_repair_MutS-lik_N,superfamily_DNA_mismatch_repair_MutS_N,pirsf_DNA_mismatch_repair_Msh6	pfam_DNA_mismatch_repair_MutS_C,pfam_DNA_mismatch_repair_MutS-lik_N,pfam_DNA_mismatch_repair_MutS_core,pfam_PWWP_dom,pfam_DNA_mismatch_repair_MutS_clamp,pfam_DNA_mmatch_repair_MutS_con_dom,superfamily_DNA_mismatch_repair_MutS_core,superfamily_P-loop_NTPase,superfamily_DNA_mismatch_repair_MutS_N,superfamily_DNA_mmatch_repair_MutS_con_dom,smart_PWWP_dom,smart_DNA_mismatch_repair_MutS_core,smart_DNA_mismatch_repair_MutS_C,pirsf_DNA_mismatch_repair_Msh6,pfscan_PWWP_dom	-	no_errors	MSH6	HGNC	ENSG00000116062				118	0	0	51	33	39.2857
STON1-GTF2A1L	0	genome.wustl.edu	37	2	48809378	48809378	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	48809378	48809378	G	A	SNP	STON1-GTF2A1L	ENST00000309827	human	ensembl	74_37	+1	known	missense	c.1606	p.V536I	1.000	pfam_Clathrin_mu_C,superfamily_Clathrin_mu_C,pfscan_Clathrin_mu_C	pfam_TFIIA_asu/bsu,pfam_Clathrin_mu_C,superfamily_Clathrin_mu_C,superfamily_TFIIA_b-brl,superfamily_TFIIA_a-hlx,pfscan_Clathrin_mu_C,pfscan_SHD	-	no_errors	STON1-GTF2A1L	HGNC	ENSG00000068781				229	0	0	113	52	31.5152
FSHR	0	genome.wustl.edu	37	2	49190590	49190590	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	49190590	49190590	A	G	SNP	FSHR	ENST00000406846	human	ensembl	74_37	-1	known	missense	c.1370	p.V457A	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_GnHR_TM,pfam_LRR-contain_N,pfam_Leu-rich_rpt,smart_LRR-contain_N,pfscan_GPCR_Rhodpsn_7TM,prints_FSH_rcpt,prints_Gphrmn_rcpt_fam,prints_GPCR_Rhodpsn,prints_TSH_rcpt	-	no_errors	FSHR	HGNC	ENSG00000170820				76	0	0	26	19	42.2222
PSME4	0	genome.wustl.edu	37	2	54115035	54115035	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	54115035	54115035	G	A	SNP	PSME4	ENST00000404125	human	ensembl	74_37	-1	known	missense	c.4480	p.L1494F	1.000	superfamily_ARM-type_fold	pfam_DUF3437,superfamily_ARM-type_fold	-	no_errors	PSME4	HGNC	ENSG00000068878				125	0	0	57	32	35.9551
ACYP2	0	genome.wustl.edu	37	2	54362601	54362601	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	54362601	54362601	A	G	SNP	ACYP2	ENST00000394666	human	ensembl	74_37	+1	known	missense	c.70	p.R24G	1.000	pfam_Acylphosphatase-like,superfamily_Acylphosphatase-like,pfscan_Acylphosphatase-like,prints_Acylphosphatase	pfam_Acylphosphatase-like,superfamily_Acylphosphatase-like,pfscan_Acylphosphatase-like,prints_Acylphosphatase	-	no_errors	ACYP2	HGNC	ENSG00000170634				79	0	0	77	6	7.22892
MTIF2	0	genome.wustl.edu	37	2	55464533	55464533	+	Silent	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	55464533	55464533	T	C	SNP	MTIF2	ENST00000263629	human	ensembl	74_37	-1	known	silent	c.1902	p.V634	1.000	superfamily_Transl_B-barrel	pfam_EF_GTP-bd_dom,pfam_TIF_IF2_dom3,pfam_Transl_elong_EFTu/EF1A_2,pfam_MIRO-like,pfam_GTP_binding_domain,pfam_Small_GTPase,pfam_SRP_receptor_beta_su,superfamily_P-loop_NTPase,superfamily_TIF_IF2_dom3,superfamily_Transl_B-barrel,tigrfam_Small_GTP-bd_dom	-	no_errors	MTIF2	HGNC	ENSG00000085760				130	0	0	72	16	18.1818
CCDC88A	0	genome.wustl.edu	37	2	55589575	55589575	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	55589575	55589575	T	C	SNP	CCDC88A	ENST00000436346	human	ensembl	74_37	-1	known	missense	c.496	p.N166D	1.000	pfam_Hook-related_fam	pfam_Hook-related_fam,superfamily_Prefoldin,superfamily_t-SNARE	-	no_errors	CCDC88A	HGNC	ENSG00000115355				39	0	0	24	13	35.1351
SOX11	0	genome.wustl.edu	37	2	5833227	5833227	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	5833227	5833227	A	G	SNP	SOX11	ENST00000322002	human	ensembl	74_37	+1	known	missense	c.374	p.K125R	1.000	pirsf_SOX-12/11/4a	pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pirsf_SOX-12/11/4a,pfscan_HMG_box_dom	-	no_errors	SOX11	HGNC	ENSG00000176887				51	0	0	32	3	8.57143
BCL11A	0	genome.wustl.edu	37	2	60688807	60688807	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	60688807	60688807	A	G	SNP	BCL11A	ENST00000335712	human	ensembl	74_37	-1	known	missense	c.1240	p.C414R	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	BCL11A	HGNC	ENSG00000119866				234	0	0	104	42	28.7671
PAPOLG	0	genome.wustl.edu	37	2	61020810	61020810	+	Silent	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	61020810	61020810	A	G	SNP	PAPOLG	ENST00000238714	human	ensembl	74_37	+1	known	silent	c.1728	p.V576	0.002	pirsf_PolyA_polymerase	pfam_PolA_pol_cen_dom,pfam_PolA_pol_RNA-bd_dom,pfam_Nucleotidyltransferase,superfamily_NuclTrfase_I_C,pirsf_PolyA_polymerase	-	no_errors	PAPOLG	HGNC	ENSG00000115421				81	0	0	60	6	9.09091
USP34	0	genome.wustl.edu	37	2	61455842	61455842	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	61455842	61455842	G	A	SNP	USP34	ENST00000398571	human	ensembl	74_37	-1	known	missense	c.7381	p.L2461F	1.000	superfamily_ARM-type_fold	pfam_Peptidase_C19/C67,superfamily_ARM-type_fold,pfscan_Peptidase_C19/C67	-	no_errors	USP34	HGNC	ENSG00000115464				81	0	0	36	16	30.7692
OTX1	0	genome.wustl.edu	37	2	63281286	63281286	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	63281286	63281286	C	T	SNP	OTX1	ENST00000282549	human	ensembl	74_37	+1	known	missense	c.202	p.R68W	1.000	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	pfam_Otx_TF_C,pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Otx1_TF,prints_Otx_TF	-	no_errors	OTX1	HGNC	ENSG00000115507				182	0	0	102	30	22.7273
CEP68	0	genome.wustl.edu	37	2	65299970	65299970	+	Silent	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	65299970	65299970	C	T	SNP	CEP68	ENST00000377990	human	ensembl	74_37	+1	known	silent	c.1740	p.L580	0.000	NULL	NULL	-	no_errors	CEP68	HGNC	ENSG00000011523				253	0	0	140	80	36.3636
ACTR2	0	genome.wustl.edu	37	2	65495711	65495711	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	65495711	65495711	G	A	SNP	ACTR2	ENST00000377982	human	ensembl	74_37	+1	known	missense	c.1043	p.R348H	1.000	pfam_Actin-related,smart_Actin-related	pfam_Actin-related,smart_Actin-related,prints_Actin-related	-	no_errors	ACTR2	HGNC	ENSG00000138071				72	0	0	47	18	27.6923
LOC101927533	0	genome.wustl.edu	37	2	65728083	65728083	+	RNA	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	65728083	65728083	G	A	SNP	LOC101927533	ENST00000377977	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.981	-	-	-	no_errors	AC074391.1	Clone_based_vega_gene	ENSG00000204929				59	0	0	34	18	34.6154
ENSG00000226488	0	genome.wustl.edu	37	2	6636283	6636283	+	RNA	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	6636283	6636283	C	T	SNP	ENSG00000226488	ENST00000436082	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.402	-	-	-	no_errors	AC021021.2	Clone_based_vega_gene	ENSG00000226488				72	0	0	35	15	30
MCEE	0	genome.wustl.edu	37	2	71351415	71351415	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	71351415	71351415	T	A	SNP	MCEE	ENST00000244217	human	ensembl	74_37	-1	known	missense	c.299	p.H100L	0.999	pfam_Glyas_Fos-R_dOase_dom,tigrfam_MeMalonyl-CoA_epimerase	pfam_Glyas_Fos-R_dOase_dom,tigrfam_MeMalonyl-CoA_epimerase	-	no_errors	MCEE	HGNC	ENSG00000124370				132	0	0	73	20	21.5054
DYSF	0	genome.wustl.edu	37	2	71742841	71742841	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	71742841	71742841	G	A	SNP	DYSF	ENST00000413539	human	ensembl	74_37	+1	known	missense	c.845	p.R282Q	1.000	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	pfam_C2_dom,pfam_Ferlin_B-domain,pfam_FerIin-domain,pfam_Ferlin_A-domain,superfamily_C2_dom,superfamily_MFS_dom_general_subst_transpt,smart_C2_dom,smart_Peroxin/Ferlin,pfscan_C2_dom	-	no_errors	DYSF	HGNC	ENSG00000135636				188	0	0	104	47	31.1258
DYSF	0	genome.wustl.edu	37	2	71743355	71743355	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	71743355	71743355	G	T	SNP	DYSF	ENST00000413539	human	ensembl	74_37	+1	known	nonsense	c.931	p.E311*	1.000	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	pfam_C2_dom,pfam_Ferlin_B-domain,pfam_FerIin-domain,pfam_Ferlin_A-domain,superfamily_C2_dom,superfamily_MFS_dom_general_subst_transpt,smart_C2_dom,smart_Peroxin/Ferlin,pfscan_C2_dom	-	no_errors	DYSF	HGNC	ENSG00000135636				102	0	0	56	19	25.3333
SPR	0	genome.wustl.edu	37	2	73115582	73115582	+	Silent	SNP	C	C	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	73115582	73115582	C	A	SNP	SPR	ENST00000234454	human	ensembl	74_37	+1	known	silent	c.444	p.L148	0.456	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,tigrfam_Sepiapterin_red	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,prints_Glc/ribitol_DH,tigrfam_Sepiapterin_red	-	no_errors	SPR	HGNC	ENSG00000116096				238	1	0.41841	109	53	32.716
EGR4	0	genome.wustl.edu	37	2	73519506	73519506	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	73519506	73519506	G	A	SNP	EGR4	ENST00000545030	human	ensembl	74_37	-1	known	silent	c.849	p.P283	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	EGR4	HGNC	ENSG00000135625				25	0	0	14	5	26.3158
EGR4	0	genome.wustl.edu	37	2	73519605	73519605	+	Silent	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	73519605	73519605	C	T	SNP	EGR4	ENST00000545030	human	ensembl	74_37	-1	known	silent	c.750	p.P250	0.994	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	EGR4	HGNC	ENSG00000135625				23	0	0	8	7	46.6667
ACTG2	0	genome.wustl.edu	37	2	74135805	74135805	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	74135805	74135805	G	A	SNP	ACTG2	ENST00000345517	human	ensembl	74_37	+1	known	nonsense	c.261	p.W87*	1.000	pfam_Actin-related,smart_Actin-related	pfam_Actin-related,smart_Actin-related,prints_Actin-related	-	no_errors	ACTG2	HGNC	ENSG00000163017				79	0	0	53	5	8.62069
TET3	0	genome.wustl.edu	37	2	74273760	74273760	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	74273760	74273760	C	T	SNP	TET3	ENST00000409262	human	ensembl	74_37	+1	known	missense	c.311	p.P104L	0.818	NULL	NULL	-	no_errors	TET3	HGNC	ENSG00000187605				107	0	0	53	21	28.3784
DCTN1	0	genome.wustl.edu	37	2	74597120	74597120	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	74597120	74597120	C	T	SNP	DCTN1	ENST00000361874	human	ensembl	74_37	-1	known	missense	c.1364	p.R455H	1.000	superfamily_Polyketide_synth_docking,superfamily_P-loop_NTPase	pfam_Dynactin,pfam_CAP-Gly_domain,superfamily_CAP-Gly_domain,superfamily_Polyketide_synth_docking,superfamily_P-loop_NTPase,pfscan_CAP-Gly_domain	-	no_errors	DCTN1	HGNC	ENSG00000204843				253	1	0.393701	113	69	37.9121
SEMA4F	0	genome.wustl.edu	37	2	74902879	74902879	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	74902879	74902879	T	C	SNP	SEMA4F	ENST00000357877	human	ensembl	74_37	+1	known	missense	c.1486	p.W496R	0.989	superfamily_Semap_dom,smart_Semap_dom,pfscan_Semap_dom	pfam_Semap_dom,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,pfscan_Semap_dom	-	no_errors	SEMA4F	HGNC	ENSG00000135622				216	0	0	108	40	27.027
MRPL19	0	genome.wustl.edu	37	2	75882354	75882354	+	Silent	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	75882354	75882354	T	C	SNP	MRPL19	ENST00000393909	human	ensembl	74_37	+1	known	silent	c.822	p.D274	0.994	NULL	pfam_Ribosomal_L19,superfamily_Translation_prot_SH3-like,prints_Ribosomal_L19	-	no_errors	MRPL19	HGNC	ENSG00000115364				129	0	0	70	8	10.2564
LRRTM1	0	genome.wustl.edu	37	2	80530382	80530382	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	80530382	80530382	T	G	SNP	LRRTM1	ENST00000295057	human	ensembl	74_37	-1	known	missense	c.563	p.K188T	1.000	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRTM1	HGNC	ENSG00000162951				188	0	0	79	40	33.6134
CD8A	0	genome.wustl.edu	37	2	87017544	87017544	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	87017544	87017544	C	A	SNP	CD8A	ENST00000538832	human	ensembl	74_37	-1	known	missense	c.433	p.D145Y	0.000	pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	-	no_errors	CD8A	HGNC	ENSG00000153563				199	1	0.5	93	41	30.597
SMYD1	0	genome.wustl.edu	37	2	88405999	88405999	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	88405999	88405999	C	G	SNP	SMYD1	ENST00000419482	human	ensembl	74_37	+1	known	missense	c.1137	p.D379E	0.962	NULL	pfam_SET_dom,pfam_Znf_MYND,smart_SET_dom,pfscan_SET_dom,pfscan_Znf_MYND	-	no_errors	SMYD1	HGNC	ENSG00000115593				176	0	0	73	20	21.5054
THNSL2	0	genome.wustl.edu	37	2	88474836	88474836	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	88474836	88474836	G	A	SNP	THNSL2	ENST00000324166	human	ensembl	74_37	+1	known	missense	c.487	p.V163I	1.000	pfam_Trp_syn_b_sub_like_PLP_eny_SF,superfamily_Trp_syn_b_sub_like_PLP_eny_SF,tigrfam_Thr_synthase_like	pfam_Trp_syn_b_sub_like_PLP_eny_SF,superfamily_Trp_syn_b_sub_like_PLP_eny_SF,tigrfam_Thr_synthase_like	-	no_errors	THNSL2	HGNC	ENSG00000144115				74	0	0	39	20	33.8983
THNSL2	0	genome.wustl.edu	37	2	88478470	88478470	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	88478470	88478470	A	T	SNP	THNSL2	ENST00000324166	human	ensembl	74_37	+1	known	missense	c.740	p.D247V	0.791	pfam_Trp_syn_b_sub_like_PLP_eny_SF,superfamily_Trp_syn_b_sub_like_PLP_eny_SF,tigrfam_Thr_synthase_like	pfam_Trp_syn_b_sub_like_PLP_eny_SF,superfamily_Trp_syn_b_sub_like_PLP_eny_SF,tigrfam_Thr_synthase_like	-	no_errors	THNSL2	HGNC	ENSG00000144115				444	1	0.224719	230	95	29.2308
KIDINS220	0	genome.wustl.edu	37	2	8926386	8926386	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	8926386	8926386	C	A	SNP	KIDINS220	ENST00000256707	human	ensembl	74_37	-1	known	missense	c.1889	p.G630V	1.000	pfam_KAP_NTPase	pfam_KAP_NTPase,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,superfamily_SAM/pointed,superfamily_P-loop_NTPase,smart_Ankyrin_rpt,prints_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	KIDINS220	HGNC	ENSG00000134313				369	0	0	166	70	29.661
TEKT4	0	genome.wustl.edu	37	2	95541412	95541412	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	95541412	95541412	A	G	SNP	TEKT4	ENST00000295201	human	ensembl	74_37	+1	known	missense	c.1016	p.H339R	0.928	pfam_Tektin,prints_Tektin	pfam_Tektin,prints_Tektin	-	no_errors	TEKT4	HGNC	ENSG00000163060				159	0	0	99	8	7.47664
FAHD2A	0	genome.wustl.edu	37	2	96072863	96072863	+	Silent	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	96072863	96072863	C	T	SNP	FAHD2A	ENST00000233379	human	ensembl	74_37	+1	known	silent	c.420	p.I140	1.000	pfam_Fumarylacetoacetase_C,superfamily_Fumarylacetoacetase_C-rel	pfam_Fumarylacetoacetase_C,superfamily_Fumarylacetoacetase_C-rel	-	no_errors	FAHD2A	HGNC	ENSG00000115042				168	0	0	76	22	22.449
ASTL	0	genome.wustl.edu	37	2	96789628	96789628	+	Silent	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	96789628	96789628	A	G	SNP	ASTL	ENST00000342380	human	ensembl	74_37	-1	known	silent	c.1257	p.C419	0.000	NULL	pfam_Peptidase_M12A,smart_Peptidase_Metallo,prints_Peptidase_M12A	-	no_errors	ASTL	HGNC	ENSG00000188886				203	0	0	130	13	9.09091
ASTL	0	genome.wustl.edu	37	2	96803388	96803388	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	96803388	96803388	G	A	SNP	ASTL	ENST00000342380	human	ensembl	74_37	-1	known	missense	c.107	p.T36I	0.233	NULL	pfam_Peptidase_M12A,smart_Peptidase_Metallo,prints_Peptidase_M12A	-	no_errors	ASTL	HGNC	ENSG00000188886				211	0	0	136	11	7.48299
ADAM17	0	genome.wustl.edu	37	2	9683306	9683306	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	9683306	9683306	A	G	SNP	ADAM17	ENST00000310823	human	ensembl	74_37	-1	known	missense	c.206	p.L69P	0.875	pfam_Peptidase_M12B_N	pfam_Blood-coag_inhib_Disintegrin,pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,pfscan_Blood-coag_inhib_Disintegrin,pfscan_Peptidase_M12B	-	no_errors	ADAM17	HGNC	ENSG00000151694				167	0	0	124	8	6.06061
ARID5A	0	genome.wustl.edu	37	2	97217936	97217936	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	97217936	97217936	G	A	SNP	ARID5A	ENST00000357485	human	ensembl	74_37	+1	known	silent	c.1671	p.T557	0.019	NULL	pfam_ARID/BRIGHT_DNA-bd,superfamily_ARID/BRIGHT_DNA-bd,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID5A	HGNC	ENSG00000196843				384	1	0.25974	159	116	42.1818
KANSL3	0	genome.wustl.edu	37	2	97267963	97267963	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	97267963	97267963	G	A	SNP	KANSL3	ENST00000431828	human	ensembl	74_37	-1	known	missense	c.2372	p.A791V	1.000	NULL	NULL	-	no_errors	KANSL3	HGNC	ENSG00000114982				21	0	0	14	6	30
FAM178B	0	genome.wustl.edu	37	2	97543757	97543757	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	97543757	97543757	A	G	SNP	FAM178B	ENST00000417561	human	ensembl	74_37	-1	known	missense	c.2321	p.M774T	0.911	NULL	NULL	-	no_errors	FAM178B	HGNC	ENSG00000168754				63	0	0	31	15	32.6087
CNGA3	0	genome.wustl.edu	37	2	98994199	98994199	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	98994199	98994199	G	A	SNP	CNGA3	ENST00000272602	human	ensembl	74_37	+1	known	missense	c.151	p.A51T	0.004	NULL	pfam_cNMP-bd_dom,pfam_Ion_trans_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom	-	no_errors	CNGA3	HGNC	ENSG00000144191				56	0	0	34	9	20.9302
KIAA1211L	0	genome.wustl.edu	37	2	99411026	99411026	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	99411026	99411026	G	A	SNP	KIAA1211L	ENST00000397899	human	ensembl	74_37	-1	known	missense	c.2858	p.A953V	0.988	NULL	NULL	-	no_errors	KIAA1211L	HGNC	ENSG00000196872				243	0	0	122	44	26.506
ESF1	0	genome.wustl.edu	37	20	13740434	13740434	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	20	13740434	13740434	T	A	SNP	ESF1	ENST00000202816	human	ensembl	74_37	-1	known	missense	c.1733	p.Q578L	1.000	NULL	pfam_NUC153	-	no_errors	ESF1	HGNC	ENSG00000089048				44	0	0	33	11	25
ESF1	0	genome.wustl.edu	37	20	13763447	13763447	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	20	13763447	13763447	T	C	SNP	ESF1	ENST00000202816	human	ensembl	74_37	-1	known	missense	c.340	p.K114E	0.349	NULL	pfam_NUC153	-	no_errors	ESF1	HGNC	ENSG00000089048				72	0	0	42	3	6.66667
SEL1L2	0	genome.wustl.edu	37	20	13868465	13868465	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	20	13868465	13868465	A	G	SNP	SEL1L2	ENST00000284951	human	ensembl	74_37	-1	known	missense	c.695	p.L232P	1.000	pfam_Sel1-like,smart_Sel1-like	pfam_Sel1-like,smart_Sel1-like	-	no_errors	SEL1L2	HGNC	ENSG00000101251				197	0	0	141	12	7.84314
SEL1L2	0	genome.wustl.edu	37	20	13912277	13912277	+	Silent	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	20	13912277	13912277	T	C	SNP	SEL1L2	ENST00000284951	human	ensembl	74_37	-1	known	silent	c.255	p.K85	0.014	NULL	pfam_Sel1-like,smart_Sel1-like	-	no_errors	SEL1L2	HGNC	ENSG00000101251				21	0	0	10	5	33.3333
NSFL1C	0	genome.wustl.edu	37	20	1424489	1424489	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	20	1424489	1424489	T	C	SNP	NSFL1C	ENST00000350991	human	ensembl	74_37	-1	known	missense	c.1024	p.M342V	1.000	pfam_UBX,smart_UBX,pfscan_UBX	pfam_SEP_domain,pfam_UBX,superfamily_SEP_domain,superfamily_UBA-like,smart_SEP_domain,smart_UBX,pfscan_UBX	-	no_errors	NSFL1C	HGNC	ENSG00000088833				54	0	0	28	10	26.3158
SNRPB2	0	genome.wustl.edu	37	20	16721539	16721539	+	Silent	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	20	16721539	16721539	T	C	SNP	SNRPB2	ENST00000246071	human	ensembl	74_37	+1	known	silent	c.567	p.I189	1.000	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	SNRPB2	HGNC	ENSG00000125870				164	0	0	87	8	8.42105
CRNKL1	0	genome.wustl.edu	37	20	20018070	20018070	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	20	20018070	20018070	C	T	SNP	CRNKL1	ENST00000377340	human	ensembl	74_37	-1	known	missense	c.2276	p.R759Q	1.000	NULL	pfam_HAT,pfam_Suf,smart_HAT,pfscan_TPR-contain_dom	-	no_errors	CRNKL1	HGNC	ENSG00000101343				479	0	0	252	109	30.1939
C20orf26	0	genome.wustl.edu	37	20	20180469	20180469	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	20	20180469	20180469	C	T	SNP	C20orf26	ENST00000245957	human	ensembl	74_37	+1	known	nonsense	c.1855	p.R619*	1.000	NULL	superfamily_Acyl_CoA_acyltransferase	-	no_errors	C20orf26	HGNC	ENSG00000089101				336	0	0	164	86	34.4
XRN2	0	genome.wustl.edu	37	20	21307158	21307158	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	20	21307158	21307158	G	A	SNP	XRN2	ENST00000377191	human	ensembl	74_37	+1	known	missense	c.234	p.M78I	1.000	pfam_Put_53exo,pirsf_5_3_exoribonuclease_2	pfam_Put_53exo,superfamily_Znf_CCHC,pirsf_5_3_exoribonuclease_2	-	no_errors	XRN2	HGNC	ENSG00000088930				113	0	0	69	11	13.75
PAX1	0	genome.wustl.edu	37	20	21687619	21687619	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	20	21687619	21687619	C	T	SNP	PAX1	ENST00000398485	human	ensembl	74_37	+1	known	missense	c.830	p.A277V	0.922	NULL	pfam_Paired_dom,superfamily_Homeodomain-like,smart_Paired_dom,pfscan_Paired_dom,prints_Paired_dom	-	no_errors	PAX1	HGNC	ENSG00000125813				63	0	0	29	20	40.8163
SSTR4	0	genome.wustl.edu	37	20	23016853	23016853	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	20	23016853	23016853	G	A	SNP	SSTR4	ENST00000255008	human	ensembl	74_37	+1	known	missense	c.733	p.A245T	0.943	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfam_7TM_GPCR_serpentine_rcpt_Srw,pfscan_GPCR_Rhodpsn_7TM,prints_Somatstn_rcpt,prints_Neuropept_B/W_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfam_7TM_GPCR_serpentine_rcpt_Srw,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_Somatstn_rcpt_4,prints_GPCR_Rhodpsn,prints_Somatstn_rcpt,prints_Opioid_rcpt,prints_Neuropept_B/W_rcpt,prints_NPY_rcpt,prints_Somatstn_rcpt_1	-	no_errors	SSTR4	HGNC	ENSG00000132671				212	0	0	102	30	22.7273
CST11	0	genome.wustl.edu	37	20	23433295	23433295	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	20	23433295	23433295	T	C	SNP	CST11	ENST00000377009	human	ensembl	74_37	-1	known	missense	c.154	p.T52A	0.000	pfam_Prot_inh_cystat,smart_Prot_inh_cystat	pfam_Prot_inh_cystat,smart_Prot_inh_cystat	-	no_errors	CST11	HGNC	ENSG00000125831				334	0	0	194	80	29.1971
CST9L	0	genome.wustl.edu	37	20	23548916	23548916	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	20	23548916	23548916	A	G	SNP	CST9L	ENST00000376979	human	ensembl	74_37	-1	known	missense	c.172	p.F58L	0.018	pfam_Prot_inh_cystat	pfam_Prot_inh_cystat	-	no_errors	CST9L	HGNC	ENSG00000101435				90	0	0	63	6	8.69565
TGM6	0	genome.wustl.edu	37	20	2398211	2398211	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	20	2398211	2398211	C	T	SNP	TGM6	ENST00000202625	human	ensembl	74_37	+1	known	missense	c.1670	p.P557L	0.047	pfam_Transglutaminase_C,superfamily_Transglutaminase_C	pfam_Transglutaminase_C,pfam_Transglutaminase_N,pfam_Transglutaminase-like,superfamily_Ig_E-set,superfamily_Transglutaminase_C,smart_Transglutaminase-like	-	no_errors	TGM6	HGNC	ENSG00000166948				30	0	0	17	7	29.1667
ACSS1	0	genome.wustl.edu	37	20	24994649	24994649	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	20	24994649	24994649	G	A	SNP	ACSS1	ENST00000323482	human	ensembl	74_37	-1	known	missense	c.1400	p.A467V	0.294	pfam_AMP-dep_Synth/Lig,tigrfam_Ac_CoA_lig	pfam_AMP-dep_Synth/Lig,tigrfam_Ac_CoA_lig	-	no_errors	ACSS1	HGNC	ENSG00000154930				58	0	0	27	3	10
MYLK2	0	genome.wustl.edu	37	20	30421541	30421541	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	20	30421541	30421541	G	A	SNP	MYLK2	ENST00000375985	human	ensembl	74_37	+1	known	missense	c.1732	p.A578T	1.000	superfamily_Kinase-like_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	MYLK2	HGNC	ENSG00000101306				107	0	0	60	43	41.7476
DUSP15	0	genome.wustl.edu	37	20	30436221	30436221	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	20	30436221	30436221	A	G	SNP	DUSP15	ENST00000278979	human	ensembl	74_37	-1	known	missense	c.874	p.S292P	0.001	NULL	pfam_Dual-sp_phosphatase_cat-dom,superfamily_SMAD_FHA_domain,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Tyr/Dual-sp_Pase,pfscan_Dual-sp_phosphatase_subgr_cat,prints_Atypical_DUSP	-	no_errors	DUSP15	HGNC	ENSG00000149599				71	0	0	54	20	27.027
HCK	0	genome.wustl.edu	37	20	30681809	30681809	+	Silent	SNP	G	G	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	20	30681809	30681809	G	T	SNP	HCK	ENST00000375852	human	ensembl	74_37	+1	known	silent	c.1236	p.T412	0.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_SH2,pfam_SH3_domain,pfam_SH3_2,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_SH3_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_SH2,pfscan_SH3_domain,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2,prints_SH3_domain	-	no_errors	HCK	HGNC	ENSG00000101336				213	0	0	107	47	30.5195
ASXL1	0	genome.wustl.edu	37	20	31021711	31021711	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	20	31021711	31021711	G	A	SNP	ASXL1	ENST00000375687	human	ensembl	74_37	+1	known	silent	c.1710	p.P570	1.000	NULL	NULL	-	no_errors	ASXL1	HGNC	ENSG00000171456				216	1	0.460829	104	44	29.7297
ASXL1	0	genome.wustl.edu	37	20	31024634	31024634	+	Silent	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	20	31024634	31024634	T	C	SNP	ASXL1	ENST00000375687	human	ensembl	74_37	+1	known	silent	c.4119	p.F1373	0.000	NULL	NULL	-	no_errors	ASXL1	HGNC	ENSG00000171456				144	0	0	76	26	25.4902
BPIFB6	0	genome.wustl.edu	37	20	31624279	31624279	+	Silent	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	20	31624279	31624279	C	T	SNP	BPIFB6	ENST00000349552	human	ensembl	74_37	+1	known	silent	c.606	p.T202	0.008	superfamily_Bactericidal_perm-incr_a/b_dom	pfam_Lipid-bd_serum_glycop_N,pfam_Lipid-bd_serum_glycop_C,superfamily_Bactericidal_perm-incr_a/b_dom,smart_Lipid-bd_serum_glycop_C	-	no_errors	BPIFB6	HGNC	ENSG00000167104				333	0	0	139	69	33.1731
MYH7B	0	genome.wustl.edu	37	20	33577634	33577634	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	20	33577634	33577634	C	T	SNP	MYH7B	ENST00000262873	human	ensembl	74_37	+1	novel	missense	c.1805	p.A602V	0.095	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Myosin_S1_N,superfamily_Prefoldin,superfamily_tRNA-bd_arm,superfamily_t-SNARE,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH7B	HGNC	ENSG00000078814				84	0	0	40	25	38.4615
EDEM2	0	genome.wustl.edu	37	20	33722673	33722673	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	20	33722673	33722673	G	A	SNP	EDEM2	ENST00000374492	human	ensembl	74_37	-1	known	silent	c.570	p.T190	1.000	pfam_Glyco_hydro_47,superfamily_Glyco_hydro_47	pfam_Glyco_hydro_47,superfamily_Glyco_hydro_47,prints_Glyco_hydro_47	-	no_errors	EDEM2	HGNC	ENSG00000088298				119	0	0	59	23	28.0488
CEP250	0	genome.wustl.edu	37	20	34060621	34060621	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	20	34060621	34060621	C	T	SNP	CEP250	ENST00000397527	human	ensembl	74_37	+1	known	missense	c.1174	p.R392C	0.993	NULL	superfamily_Prefoldin	-	no_errors	CEP250	HGNC	ENSG00000126001				301	0	0	139	62	30.8458
PHF20	0	genome.wustl.edu	37	20	34519240	34519240	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	20	34519240	34519240	C	T	SNP	PHF20	ENST00000374012	human	ensembl	74_37	+1	known	missense	c.2174	p.A725V	1.000	NULL	pfam_DUF3776,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Tudor,smart_Znf_PHD,pfscan_Znf_C2H2	-	no_errors	PHF20	HGNC	ENSG00000025293				143	0	0	80	11	12.0879
AAR2	0	genome.wustl.edu	37	20	34827850	34827850	+	Silent	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	20	34827850	34827850	T	C	SNP	AAR2	ENST00000320849	human	ensembl	74_37	+1	known	silent	c.60	p.T20	0.245	pfam_AAR2	pfam_AAR2	-	no_errors	AAR2	HGNC	ENSG00000131043				139	0	0	48	28	36.8421
AAR2	0	genome.wustl.edu	37	20	34828400	34828400	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	20	34828400	34828400	A	T	SNP	AAR2	ENST00000320849	human	ensembl	74_37	+1	known	missense	c.610	p.T204S	0.996	pfam_AAR2	pfam_AAR2	-	no_errors	AAR2	HGNC	ENSG00000131043				193	0	0	103	45	30.4054
DLGAP4	0	genome.wustl.edu	37	20	35128652	35128652	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	20	35128652	35128652	A	G	SNP	DLGAP4	ENST00000339266	human	ensembl	74_37	+1	known	missense	c.2150	p.D717G	1.000	pfam_GKAP	pfam_GKAP	-	no_errors	DLGAP4	HGNC	ENSG00000080845				129	0	0	98	10	9.25926
SAMHD1	0	genome.wustl.edu	37	20	35533903	35533903	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	20	35533903	35533903	T	A	SNP	SAMHD1	ENST00000262878	human	ensembl	74_37	-1	known	missense	c.1274	p.N425I	1.000	NULL	pfam_HD_domain,pfam_SAM_2,pfam_SAM_type1,superfamily_SAM/pointed,smart_SAM,smart_HD/PDEase_dom,pfscan_SAM	-	no_errors	SAMHD1	HGNC	ENSG00000101347				94	0	0	74	5	6.32911
MROH8	0	genome.wustl.edu	37	20	35766264	35766264	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	20	35766264	35766264	T	C	SNP	MROH8	ENST00000400441	human	ensembl	74_37	-1	known	missense	c.1598	p.Y533C	0.999	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	MROH8	HGNC	ENSG00000101353				33	0	0	22	14	38.8889
TGM2	0	genome.wustl.edu	37	20	36766734	36766734	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	20	36766734	36766734	C	T	SNP	TGM2	ENST00000361475	human	ensembl	74_37	-1	known	missense	c.1396	p.A466T	0.002	NULL	pfam_Transglutaminase_C,pfam_Transglutaminase_N,pfam_Transglutaminase-like,superfamily_Ig_E-set,superfamily_Transglutaminase_C,smart_Transglutaminase-like	-	no_errors	TGM2	HGNC	ENSG00000198959				108	0	0	66	6	8.33333
SIGLEC1	0	genome.wustl.edu	37	20	3677372	3677372	+	Silent	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	20	3677372	3677372	A	G	SNP	SIGLEC1	ENST00000344754	human	ensembl	74_37	-1	known	silent	c.2544	p.G848	0.001	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,pfam_CD80_C2-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	SIGLEC1	HGNC	ENSG00000088827				193	0	0	100	33	24.812
KIAA1755	0	genome.wustl.edu	37	20	36874452	36874452	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	20	36874452	36874452	G	A	SNP	KIAA1755	ENST00000279024	human	ensembl	74_37	-1	known	missense	c.80	p.T27I	0.969	NULL	superfamily_CRAL-TRIO_dom	-	no_errors	KIAA1755	HGNC	ENSG00000149633				88	0	0	55	9	14.0625
C20orf27	0	genome.wustl.edu	37	20	3735139	3735139	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	20	3735139	3735139	G	A	SNP	C20orf27	ENST00000217195	human	ensembl	74_37	-1	known	missense	c.404	p.A135V	0.958	NULL	NULL	-	no_errors	C20orf27	HGNC	ENSG00000101220				159	0	0	74	39	34.5133
SLC32A1	0	genome.wustl.edu	37	20	37357012	37357012	+	Silent	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	20	37357012	37357012	C	T	SNP	SLC32A1	ENST00000217420	human	ensembl	74_37	+1	known	silent	c.1308	p.R436	1.000	pfam_AA_transpt_TM	pfam_AA_transpt_TM	-	no_errors	SLC32A1	HGNC	ENSG00000101438				93	0	0	39	14	26.4151
ACTR5	0	genome.wustl.edu	37	20	37400389	37400389	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	20	37400389	37400389	G	A	SNP	ACTR5	ENST00000243903	human	ensembl	74_37	+1	known	missense	c.1754	p.R585H	0.991	NULL	pfam_Actin-related,smart_Actin-related	-	no_errors	ACTR5	HGNC	ENSG00000101442				77	0	0	34	14	29.1667
MAVS	0	genome.wustl.edu	37	20	3842924	3842924	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	20	3842924	3842924	G	A	SNP	MAVS	ENST00000358134	human	ensembl	74_37	+1	known	missense	c.316	p.A106T	0.000	NULL	NULL	-	no_errors	MAVS	HGNC	ENSG00000088888				112	0	0	78	13	14.2857
PLCG1	0	genome.wustl.edu	37	20	39788775	39788775	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	20	39788775	39788775	A	T	SNP	PLCG1	ENST00000244007	human	ensembl	74_37	+1	known	missense	c.494	p.D165V	1.000	pirsf_PLC-gamma,pfscan_EF_hand_dom	pfam_PLipase_C_PInositol-sp_X_dom,pfam_SH2,pfam_PLipase_C_Pinositol-sp_Y,pfam_Pleckstrin_homology,pfam_C2_dom,pfam_SH3_domain,pfam_SH3_2,pfam_PLipase_C_EF-hand-like,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_dom,superfamily_SH3_domain,smart_Pleckstrin_homology,smart_PLipase_C_PInositol-sp_X_dom,smart_SH2,smart_SH3_domain,smart_PLipase_C_Pinositol-sp_Y,smart_C2_dom,pirsf_PLC-gamma,pfscan_EF_hand_dom,pfscan_C2_dom,pfscan_Pleckstrin_homology,pfscan_SH2,pfscan_SH3_domain,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y,prints_Pinositol_PLipase_C,prints_SH2	-	no_errors	PLCG1	HGNC	ENSG00000124181				106	0	0	55	17	23.6111
PLCG1	0	genome.wustl.edu	37	20	39792749	39792749	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	20	39792749	39792749	G	A	SNP	PLCG1	ENST00000244007	human	ensembl	74_37	+1	known	missense	c.1125	p.M375I	1.000	pfam_PLipase_C_PInositol-sp_X_dom,superfamily_PLC-like_Pdiesterase_TIM-brl,smart_PLipase_C_PInositol-sp_X_dom,pirsf_PLC-gamma,pfscan_PLipase_C_PInositol-sp_X_dom	pfam_PLipase_C_PInositol-sp_X_dom,pfam_SH2,pfam_PLipase_C_Pinositol-sp_Y,pfam_Pleckstrin_homology,pfam_C2_dom,pfam_SH3_domain,pfam_SH3_2,pfam_PLipase_C_EF-hand-like,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_dom,superfamily_SH3_domain,smart_Pleckstrin_homology,smart_PLipase_C_PInositol-sp_X_dom,smart_SH2,smart_SH3_domain,smart_PLipase_C_Pinositol-sp_Y,smart_C2_dom,pirsf_PLC-gamma,pfscan_EF_hand_dom,pfscan_C2_dom,pfscan_Pleckstrin_homology,pfscan_SH2,pfscan_SH3_domain,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y,prints_Pinositol_PLipase_C,prints_SH2	-	no_errors	PLCG1	HGNC	ENSG00000124181				154	0	0	85	42	33.0709
ZHX3	0	genome.wustl.edu	37	20	39832810	39832810	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	20	39832810	39832810	G	T	SNP	ZHX3	ENST00000309060	human	ensembl	74_37	-1	known	missense	c.747	p.N249K	0.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeobox_dom,pfscan_Homeobox_dom	-	no_errors	ZHX3	HGNC	ENSG00000174306				169	0	0	76	35	31.5315
EMILIN3	0	genome.wustl.edu	37	20	39990930	39990930	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	20	39990930	39990930	T	C	SNP	EMILIN3	ENST00000332312	human	ensembl	74_37	-1	known	missense	c.1279	p.M427V	0.945	NULL	pfam_EMI_domain,pfscan_EMI_domain	-	no_errors	EMILIN3	HGNC	ENSG00000183798				272	0	0	132	41	23.6994
TBC1D20	0	genome.wustl.edu	37	20	422520	422520	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	20	422520	422520	A	T	SNP	TBC1D20	ENST00000354200	human	ensembl	74_37	-1	known	missense	c.505	p.L169I	1.000	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D20	HGNC	ENSG00000125875				155	0	0	79	7	8.13953
MYBL2	0	genome.wustl.edu	37	20	42310462	42310462	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	20	42310462	42310462	G	A	SNP	MYBL2	ENST00000217026	human	ensembl	74_37	+1	known	silent	c.153	p.Q51	0.996	pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	pfam_C-myb_C,pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	MYBL2	HGNC	ENSG00000101057				78	0	0	40	16	28.5714
JPH2	0	genome.wustl.edu	37	20	42744601	42744601	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	20	42744601	42744601	G	A	SNP	JPH2	ENST00000372980	human	ensembl	74_37	-1	known	missense	c.1714	p.R572C	1.000	pirsf_Junctophilin	pfam_MORN,smart_MORN,pirsf_Junctophilin	-	no_errors	JPH2	HGNC	ENSG00000149596				21	0	0	7	8	53.3333
PABPC1L	0	genome.wustl.edu	37	20	43545398	43545398	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	20	43545398	43545398	T	C	SNP	PABPC1L	ENST00000217073	human	ensembl	74_37	+1	known	missense	c.389	p.V130A	1.000	pfam_RRM_dom,smart_RRM_dom_euk,smart_RRM_dom,pfscan_RRM_dom,tigrfam_PABP_1234	pfam_RRM_dom,pfam_PABP_HYD,superfamily_PABP_HYD,smart_RRM_dom,smart_RRM_dom_euk,smart_PABP_HYD,pfscan_RRM_dom,tigrfam_PABP_1234	-	no_errors	PABPC1L	HGNC	ENSG00000101104				376	0	0	196	78	28.4672
SLPI	0	genome.wustl.edu	37	20	43882339	43882339	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	20	43882339	43882339	C	T	SNP	SLPI	ENST00000338380	human	ensembl	74_37	-1	known	missense	c.121	p.A41T	0.000	pfam_WAP-type_4-diS_core,superfamily_WAP-type_4-diS_core,smart_WAP-type_4-diS_core	pfam_WAP-type_4-diS_core,superfamily_WAP-type_4-diS_core,smart_WAP-type_4-diS_core,prints_WAP-type_4-diS_core	-	no_errors	SLPI	HGNC	ENSG00000124107				86	0	0	45	18	28.5714
DNTTIP1	0	genome.wustl.edu	37	20	44433785	44433785	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	20	44433785	44433785	T	C	SNP	DNTTIP1	ENST00000372622	human	ensembl	74_37	+1	known	missense	c.604	p.W202R	1.000	NULL	NULL	-	no_errors	DNTTIP1	HGNC	ENSG00000101457				505	0	0	352	20	5.37634
SNX21	0	genome.wustl.edu	37	20	44469671	44469671	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	20	44469671	44469671	C	T	SNP	SNX21	ENST00000491381	human	ensembl	74_37	+1	known	missense	c.841	p.R281C	0.624	NULL	pfam_Phox,pfam_TPR_1,superfamily_Phox,smart_Phox,pfscan_Phox	-	no_errors	SNX21	HGNC	ENSG00000124104				44	0	0	20	12	37.5
ZNF335	0	genome.wustl.edu	37	20	44596988	44596988	+	Silent	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	20	44596988	44596988	C	T	SNP	ZNF335	ENST00000322927	human	ensembl	74_37	-1	known	silent	c.456	p.V152	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF335	HGNC	ENSG00000198026				284	0	0	178	57	24.2553
ZNF334	0	genome.wustl.edu	37	20	45130649	45130649	+	Silent	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	20	45130649	45130649	A	G	SNP	ZNF334	ENST00000347606	human	ensembl	74_37	-1	known	silent	c.1329	p.C443	0.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF334	HGNC	ENSG00000198185				336	0	0	219	13	5.60345
NCOA3	0	genome.wustl.edu	37	20	46282157	46282157	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	20	46282157	46282157	G	A	SNP	NCOA3	ENST00000371998	human	ensembl	74_37	+1	known	missense	c.4271	p.C1424Y	1.000	pirsf_Nuclear_rcpt_coactivator	pfam_Nuc_rcpt_coact_Ncoa-typ,pfam_SRC-1,pfam_PAS_fold,superfamily_PAS,superfamily_Nuc_rcpt_coact,superfamily_bHLH_dom,smart_bHLH_dom,smart_PAS,pirsf_Nuclear_rcpt_coactivator,pfscan_PAS,pfscan_bHLH_dom	-	no_errors	NCOA3	HGNC	ENSG00000124151				303	0	0	167	90	35.0195
PREX1	0	genome.wustl.edu	37	20	47307598	47307598	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	20	47307598	47307598	C	T	SNP	PREX1	ENST00000371941	human	ensembl	74_37	-1	known	missense	c.1073	p.G358D	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_DH-domain,pfam_DEP_dom,pfam_Pleckstrin_homology,superfamily_DH-domain,superfamily_PDZ,smart_DH-domain,smart_Pleckstrin_homology,smart_DEP_dom,smart_PDZ,pfscan_DEP_dom,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PREX1	HGNC	ENSG00000124126				136	0	0	59	32	35.1648
ZNFX1	0	genome.wustl.edu	37	20	47864756	47864756	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	20	47864756	47864756	C	T	SNP	ZNFX1	ENST00000371752	human	ensembl	74_37	-1	known	missense	c.4805	p.R1602H	0.997	NULL	superfamily_P-loop_NTPase,superfamily_ARM-type_fold,smart_Znf_NFX1	-	no_errors	ZNFX1	HGNC	ENSG00000124201				129	0	0	66	27	29.0323
B4GALT5	0	genome.wustl.edu	37	20	48257180	48257180	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	20	48257180	48257180	C	T	SNP	B4GALT5	ENST00000371711	human	ensembl	74_37	-1	known	missense	c.629	p.R210Q	1.000	pfam_Galactosyl_T_C,prints_Galactosyl_T	pfam_Galactosyl_T_C,prints_Galactosyl_T	-	no_errors	B4GALT5	HGNC	ENSG00000158470				72	0	0	44	17	27.8689
SALL4	0	genome.wustl.edu	37	20	50400912	50400912	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	20	50400912	50400912	G	A	SNP	SALL4	ENST00000217086	human	ensembl	74_37	-1	known	silent	c.3054	p.G1018	0.900	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	SALL4	HGNC	ENSG00000101115				164	0	0	104	6	5.45455
SALL4	0	genome.wustl.edu	37	20	50406825	50406825	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	20	50406825	50406825	G	T	SNP	SALL4	ENST00000217086	human	ensembl	74_37	-1	known	missense	c.2197	p.P733T	0.138	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	SALL4	HGNC	ENSG00000101115				87	0	0	44	17	27.8689
ZNF217	0	genome.wustl.edu	37	20	52199045	52199045	+	Silent	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	20	52199045	52199045	C	T	SNP	ZNF217	ENST00000302342	human	ensembl	74_37	-1	known	silent	c.321	p.P107	0.945	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF217	HGNC	ENSG00000171940				323	0	0	161	62	27.8027
BCAS1	0	genome.wustl.edu	37	20	52645321	52645321	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	20	52645321	52645321	G	A	SNP	BCAS1	ENST00000371440	human	ensembl	74_37	-1	known	silent	c.333	p.A111	0.892	NULL	NULL	-	no_errors	BCAS1	HGNC	ENSG00000064787				116	0	0	57	25	30.4878
PROKR2	0	genome.wustl.edu	37	20	5294607	5294607	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	20	5294607	5294607	C	T	SNP	PROKR2	ENST00000217270	human	ensembl	74_37	-1	known	missense	c.409	p.V137I	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_NPY_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_NPY_rcpt	-	no_errors	PROKR2	HGNC	ENSG00000101292				68	0	0	31	14	31.1111
C20orf85	0	genome.wustl.edu	37	20	56735847	56735847	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	20	56735847	56735847	A	C	SNP	C20orf85	ENST00000371168	human	ensembl	74_37	+1	known	missense	c.383	p.E128A	0.864	NULL	NULL	-	no_errors	C20orf85	HGNC	ENSG00000124237				72	0	0	46	14	23.3333
VAPB	0	genome.wustl.edu	37	20	57019468	57019468	+	RNA	SNP	A	A	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	20	57019468	57019468	A	T	SNP	VAPB	ENST00000265619	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.586	-	-	-	no_errors	VAPB	HGNC	ENSG00000124164				24	0	0	7	2	22.2222
ZNF831	0	genome.wustl.edu	37	20	57766421	57766421	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	20	57766421	57766421	A	G	SNP	ZNF831	ENST00000371030	human	ensembl	74_37	+1	novel	missense	c.347	p.N116S	0.896	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF831	HGNC	ENSG00000124203				58	0	0	34	9	20.9302
SYCP2	0	genome.wustl.edu	37	20	58456998	58456998	+	Splice_Site	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	20	58456998	58456998	A	G	SNP	SYCP2	ENST00000357552	human	ensembl	74_37	-1	known	splice_site	c.2658+2	e26+2	1.000	-	-	-	no_errors	SYCP2	HGNC	ENSG00000196074				60	0	0	35	4	10.2564
SYCP2	0	genome.wustl.edu	37	20	58482429	58482429	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	20	58482429	58482429	G	A	SNP	SYCP2	ENST00000357552	human	ensembl	74_37	-1	known	silent	c.1023	p.Y341	0.975	NULL	NULL	-	no_errors	SYCP2	HGNC	ENSG00000196074				59	0	0	31	12	27.907
LRRN4	0	genome.wustl.edu	37	20	6022631	6022631	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	20	6022631	6022631	C	T	SNP	LRRN4	ENST00000378858	human	ensembl	74_37	-1	known	nonsense	c.1260	p.W420*	0.019	NULL	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Leu-rich_rpt_typical-subtyp,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	LRRN4	HGNC	ENSG00000125872				98	0	0	60	20	25
ADRM1	0	genome.wustl.edu	37	20	60883759	60883759	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	20	60883759	60883759	A	G	SNP	ADRM1	ENST00000253003	human	ensembl	74_37	+1	known	missense	c.1166	p.Q389R	0.984	NULL	pfam_26S_Psome_Ubiquitin-recp_Rpn13	-	no_errors	ADRM1	HGNC	ENSG00000130706				90	0	0	62	4	6.06061
LAMA5	0	genome.wustl.edu	37	20	60903407	60903407	+	Silent	SNP	G	G	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	20	60903407	60903407	G	T	SNP	LAMA5	ENST00000252999	human	ensembl	74_37	-1	known	silent	c.4542	p.P1514	1.000	smart_EGF_laminin	pfam_EGF_laminin,pfam_Laminin_I,pfam_Laminin_G,pfam_Laminin_N,pfam_Laminin_II,pfam_Laminin_B_type_IV,superfamily_ConA-like_lec_gl_sf,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N,pfscan_TNFR/NGFR_Cys_rich_reg	-	no_errors	LAMA5	HGNC	ENSG00000130702				18	0	0	12	3	20
DIDO1	0	genome.wustl.edu	37	20	61525797	61525797	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	20	61525797	61525797	T	C	SNP	DIDO1	ENST00000266070	human	ensembl	74_37	-1	known	missense	c.2540	p.H847R	1.000	NULL	pfam_TFIIS_cen_dom,pfam_SPOC_C,pfam_Znf_PHD-finger,superfamily_TFIIS_cen_dom,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_TFS2M,pfscan_Znf_PHD-finger	-	no_errors	DIDO1	HGNC	ENSG00000101191				137	0	0	94	6	6
DIDO1	0	genome.wustl.edu	37	20	61542719	61542719	+	Silent	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	20	61542719	61542719	C	T	SNP	DIDO1	ENST00000266070	human	ensembl	74_37	-1	known	silent	c.246	p.R82	0.020	NULL	pfam_TFIIS_cen_dom,pfam_SPOC_C,pfam_Znf_PHD-finger,superfamily_TFIIS_cen_dom,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_TFS2M,pfscan_Znf_PHD-finger	-	no_errors	DIDO1	HGNC	ENSG00000101191				73	0	0	31	7	18.4211
YTHDF1	0	genome.wustl.edu	37	20	61835087	61835087	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	20	61835087	61835087	A	G	SNP	YTHDF1	ENST00000370339	human	ensembl	74_37	-1	known	missense	c.205	p.S69P	1.000	NULL	pfam_YTH_domain,pfscan_YTH_domain	-	no_errors	YTHDF1	HGNC	ENSG00000149658				113	1	0.877193	77	7	8.33333
HELZ2	0	genome.wustl.edu	37	20	62194856	62194856	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	20	62194856	62194856	G	A	SNP	HELZ2	ENST00000467148	human	ensembl	74_37	-1	known	silent	c.5319	p.Y1773	0.442	NULL	superfamily_P-loop_NTPase	-	no_errors	HELZ2	HGNC	ENSG00000130589				8	0	0	0	3	100
RTEL1	0	genome.wustl.edu	37	20	62326159	62326159	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	20	62326159	62326159	G	A	SNP	RTEL1	ENST00000318100	human	ensembl	74_37	+1	known	missense	c.3175	p.A1059T	0.000	NULL	pfam_DEAD_2,superfamily_P-loop_NTPase,smart_Helicase-like_DEXD_c2,smart_ATP-dep_Helicase_C,pfscan_Helic_SF1/SF2_ATP-bd_DinG/Rad3,tigrfam_DNA_helicase_DNA-repair_Rad3	-	no_errors	RTEL1	HGNC	ENSG00000258366				89	0	0	49	17	25.7576
ARFRP1	0	genome.wustl.edu	37	20	62331872	62331872	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	20	62331872	62331872	G	A	SNP	ARFRP1	ENST00000324228	human	ensembl	74_37	-1	known	missense	c.529	p.R177C	1.000	pfam_Small_GTPase_ARF/SAR,pfam_Small_GTPase,superfamily_P-loop_NTPase,smart_Small_GTPase_SAR1,smart_Small_GTPase_ARF,smart_Small_GTPase_Rab_type,prints_Small_GTPase,prints_Small_GTPase_ARF/SAR,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase_ARF/SAR,pfam_Small_GTPase,pfam_MIRO-like,pfam_Gprotein_alpha_su,pfam_SRP_receptor_beta_su,pfam_Gtr1_RagA,superfamily_P-loop_NTPase,smart_Small_GTPase_SAR1,smart_Small_GTPase_ARF,smart_Small_GTPase_Rab_type,prints_Small_GTPase,prints_Small_GTPase_ARF/SAR,tigrfam_Small_GTP-bd_dom	-	no_errors	ARFRP1	HGNC	ENSG00000101246				137	0	0	58	25	30.1205
RGS19	0	genome.wustl.edu	37	20	62708243	62708243	+	RNA	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	20	62708243	62708243	T	C	SNP	RGS19	ENST00000493165	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	RGS19	HGNC	ENSG00000171700				16	0	0	7	8	53.3333
PLCB4	0	genome.wustl.edu	37	20	9454009	9454009	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	20	9454009	9454009	G	A	SNP	PLCB4	ENST00000334005	human	ensembl	74_37	+1	known	silent	c.3456	p.E1152	1.000	pirsf_PLC-beta	pirsf_PLC-beta,pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,pfam_PLC-beta_CS,pfam_C2_dom,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_dom,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_dom,prints_Pinositol_PLipase_C,pfscan_C2_dom,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y	-	no_errors	PLCB4	HGNC	ENSG00000101333				99	0	0	39	23	37.0968
TPTE	0	genome.wustl.edu	37	21	10942922	10942922	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	21	10942922	10942922	C	T	SNP	TPTE	ENST00000361285	human	ensembl	74_37	-1	known	missense	c.665	p.R222Q	1.000	NULL	pfam_Tensin_phosphatase_C2-dom,pfam_Dual-sp_phosphatase_cat-dom,pfam_Ion_trans_dom,superfamily_C2_dom,pfscan_Tyr/Dual-sp_Pase,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	TPTE	HGNC	ENSG00000166157				145	0	0	78	16	17.0213
TPTE	0	genome.wustl.edu	37	21	10942995	10942995	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	21	10942995	10942995	G	A	SNP	TPTE	ENST00000361285	human	ensembl	74_37	-1	known	nonsense	c.592	p.R198*	1.000	pfam_Ion_trans_dom	pfam_Tensin_phosphatase_C2-dom,pfam_Dual-sp_phosphatase_cat-dom,pfam_Ion_trans_dom,superfamily_C2_dom,pfscan_Tyr/Dual-sp_Pase,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	TPTE	HGNC	ENSG00000166157				92	0	0	53	11	17.1875
BTG3	0	genome.wustl.edu	37	21	18981144	18981144	+	RNA	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	21	18981144	18981144	T	C	SNP	BTG3	ENST00000464058	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	BTG3	HGNC	ENSG00000154640				37	0	0	16	4	20
TMPRSS15	0	genome.wustl.edu	37	21	19775802	19775802	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	21	19775802	19775802	G	A	SNP	TMPRSS15	ENST00000284885	human	ensembl	74_37	-1	known	silent	c.138	p.S46	0.003	NULL	pfam_Peptidase_S1,pfam_CUB_dom,pfam_MAM_dom,pfam_SEA_dom,pfam_LDrepeatLR_classA_rpt,pfam_Peptidase_S1A_nudel,pfam_SRCR,superfamily_Trypsin-like_Pept_dom,superfamily_ConA-like_lec_gl_sf,superfamily_CUB_dom,superfamily_LDrepeatLR_classA_rpt,superfamily_Srcr_rcpt-rel,smart_SEA_dom,smart_LDrepeatLR_classA_rpt,smart_CUB_dom,smart_MAM_dom,smart_Srcr_rcpt-rel,smart_Peptidase_S1,pfscan_CUB_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_MAM_dom,pfscan_SEA_dom,pfscan_SRCR,pfscan_Peptidase_S1,prints_Peptidase_S1A,prints_LDrepeatLR_classA_rpt	-	no_errors	TMPRSS15	HGNC	ENSG00000154646				226	1	0.440529	107	50	31.8471
MRPL39	0	genome.wustl.edu	37	21	26965134	26965134	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	21	26965134	26965134	A	G	SNP	MRPL39	ENST00000307301	human	ensembl	74_37	-1	known	missense	c.911	p.V304A	0.008	superfamily_Thr/Ala-tRNA-synth_IIc_edit	superfamily_Thr/Ala-tRNA-synth_IIc_edit,superfamily_TGS-like	-	no_errors	MRPL39	HGNC	ENSG00000154719				82	0	0	36	11	23.4043
ADAMTS5	0	genome.wustl.edu	37	21	28306946	28306946	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	21	28306946	28306946	C	T	SNP	ADAMTS5	ENST00000284987	human	ensembl	74_37	-1	known	missense	c.1528	p.G510S	0.992	smart_ADAM_Cys-rich	pfam_ADAM_spacer1,pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_ADAM_Cys-rich,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Pept_M12B_ADAM-TS5,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS5	HGNC	ENSG00000154736				100	0	0	33	23	41.0714
USP16	0	genome.wustl.edu	37	21	30414846	30414846	+	Silent	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	21	30414846	30414846	T	C	SNP	USP16	ENST00000334352	human	ensembl	74_37	+1	known	silent	c.1176	p.D392	1.000	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	pfam_Peptidase_C19/C67,pfam_Znf_UBP,smart_Znf_UBP,pfscan_Znf_UBP,pfscan_Peptidase_C19/C67	-	no_errors	USP16	HGNC	ENSG00000156256				165	0	0	97	8	7.61905
CCT8	0	genome.wustl.edu	37	21	30432959	30432959	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	21	30432959	30432959	T	C	SNP	CCT8	ENST00000286788	human	ensembl	74_37	-1	known	missense	c.1472	p.D491G	1.000	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1,tigrfam_Chap_CCT_theta	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1,superfamily_GroEL-like_apical_dom,prints_Chaperone_TCP-1,tigrfam_Chap_CCT_theta	-	no_errors	CCT8	HGNC	ENSG00000156261				180	0	0	104	45	30.2013
CCT8	0	genome.wustl.edu	37	21	30439211	30439211	+	Splice_Site	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	21	30439211	30439211	C	T	SNP	CCT8	ENST00000286788	human	ensembl	74_37	-1	known	splice_site	c.562+1	e5+1	1.000	-	-	-	no_errors	CCT8	HGNC	ENSG00000156261				90	0	0	38	26	40.625
BACH1	0	genome.wustl.edu	37	21	30693751	30693751	+	Silent	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	21	30693751	30693751	C	T	SNP	BACH1	ENST00000286800	human	ensembl	74_37	+1	known	silent	c.150	p.S50	0.000	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like	pfam_BTB_POZ,pfam_bZIP,superfamily_BTB/POZ_fold,superfamily_TF_DNA-bd,smart_BTB/POZ-like,smart_bZIP,pfscan_BTB/POZ-like,pfscan_bZIP	-	no_errors	BACH1	HGNC	ENSG00000156273				148	1	0.671141	64	41	39.0476
KRTAP19-7	0	genome.wustl.edu	37	21	31933570	31933570	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	21	31933570	31933570	G	A	SNP	KRTAP19-7	ENST00000334849	human	ensembl	74_37	-1	known	silent	c.39	p.Y13	0.003	pfam_KRTAP_type6/8/16/19/20	pfam_KRTAP_type6/8/16/19/20	-	no_errors	KRTAP19-7	HGNC	ENSG00000244362				198	1	0.502513	83	38	31.405
TIAM1	0	genome.wustl.edu	37	21	32638371	32638371	+	Silent	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	21	32638371	32638371	A	G	SNP	TIAM1	ENST00000286827	human	ensembl	74_37	-1	known	silent	c.918	p.I306	0.998	NULL	pfam_DH-domain,pfam_Pleckstrin_homology,pfam_Raf-like_ras-bd,pfam_PDZ,superfamily_DH-domain,superfamily_PDZ,smart_Pleckstrin_homology,smart_Raf-like_ras-bd,smart_PDZ,smart_DH-domain,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_Raf-like_ras-bd,pfscan_DH-domain	-	no_errors	TIAM1	HGNC	ENSG00000156299				141	0	0	64	37	36.6337
OLIG2	0	genome.wustl.edu	37	21	34399391	34399391	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	21	34399391	34399391	G	A	SNP	OLIG2	ENST00000333337	human	ensembl	74_37	+1	known	missense	c.221	p.G74D	0.998	NULL	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	OLIG2	HGNC	ENSG00000205927				29	0	0	10	15	60
IFNAR1	0	genome.wustl.edu	37	21	34725143	34725143	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	21	34725143	34725143	C	T	SNP	IFNAR1	ENST00000270139	human	ensembl	74_37	+1	known	missense	c.1223	p.A408V	0.678	pfam_Interferon_alpha/beta_rcpt_bsu,superfamily_Fibronectin_type3,pirsf_Interferon_alpha/beta_rcpt-1	pfam_Interferon_alpha/beta_rcpt_bsu,superfamily_Fibronectin_type3,pirsf_Interferon_alpha/beta_rcpt-1	-	no_errors	IFNAR1	HGNC	ENSG00000142166				205	0	0	102	37	26.6187
ITSN1	0	genome.wustl.edu	37	21	35169909	35169909	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	21	35169909	35169909	G	A	SNP	ITSN1	ENST00000381285	human	ensembl	74_37	+1	known	missense	c.2179	p.A727T	0.009	NULL	pfam_SH3_domain,pfam_SH3_2,pfam_DH-domain,pfam_C2_dom,superfamily_DH-domain,superfamily_C2_dom,superfamily_SH3_domain,superfamily_P-loop_NTPase,smart_EPS15_homology,smart_EF_hand_dom,smart_SH3_domain,smart_DH-domain,smart_Pleckstrin_homology,smart_C2_dom,pfscan_EF_hand_dom,pfscan_EPS15_homology,pfscan_C2_dom,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_DH-domain,prints_SH3_domain,prints_p67phox	-	no_errors	ITSN1	HGNC	ENSG00000205726				92	0	0	67	8	10.6667
CBR3	0	genome.wustl.edu	37	21	37507764	37507764	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	21	37507764	37507764	G	A	SNP	CBR3	ENST00000290354	human	ensembl	74_37	+1	known	missense	c.274	p.A92T	0.999	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,prints_Glc/ribitol_DH,prints_DH_sc/Rdtase_SDR	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,prints_Glc/ribitol_DH,prints_DH_sc/Rdtase_SDR	-	no_errors	CBR3	HGNC	ENSG00000159231				46	0	0	16	7	30.4348
MORC3	0	genome.wustl.edu	37	21	37710133	37710133	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	21	37710133	37710133	G	A	SNP	MORC3	ENST00000400485	human	ensembl	74_37	+1	known	missense	c.349	p.V117I	0.988	superfamily_HATPase_ATP-bd	pfam_Znf_CW,pfam_HATPase_ATP-bd,superfamily_HATPase_ATP-bd,pfscan_Znf_CW	-	no_errors	MORC3	HGNC	ENSG00000159256				250	0	0	124	50	28.7356
CHAF1B	0	genome.wustl.edu	37	21	37759988	37759988	+	Silent	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	21	37759988	37759988	T	C	SNP	CHAF1B	ENST00000314103	human	ensembl	74_37	+1	known	silent	c.219	p.R73	0.855	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Gprotein_B	-	no_errors	CHAF1B	HGNC	ENSG00000159259				377	1	0.26455	218	73	25.0859
SIM2	0	genome.wustl.edu	37	21	38081561	38081561	+	RNA	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	21	38081561	38081561	C	T	SNP	SIM2	ENST00000460783	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SIM2	HGNC	ENSG00000159263				14	0	0	4	7	63.6364
TTC3	0	genome.wustl.edu	37	21	38529006	38529006	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	21	38529006	38529006	A	C	SNP	TTC3	ENST00000354749	human	ensembl	74_37	+1	known	missense	c.2790	p.K930N	0.911	NULL	pfam_Znf_C3HC4_RING-type,superfamily_DEATH-like_dom,smart_TPR_repeat,smart_Znf_RING,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_Znf_RING	-	no_errors	TTC3	HGNC	ENSG00000182670				186	0	0	82	43	34.4
DYRK1A	0	genome.wustl.edu	37	21	38845110	38845110	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	21	38845110	38845110	G	A	SNP	DYRK1A	ENST00000398960	human	ensembl	74_37	+1	known	silent	c.135	p.Q45	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	DYRK1A	HGNC	ENSG00000157540				213	0	0	108	43	28.4768
KCNJ6	0	genome.wustl.edu	37	21	39087116	39087116	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	21	39087116	39087116	G	A	SNP	KCNJ6	ENST00000288309	human	ensembl	74_37	-1	known	missense	c.344	p.A115V	1.000	pfam_K_chnl_inward-rec_Kir,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir	pfam_K_chnl_inward-rec_Kir,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir3.2	-	no_errors	KCNJ6	HGNC	ENSG00000157542				317	0	0	135	63	31.8182
DSCR4	0	genome.wustl.edu	37	21	39427042	39427042	+	Nonsense_Mutation	SNP	A	A	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	21	39427042	39427042	A	T	SNP	DSCR4	ENST00000328264	human	ensembl	74_37	-1	known	nonsense	c.264	p.C88*	0.000	NULL	NULL	-	no_errors	DSCR4	HGNC	ENSG00000184029				198	0	0	116	53	31.3609
ERG	0	genome.wustl.edu	37	21	39755781	39755781	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	21	39755781	39755781	G	A	SNP	ERG	ENST00000398919	human	ensembl	74_37	-1	known	silent	c.1005	p.S335	1.000	pfam_Ets_dom,smart_Ets_dom,pfscan_Ets_dom	pfam_Ets_dom,pfam_Pointed_dom,superfamily_SAM/pointed,smart_Pointed_dom,smart_Ets_dom,pfscan_Ets_dom,prints_Ets_dom	-	no_errors	ERG	HGNC	ENSG00000157554				149	0	0	83	33	28.4483
RIPK4	0	genome.wustl.edu	37	21	43161435	43161435	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	21	43161435	43161435	G	A	SNP	RIPK4	ENST00000352483	human	ensembl	74_37	-1	known	missense	c.2062	p.P688S	0.876	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Ankyrin_rpt-contain_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Prot_kinase_dom,prints_Ankyrin_rpt,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	RIPK4	HGNC	ENSG00000183421				155	0	0	82	11	11.828
C2CD2	0	genome.wustl.edu	37	21	43342131	43342131	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	21	43342131	43342131	C	A	SNP	C2CD2	ENST00000380486	human	ensembl	74_37	-1	known	missense	c.442	p.G148C	0.000	NULL	pfam_C2_dom,superfamily_C2_dom	-	no_errors	C2CD2	HGNC	ENSG00000157617				114	0	0	52	26	33.3333
ZBTB21	0	genome.wustl.edu	37	21	43414117	43414117	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	21	43414117	43414117	A	T	SNP	ZBTB21	ENST00000310826	human	ensembl	74_37	-1	known	missense	c.88	p.C30S	1.000	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB21	HGNC	ENSG00000173276				242	0	0	118	56	32.1839
SLC37A1	0	genome.wustl.edu	37	21	43955631	43955631	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	21	43955631	43955631	G	A	SNP	SLC37A1	ENST00000352133	human	ensembl	74_37	+1	known	silent	c.321	p.L107	0.991	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC37A1	HGNC	ENSG00000160190				259	0	0	148	69	31.7972
PKNOX1	0	genome.wustl.edu	37	21	44430270	44430270	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	21	44430270	44430270	T	C	SNP	PKNOX1	ENST00000291547	human	ensembl	74_37	+1	known	missense	c.287	p.F96S	1.000	NULL	pfam_Homeobox_dom,pfam_Homeobox_KN_domain,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	-	no_errors	PKNOX1	HGNC	ENSG00000160199				111	0	0	61	4	6.15385
SIK1	0	genome.wustl.edu	37	21	44840316	44840316	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	21	44840316	44840316	C	T	SNP	SIK1	ENST00000270162	human	ensembl	74_37	-1	known	missense	c.770	p.R257H	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Ser/Thr_kinase_SIK1/2,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Ser/Thr_kinase_SIK1/2,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	SIK1	HGNC	ENSG00000142178				51	0	0	16	16	50
PDXK	0	genome.wustl.edu	37	21	45161602	45161602	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	21	45161602	45161602	A	G	SNP	PDXK	ENST00000291565	human	ensembl	74_37	+1	known	missense	c.197	p.Y66C	1.000	pfam_PfkB_dom,tigrfam_PyrdxlP_synth_PyrdxlKinase	pfam_PfkB_dom,pfam_HMP-P_kinase-1,tigrfam_PyrdxlP_synth_PyrdxlKinase	-	no_errors	PDXK	HGNC	ENSG00000160209				66	0	0	58	5	7.93651
PWP2	0	genome.wustl.edu	37	21	45534550	45534550	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	21	45534550	45534550	C	T	SNP	PWP2	ENST00000291576	human	ensembl	74_37	+1	known	missense	c.371	p.A124V	1.000	superfamily_Quinonprotein_ADH-like_supfam	pfam_WD40_repeat,pfam_SSU_processome_Utp12,superfamily_Quinonprotein_ADH-like_supfam,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	PWP2	HGNC	ENSG00000241945				154	0	0	81	48	37.2093
C21orf2	0	genome.wustl.edu	37	21	45752928	45752928	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	21	45752928	45752928	G	A	SNP	C21orf2	ENST00000339818	human	ensembl	74_37	-1	known	silent	c.361	p.L121	1.000	smart_U2A'_phosphoprotein32A_C	smart_U2A'_phosphoprotein32A_C	-	no_errors	C21orf2	HGNC	ENSG00000160226				32	0	0	15	11	42.3077
TSPEAR	0	genome.wustl.edu	37	21	45953666	45953666	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	21	45953666	45953666	G	A	SNP	TSPEAR	ENST00000323084	human	ensembl	74_37	-1	known	silent	c.444	p.R148	0.000	superfamily_ConA-like_lec_gl_sf,smart_Laminin_G	pfam_EPTP,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,pfscan_EAR	-	no_errors	TSPEAR	HGNC	ENSG00000175894				71	0	0	28	25	47.1698
KRTAP10-6	0	genome.wustl.edu	37	21	46011724	46011724	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	21	46011724	46011724	G	A	SNP	KRTAP10-6	ENST00000400368	human	ensembl	74_37	-1	known	silent	c.642	p.C214	0.733	NULL	NULL	-	no_errors	KRTAP10-6	HGNC	ENSG00000188155				345	1	0.289017	191	61	24.2063
KRTAP10-9	0	genome.wustl.edu	37	21	46047214	46047214	+	Silent	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	21	46047214	46047214	C	T	SNP	KRTAP10-9	ENST00000397911	human	ensembl	74_37	+1	known	silent	c.126	p.C42	0.711	NULL	NULL	-	no_errors	KRTAP10-9	HGNC	ENSG00000221837				162	0	0	74	27	26.7327
ITGB2	0	genome.wustl.edu	37	21	46313382	46313382	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	21	46313382	46313382	G	A	SNP	ITGB2	ENST00000302347	human	ensembl	74_37	-1	known	silent	c.1161	p.S387	0.999	pirsf_Integrin_bsu,pfam_Integrin_bsu_N,smart_Integrin_bsu_N	pirsf_Integrin_bsu,pfam_Integrin_bsu_N,pfam_Integrin_bsu_tail,pfam_Integrin_bsu_cyt_dom,pfam_EGF_extracell,superfamily_Integrin_bsu_tail,superfamily_Plexin-like_fold,smart_Plexin-like_fold,smart_Integrin_bsu_N,prints_Integrin_bsu	-	no_errors	ITGB2	HGNC	ENSG00000160255				320	0	0	216	20	8.47458
FAM207A	0	genome.wustl.edu	37	21	46363606	46363606	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	21	46363606	46363606	C	T	SNP	FAM207A	ENST00000291634	human	ensembl	74_37	+1	known	missense	c.137	p.A46V	0.014	NULL	NULL	-	no_errors	FAM207A	HGNC	ENSG00000160256				150	0	0	89	31	25.8333
ADARB1	0	genome.wustl.edu	37	21	46591577	46591577	+	Silent	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	21	46591577	46591577	T	C	SNP	ADARB1	ENST00000360697	human	ensembl	74_37	+1	known	silent	c.6	p.D2	0.018	NULL	pfam_A_deamin,pfam_dsRNA-bd_dom,superfamily_Cytokine_IL1-like,smart_dsRNA-bd_dom,smart_A_deamin,pfscan_dsRNA-bd_dom,pfscan_A_deamin	-	no_errors	ADARB1	HGNC	ENSG00000197381				111	0	0	86	8	8.51064
MCM3AP	0	genome.wustl.edu	37	21	47685905	47685905	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	21	47685905	47685905	A	G	SNP	MCM3AP	ENST00000291688	human	ensembl	74_37	-1	known	missense	c.2965	p.Y989H	1.000	NULL	pfam_SAC3/GANP/Nin1/mts3/eIF-3-p25	-	no_errors	MCM3AP	HGNC	ENSG00000160294				310	0	0	123	90	42.2535
YBEY	0	genome.wustl.edu	37	21	47711299	47711299	+	Silent	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	21	47711299	47711299	T	C	SNP	YBEY	ENST00000329319	human	ensembl	74_37	+1	known	silent	c.262	p.L88	0.916	pfam_YbeY,tigrfam_YbeY	pfam_YbeY,tigrfam_YbeY	-	no_errors	YBEY	HGNC	ENSG00000182362				149	0	0	76	30	28.3019
C21orf58	0	genome.wustl.edu	37	21	47738113	47738113	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	21	47738113	47738113	G	A	SNP	C21orf58	ENST00000291691	human	ensembl	74_37	-1	known	missense	c.122	p.A41V	0.000	NULL	NULL	-	no_errors	C21orf58	HGNC	ENSG00000160298				153	0	0	84	7	7.69231
DIP2A	0	genome.wustl.edu	37	21	47961794	47961794	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	21	47961794	47961794	A	G	SNP	DIP2A	ENST00000318711	human	ensembl	74_37	+1	known	missense	c.2165	p.Q722R	1.000	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig,pfam_DMAP1-bd	-	no_errors	DIP2A	HGNC	ENSG00000160305				98	0	0	81	6	6.89655
TEKT4P2	0	genome.wustl.edu	37	21	9907293	9907293	+	RNA	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	21	9907293	9907293	T	C	SNP	TEKT4P2	ENST00000416067	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.998	-	-	-	no_errors	TEKT4P2	HGNC	ENSG00000188681				72	0	0	38	5	11.6279
XKR3	0	genome.wustl.edu	37	22	17264918	17264918	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	22	17264918	17264918	G	T	SNP	XKR3	ENST00000331428	human	ensembl	74_37	-1	known	missense	c.971	p.A324E	1.000	pfam_Transport_prot_XK	pfam_Transport_prot_XK	-	no_errors	XKR3	HGNC	ENSG00000172967				236	0	0	129	9	6.52174
XKR3	0	genome.wustl.edu	37	22	17265193	17265193	+	Silent	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	22	17265193	17265193	C	T	SNP	XKR3	ENST00000331428	human	ensembl	74_37	-1	known	silent	c.696	p.P232	0.006	pfam_Transport_prot_XK	pfam_Transport_prot_XK	-	no_errors	XKR3	HGNC	ENSG00000172967				69	0	0	25	15	37.5
CECR1	0	genome.wustl.edu	37	22	17662465	17662465	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	22	17662465	17662465	A	G	SNP	CECR1	ENST00000262607	human	ensembl	74_37	-1	known	missense	c.1444	p.Y482H	1.000	pfam_A/AMP_deaminase_dom,tigrfam_Ad_deam-like	pfam_A/AMP_deaminase_dom,pfam_A_deaminase_N,tigrfam_Ad_deam-like	-	no_errors	CECR1	HGNC	ENSG00000093072				366	0	0	251	29	10.3571
CECR2	0	genome.wustl.edu	37	22	17984004	17984004	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	22	17984004	17984004	A	G	SNP	CECR2	ENST00000400573	human	ensembl	74_37	+1	novel	missense	c.760	p.S254G	1.000	NULL	pfam_Bromodomain,superfamily_Bromodomain,smart_Bromodomain,prints_Bromodomain,pfscan_Bromodomain	-	no_errors	CECR2	HGNC	ENSG00000099954				69	0	0	29	14	32.5581
ATP6V1E1	0	genome.wustl.edu	37	22	18111420	18111420	+	RNA	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	22	18111420	18111420	C	T	SNP	ATP6V1E1	ENST00000460085	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	ATP6V1E1	HGNC	ENSG00000131100				266	2	0.746269	142	77	35.1598
TSSK2	0	genome.wustl.edu	37	22	19119658	19119658	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	22	19119658	19119658	T	C	SNP	TSSK2	ENST00000399635	human	ensembl	74_37	+1	known	missense	c.746	p.I249T	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	TSSK2	HGNC	ENSG00000206203				159	1	0.625	79	35	30.7018
SLC25A1	0	genome.wustl.edu	37	22	19165307	19165307	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	22	19165307	19165307	A	G	SNP	SLC25A1	ENST00000215882	human	ensembl	74_37	-1	known	missense	c.374	p.L125P	1.000	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier,prints_Mit_carrier	-	no_errors	SLC25A1	HGNC	ENSG00000100075				44	0	0	26	23	46.9388
HIRA	0	genome.wustl.edu	37	22	19341012	19341012	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	22	19341012	19341012	G	A	SNP	HIRA	ENST00000263208	human	ensembl	74_37	-1	known	silent	c.2715	p.S905	1.000	pfam_Hira	pfam_Hira,pfam_WD40_repeat,pfam_HIRA_B_motif,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	HIRA	HGNC	ENSG00000100084				63	0	0	20	7	25.9259
PI4KA	0	genome.wustl.edu	37	22	21101932	21101932	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	22	21101932	21101932	G	A	SNP	PI4KA	ENST00000255882	human	ensembl	74_37	-1	known	missense	c.3302	p.A1101V	1.000	NULL	pfam_PI3/4_kinase_cat_dom,pfam_PInositide-3_kin_accessory_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PI4KA	HGNC	ENSG00000241973				128	0	0	76	36	32.1429
LZTR1	0	genome.wustl.edu	37	22	21348936	21348936	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	22	21348936	21348936	T	C	SNP	LZTR1	ENST00000215739	human	ensembl	74_37	+1	known	missense	c.1705	p.Y569H	1.000	superfamily_BTB/POZ_fold,smart_BTB/POZ-like	pfam_Kelch_1,pfam_BTB_POZ,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_Kelch_1,smart_BTB/POZ-like,pfscan_BTB/POZ-like	-	no_errors	LZTR1	HGNC	ENSG00000099949				86	0	0	50	5	9.09091
HIC2	0	genome.wustl.edu	37	22	21799829	21799829	+	Silent	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	22	21799829	21799829	C	T	SNP	HIC2	ENST00000407464	human	ensembl	74_37	+1	known	silent	c.645	p.G215	0.932	NULL	pfam_BTB_POZ,pfam_Znf_C2H2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	HIC2	HGNC	ENSG00000169635				50	0	0	26	12	31.5789
HIC2	0	genome.wustl.edu	37	22	21800560	21800560	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	22	21800560	21800560	C	T	SNP	HIC2	ENST00000407464	human	ensembl	74_37	+1	known	missense	c.1376	p.A459V	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_BTB_POZ,pfam_Znf_C2H2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	HIC2	HGNC	ENSG00000169635				214	0	0	117	51	30.3571
TOP3B	0	genome.wustl.edu	37	22	22317239	22317239	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	22	22317239	22317239	A	G	SNP	TOP3B	ENST00000357179	human	ensembl	74_37	-1	known	missense	c.1231	p.Y411H	1.000	pfam_Topo_IA_cen,superfamily_Topo_IA_core_domain,smart_Topo_IA_DNA-bd,prints_Topo_IA	pfam_Topo_IA_cen,pfam_Toprim_domain,superfamily_Topo_IA_core_domain,smart_Toprim_domain,smart_Topo_IA_2,smart_Topo_IA_DNA-bd,prints_Topo_IA	-	no_errors	TOP3B	HGNC	ENSG00000100038				97	0	0	56	8	12.5
TOP3B	0	genome.wustl.edu	37	22	22318552	22318552	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	22	22318552	22318552	T	C	SNP	TOP3B	ENST00000357179	human	ensembl	74_37	-1	known	missense	c.1079	p.H360R	1.000	pfam_Topo_IA_cen,superfamily_Topo_IA_core_domain,smart_Topo_IA_DNA-bd	pfam_Topo_IA_cen,pfam_Toprim_domain,superfamily_Topo_IA_core_domain,smart_Toprim_domain,smart_Topo_IA_2,smart_Topo_IA_DNA-bd,prints_Topo_IA	-	no_errors	TOP3B	HGNC	ENSG00000100038				122	1	0.813008	57	32	35.9551
GNAZ	0	genome.wustl.edu	37	22	23437986	23437986	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	22	23437986	23437986	A	G	SNP	GNAZ	ENST00000248996	human	ensembl	74_37	+1	known	missense	c.104	p.K35R	1.000	pfam_Gprotein_alpha_su,superfamily_P-loop_NTPase,smart_Gprotein_alpha_su,prints_Gprotein_alpha_su	pfam_Gprotein_alpha_su,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,superfamily_GproteinA_insert,smart_Gprotein_alpha_su,prints_Gprotein_alpha_su,prints_Gprotein_alpha_I	-	no_errors	GNAZ	HGNC	ENSG00000128266				254	0	0	136	55	28.7958
GGT1	0	genome.wustl.edu	37	22	25024077	25024077	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	22	25024077	25024077	A	T	SNP	GGT1	ENST00000248923	human	ensembl	74_37	+1	known	missense	c.1366	p.T456S	0.013	pfam_GGT_peptidase,prints_GGT_peptidase,tigrfam_GGT_peptidase	pfam_GGT_peptidase,prints_GGT_peptidase,tigrfam_GGT_peptidase	-	no_errors	GGT1	HGNC	ENSG00000100031				107	0	0	64	25	28.0899
SGSM1	0	genome.wustl.edu	37	22	25263061	25263061	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	22	25263061	25263061	G	A	SNP	SGSM1	ENST00000400359	human	ensembl	74_37	+1	known	missense	c.928	p.V310I	1.000	NULL	pfam_Run,pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Run,smart_Rab-GTPase-TBC_dom,pfscan_Run,pfscan_Rab-GTPase-TBC_dom	-	no_errors	SGSM1	HGNC	ENSG00000167037				38	0	0	17	12	41.3793
MYO18B	0	genome.wustl.edu	37	22	26165129	26165129	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	22	26165129	26165129	T	C	SNP	MYO18B	ENST00000335473	human	ensembl	74_37	+1	known	missense	c.1246	p.C416R	0.000	NULL	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,superfamily_tRNA-bd_arm,superfamily_Ribosomal_zn-bd,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO18B	HGNC	ENSG00000133454				33	0	0	12	7	36.8421
TFIP11	0	genome.wustl.edu	37	22	26888169	26888169	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	22	26888169	26888169	T	C	SNP	TFIP11	ENST00000405938	human	ensembl	74_37	-1	known	missense	c.2324	p.D775G	1.000	NULL	pfam_GCFC_dom,pfam_TIP_N,pfam_G_patch_dom,smart_G_patch_dom,pfscan_G_patch_dom	-	no_errors	TFIP11	HGNC	ENSG00000100109				134	0	0	63	25	28.4091
CHEK2	0	genome.wustl.edu	37	22	29083889	29083889	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	22	29083889	29083889	A	G	SNP	CHEK2	ENST00000382580	human	ensembl	74_37	-1	known	missense	c.1757	p.L586S	0.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_FHA_dom,superfamily_Kinase-like_dom,superfamily_SMAD_FHA_domain,smart_FHA_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_FHA_dom,pfscan_Prot_kinase_dom	-	no_errors	CHEK2	HGNC	ENSG00000183765				78	0	0	41	19	31.6667
CHEK2	0	genome.wustl.edu	37	22	29083895	29083895	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	22	29083895	29083895	G	C	SNP	CHEK2	ENST00000382580	human	ensembl	74_37	-1	known	missense	c.1751	p.A584G	0.268	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_FHA_dom,superfamily_Kinase-like_dom,superfamily_SMAD_FHA_domain,smart_FHA_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_FHA_dom,pfscan_Prot_kinase_dom	-	no_errors	CHEK2	HGNC	ENSG00000183765				86	0	0	44	16	26.6667
CCDC117	0	genome.wustl.edu	37	22	29182081	29182081	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	22	29182081	29182081	C	T	SNP	CCDC117	ENST00000249064	human	ensembl	74_37	+1	known	missense	c.607	p.R203C	1.000	NULL	NULL	-	no_errors	CCDC117	HGNC	ENSG00000159873				170	0	0	76	22	22.449
RFPL1	0	genome.wustl.edu	37	22	29837922	29837922	+	Silent	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	22	29837922	29837922	C	T	SNP	RFPL1	ENST00000354373	human	ensembl	74_37	+1	known	silent	c.765	p.N255	0.007	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl_sf,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,prints_Butyrophylin	pfam_RDM_domain_RFPL,pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl_sf,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	RFPL1	HGNC	ENSG00000128250				123	0	0	67	32	32.3232
UQCR10	0	genome.wustl.edu	37	22	30163472	30163472	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	22	30163472	30163472	G	A	SNP	UQCR10	ENST00000330029	human	ensembl	74_37	+1	known	missense	c.85	p.V29I	0.999	pfam_QCR9,superfamily_QCR9	pfam_QCR9,superfamily_QCR9	-	no_errors	UQCR10	HGNC	ENSG00000184076				126	0	0	75	5	6.25
SEC14L3	0	genome.wustl.edu	37	22	30864625	30864625	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	22	30864625	30864625	A	G	SNP	SEC14L3	ENST00000215812	human	ensembl	74_37	-1	known	missense	c.293	p.V98A	1.000	superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom	pfam_CRAL-TRIO_dom,pfam_CRAL/TRIO_N_dom,superfamily_CRAL-TRIO_dom,superfamily_GOLD,superfamily_CRAL/TRIO_N_dom,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom,pfscan_GOLD,prints_CRAL-bd_toc_tran	-	no_errors	SEC14L3	HGNC	ENSG00000100012				214	0	0	160	14	8.04598
PLA2G3	0	genome.wustl.edu	37	22	31533758	31533758	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	22	31533758	31533758	G	T	SNP	PLA2G3	ENST00000215885	human	ensembl	74_37	-1	known	missense	c.1004	p.S335Y	0.049	NULL	pfam_PLipase_A2,superfamily_PLipase_A2_dom	-	no_errors	PLA2G3	HGNC	ENSG00000100078				424	1	0.235294	299	57	16.0112
LIMK2	0	genome.wustl.edu	37	22	31663869	31663869	+	Silent	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	22	31663869	31663869	A	G	SNP	LIMK2	ENST00000331728	human	ensembl	74_37	+1	known	silent	c.1236	p.T412	0.001	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Znf_LIM,pfam_PDZ,superfamily_Kinase-like_dom,superfamily_PDZ,smart_Znf_LIM,smart_PDZ,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Znf_LIM,pfscan_PDZ,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	LIMK2	HGNC	ENSG00000182541				151	0	0	66	22	25
PATZ1	0	genome.wustl.edu	37	22	31737606	31737606	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	22	31737606	31737606	A	G	SNP	PATZ1	ENST00000215919	human	ensembl	74_37	-1	known	missense	c.1399	p.W467R	1.000	NULL	pfam_BTB_POZ,pfam_Znf_C2H2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	PATZ1	HGNC	ENSG00000100105				138	0	0	103	16	13.4454
PRR14L	0	genome.wustl.edu	37	22	32108285	32108285	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	22	32108285	32108285	G	A	SNP	PRR14L	ENST00000397493	human	ensembl	74_37	-1	known	missense	c.5540	p.T1847I	0.987	NULL	NULL	-	no_errors	PRR14L	HGNC	ENSG00000183530				171	0	0	118	15	11.2782
PVALB	0	genome.wustl.edu	37	22	37209708	37209708	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	22	37209708	37209708	C	T	SNP	PVALB	ENST00000216200	human	ensembl	74_37	-1	known	missense	c.286	p.G96S	1.000	smart_EF_hand_dom,pfscan_EF_hand_dom	pfam_EF_hand_dom,smart_EF_hand_dom,pfscan_EF_hand_dom	-	no_errors	PVALB	HGNC	ENSG00000100362				232	0	0	133	43	24.4318
SSTR3	0	genome.wustl.edu	37	22	37603130	37603130	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	22	37603130	37603130	C	T	SNP	SSTR3	ENST00000328544	human	ensembl	74_37	-1	known	missense	c.713	p.R238H	0.550	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_7TM,prints_Somatstn_rcpt_3,prints_Somatstn_rcpt,prints_Somatstn_rcpt_5	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_7TM,prints_Somatstn_rcpt_3,prints_GPCR_Rhodpsn,prints_Somatstn_rcpt,prints_Somatstn_rcpt_5,prints_Neuropept_B/W_rcpt	-	no_errors	SSTR3	HGNC	ENSG00000183473				90	0	0	43	16	27.1186
MFNG	0	genome.wustl.edu	37	22	37881992	37881992	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	22	37881992	37881992	A	G	SNP	MFNG	ENST00000356998	human	ensembl	74_37	-1	known	missense	c.224	p.L75P	1.000	pfam_Fringe-like,pirsf_Fringe	pfam_Fringe-like,pirsf_Fringe	-	no_errors	MFNG	HGNC	ENSG00000100060				74	0	0	49	3	5.76923
SH3BP1	0	genome.wustl.edu	37	22	38051301	38051301	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	22	38051301	38051301	G	A	SNP	SH3BP1	ENST00000357436	human	ensembl	74_37	+1	known	silent	c.1716	p.R572	1.000	NULL	pfam_RhoGAP_dom,pfam_BAR_dom,superfamily_Rho_GTPase_activation_prot,smart_BAR_dom,smart_RhoGAP_dom,pfscan_BAR_dom,pfscan_RhoGAP_dom	-	no_errors	SH3BP1	HGNC	ENSG00000100092				31	0	0	20	6	23.0769
BAIAP2L2	0	genome.wustl.edu	37	22	38481311	38481311	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	22	38481311	38481311	C	T	SNP	BAIAP2L2	ENST00000381669	human	ensembl	74_37	-1	known	missense	c.1586	p.R529H	1.000	NULL	pfam_IRSp53/MIM_homology_IMD,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	BAIAP2L2	HGNC	ENSG00000128298				58	0	0	38	17	30.9091
GTPBP1	0	genome.wustl.edu	37	22	39123224	39123224	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	22	39123224	39123224	C	T	SNP	GTPBP1	ENST00000216044	human	ensembl	74_37	+1	known	missense	c.1408	p.R470C	1.000	pfam_Transl_elong_EFTu/EF1A_2,superfamily_Transl_B-barrel	pfam_EF_GTP-bd_dom,pfam_Transl_elong_EFTu/EF1A_C,pfam_Transl_elong_EFTu/EF1A_2,superfamily_P-loop_NTPase,superfamily_Transl_elong_EF1A/Init_IF2_C,superfamily_Transl_B-barrel	-	no_errors	GTPBP1	HGNC	ENSG00000100226				294	0	0	165	74	30.9623
APOBEC3D	0	genome.wustl.edu	37	22	39421135	39421135	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	22	39421135	39421135	C	T	SNP	APOBEC3D	ENST00000216099	human	ensembl	74_37	+1	known	nonsense	c.271	p.R91*	0.000	pfam_APOBEC_N,superfamily_Cytidine_deaminase-like	pfam_APOBEC_N,pfam_APOBEC_C,superfamily_Cytidine_deaminase-like	-	no_errors	APOBEC3D	HGNC	ENSG00000243811				174	0	0	85	32	27.3504
TAB1	0	genome.wustl.edu	37	22	39822886	39822886	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	22	39822886	39822886	A	G	SNP	TAB1	ENST00000216160	human	ensembl	74_37	+1	known	missense	c.1100	p.Y367C	1.000	NULL	pfam_PP2C-like_dom,superfamily_PP2C-like_dom,smart_PP2C-like_dom	-	no_errors	TAB1	HGNC	ENSG00000100324				149	0	0	87	7	7.44681
MGAT3	0	genome.wustl.edu	37	22	39883966	39883966	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	22	39883966	39883966	C	T	SNP	MGAT3	ENST00000341184	human	ensembl	74_37	+1	known	missense	c.614	p.P205L	1.000	pfam_Glyco_trans_17	pfam_Glyco_trans_17	-	no_errors	MGAT3	HGNC	ENSG00000128268				29	0	0	10	9	47.3684
TNRC6B	0	genome.wustl.edu	37	22	40718965	40718965	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	22	40718965	40718965	C	T	SNP	TNRC6B	ENST00000454349	human	ensembl	74_37	+1	known	missense	c.5222	p.A1741V	0.927	NULL	pfam_Argonaute_hook_dom,superfamily_UBA-like	-	no_errors	TNRC6B	HGNC	ENSG00000100354				52	0	0	24	16	40
MKL1	0	genome.wustl.edu	37	22	40827407	40827407	+	Splice_Site	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	22	40827407	40827407	A	G	SNP	MKL1	ENST00000355630	human	ensembl	74_37	-1	known	splice_site	c.139+2	e3+2	1.000	-	-	-	no_errors	MKL1	HGNC	ENSG00000196588				579	1	0.172414	287	111	27.8894
MCHR1	0	genome.wustl.edu	37	22	41077604	41077604	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	22	41077604	41077604	G	A	SNP	MCHR1	ENST00000249016	human	ensembl	74_37	+1	known	missense	c.941	p.R314H	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_MCH1_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_MCH1_rcpt,prints_MCH_rcpt,prints_GPCR_Rhodpsn	-	no_errors	MCHR1	HGNC	ENSG00000128285				154	0	0	97	28	22.4
EP300	0	genome.wustl.edu	37	22	41523566	41523566	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	22	41523566	41523566	C	T	SNP	EP300	ENST00000263253	human	ensembl	74_37	+1	known	missense	c.982	p.H328Y	1.000	superfamily_Znf_TAZ	pfam_Histone_H3-K56_AcTrfase_RTT109,pfam_Nuc_rcpt_coact_CREBbp,pfam_KIX_dom,pfam_DUF902_CREBbp,pfam_Znf_TAZ,pfam_Bromodomain,pfam_Znf_ZZ,superfamily_Bromodomain,superfamily_Znf_TAZ,superfamily_KIX_dom,superfamily_Nuc_rcpt_coact,superfamily_Znf_FYVE_PHD,smart_Znf_TAZ,smart_Bromodomain,smart_Znf_ZZ,pfscan_KIX_dom,pfscan_Znf_TAZ,pfscan_Znf_ZZ,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	EP300	HGNC	ENSG00000100393				286	0	0	139	75	35.0467
L3MBTL2	0	genome.wustl.edu	37	22	41621074	41621074	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	22	41621074	41621074	A	G	SNP	L3MBTL2	ENST00000216237	human	ensembl	74_37	+1	known	missense	c.1355	p.K452R	1.000	pfam_Mbt,smart_Mbt,pfscan_Mbt	pfam_Mbt,smart_Mbt,pfscan_Mbt,pfscan_Znf_FCS	-	no_errors	L3MBTL2	HGNC	ENSG00000100395				119	1	0.833333	88	6	6.38298
TCF20	0	genome.wustl.edu	37	22	42610373	42610373	+	Silent	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	22	42610373	42610373	C	T	SNP	TCF20	ENST00000359486	human	ensembl	74_37	-1	known	silent	c.939	p.Q313	1.000	NULL	smart_Znf_PHD	-	no_errors	TCF20	HGNC	ENSG00000100207				168	0	0	92	44	32.3529
SCUBE1	0	genome.wustl.edu	37	22	43634937	43634937	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	22	43634937	43634937	C	A	SNP	SCUBE1	ENST00000360835	human	ensembl	74_37	-1	known	missense	c.751	p.G251C	1.000	smart_EG-like_dom,smart_EGF-like_Ca-bd_dom	pfam_EGF-like_Ca-bd_dom,pfam_Tyr-kin_ephrin_A/B_rcpt-like,pfam_EG-like_dom,pfam_CUB_dom,superfamily_CUB_dom,superfamily_Growth_fac_rcpt_N_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_CUB_dom,pfscan_CUB_dom,pfscan_EG-like_dom	-	no_errors	SCUBE1	HGNC	ENSG00000159307				48	0	0	31	9	22.5
PARVB	0	genome.wustl.edu	37	22	44532343	44532343	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	22	44532343	44532343	C	T	SNP	PARVB	ENST00000406477	human	ensembl	74_37	+1	known	missense	c.736	p.R246W	1.000	superfamily_CH-domain	pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	-	no_errors	PARVB	HGNC	ENSG00000188677				114	0	0	60	5	7.69231
KIAA0930	0	genome.wustl.edu	37	22	45607889	45607889	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	22	45607889	45607889	A	G	SNP	KIAA0930	ENST00000251993	human	ensembl	74_37	-1	known	missense	c.179	p.V60A	1.000	pfam_DUF2045	pfam_DUF2045	-	no_errors	KIAA0930	HGNC	ENSG00000100364				146	0	0	98	10	9.25926
FAM118A	0	genome.wustl.edu	37	22	45723730	45723730	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	22	45723730	45723730	G	A	SNP	FAM118A	ENST00000216214	human	ensembl	74_37	+1	known	missense	c.308	p.G103D	0.999	NULL	superfamily_RNaseH-like_dom	-	no_errors	FAM118A	HGNC	ENSG00000100376				111	0	0	40	21	34.4262
SMC1B	0	genome.wustl.edu	37	22	45768124	45768124	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	22	45768124	45768124	T	A	SNP	SMC1B	ENST00000357450	human	ensembl	74_37	-1	known	missense	c.2107	p.T703S	0.171	pfam_RecF/RecN/SMC_N,superfamily_P-loop_NTPase	pfam_RecF/RecN/SMC_N,pfam_SMC_hinge,superfamily_P-loop_NTPase,superfamily_SMC_hinge,superfamily_t-SNARE,smart_SMC_hinge	-	no_errors	SMC1B	HGNC	ENSG00000077935				134	0	0	66	7	9.58904
PKDREJ	0	genome.wustl.edu	37	22	46658199	46658199	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	22	46658199	46658199	G	A	SNP	PKDREJ	ENST00000253255	human	ensembl	74_37	-1	known	missense	c.1021	p.L341F	0.000	pfam_PKD/REJ-like,pfscan_REJ-like	pfam_PKD1_2_channel,pfam_PKD/REJ-like,pfam_PLAT/LH2_dom,pfam_Ion_trans_dom,superfamily_Lipase_LipOase,smart_GPS_dom,smart_PLAT/LH2_dom,pfscan_PLAT/LH2_dom,pfscan_REJ-like,prints_PKD_2	-	no_errors	PKDREJ	HGNC	ENSG00000130943				279	0	0	208	12	5.45455
CELSR1	0	genome.wustl.edu	37	22	46860228	46860228	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	22	46860228	46860228	C	T	SNP	CELSR1	ENST00000262738	human	ensembl	74_37	-1	known	missense	c.3559	p.V1187I	1.000	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_DUF3497,pfam_Laminin_G,pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_EG-like_dom,pfam_EGF_laminin,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,smart_EGF_laminin,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_GPS_dom,pfscan_Laminin_G,pfscan_Cadherin,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_Cadherin,prints_GPCR_2_secretin-like	-	no_errors	CELSR1	HGNC	ENSG00000075275				144	0	0	68	31	31.3131
SBF1	0	genome.wustl.edu	37	22	50897976	50897976	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	22	50897976	50897976	G	A	SNP	SBF1	ENST00000380817	human	ensembl	74_37	-1	known	missense	c.3611	p.A1204V	0.998	pfam_Myotubularin-like_Pase_dom	pfam_SBF2,pfam_DENN_dom,pfam_uDENN_dom,pfam_Myotubularin-like_Pase_dom,pfam_dDENN_dom,pfam_GRAM,pfam_Pleckstrin_homology,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,smart_GRAM,smart_Pleckstrin_homology,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom,pfscan_Pleckstrin_homology	-	no_errors	SBF1	HGNC	ENSG00000100241				65	0	0	31	20	39.2157
SBF1	0	genome.wustl.edu	37	22	50900712	50900712	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	22	50900712	50900712	C	T	SNP	SBF1	ENST00000380817	human	ensembl	74_37	-1	known	missense	c.2318	p.S773N	1.000	NULL	pfam_SBF2,pfam_DENN_dom,pfam_uDENN_dom,pfam_Myotubularin-like_Pase_dom,pfam_dDENN_dom,pfam_GRAM,pfam_Pleckstrin_homology,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,smart_GRAM,smart_Pleckstrin_homology,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom,pfscan_Pleckstrin_homology	-	no_errors	SBF1	HGNC	ENSG00000100241				135	0	0	81	23	22.1154
SHANK3	0	genome.wustl.edu	37	22	51160716	51160716	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	22	51160716	51160716	G	A	SNP	SHANK3	ENST00000262795	human	ensembl	74_37	+1	known	silent	c.4503	p.G1501	1.000	NULL	pfam_SAM_type1,pfam_Ankyrin_rpt,pfam_SAM_2,pfam_SH3_2,pfam_PDZ,superfamily_Ankyrin_rpt-contain_dom,superfamily_PDZ,superfamily_SAM/pointed,superfamily_SH3_domain,smart_Ankyrin_rpt,smart_SH3_domain,smart_PDZ,smart_SAM,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_PDZ,pfscan_SAM,pfscan_SH3_domain	-	no_errors	SHANK3	HGNC	ENSG00000251322				85	0	0	76	6	7.31707
CEP97	0	genome.wustl.edu	37	3	101451384	101451384	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	3	101451384	101451384	A	G	SNP	CEP97	ENST00000327230	human	ensembl	74_37	+1	known	missense	c.614	p.N205S	1.000	NULL	pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,pfscan_IQ_motif_EF-hand-BS	-	no_errors	CEP97	HGNC	ENSG00000182504				110	0	0	54	23	29.8701
IRAK2	0	genome.wustl.edu	37	3	10242142	10242142	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	3	10242142	10242142	G	A	SNP	IRAK2	ENST00000256458	human	ensembl	74_37	+1	known	missense	c.367	p.A123T	0.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Death_domain,superfamily_Kinase-like_dom,superfamily_DEATH-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	IRAK2	HGNC	ENSG00000134070				332	0	0	159	52	24.6445
MORC1	0	genome.wustl.edu	37	3	108688562	108688562	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	3	108688562	108688562	T	C	SNP	MORC1	ENST00000232603	human	ensembl	74_37	-1	known	missense	c.2558	p.Q853R	0.553	NULL	pfam_Znf_CW,superfamily_HATPase_ATP-bd,pfscan_Znf_CW	-	no_errors	MORC1	HGNC	ENSG00000114487				192	0	0	89	32	26.4463
SLC6A11	0	genome.wustl.edu	37	3	10976880	10976880	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	3	10976880	10976880	C	T	SNP	SLC6A11	ENST00000254488	human	ensembl	74_37	+1	known	missense	c.1741	p.P581S	0.263	NULL	pfam_Na/ntran_symport,superfamily_S-AdoMet_deCO2ase_core,pfscan_Na/ntran_symport,prints_Na/ntran_symport,prints_Na/ntran_symport_GABA_GAT3	-	no_errors	SLC6A11	HGNC	ENSG00000132164				248	0	0	151	12	7.36196
SPICE1	0	genome.wustl.edu	37	3	113176104	113176104	+	Silent	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	3	113176104	113176104	C	T	SNP	SPICE1	ENST00000295872	human	ensembl	74_37	-1	known	silent	c.1536	p.V512	1.000	NULL	NULL	-	no_errors	SPICE1	HGNC	ENSG00000163611				174	0	0	86	51	37.2263
UPK1B	0	genome.wustl.edu	37	3	118906708	118906708	+	Silent	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	3	118906708	118906708	C	T	SNP	UPK1B	ENST00000264234	human	ensembl	74_37	+1	known	silent	c.156	p.N52	0.335	pfam_Tetraspanin/Peripherin	pfam_Tetraspanin/Peripherin,superfamily_Tetraspanin_EC2,prints_Tetraspanin	-	no_errors	UPK1B	HGNC	ENSG00000114638				312	0	0	132	61	31.6062
POLQ	0	genome.wustl.edu	37	3	121158854	121158854	+	Silent	SNP	A	A	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	3	121158854	121158854	A	C	SNP	POLQ	ENST00000264233	human	ensembl	74_37	-1	known	silent	c.7374	p.P2458	0.991	pfam_DNA-dir_DNA_pol_A_palm_dom,smart_DNA-dir_DNA_pol_A_palm_dom	pfam_DNA-dir_DNA_pol_A_palm_dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,superfamily_RNaseH-like_dom,smart_Helicase_ATP-bd,smart_Helicase_C,smart_DNA-dir_DNA_pol_A_palm_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,prints_DNA_polymerase_A	-	no_errors	POLQ	HGNC	ENSG00000051341				133	0	0	61	40	39.604
POLQ	0	genome.wustl.edu	37	3	121229067	121229067	+	Silent	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	3	121229067	121229067	A	G	SNP	POLQ	ENST00000264233	human	ensembl	74_37	-1	known	silent	c.1635	p.S545	1.000	pfscan_Helicase_C	pfam_DNA-dir_DNA_pol_A_palm_dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,superfamily_RNaseH-like_dom,smart_Helicase_ATP-bd,smart_Helicase_C,smart_DNA-dir_DNA_pol_A_palm_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,prints_DNA_polymerase_A	-	no_errors	POLQ	HGNC	ENSG00000051341				153	1	0.649351	72	38	34.5455
GOLGB1	0	genome.wustl.edu	37	3	121412910	121412910	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	3	121412910	121412910	G	A	SNP	GOLGB1	ENST00000340645	human	ensembl	74_37	-1	known	missense	c.6445	p.R2149C	0.166	NULL	superfamily_Prefoldin,superfamily_STAT_TF_coiled-coil,smart_Leu_zip_homeo	-	no_errors	GOLGB1	HGNC	ENSG00000173230				541	0	0	265	110	29.3333
PARP14	0	genome.wustl.edu	37	3	122419228	122419228	+	Silent	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	3	122419228	122419228	T	C	SNP	PARP14	ENST00000474629	human	ensembl	74_37	+1	known	silent	c.1827	p.L609	0.000	NULL	pfam_Macro_dom,pfam_Poly(ADP-ribose)pol_cat_dom,pfam_WWE-dom,smart_Macro_dom,pfscan_Macro_dom,pfscan_WWE-dom,pfscan_Poly(ADP-ribose)pol_cat_dom	-	no_errors	PARP14	HGNC	ENSG00000173193				45	0	0	23	22	48.8889
ADCY5	0	genome.wustl.edu	37	3	123167070	123167070	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	3	123167070	123167070	C	T	SNP	ADCY5	ENST00000462833	human	ensembl	74_37	-1	known	missense	c.323	p.G108D	0.548	NULL	pfam_A/G_cyclase,pfam_Adenylate_cyclase-like,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY5	HGNC	ENSG00000173175				8	0	0	1	3	75
KALRN	0	genome.wustl.edu	37	3	124174097	124174097	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	3	124174097	124174097	C	T	SNP	KALRN	ENST00000360013	human	ensembl	74_37	+1	known	missense	c.3620	p.T1207M	1.000	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pfam_DH-domain,pfam_Prot_kinase_dom,pfam_Spectrin_repeat,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_Fibronectin_type3,superfamily_SH3_domain,superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,smart_Spectrin/alpha-actinin,smart_DH-domain,smart_Pleckstrin_homology,smart_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_CRAL-TRIO_dom,pfscan_Fibronectin_type3,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,pfscan_DH-domain	-	no_errors	KALRN	HGNC	ENSG00000160145				169	0	0	94	36	27.6923
HEG1	0	genome.wustl.edu	37	3	124728615	124728615	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	3	124728615	124728615	T	C	SNP	HEG1	ENST00000311127	human	ensembl	74_37	-1	known	missense	c.3127	p.T1043A	1.000	pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom	pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom	-	no_errors	HEG1	HGNC	ENSG00000173706				74	0	0	50	3	5.66038
PLXNA1	0	genome.wustl.edu	37	3	126724974	126724974	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	3	126724974	126724974	G	A	SNP	PLXNA1	ENST00000393409	human	ensembl	74_37	+1	known	silent	c.1950	p.K650	1.000	NULL	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_Semap_dom,pfam_IPT,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_IPT,pfscan_Semap_dom	-	no_errors	PLXNA1	HGNC	ENSG00000114554				122	0	0	62	29	31.8681
PLXNA1	0	genome.wustl.edu	37	3	126731000	126731000	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	3	126731000	126731000	C	T	SNP	PLXNA1	ENST00000393409	human	ensembl	74_37	+1	known	missense	c.2312	p.S771L	1.000	NULL	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_Semap_dom,pfam_IPT,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_IPT,pfscan_Semap_dom	-	no_errors	PLXNA1	HGNC	ENSG00000114554				42	0	0	31	11	26.1905
PLXNA1	0	genome.wustl.edu	37	3	126748300	126748300	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	3	126748300	126748300	G	A	SNP	PLXNA1	ENST00000393409	human	ensembl	74_37	+1	known	silent	c.4791	p.S1597	0.145	pfam_Plexin_cytoplasmic_RasGAP_dom,superfamily_Rho_GTPase_activation_prot	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_Semap_dom,pfam_IPT,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_IPT,pfscan_Semap_dom	-	no_errors	PLXNA1	HGNC	ENSG00000114554				297	0	0	127	58	31.3514
MCM2	0	genome.wustl.edu	37	3	127338063	127338063	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	3	127338063	127338063	A	G	SNP	MCM2	ENST00000265056	human	ensembl	74_37	+1	known	missense	c.2207	p.N736S	1.000	pfam_MCM_DNA-dep_ATPase,superfamily_P-loop_NTPase,smart_MCM_DNA-dep_ATPase	pfam_MCM_DNA-dep_ATPase,pfam_MCM2,pfam_Mg_chelatse_chII,pfam_ATPase_AAA-3,pfam_ATPase_dyneun-rel_AAA,superfamily_NA-bd_OB-fold,superfamily_P-loop_NTPase,smart_MCM_DNA-dep_ATPase,pfscan_MCM_DNA-dep_ATPase,prints_MCM2,prints_MCM_DNA-dep_ATPase	-	no_errors	MCM2	HGNC	ENSG00000073111				161	0	0	105	29	21.6418
C3orf27	0	genome.wustl.edu	37	3	128292138	128292138	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	3	128292138	128292138	G	A	SNP	C3orf27	ENST00000356020	human	ensembl	74_37	-1	known	silent	c.435	p.F145	0.000	NULL	NULL	-	no_errors	C3orf27	HGNC	ENSG00000198685				94	0	0	48	7	12.7273
ACAD9	0	genome.wustl.edu	37	3	128598515	128598515	+	RNA	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	3	128598515	128598515	G	A	SNP	ACAD9	ENST00000505602	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ACAD9	HGNC	ENSG00000177646				420	0	0	268	15	5.30035
IFT122	0	genome.wustl.edu	37	3	129197018	129197018	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	3	129197018	129197018	G	A	SNP	IFT122	ENST00000296266	human	ensembl	74_37	+1	known	missense	c.1460	p.C487Y	1.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	IFT122	HGNC	ENSG00000163913				81	0	0	37	12	24.4898
RHO	0	genome.wustl.edu	37	3	129252455	129252455	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	3	129252455	129252455	G	A	SNP	RHO	ENST00000296271	human	ensembl	74_37	+1	known	missense	c.941	p.R314Q	1.000	pfam_7TM_GPCR_serpentine_rcpt_Srv,pfam_7TM_GPCR_serpentine_rcpt_Srw,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_Rhodopsin_N,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfam_7TM_GPCR_serpentine_rcpt_Srw,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_Rhodopsin,prints_GPCR_Rhodpsn,prints_Opsin	-	no_errors	RHO	HGNC	ENSG00000163914				298	0	0	143	61	29.902
TMCC1	0	genome.wustl.edu	37	3	129389611	129389611	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	3	129389611	129389611	G	A	SNP	TMCC1	ENST00000393238	human	ensembl	74_37	-1	known	missense	c.1073	p.T358I	1.000	pfam_Predicted_TM_coiled-coil_2	pfam_Predicted_TM_coiled-coil_2	-	no_errors	TMCC1	HGNC	ENSG00000172765				163	0	0	82	39	32.2314
TRH	0	genome.wustl.edu	37	3	129695892	129695892	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	3	129695892	129695892	C	T	SNP	TRH	ENST00000302649	human	ensembl	74_37	+1	known	missense	c.562	p.P188S	0.998	pfam_TRH,pirsf_TRH	pfam_TRH,pirsf_TRH	-	no_errors	TRH	HGNC	ENSG00000170893				130	0	0	46	28	37.8378
PIK3R4	0	genome.wustl.edu	37	3	130463621	130463621	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	3	130463621	130463621	C	T	SNP	PIK3R4	ENST00000356763	human	ensembl	74_37	-1	known	missense	c.442	p.D148N	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_WD40_repeat,pfam_HEAT,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_WD40_repeat,pfscan_HEAT_type_2,pfscan_Prot_kinase_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	PIK3R4	HGNC	ENSG00000196455				170	0	0	114	22	16.1765
ATP2C1	0	genome.wustl.edu	37	3	130694309	130694309	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	3	130694309	130694309	G	A	SNP	ATP2C1	ENST00000393221	human	ensembl	74_37	+1	known	missense	c.1649	p.R550H	0.013	pfam_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,superfamily_HAD-like_dom,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Ca-transp_PMR1	pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_cation-transptr_C,pfam_HAD-like_dom,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_P-typ_cyto_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Ca-transp_PMR1,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP2C1	HGNC	ENSG00000017260				81	0	0	37	16	30.1887
ASTE1	0	genome.wustl.edu	37	3	130735120	130735120	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	3	130735120	130735120	G	A	SNP	ASTE1	ENST00000264992	human	ensembl	74_37	-1	known	missense	c.1577	p.A526V	0.096	NULL	pfam_XPG_DNA_repair_N	-	no_errors	ASTE1	HGNC	ENSG00000034533				249	0	0	113	47	29.375
CPNE4	0	genome.wustl.edu	37	3	131404727	131404727	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	3	131404727	131404727	G	A	SNP	CPNE4	ENST00000502818	human	ensembl	74_37	-1	known	nonsense	c.637	p.R213*	1.000	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	pfam_Copine,pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,smart_VWF_A,pfscan_C2_dom	-	no_errors	CPNE4	HGNC	ENSG00000196353				91	0	0	32	19	37.2549
DNAJC13	0	genome.wustl.edu	37	3	132199275	132199275	+	Silent	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	3	132199275	132199275	T	C	SNP	DNAJC13	ENST00000260818	human	ensembl	74_37	+1	known	silent	c.2835	p.L945	0.745	superfamily_ARM-type_fold	pfam_DnaJ_domain,superfamily_ARM-type_fold,superfamily_GYF,smart_DnaJ_domain,pfscan_DnaJ_domain	-	no_errors	DNAJC13	HGNC	ENSG00000138246				101	0	0	66	8	10.8108
TF	0	genome.wustl.edu	37	3	133467393	133467393	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	3	133467393	133467393	A	G	SNP	TF	ENST00000402696	human	ensembl	74_37	+1	known	missense	c.181	p.K61E	0.939	pfam_Transferrin_fam,smart_Transferrin_fam,pirsf_Transferrin,prints_Transferrin_fam	pfam_Transferrin_fam,smart_Transferrin_fam,pirsf_Transferrin,prints_Transferrin_fam	-	no_errors	TF	HGNC	ENSG00000091513				79	0	0	52	20	27.7778
NUP210	0	genome.wustl.edu	37	3	13372083	13372083	+	Silent	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	3	13372083	13372083	A	G	SNP	NUP210	ENST00000254508	human	ensembl	74_37	-1	known	silent	c.3987	p.V1329	0.033	NULL	pfam_Big_2,superfamily_Invasin/intimin_cell_adhesion,superfamily_Cadherin-like,smart_Big_2	-	no_errors	NUP210	HGNC	ENSG00000132182				222	0	0	116	51	30.5389
NUP210	0	genome.wustl.edu	37	3	13381417	13381417	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	3	13381417	13381417	G	A	SNP	NUP210	ENST00000254508	human	ensembl	74_37	-1	known	silent	c.3408	p.G1136	0.796	pfam_Big_2,superfamily_Invasin/intimin_cell_adhesion,smart_Big_2	pfam_Big_2,superfamily_Invasin/intimin_cell_adhesion,superfamily_Cadherin-like,smart_Big_2	-	no_errors	NUP210	HGNC	ENSG00000132182				309	0	0	258	21	7.52688
CLDN18	0	genome.wustl.edu	37	3	137729134	137729134	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	3	137729134	137729134	G	A	SNP	CLDN18	ENST00000183605	human	ensembl	74_37	+1	known	missense	c.67	p.A23T	0.040	pfam_PMP22/EMP/MP20/Claudin,prints_Claudin18	pfam_PMP22/EMP/MP20/Claudin,prints_Claudin18,prints_Claudin	-	no_errors	CLDN18	HGNC	ENSG00000066405				59	0	0	26	13	33.3333
WNT7A	0	genome.wustl.edu	37	3	13860879	13860879	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	3	13860879	13860879	G	A	SNP	WNT7A	ENST00000285018	human	ensembl	74_37	-1	known	silent	c.612	p.G204	0.040	pfam_Wnt,smart_Wnt,prints_Wnt	pfam_Wnt,smart_Wnt,prints_Wnt,prints_Wnt7	-	no_errors	WNT7A	HGNC	ENSG00000154764				215	0	0	110	62	36.0465
COPB2	0	genome.wustl.edu	37	3	139094430	139094430	+	Silent	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	3	139094430	139094430	T	C	SNP	COPB2	ENST00000333188	human	ensembl	74_37	-1	known	silent	c.531	p.P177	1.000	pirsf_COPB2,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pirsf_COPB2,pfam_Coatomer_WD-assoc_reg,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,prints_G-protein_beta_WD-40_rep,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	COPB2	HGNC	ENSG00000184432				63	0	0	39	6	13.3333
CLSTN2	0	genome.wustl.edu	37	3	140281687	140281687	+	Silent	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	3	140281687	140281687	A	G	SNP	CLSTN2	ENST00000458420	human	ensembl	74_37	+1	known	silent	c.2247	p.L749	0.282	NULL	pfam_Cadherin,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CLSTN2	HGNC	ENSG00000158258				134	0	0	78	9	10.3448
SPSB4	0	genome.wustl.edu	37	3	140785515	140785515	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	3	140785515	140785515	T	C	SNP	SPSB4	ENST00000310546	human	ensembl	74_37	+1	known	missense	c.569	p.F190S	1.000	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl_sf,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY	pfam_SPRY_rcpt,pfam_SOCS_C,superfamily_ConA-like_lec_gl_sf,smart_SPla/RYanodine_receptor_subgr,smart_SOCS_C,pfscan_B30.2/SPRY,pfscan_SOCS_C	-	no_errors	SPSB4	HGNC	ENSG00000175093				56	0	0	36	3	7.69231
XRN1	0	genome.wustl.edu	37	3	142102233	142102233	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	3	142102233	142102233	C	T	SNP	XRN1	ENST00000264951	human	ensembl	74_37	-1	known	missense	c.2525	p.R842H	1.000	pirsf_5_3_exoribonuclease_1	pfam_Put_53exo,pirsf_5_3_exoribonuclease_1	-	no_errors	XRN1	HGNC	ENSG00000114127				119	0	0	71	36	33.6449
PCOLCE2	0	genome.wustl.edu	37	3	142567212	142567212	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	3	142567212	142567212	T	C	SNP	PCOLCE2	ENST00000295992	human	ensembl	74_37	-1	known	missense	c.295	p.N99D	0.789	pfam_CUB_dom,superfamily_CUB_dom,smart_CUB_dom,pfscan_CUB_dom	pfam_CUB_dom,pfam_Netrin_module_non-TIMP,superfamily_CUB_dom,superfamily_TIMP-like_OB-fold,smart_CUB_dom,smart_Netrin_module_non-TIMP,pfscan_CUB_dom,pfscan_Netrin_domain	-	no_errors	PCOLCE2	HGNC	ENSG00000163710				185	0	0	107	6	5.30973
PAQR9	0	genome.wustl.edu	37	3	142681070	142681070	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	3	142681070	142681070	C	T	SNP	PAQR9	ENST00000340634	human	ensembl	74_37	-1	known	missense	c.1109	p.S370N	0.000	NULL	pfam_HlyIII-related	-	no_errors	PAQR9	HGNC	ENSG00000188582				305	0	0	218	15	6.43777
PAQR9	0	genome.wustl.edu	37	3	142681213	142681213	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	3	142681213	142681213	G	A	SNP	PAQR9	ENST00000340634	human	ensembl	74_37	-1	known	silent	c.966	p.I322	1.000	NULL	pfam_HlyIII-related	-	no_errors	PAQR9	HGNC	ENSG00000188582				217	0	0	98	51	34.2282
SLC6A6	0	genome.wustl.edu	37	3	14487330	14487330	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	3	14487330	14487330	G	A	SNP	SLC6A6	ENST00000360861	human	ensembl	74_37	+1	known	missense	c.335	p.C112Y	1.000	pfam_Na/ntran_symport,pfscan_Na/ntran_symport	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport,prints_Na/ntran_symport_taurine	-	no_errors	SLC6A6	HGNC	ENSG00000131389				161	0	0	80	41	33.8843
PLSCR5	0	genome.wustl.edu	37	3	146322995	146322995	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	3	146322995	146322995	G	T	SNP	PLSCR5	ENST00000443512	human	ensembl	74_37	-1	known	missense	c.5	p.A2D	1.000	NULL	pfam_Scramblase,superfamily_Tubby_C-like	-	no_errors	PLSCR5	HGNC	ENSG00000231213				60	0	0	29	9	23.6842
ZIC1	0	genome.wustl.edu	37	3	147128402	147128402	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	3	147128402	147128402	C	T	SNP	ZIC1	ENST00000282928	human	ensembl	74_37	+1	known	missense	c.503	p.S168L	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZIC1	HGNC	ENSG00000152977				60	0	0	17	16	48.4848
HPS3	0	genome.wustl.edu	37	3	148880506	148880506	+	Silent	SNP	T	T	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	3	148880506	148880506	T	A	SNP	HPS3	ENST00000296051	human	ensembl	74_37	+1	known	silent	c.2322	p.I774	0.229	pirsf_HPS3	pirsf_HPS3	-	no_errors	HPS3	HGNC	ENSG00000163755				257	0	0	152	13	7.87879
IGSF10	0	genome.wustl.edu	37	3	151161483	151161483	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	3	151161483	151161483	C	T	SNP	IGSF10	ENST00000282466	human	ensembl	74_37	-1	known	missense	c.5252	p.R1751H	0.001	pfam_Ig_I-set,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	-	no_errors	IGSF10	HGNC	ENSG00000152580				136	0	0	58	19	24.6753
ZFYVE20	0	genome.wustl.edu	37	3	15124104	15124104	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	3	15124104	15124104	T	C	SNP	ZFYVE20	ENST00000253699	human	ensembl	74_37	-1	known	missense	c.610	p.S204G	1.000	pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,smart_Znf_FYVE,pfscan_Znf_FYVE-rel	pfam_Rbsn,pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,smart_Znf_FYVE,pfscan_Znf_FYVE-rel,pfscan_Znf_C2H2	-	no_errors	ZFYVE20	HGNC	ENSG00000131381				45	0	0	21	12	36.3636
DHX36	0	genome.wustl.edu	37	3	154002694	154002694	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	3	154002694	154002694	A	G	SNP	DHX36	ENST00000496811	human	ensembl	74_37	-1	known	missense	c.2114	p.M705T	1.000	pfam_Helicase-assoc_dom,superfamily_P-loop_NTPase,smart_Helicase-assoc_dom	pfam_Helicase-assoc_dom,pfam_DUF1605,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DHX36	HGNC	ENSG00000174953				202	0	0	87	38	30.4
PLCH1	0	genome.wustl.edu	37	3	155199765	155199765	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	3	155199765	155199765	G	A	SNP	PLCH1	ENST00000340059	human	ensembl	74_37	-1	known	silent	c.4074	p.S1358	0.652	NULL	pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,pfam_C2_dom,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_dom,smart_Pleckstrin_homology,smart_EF_hand_dom,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_dom,pfscan_EF_hand_dom,pfscan_C2_dom,pfscan_Pleckstrin_homology,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y,prints_Pinositol_PLipase_C	-	no_errors	PLCH1	HGNC	ENSG00000114805				124	0	0	75	8	9.63855
PLCH1	0	genome.wustl.edu	37	3	155200765	155200765	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	3	155200765	155200765	A	G	SNP	PLCH1	ENST00000340059	human	ensembl	74_37	-1	known	missense	c.3074	p.L1025S	0.005	NULL	pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,pfam_C2_dom,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_dom,smart_Pleckstrin_homology,smart_EF_hand_dom,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_dom,pfscan_EF_hand_dom,pfscan_C2_dom,pfscan_Pleckstrin_homology,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y,prints_Pinositol_PLipase_C	-	no_errors	PLCH1	HGNC	ENSG00000114805				198	0	0	123	13	9.55882
SLC33A1	0	genome.wustl.edu	37	3	155571075	155571075	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	3	155571075	155571075	C	T	SNP	SLC33A1	ENST00000359479	human	ensembl	74_37	-1	known	missense	c.712	p.A238T	0.977	superfamily_MFS_dom_general_subst_transpt,tigrfam_AmpG_permease/AT-1	superfamily_MFS_dom_general_subst_transpt,tigrfam_AmpG_permease/AT-1	-	no_errors	SLC33A1	HGNC	ENSG00000169359				98	0	0	47	4	7.84314
CCNL1	0	genome.wustl.edu	37	3	156867305	156867305	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	3	156867305	156867305	T	C	SNP	CCNL1	ENST00000295926	human	ensembl	74_37	-1	known	missense	c.1102	p.R368G	0.828	pirsf_Cyclin_L	pfam_Cyclin_N,superfamily_Cyclin-like,smart_Cyclin-like,pirsf_Cyclin_L	-	no_errors	CCNL1	HGNC	ENSG00000163660				150	1	0.662252	82	38	31.6667
ANKRD28	0	genome.wustl.edu	37	3	15717590	15717590	+	RNA	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	3	15717590	15717590	G	A	SNP	ANKRD28	ENST00000498713	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.006	-	-	-	no_errors	ANKRD28	HGNC	ENSG00000206560				24	0	0	13	4	23.5294
RFTN1	0	genome.wustl.edu	37	3	16399539	16399539	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	3	16399539	16399539	A	G	SNP	RFTN1	ENST00000334133	human	ensembl	74_37	-1	known	missense	c.1046	p.L349S	0.638	NULL	NULL	-	no_errors	RFTN1	HGNC	ENSG00000131378				191	0	0	89	39	30.4688
SI	0	genome.wustl.edu	37	3	164727162	164727162	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	3	164727162	164727162	A	C	SNP	SI	ENST00000264382	human	ensembl	74_37	-1	known	missense	c.4084	p.F1362V	1.000	pfam_Glyco_hydro_31,superfamily_Glycoside_hydrolase_SF	pfam_Glyco_hydro_31,pfam_P_trefoil,superfamily_Glycoside_hydrolase_SF,superfamily_Gal_mutarotase_SF_dom,smart_P_trefoil	-	no_errors	SI	HGNC	ENSG00000090402				112	0	0	49	22	30.9859
LRRIQ4	0	genome.wustl.edu	37	3	169546691	169546691	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	3	169546691	169546691	T	C	SNP	LRRIQ4	ENST00000340806	human	ensembl	74_37	+1	known	missense	c.1165	p.Y389H	0.000	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,pfscan_IQ_motif_EF-hand-BS	-	no_errors	LRRIQ4	HGNC	ENSG00000188306				179	0	0	84	39	31.7073
PLD1	0	genome.wustl.edu	37	3	171338199	171338199	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	3	171338199	171338199	G	A	SNP	PLD1	ENST00000351298	human	ensembl	74_37	-1	known	missense	c.2705	p.A902V	1.000	smart_PLipase_D/transphosphatidylase,pirsf_PLipase_D_euk,pfscan_PLipase_D/transphosphatidylase	pfam_Phox,pfam_PLipase_D/transphosphatidylase,pfam_Pleckstrin_homology,superfamily_Phox,smart_Phox,smart_Pleckstrin_homology,smart_PLipase_D/transphosphatidylase,pirsf_PLipase_D_euk,pfscan_Phox,pfscan_PLipase_D/transphosphatidylase	-	no_errors	PLD1	HGNC	ENSG00000075651				135	0	0	67	26	27.957
PLD1	0	genome.wustl.edu	37	3	171392379	171392379	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	3	171392379	171392379	G	T	SNP	PLD1	ENST00000351298	human	ensembl	74_37	-1	known	missense	c.2140	p.L714I	1.000	pirsf_PLipase_D_euk	pfam_Phox,pfam_PLipase_D/transphosphatidylase,pfam_Pleckstrin_homology,superfamily_Phox,smart_Phox,smart_Pleckstrin_homology,smart_PLipase_D/transphosphatidylase,pirsf_PLipase_D_euk,pfscan_Phox,pfscan_PLipase_D/transphosphatidylase	-	no_errors	PLD1	HGNC	ENSG00000075651				193	0	0	112	14	11.1111
FNDC3B	0	genome.wustl.edu	37	3	171965350	171965350	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	3	171965350	171965350	C	T	SNP	FNDC3B	ENST00000336824	human	ensembl	74_37	+1	known	missense	c.292	p.R98W	1.000	NULL	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	FNDC3B	HGNC	ENSG00000075420				351	1	0.284091	168	84	33.3333
FNDC3B	0	genome.wustl.edu	37	3	172003767	172003767	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	3	172003767	172003767	A	G	SNP	FNDC3B	ENST00000336824	human	ensembl	74_37	+1	known	missense	c.842	p.K281R	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	FNDC3B	HGNC	ENSG00000075420				163	0	0	86	32	27.1186
NLGN1	0	genome.wustl.edu	37	3	173996754	173996754	+	Silent	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	3	173996754	173996754	T	C	SNP	NLGN1	ENST00000401917	human	ensembl	74_37	+1	known	silent	c.1083	p.G361	0.948	pfam_CarbesteraseB	pfam_CarbesteraseB,pfam_AB_hydrolase_3,prints_Neuroligin	-	no_errors	NLGN1	HGNC	ENSG00000169760				290	0	0	130	61	31.9372
NLGN1	0	genome.wustl.edu	37	3	173998565	173998565	+	Silent	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	3	173998565	173998565	A	G	SNP	NLGN1	ENST00000401917	human	ensembl	74_37	+1	known	silent	c.2064	p.S688	1.000	NULL	pfam_CarbesteraseB,pfam_AB_hydrolase_3,prints_Neuroligin	-	no_errors	NLGN1	HGNC	ENSG00000169760				221	0	0	123	10	7.5188
NAALADL2	0	genome.wustl.edu	37	3	174951986	174951986	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	3	174951986	174951986	A	G	SNP	NAALADL2	ENST00000454872	human	ensembl	74_37	+1	known	missense	c.811	p.T271A	1.000	NULL	superfamily_TFR-like_dimer_dom	-	no_errors	NAALADL2	HGNC	ENSG00000177694				105	0	0	57	7	10.9375
NAALADL2	0	genome.wustl.edu	37	3	174974236	174974236	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	3	174974236	174974236	G	A	SNP	NAALADL2	ENST00000454872	human	ensembl	74_37	+1	known	missense	c.856	p.D286N	0.998	NULL	superfamily_TFR-like_dimer_dom	-	no_errors	NAALADL2	HGNC	ENSG00000177694				70	0	0	49	9	15.5172
NAALADL2	0	genome.wustl.edu	37	3	175042056	175042056	+	Silent	SNP	C	C	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	3	175042056	175042056	C	A	SNP	NAALADL2	ENST00000454872	human	ensembl	74_37	+1	known	silent	c.1032	p.T344	0.334	NULL	superfamily_TFR-like_dimer_dom	-	no_errors	NAALADL2	HGNC	ENSG00000177694				311	0	0	222	22	9.01639
PIK3CA	0	genome.wustl.edu	37	3	178917659	178917659	+	Silent	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	3	178917659	178917659	A	G	SNP	PIK3CA	ENST00000263967	human	ensembl	74_37	+1	known	silent	c.534	p.P178	1.000	pfam_PI3K_Ras-bd_dom,smart_PI3K_Ras-bd_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_dom,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879				154	0	0	97	14	12.6126
PIK3CA	0	genome.wustl.edu	37	3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	3	178952085	178952085	A	G	SNP	PIK3CA	ENST00000263967	human	ensembl	74_37	+1	known	missense	c.3140	p.H1047R	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_dom,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879				131	1	0.757576	78	25	24.2718
DNAJC19	0	genome.wustl.edu	37	3	180703754	180703754	+	Silent	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	3	180703754	180703754	A	G	SNP	DNAJC19	ENST00000382564	human	ensembl	74_37	-1	known	silent	c.240	p.D80	1.000	pfam_DnaJ_domain,superfamily_DnaJ_domain,smart_DnaJ_domain,pfscan_DnaJ_domain	pfam_DnaJ_domain,superfamily_DnaJ_domain,smart_DnaJ_domain,pfscan_DnaJ_domain	-	no_errors	DNAJC19	HGNC	ENSG00000205981				97	0	0	73	4	5.19481
KLHL6	0	genome.wustl.edu	37	3	183209880	183209880	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	3	183209880	183209880	G	A	SNP	KLHL6	ENST00000341319	human	ensembl	74_37	-1	known	silent	c.1701	p.D567	1.000	pfam_Kelch_1,smart_Kelch_1,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BACK,pfam_BTB_POZ,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL6	HGNC	ENSG00000172578				185	0	0	89	33	27.0492
YEATS2	0	genome.wustl.edu	37	3	183521069	183521069	+	Silent	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	3	183521069	183521069	A	G	SNP	YEATS2	ENST00000305135	human	ensembl	74_37	+1	known	silent	c.3528	p.A1176	0.037	NULL	pfam_YEATS,pfscan_YEATS	-	no_errors	YEATS2	HGNC	ENSG00000163872				36	0	0	25	6	19.3548
ABCC5	0	genome.wustl.edu	37	3	183699621	183699621	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	3	183699621	183699621	G	A	SNP	ABCC5	ENST00000334444	human	ensembl	74_37	-1	known	silent	c.1041	p.C347	1.000	pfam_ABC_transptr_TM_dom,superfamily_ABC1_TM_dom,pfscan_ABC1_TM_dom	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC1_TM_dom,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom	-	no_errors	ABCC5	HGNC	ENSG00000114770				92	0	0	33	32	49.2308
DVL3	0	genome.wustl.edu	37	3	183881465	183881465	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	3	183881465	183881465	C	T	SNP	DVL3	ENST00000313143	human	ensembl	74_37	+1	known	missense	c.182	p.S61L	1.000	pfam_DIX,smart_DIX,pfscan_DIX	pfam_Dishevelled_C-dom,pfam_DIX,pfam_Dishevelled_protein_dom,pfam_PDZ,pfam_DEP_dom,superfamily_PDZ,smart_DIX,smart_PDZ,smart_DEP_dom,pfscan_DEP_dom,pfscan_DIX,pfscan_PDZ,prints_Dishevelled_fam,prints_Dishevelled_3	-	no_errors	DVL3	HGNC	ENSG00000161202				231	1	0.431034	101	47	31.7568
PSMD2	0	genome.wustl.edu	37	3	184019395	184019395	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	3	184019395	184019395	G	A	SNP	PSMD2	ENST00000310118	human	ensembl	74_37	+1	known	missense	c.428	p.R143Q	1.000	superfamily_ARM-type_fold,pirsf_26S_Psome_Rpn1	pfam_Proteasome/cyclosome_rpt,superfamily_ARM-type_fold,pirsf_26S_Psome_Rpn1	-	no_errors	PSMD2	HGNC	ENSG00000175166				243	1	0.409836	124	59	32.2404
PSMD2	0	genome.wustl.edu	37	3	184019718	184019718	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	3	184019718	184019718	T	C	SNP	PSMD2	ENST00000310118	human	ensembl	74_37	+1	known	missense	c.563	p.V188A	1.000	superfamily_ARM-type_fold,pirsf_26S_Psome_Rpn1	pfam_Proteasome/cyclosome_rpt,superfamily_ARM-type_fold,pirsf_26S_Psome_Rpn1	-	no_errors	PSMD2	HGNC	ENSG00000175166				225	0	0	87	44	33.5878
TMEM41A	0	genome.wustl.edu	37	3	185214708	185214708	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	3	185214708	185214708	A	G	SNP	TMEM41A	ENST00000421852	human	ensembl	74_37	-1	known	missense	c.181	p.Y61H	1.000	NULL	pfam_SNARE_assoc	-	no_errors	TMEM41A	HGNC	ENSG00000163900				22	0	0	9	3	25
C3orf65	0	genome.wustl.edu	37	3	185434524	185434524	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	3	185434524	185434524	G	A	SNP	C3orf65	ENST00000296270	human	ensembl	74_37	+1	known	nonsense	c.357	p.W119*	0.024	NULL	NULL	-	no_errors	C3orf65	HGNC	ENSG00000163915				107	0	0	51	34	40
TRA2B	0	genome.wustl.edu	37	3	185655750	185655750	+	RNA	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	3	185655750	185655750	G	A	SNP	TRA2B	ENST00000465245	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	TRA2B	HGNC	ENSG00000136527				19	0	0	8	4	33.3333
DGKG	0	genome.wustl.edu	37	3	185867951	185867951	+	Silent	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	3	185867951	185867951	C	T	SNP	DGKG	ENST00000265022	human	ensembl	74_37	-1	known	silent	c.2304	p.A768	0.954	NULL	pfam_Diacylglycerol_kin_accessory,pfam_Diacylglycerol_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,smart_EF_hand_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Diacylglycerol_kinase_cat_dom,smart_Diacylglycerol_kin_accessory,pfscan_EF_hand_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd	-	no_errors	DGKG	HGNC	ENSG00000058866				53	0	0	21	12	36.3636
DNAJB11	0	genome.wustl.edu	37	3	186301745	186301745	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	3	186301745	186301745	A	G	SNP	DNAJB11	ENST00000265028	human	ensembl	74_37	+1	known	missense	c.832	p.T278A	0.032	pfam_DnaJ_C,superfamily_HSP40/DnaJ_pept-bd	pfam_DnaJ_C,pfam_DnaJ_domain,superfamily_DnaJ_domain,superfamily_HSP40/DnaJ_pept-bd,smart_DnaJ_domain,pfscan_DnaJ_domain,prints_DnaJ_domain	-	no_errors	DNAJB11	HGNC	ENSG00000090520				127	1	0.78125	88	7	7.36842
KNG1	0	genome.wustl.edu	37	3	186459742	186459742	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	3	186459742	186459742	G	A	SNP	KNG1	ENST00000265023	human	ensembl	74_37	+1	known	nonsense	c.1557	p.W519*	0.070	NULL	pfam_Prot_inh_cystat,smart_Prot_inh_cystat,prints_Kininogen	-	no_errors	KNG1	HGNC	ENSG00000113889				105	0	0	54	4	6.89655
LEPREL1	0	genome.wustl.edu	37	3	189711973	189711973	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	3	189711973	189711973	T	C	SNP	LEPREL1	ENST00000319332	human	ensembl	74_37	-1	known	missense	c.733	p.T245A	0.002	NULL	pfam_Oxoglu/Fe-dep_dioxygenase,smart_Pro_4_hyd_alph	-	no_errors	LEPREL1	HGNC	ENSG00000090530				122	0	0	69	35	33.6538
CCDC50	0	genome.wustl.edu	37	3	191093027	191093027	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	3	191093027	191093027	T	A	SNP	CCDC50	ENST00000392456	human	ensembl	74_37	+1	known	missense	c.625	p.S209T	0.000	NULL	NULL	-	no_errors	CCDC50	HGNC	ENSG00000152492				77	0	0	46	13	22.0339
ATP13A5-AS1	0	genome.wustl.edu	37	3	193025162	193025162	+	RNA	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	3	193025162	193025162	C	T	SNP	ATP13A5-AS1	ENST00000414634	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.434	-	-	-	no_errors	ATP13A5-AS1	HGNC	ENSG00000236508				85	0	0	32	14	30.4348
GP5	0	genome.wustl.edu	37	3	194117602	194117602	+	Silent	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	3	194117602	194117602	C	T	SNP	GP5	ENST00000323007	human	ensembl	74_37	-1	known	silent	c.1410	p.A470	0.000	smart_Cys-rich_flank_reg_C	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	GP5	HGNC	ENSG00000178732				61	0	0	27	15	35.7143
FAM43A	0	genome.wustl.edu	37	3	194407863	194407863	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	3	194407863	194407863	G	A	SNP	FAM43A	ENST00000329759	human	ensembl	74_37	+1	known	missense	c.308	p.G103D	1.000	smart_PTB/PI_dom	smart_PTB/PI_dom	-	no_errors	FAM43A	HGNC	ENSG00000185112				79	0	0	55	21	27.6316
FAM43A	0	genome.wustl.edu	37	3	194408754	194408754	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	3	194408754	194408754	C	T	SNP	FAM43A	ENST00000329759	human	ensembl	74_37	+1	known	missense	c.1199	p.A400V	0.967	NULL	smart_PTB/PI_dom	-	no_errors	FAM43A	HGNC	ENSG00000185112				17	0	0	5	4	44.4444
XXYLT1	0	genome.wustl.edu	37	3	194790661	194790661	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	3	194790661	194790661	T	C	SNP	XXYLT1	ENST00000310380	human	ensembl	74_37	-1	known	missense	c.965	p.Y322C	1.000	pfam_Glyco_trans_8	pfam_Glyco_trans_8	-	no_errors	XXYLT1	HGNC	ENSG00000173950				100	0	0	87	12	12.1212
KCNH8	0	genome.wustl.edu	37	3	19554757	19554757	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	3	19554757	19554757	A	G	SNP	KCNH8	ENST00000328405	human	ensembl	74_37	+1	known	missense	c.2375	p.K792R	1.000	NULL	pfam_Ion_trans_dom,pfam_cNMP-bd_dom,pfam_2pore_dom_K_chnl_dom,pfam_PAS_fold_3,pfam_PAS_4,pfam_PAS_fold,superfamily_cNMP-bd-like,superfamily_PAS,superfamily_tRNA-bd_arm,smart_PAC,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom,pfscan_PAS-assoc_C,prints_K_chnl_volt-dep_EAG/ELK/ERG,prints_K_chnl_volt-dep_ELK,prints_K_chnl_volt-dep_ERG,prints_K_chnl_volt-dep_EAG,tigrfam_PAS	-	no_errors	KCNH8	HGNC	ENSG00000183960				232	0	0	116	62	34.8315
SDHAP1	0	genome.wustl.edu	37	3	195711466	195711466	+	RNA	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	3	195711466	195711466	G	A	SNP	SDHAP1	ENST00000427841	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	SDHAP1	HGNC	ENSG00000185485				108	0	0	51	6	10.5263
TFRC	0	genome.wustl.edu	37	3	195798336	195798336	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	3	195798336	195798336	G	A	SNP	TFRC	ENST00000360110	human	ensembl	74_37	-1	known	silent	c.618	p.N206	0.000	NULL	pfam_TFR-like_dimer_dom,pfam_Peptidase_M28,pfam_Protease-assoc_domain,superfamily_TFR-like_dimer_dom	-	no_errors	TFRC	HGNC	ENSG00000072274				249	0	0	126	55	30.3867
RARB	0	genome.wustl.edu	37	3	25637960	25637960	+	Silent	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	3	25637960	25637960	A	G	SNP	RARB	ENST00000404969	human	ensembl	74_37	+1	known	silent	c.1221	p.P407	0.140	pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,prints_Nuc_orph_rcpt	pfam_Znf_hrmn_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Retinoic_acid_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,prints_Nuc_orph_rcpt,prints_Retinoid-X_rcpt/HNF4	-	no_errors	RARB	HGNC	ENSG00000077092				263	0	0	133	46	25.6983
TOP2B	0	genome.wustl.edu	37	3	25665877	25665877	+	Silent	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	3	25665877	25665877	A	G	SNP	TOP2B	ENST00000264331	human	ensembl	74_37	-1	known	silent	c.2406	p.I802	0.993	pfam_Topo_IIA_A/C,superfamily_Topo_IIA_like_dom,smart_Topo_IIA_A/C	pfam_Topo_IIA_A/C,pfam_Topo_IIA_bsu_dom2,pfam_DTHCT,pfam_HATPase_ATP-bd,superfamily_Topo_IIA_like_dom,superfamily_HATPase_ATP-bd,superfamily_Ribosomal_S5_D2-typ_fold,smart_Topo_IIA,smart_Topo_IIA_A/C,prints_TopoII_euk,prints_Topo_IIA,prints_Transcrpt_fac_NFYB/HAP3	-	no_errors	TOP2B	HGNC	ENSG00000077097				182	0	0	113	10	8.13008
OXSM	0	genome.wustl.edu	37	3	25835717	25835717	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	3	25835717	25835717	C	T	SNP	OXSM	ENST00000280701	human	ensembl	74_37	+1	known	missense	c.1112	p.A371V	0.100	pfam_Ketoacyl_synth_C,superfamily_Thiolase-like,smart_PKS_Beta-ketoAc_synthase_dom,tigrfam_3-oxoacyl-ACP_synth-2	pfam_Ketoacyl_synth_N,pfam_Ketoacyl_synth_C,pfam_Thiolase_N,superfamily_Thiolase-like,smart_PKS_Beta-ketoAc_synthase_dom,tigrfam_3-oxoacyl-ACP_synth-2	-	no_errors	OXSM	HGNC	ENSG00000151093				145	0	0	84	6	6.66667
LRRC3B	0	genome.wustl.edu	37	3	26751767	26751767	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	3	26751767	26751767	A	G	SNP	LRRC3B	ENST00000396641	human	ensembl	74_37	+1	known	missense	c.604	p.T202A	1.000	NULL	pfam_Leu-rich_rpt,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC3B	HGNC	ENSG00000179796				59	0	0	30	12	28.5714
SLC4A7	0	genome.wustl.edu	37	3	27444675	27444675	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	3	27444675	27444675	T	A	SNP	SLC4A7	ENST00000454389	human	ensembl	74_37	-1	known	missense	c.2276	p.Y759F	1.000	pfam_HCO3_transpt_C,tigrfam_HCO3_transpt_euk	pfam_HCO3_transpt_C,pfam_Band3_cytoplasmic_dom,superfamily_PTrfase/Anion_transptr,prints_HCO3_transpt_euk,tigrfam_HCO3_transpt_euk	-	no_errors	SLC4A7	HGNC	ENSG00000033867				170	0	0	117	12	9.30233
SLC4A7	0	genome.wustl.edu	37	3	27472885	27472885	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	3	27472885	27472885	T	C	SNP	SLC4A7	ENST00000454389	human	ensembl	74_37	-1	known	missense	c.1054	p.I352V	0.958	pfam_Band3_cytoplasmic_dom	pfam_HCO3_transpt_C,pfam_Band3_cytoplasmic_dom,superfamily_PTrfase/Anion_transptr,prints_HCO3_transpt_euk,tigrfam_HCO3_transpt_euk	-	no_errors	SLC4A7	HGNC	ENSG00000033867				356	0	0	204	14	6.42202
ZCWPW2	0	genome.wustl.edu	37	3	28562525	28562525	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	3	28562525	28562525	T	C	SNP	ZCWPW2	ENST00000383768	human	ensembl	74_37	+1	known	missense	c.827	p.M276T	1.000	NULL	pfam_Znf_CW,pfam_PWWP_dom,pfscan_PWWP_dom,pfscan_Znf_CW	-	no_errors	ZCWPW2	HGNC	ENSG00000206559				79	0	0	37	17	31.4815
CRBN	0	genome.wustl.edu	37	3	3209403	3209403	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	3	3209403	3209403	G	A	SNP	CRBN	ENST00000231948	human	ensembl	74_37	-1	known	missense	c.602	p.S201F	1.000	pfam_Pept_S16_N,superfamily_PUA-like_domain,smart_Pept_S16_N	pfam_Pept_S16_N,superfamily_PUA-like_domain,smart_Pept_S16_N	-	no_errors	CRBN	HGNC	ENSG00000113851				264	0	0	154	57	27.0142
TRIM71	0	genome.wustl.edu	37	3	32860312	32860312	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	3	32860312	32860312	C	T	SNP	TRIM71	ENST00000383763	human	ensembl	74_37	+1	known	missense	c.740	p.A247V	0.935	NULL	pfam_NHL_repeat,pfam_Filamin/ABP280_repeat-like,pfam_Znf_B-box,superfamily_Ig_E-set,smart_Znf_RING,smart_Znf_B-box,smart_Filamin,pfscan_Filamin/ABP280_repeat-like,pfscan_NHL_repeat_subgr,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM71	HGNC	ENSG00000206557				85	0	0	27	13	32.5
TRIM71	0	genome.wustl.edu	37	3	32932496	32932496	+	Silent	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	3	32932496	32932496	T	C	SNP	TRIM71	ENST00000383763	human	ensembl	74_37	+1	known	silent	c.1800	p.G600	0.503	pfscan_NHL_repeat_subgr	pfam_NHL_repeat,pfam_Filamin/ABP280_repeat-like,pfam_Znf_B-box,superfamily_Ig_E-set,smart_Znf_RING,smart_Znf_B-box,smart_Filamin,pfscan_Filamin/ABP280_repeat-like,pfscan_NHL_repeat_subgr,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM71	HGNC	ENSG00000206557				94	0	0	43	21	32.8125
ARPP21	0	genome.wustl.edu	37	3	35835235	35835235	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	3	35835235	35835235	T	C	SNP	ARPP21	ENST00000417925	human	ensembl	74_37	+1	known	missense	c.2227	p.Y743H	0.996	NULL	pfam_R3H_ss-bd,smart_R3H_ss-bd,pfscan_R3H_ss-bd	-	no_errors	ARPP21	HGNC	ENSG00000172995				138	0	0	69	11	13.75
GOLGA4	0	genome.wustl.edu	37	3	37368396	37368396	+	Silent	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	3	37368396	37368396	T	C	SNP	GOLGA4	ENST00000361924	human	ensembl	74_37	+1	known	silent	c.5019	p.H1673	0.002	NULL	pfam_GRIP,superfamily_GRIP,superfamily_tRNA-bd_arm,superfamily_t-SNARE,superfamily_Prefoldin,smart_GRIP,pfscan_GRIP	-	no_errors	GOLGA4	HGNC	ENSG00000144674				318	0	0	132	55	29.4118
EXOG	0	genome.wustl.edu	37	3	38565616	38565616	+	Silent	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	3	38565616	38565616	C	T	SNP	EXOG	ENST00000287675	human	ensembl	74_37	+1	known	silent	c.870	p.I290	0.066	NULL	pfam_DNA/RNA_non-sp_Endonuclease,smart_DNA/RNA_non-sp_Endonuclease,smart_Extracellular_endonuc_su_A	-	no_errors	EXOG	HGNC	ENSG00000157036				408	0	0	188	88	31.8841
SCN10A	0	genome.wustl.edu	37	3	38781019	38781019	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	3	38781019	38781019	C	T	SNP	SCN10A	ENST00000449082	human	ensembl	74_37	-1	known	missense	c.2267	p.R756Q	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_Na_trans_assoc,pfam_PKD1_2_channel,prints_Na_channel_asu,prints_PKD_2	-	no_errors	SCN10A	HGNC	ENSG00000185313				91	0	0	42	22	34.375
TTC21A	0	genome.wustl.edu	37	3	39170435	39170435	+	RNA	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	3	39170435	39170435	C	T	SNP	TTC21A	ENST00000466875	human	ensembl	74_37	+1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	TTC21A	HGNC	ENSG00000168026				120	0	0	43	22	33.8462
TTC21A	0	genome.wustl.edu	37	3	39179775	39179775	+	Silent	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	3	39179775	39179775	T	C	SNP	TTC21A	ENST00000301819	human	ensembl	74_37	+1	known	silent	c.3717	p.Y1239	0.961	pfscan_TPR-contain_dom	pfam_TPR_1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC21A	HGNC	ENSG00000168026				78	0	0	40	19	32.2034
XIRP1	0	genome.wustl.edu	37	3	39228088	39228088	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	3	39228088	39228088	G	A	SNP	XIRP1	ENST00000340369	human	ensembl	74_37	-1	known	missense	c.2849	p.A950V	0.282	NULL	pfam_Actin-binding_Xin_repeat	-	no_errors	XIRP1	HGNC	ENSG00000168334				134	0	0	83	5	5.68182
XIRP1	0	genome.wustl.edu	37	3	39230771	39230771	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	3	39230771	39230771	G	A	SNP	XIRP1	ENST00000340369	human	ensembl	74_37	-1	known	missense	c.166	p.R56C	1.000	NULL	pfam_Actin-binding_Xin_repeat	-	no_errors	XIRP1	HGNC	ENSG00000168334				91	0	0	44	16	26.6667
MYRIP	0	genome.wustl.edu	37	3	40204292	40204292	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	3	40204292	40204292	C	T	SNP	MYRIP	ENST00000302541	human	ensembl	74_37	+1	known	nonsense	c.541	p.Q181*	1.000	pfam_Myrip/Melanophilin	pfam_Myrip/Melanophilin,superfamily_Znf_FYVE_PHD,pfscan_Znf_FYVE-typ	-	no_errors	MYRIP	HGNC	ENSG00000170011				141	0	0	51	22	30.137
MYRIP	0	genome.wustl.edu	37	3	40211476	40211476	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	3	40211476	40211476	A	C	SNP	MYRIP	ENST00000302541	human	ensembl	74_37	+1	known	missense	c.765	p.Q255H	0.000	pfam_Myrip/Melanophilin	pfam_Myrip/Melanophilin,superfamily_Znf_FYVE_PHD,pfscan_Znf_FYVE-typ	-	no_errors	MYRIP	HGNC	ENSG00000170011				156	1	0.636943	74	36	32.7273
ZNF662	0	genome.wustl.edu	37	3	42950328	42950328	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	3	42950328	42950328	G	A	SNP	ZNF662	ENST00000328199	human	ensembl	74_37	+1	known	silent	c.258	p.E86	0.918	superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF662	HGNC	ENSG00000182983				329	0	0	188	86	31.3869
SNRK	0	genome.wustl.edu	37	3	43390009	43390009	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	3	43390009	43390009	T	C	SNP	SNRK	ENST00000296088	human	ensembl	74_37	+1	known	missense	c.2258	p.L753P	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Prot_kinase_dom	-	no_errors	SNRK	HGNC	ENSG00000163788				62	0	0	32	12	27.2727
SETMAR	0	genome.wustl.edu	37	3	4355148	4355148	+	Silent	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	3	4355148	4355148	A	G	SNP	SETMAR	ENST00000358065	human	ensembl	74_37	+1	known	silent	c.723	p.V241	0.996	pfam_SET_dom,smart_SET_dom,pfscan_SET_dom	pfam_Transposase_1,pfam_SET_dom,pfam_Pre-SET_dom,pfam_Transposase_Tc1-like,pfam_Transposase_14,superfamily_Homeodomain-like,smart_Pre-SET_Zn-bd_sub,smart_SET_dom,pfscan_SET_dom,pfscan_Pre-SET_dom,pfscan_Post-SET_dom	-	no_errors	SETMAR	HGNC	ENSG00000170364				156	1	0.636943	83	12	12.6316
ZNF197	0	genome.wustl.edu	37	3	44685542	44685542	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	3	44685542	44685542	A	G	SNP	ZNF197	ENST00000344387	human	ensembl	74_37	+1	known	missense	c.2920	p.T974A	0.002	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Tscrpt_reg_SCAN,pfam_Krueppel-associated_box,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF197	HGNC	ENSG00000186448				135	0	0	60	30	33.3333
ZNF35	0	genome.wustl.edu	37	3	44700874	44700874	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	3	44700874	44700874	G	A	SNP	ZNF35	ENST00000396056	human	ensembl	74_37	+1	known	missense	c.1019	p.G340E	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF35	HGNC	ENSG00000169981				89	0	0	44	30	40.5405
KIAA1143	0	genome.wustl.edu	37	3	44795767	44795767	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	3	44795767	44795767	A	G	SNP	KIAA1143	ENST00000296121	human	ensembl	74_37	-1	known	missense	c.202	p.S68P	0.983	NULL	NULL	-	no_errors	KIAA1143	HGNC	ENSG00000163807				182	0	0	119	17	12.5
KIF15	0	genome.wustl.edu	37	3	44816918	44816918	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	3	44816918	44816918	G	A	SNP	KIF15	ENST00000438321	human	ensembl	74_37	+1	known	nonsense	c.192	p.W64*	0.995	NULL	NULL	-	no_errors	KIF15	HGNC	ENSG00000163808				118	0	0	61	13	17.5676
ITPR1	0	genome.wustl.edu	37	3	4715002	4715002	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	3	4715002	4715002	A	G	SNP	ITPR1	ENST00000302640	human	ensembl	74_37	+1	known	missense	c.2342	p.Q781R	1.000	NULL	pfam_Ca-rel_channel,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,smart_MIR_motif,prints_InsP3_rcpt-bd,pfscan_MIR_motif	-	no_errors	ITPR1	HGNC	ENSG00000150995				163	0	0	96	44	31.4286
PTPN23	0	genome.wustl.edu	37	3	47447981	47447981	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	3	47447981	47447981	A	G	SNP	PTPN23	ENST00000265562	human	ensembl	74_37	+1	known	missense	c.638	p.Y213C	1.000	pfam_BRO1_dom,pfscan_BRO1_dom	pfam_BRO1_dom,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_BRO1_dom,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPN23	HGNC	ENSG00000076201				93	0	0	73	8	9.87654
SCAP	0	genome.wustl.edu	37	3	47461115	47461115	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	3	47461115	47461115	G	A	SNP	SCAP	ENST00000265565	human	ensembl	74_37	-1	known	missense	c.1643	p.T548M	0.999	NULL	pfam_Patched,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_SSD,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	SCAP	HGNC	ENSG00000114650				151	0	0	68	39	36.4486
ELP6	0	genome.wustl.edu	37	3	47537573	47537573	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	3	47537573	47537573	G	A	SNP	ELP6	ENST00000296149	human	ensembl	74_37	-1	known	missense	c.787	p.P263S	1.000	NULL	pfam_UPF0405	-	no_errors	ELP6	HGNC	ENSG00000163832				116	0	0	57	23	28.75
DHX30	0	genome.wustl.edu	37	3	47888784	47888784	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	3	47888784	47888784	G	A	SNP	DHX30	ENST00000445061	human	ensembl	74_37	+1	known	missense	c.1951	p.D651N	0.989	superfamily_P-loop_NTPase	pfam_Helicase-assoc_dom,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_DUF1605,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DHX30	HGNC	ENSG00000132153				173	0	0	100	52	34.2105
ATRIP	0	genome.wustl.edu	37	3	48506470	48506470	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	3	48506470	48506470	A	G	SNP	ATRIP	ENST00000320211	human	ensembl	74_37	+1	known	missense	c.2296	p.T766A	0.920	NULL	NULL	-	no_errors	ATRIP	HGNC	ENSG00000164053				141	1	0.704225	101	9	8.18182
SHISA5	0	genome.wustl.edu	37	3	48510800	48510800	+	Silent	SNP	G	G	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	3	48510800	48510800	G	T	SNP	SHISA5	ENST00000296444	human	ensembl	74_37	-1	known	silent	c.603	p.A201	1.000	NULL	NULL	-	no_errors	SHISA5	HGNC	ENSG00000164054				255	1	0.390625	178	18	9.18367
UQCRC1	0	genome.wustl.edu	37	3	48638787	48638787	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	3	48638787	48638787	C	T	SNP	UQCRC1	ENST00000203407	human	ensembl	74_37	-1	known	missense	c.820	p.E274K	1.000	pfam_Peptidase_M16_C,superfamily_Metalloenz_LuxS/M16	pfam_Pept_M16_N,pfam_Peptidase_M16_C,superfamily_Metalloenz_LuxS/M16	-	no_errors	UQCRC1	HGNC	ENSG00000010256				49	0	0	32	13	28.8889
CELSR3	0	genome.wustl.edu	37	3	48692534	48692534	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	3	48692534	48692534	C	T	SNP	CELSR3	ENST00000544264	human	ensembl	74_37	-1	known	missense	c.4931	p.G1644D	1.000	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,pfscan_Laminin_G	pfam_Cadherin,pfam_GPCR_2_secretin-like,pfam_Laminin_G,pfam_DUF3497,pfam_EG-like_dom,pfam_EGF_laminin,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,smart_EGF_laminin,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_GPS_dom,pfscan_Laminin_G,pfscan_Cadherin,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_Cadherin,prints_GPCR_2_secretin-like	-	no_errors	CELSR3	HGNC	ENSG00000008300				103	0	0	48	21	30.4348
CELSR3	0	genome.wustl.edu	37	3	48699322	48699322	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	3	48699322	48699322	G	T	SNP	CELSR3	ENST00000544264	human	ensembl	74_37	-1	known	missense	c.746	p.P249Q	0.978	NULL	pfam_Cadherin,pfam_GPCR_2_secretin-like,pfam_Laminin_G,pfam_DUF3497,pfam_EG-like_dom,pfam_EGF_laminin,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,smart_EGF_laminin,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_GPS_dom,pfscan_Laminin_G,pfscan_Cadherin,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_Cadherin,prints_GPCR_2_secretin-like	-	no_errors	CELSR3	HGNC	ENSG00000008300				176	0	0	79	41	34.1667
QRICH1	0	genome.wustl.edu	37	3	49084644	49084644	+	Silent	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	3	49084644	49084644	C	T	SNP	QRICH1	ENST00000357496	human	ensembl	74_37	-1	known	silent	c.1374	p.Q458	0.994	NULL	pfam_DUF3504,superfamily_DEATH-like_dom	-	no_errors	QRICH1	HGNC	ENSG00000198218				163	0	0	89	33	27.0492
QARS	0	genome.wustl.edu	37	3	49137466	49137466	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	3	49137466	49137466	A	G	SNP	QARS	ENST00000306125	human	ensembl	74_37	-1	known	missense	c.1223	p.M408T	1.000	pfam_Glu/Gln-tRNA-synth_Ib_cat-dom,tigrfam_Gln-tRNA-synth	pfam_Glu/Gln-tRNA-synth_Ib_cat-dom,pfam_Gln-tRNA-synth_Ib_RNA-bd_N,pfam_Glu/Gln-tRNA-synth_Ib_codon-bd,pfam_Gln-tRNA-synth_Ib_RNA-bd_2,superfamily_Ribosomal_L25/Gln-tRNA_synth,prints_Glu/Gln-tRNA-synth,tigrfam_Gln-tRNA-synth	-	no_errors	QARS	HGNC	ENSG00000172053				195	0	0	94	38	28.7879
USP19	0	genome.wustl.edu	37	3	49149178	49149178	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	3	49149178	49149178	C	A	SNP	USP19	ENST00000398888	human	ensembl	74_37	-1	known	missense	c.2663	p.G888V	0.996	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	pfam_Peptidase_C19/C67,pfam_Znf_MYND,pfam_CS_dom,superfamily_HSP20-like_chaperone,pfscan_CS_dom,pfscan_Znf_MYND,pfscan_Peptidase_C19/C67	-	no_errors	USP19	HGNC	ENSG00000172046				142	1	0.699301	71	28	28.2828
USP19	0	genome.wustl.edu	37	3	49153556	49153556	+	Silent	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	3	49153556	49153556	C	T	SNP	USP19	ENST00000398888	human	ensembl	74_37	-1	known	silent	c.1092	p.T364	0.371	superfamily_HSP20-like_chaperone,pfscan_CS_dom	pfam_Peptidase_C19/C67,pfam_Znf_MYND,pfam_CS_dom,superfamily_HSP20-like_chaperone,pfscan_CS_dom,pfscan_Znf_MYND,pfscan_Peptidase_C19/C67	-	no_errors	USP19	HGNC	ENSG00000172046				77	0	0	34	11	24.4444
USP4	0	genome.wustl.edu	37	3	49362429	49362429	+	Silent	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	3	49362429	49362429	C	T	SNP	USP4	ENST00000265560	human	ensembl	74_37	-1	known	silent	c.531	p.A177	0.001	NULL	pfam_Peptidase_C19/C67,pfam_Pept_C19_DUSP,smart_Pept_C19_DUSP,pfscan_Peptidase_C19/C67	-	no_errors	USP4	HGNC	ENSG00000114316				274	0	0	117	60	33.8983
DAG1	0	genome.wustl.edu	37	3	49570262	49570262	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	3	49570262	49570262	T	C	SNP	DAG1	ENST00000308775	human	ensembl	74_37	+1	known	missense	c.2318	p.I773T	1.000	pfam_DAG1	pfam_DAG1,superfamily_Alpha-dystroglycan_domain_2,superfamily_Cadherin-like,smart_Cadg	-	no_errors	DAG1	HGNC	ENSG00000173402				64	0	0	46	5	9.80392
BSN	0	genome.wustl.edu	37	3	49690049	49690049	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	3	49690049	49690049	G	T	SNP	BSN	ENST00000296452	human	ensembl	74_37	+1	known	missense	c.3060	p.K1020N	1.000	NULL	pfam_Znf_piccolo,superfamily_Znf_FYVE_PHD	-	no_errors	BSN	HGNC	ENSG00000164061				116	0	0	43	26	37.6812
IP6K1	0	genome.wustl.edu	37	3	49765012	49765012	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	3	49765012	49765012	C	T	SNP	IP6K1	ENST00000321599	human	ensembl	74_37	-1	known	missense	c.869	p.R290H	1.000	pfam_IPK	pfam_IPK	-	no_errors	IP6K1	HGNC	ENSG00000176095				129	1	0.769231	71	34	32.381
RBM6	0	genome.wustl.edu	37	3	50095840	50095840	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	3	50095840	50095840	A	G	SNP	RBM6	ENST00000266022	human	ensembl	74_37	+1	known	missense	c.1975	p.M659V	1.000	smart_RRM_dom	pfam_G_patch_dom,smart_RRM_dom,smart_G_patch_dom,pfscan_G_patch_dom,pfscan_RRM_dom	-	no_errors	RBM6	HGNC	ENSG00000004534				572	1	0.17452	305	124	28.9044
GNAI2	0	genome.wustl.edu	37	3	50293715	50293715	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	3	50293715	50293715	G	A	SNP	GNAI2	ENST00000313601	human	ensembl	74_37	+1	known	missense	c.556	p.V186M	1.000	pfam_Gprotein_alpha_su,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,smart_Gprotein_alpha_su,prints_Gprotein_alpha_su,prints_Gprotein_alpha_I,prints_Fungi_Gprotein_alpha	pfam_Gprotein_alpha_su,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,superfamily_GproteinA_insert,smart_Gprotein_alpha_su,prints_Gprotein_alpha_su,prints_Gprotein_alpha_I,prints_Fungi_Gprotein_alpha	-	no_errors	GNAI2	HGNC	ENSG00000114353				110	0	0	48	26	35.1351
RASSF1	0	genome.wustl.edu	37	3	50368119	50368119	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	3	50368119	50368119	G	A	SNP	RASSF1	ENST00000357043	human	ensembl	74_37	-1	known	missense	c.928	p.R310C	1.000	pfscan_SARAH_dom	pfam_Ras-assoc,pfam_Prot_Kinase_C-like_PE/DAG-bd,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Ras-assoc,pfscan_Ras-assoc,pfscan_SARAH_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd	-	no_errors	RASSF1	HGNC	ENSG00000068028				129	0	0	61	27	30.6818
PCBP4	0	genome.wustl.edu	37	3	51993259	51993259	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	3	51993259	51993259	G	T	SNP	PCBP4	ENST00000395014	human	ensembl	74_37	-1	known	missense	c.749	p.P250H	1.000	NULL	pfam_KH_dom_type_1,smart_KH_dom,pfscan_KH_dom_type_1	-	no_errors	PCBP4	HGNC	ENSG00000090097				84	0	0	75	6	7.40741
TLR9	0	genome.wustl.edu	37	3	52257500	52257500	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	3	52257500	52257500	C	T	SNP	TLR9	ENST00000597542	human	ensembl	74_37	-1	known	missense	c.904	p.D302N	0.000	NULL	pfam_Leu-rich_rpt,pfam_TIR_dom,superfamily_TIR_dom,smart_Leu-rich_rpt_typical-subtyp,smart_TIR_dom,pfscan_TIR_dom	-	no_errors	TLR9	HGNC	ENSG00000239732				72	0	0	47	9	16.0714
DNAH1	0	genome.wustl.edu	37	3	52429688	52429688	+	Silent	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	3	52429688	52429688	C	T	SNP	DNAH1	ENST00000420323	human	ensembl	74_37	+1	known	silent	c.11253	p.P3751	0.724	pfam_Dynein_heavy_dom	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase	-	no_errors	DNAH1	HGNC	ENSG00000114841				36	0	0	12	9	42.8571
NISCH	0	genome.wustl.edu	37	3	52522235	52522235	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	3	52522235	52522235	G	A	SNP	NISCH	ENST00000345716	human	ensembl	74_37	+1	known	nonsense	c.2727	p.W909*	1.000	NULL	pfam_Phox,pfam_Leu-rich_rpt,superfamily_Phox,smart_Phox,pfscan_Phox	-	no_errors	NISCH	HGNC	ENSG00000010322				120	0	0	84	7	7.69231
STAB1	0	genome.wustl.edu	37	3	52540711	52540711	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	3	52540711	52540711	C	T	SNP	STAB1	ENST00000321725	human	ensembl	74_37	+1	known	missense	c.1834	p.R612C	1.000	pfam_FAS1_domain,superfamily_FAS1_domain,smart_FAS1_domain,pfscan_FAS1_domain	pfam_FAS1_domain,pfam_Link,superfamily_C-type_lectin_fold,superfamily_FAS1_domain,smart_EG-like_dom,smart_EGF_laminin,smart_FAS1_domain,smart_EGF-like_Ca-bd_dom,smart_Link,pfscan_EG-like_dom,pfscan_FAS1_domain,pfscan_Link	-	no_errors	STAB1	HGNC	ENSG00000010327				32	0	0	13	6	31.5789
STAB1	0	genome.wustl.edu	37	3	52556376	52556376	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	3	52556376	52556376	T	C	SNP	STAB1	ENST00000321725	human	ensembl	74_37	+1	known	missense	c.6496	p.Y2166H	1.000	smart_EG-like_dom,pfscan_EG-like_dom	pfam_FAS1_domain,pfam_Link,superfamily_C-type_lectin_fold,superfamily_FAS1_domain,smart_EG-like_dom,smart_EGF_laminin,smart_FAS1_domain,smart_EGF-like_Ca-bd_dom,smart_Link,pfscan_EG-like_dom,pfscan_FAS1_domain,pfscan_Link	-	no_errors	STAB1	HGNC	ENSG00000010327				124	0	0	85	9	9.57447
CACNA1D	0	genome.wustl.edu	37	3	53766111	53766111	+	Splice_Site	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	3	53766111	53766111	T	C	SNP	CACNA1D	ENST00000288139	human	ensembl	74_37	+1	known	splice_site	c.2533+2	e19+2	1.000	-	-	-	no_errors	CACNA1D	HGNC	ENSG00000157388				110	0	0	73	5	6.41026
CACNA1D	0	genome.wustl.edu	37	3	53783469	53783469	+	Silent	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	3	53783469	53783469	T	C	SNP	CACNA1D	ENST00000288139	human	ensembl	74_37	+1	known	silent	c.3549	p.Y1183	1.000	prints_VDCCAlpha1	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCCAlpha1,prints_VDCC_L_a1su,prints_LVDCC_a1dsu	-	no_errors	CACNA1D	HGNC	ENSG00000157388				136	0	0	59	33	35.8696
CACNA1D	0	genome.wustl.edu	37	3	53844288	53844288	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	3	53844288	53844288	G	A	SNP	CACNA1D	ENST00000288139	human	ensembl	74_37	+1	known	missense	c.6215	p.S2072N	1.000	NULL	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCCAlpha1,prints_VDCC_L_a1su,prints_LVDCC_a1dsu	-	no_errors	CACNA1D	HGNC	ENSG00000157388				154	0	0	107	9	7.75862
ACTR8	0	genome.wustl.edu	37	3	53904097	53904097	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	3	53904097	53904097	T	C	SNP	ACTR8	ENST00000335754	human	ensembl	74_37	-1	known	missense	c.1643	p.Q548R	1.000	pfam_Actin-related,smart_Actin-related	pfam_Actin-related,smart_Actin-related	-	no_errors	ACTR8	HGNC	ENSG00000113812				181	0	0	142	8	5.33333
LRTM1	0	genome.wustl.edu	37	3	54958882	54958882	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	3	54958882	54958882	T	C	SNP	LRTM1	ENST00000273286	human	ensembl	74_37	-1	known	missense	c.368	p.Q123R	0.002	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	LRTM1	HGNC	ENSG00000144771				133	0	0	49	31	38.75
APPL1	0	genome.wustl.edu	37	3	57294720	57294720	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	3	57294720	57294720	T	C	SNP	APPL1	ENST00000288266	human	ensembl	74_37	+1	known	missense	c.1760	p.V587A	1.000	pfam_PTB/PI_dom,smart_PTB/PI_dom,pfscan_PTB/PI_dom	pfam_PTB/PI_dom,smart_Pleckstrin_homology,smart_PTB/PI_dom,pfscan_Pleckstrin_homology,pfscan_PTB/PI_dom	-	no_errors	APPL1	HGNC	ENSG00000157500				434	0	0	268	94	25.9669
FLNB	0	genome.wustl.edu	37	3	57994331	57994331	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	3	57994331	57994331	T	C	SNP	FLNB	ENST00000295956	human	ensembl	74_37	+1	known	missense	c.40	p.W14R	1.000	superfamily_CH-domain	pfam_Filamin/ABP280_repeat-like,pfam_CH-domain,superfamily_CH-domain,superfamily_Ig_E-set,smart_CH-domain,smart_Filamin,pfscan_CH-domain,pfscan_Filamin/ABP280_repeat-like	-	no_errors	FLNB	HGNC	ENSG00000136068				37	0	0	29	5	14.7059
ABHD6	0	genome.wustl.edu	37	3	58279454	58279454	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	3	58279454	58279454	T	C	SNP	ABHD6	ENST00000295962	human	ensembl	74_37	+1	known	missense	c.976	p.S326P	0.023	NULL	pfam_AB_hydrolase_1,pfam_Ndr,prints_AB_hydrolase_1,prints_Epox_hydrolase-like	-	no_errors	ABHD6	HGNC	ENSG00000163686				111	0	0	63	28	30.7692
KCTD6	0	genome.wustl.edu	37	3	58484481	58484481	+	RNA	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	3	58484481	58484481	A	G	SNP	KCTD6	ENST00000479470	human	ensembl	74_37	+1	putative	rna	NULL	NULL	1.000	-	-	-	no_errors	KCTD6	HGNC	ENSG00000168301				190	0	0	122	56	31.4607
MAGI1	0	genome.wustl.edu	37	3	65415576	65415576	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	3	65415576	65415576	T	G	SNP	MAGI1	ENST00000402939	human	ensembl	74_37	-1	known	missense	c.1786	p.S596R	1.000	NULL	pfam_PDZ,pfam_WW_dom,pfam_GK/Ca_channel_bsu,superfamily_PDZ,superfamily_P-loop_NTPase,superfamily_WW_dom,smart_PDZ,smart_GK/Ca_channel_bsu,smart_WW_dom,pfscan_PDZ,pfscan_WW_dom,pfscan_Guanylate_kin-like	-	no_errors	MAGI1	HGNC	ENSG00000151276				151	0	0	64	35	35.3535
MAGI1	0	genome.wustl.edu	37	3	66023680	66023680	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	3	66023680	66023680	C	A	SNP	MAGI1	ENST00000402939	human	ensembl	74_37	-1	known	missense	c.304	p.V102F	1.000	superfamily_PDZ,smart_PDZ,pfscan_PDZ,pfscan_Guanylate_kin-like	pfam_PDZ,pfam_WW_dom,pfam_GK/Ca_channel_bsu,superfamily_PDZ,superfamily_P-loop_NTPase,superfamily_WW_dom,smart_PDZ,smart_GK/Ca_channel_bsu,smart_WW_dom,pfscan_PDZ,pfscan_WW_dom,pfscan_Guanylate_kin-like	-	no_errors	MAGI1	HGNC	ENSG00000151276				340	0	0	196	30	13.2743
LRIG1	0	genome.wustl.edu	37	3	66436422	66436422	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	3	66436422	66436422	G	A	SNP	LRIG1	ENST00000273261	human	ensembl	74_37	-1	known	missense	c.1772	p.A591V	1.000	pfam_Ig_I-set,pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Leu-rich_rpt,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Cys-rich_flank_reg_C,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	LRIG1	HGNC	ENSG00000144749				165	0	0	126	7	5.26316
SUCLG2	0	genome.wustl.edu	37	3	67568750	67568750	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	3	67568750	67568750	T	C	SNP	SUCLG2	ENST00000307227	human	ensembl	74_37	-1	known	missense	c.581	p.D194G	1.000	pfam_ATP-grasp_succ-CoA_synth-type,tigrfam_Succ_CoA_synthase_bsu	pfam_ATP-grasp_succ-CoA_synth-type,pfam_CoA_ligase,superfamily_Succinyl-CoA_synth-like,tigrfam_Succ_CoA_synthase_bsu	-	no_errors	SUCLG2	HGNC	ENSG00000172340				132	0	0	67	24	26.3736
FOXP1	0	genome.wustl.edu	37	3	71247436	71247436	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	3	71247436	71247436	G	A	SNP	FOXP1	ENST00000318789	human	ensembl	74_37	-1	known	missense	c.97	p.R33W	0.999	NULL	pfam_TF_fork_head,smart_TF_fork_head,prints_TF_fork_head,pfscan_TF_fork_head	-	no_errors	FOXP1	HGNC	ENSG00000114861				375	0	0	195	71	26.6917
PPP4R2	0	genome.wustl.edu	37	3	73108188	73108188	+	Silent	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	3	73108188	73108188	T	C	SNP	PPP4R2	ENST00000356692	human	ensembl	74_37	+1	known	silent	c.288	p.G96	0.998	pfam_PPP4R2	pfam_PPP4R2	-	no_errors	PPP4R2	HGNC	ENSG00000163605				49	0	0	22	10	31.25
CNTN3	0	genome.wustl.edu	37	3	74383946	74383946	+	Silent	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	3	74383946	74383946	A	G	SNP	CNTN3	ENST00000263665	human	ensembl	74_37	-1	known	silent	c.1608	p.Y536	0.650	pfam_Ig_I-set,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	CNTN3	HGNC	ENSG00000113805				249	0	0	128	50	28.0899
ROBO2	0	genome.wustl.edu	37	3	77623872	77623872	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	3	77623872	77623872	A	G	SNP	ROBO2	ENST00000461745	human	ensembl	74_37	+1	known	missense	c.2194	p.T732A	0.998	superfamily_Fibronectin_type3	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	ROBO2	HGNC	ENSG00000185008				52	0	0	25	8	24.2424
GBE1	0	genome.wustl.edu	37	3	81548278	81548278	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	3	81548278	81548278	G	A	SNP	GBE1	ENST00000429644	human	ensembl	74_37	-1	known	missense	c.2035	p.R679C	0.774	pfam_A-amylase_b_C	pfam_A-amylase_b_C,pfam_Glyco_hydro_13_cat_dom,pfam_Glyco_hydro_13_N,superfamily_Glycoside_hydrolase_SF,superfamily_Ig_E-set,smart_Glyco_hydro_13_sub_cat_dom	-	no_errors	GBE1	HGNC	ENSG00000114480				27	0	0	17	5	22.7273
ZNF654	0	genome.wustl.edu	37	3	88189082	88189082	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	3	88189082	88189082	C	T	SNP	ZNF654	ENST00000309495	human	ensembl	74_37	+1	known	missense	c.622	p.R208W	0.481	smart_Znf_C2H2-like	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF654	HGNC	ENSG00000175105				58	0	0	29	6	17.1429
RAD18	0	genome.wustl.edu	37	3	8977591	8977591	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	3	8977591	8977591	A	G	SNP	RAD18	ENST00000264926	human	ensembl	74_37	-1	known	missense	c.853	p.Y285H	1.000	NULL	pfam_SAP_dom,pfam_Znf_C3HC4_RING-type,smart_Znf_RING,smart_Znf_Rad18_put,smart_SAP_dom,pfscan_Znf_RING,pfscan_SAP_dom	-	no_errors	RAD18	HGNC	ENSG00000070950				205	0	0	145	11	7.05128
SRGAP3	0	genome.wustl.edu	37	3	9027593	9027593	+	Silent	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	3	9027593	9027593	C	T	SNP	SRGAP3	ENST00000383836	human	ensembl	74_37	-1	known	silent	c.2910	p.T970	0.431	NULL	pfam_RhoGAP_dom,pfam_FCH_dom,pfam_SH3_domain,pfam_SH3_2,superfamily_Rho_GTPase_activation_prot,superfamily_SH3_domain,smart_FCH_dom,smart_RhoGAP_dom,smart_SH3_domain,pfscan_FCH_dom,pfscan_SH3_domain,pfscan_RhoGAP_dom	-	no_errors	SRGAP3	HGNC	ENSG00000196220				99	0	0	68	21	23.5955
EPHA6	0	genome.wustl.edu	37	3	96706732	96706732	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	3	96706732	96706732	C	T	SNP	EPHA6	ENST00000389672	human	ensembl	74_37	+1	known	missense	c.1009	p.R337C	1.000	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt_N_dom,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	EPHA6	HGNC	ENSG00000080224				269	0	0	106	46	30.2632
DCBLD2	0	genome.wustl.edu	37	3	98538224	98538224	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	3	98538224	98538224	G	A	SNP	DCBLD2	ENST00000326857	human	ensembl	74_37	-1	known	silent	c.909	p.I303	0.002	superfamily_Galactose-bd-like,smart_Coagulation_fac_5/8-C_type_dom,pfscan_Coagulation_fac_5/8-C_type_dom	pfam_Coagulation_fac_5/8-C_type_dom,pfam_CUB_dom,pfam_LCCL,superfamily_Galactose-bd-like,superfamily_CUB_dom,superfamily_LCCL,smart_CUB_dom,smart_LCCL,smart_Coagulation_fac_5/8-C_type_dom,pfscan_CUB_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_LCCL	-	no_errors	DCBLD2	HGNC	ENSG00000057019				83	0	0	37	26	41.2698
DCBLD2	0	genome.wustl.edu	37	3	98541118	98541118	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	3	98541118	98541118	T	C	SNP	DCBLD2	ENST00000326857	human	ensembl	74_37	-1	known	missense	c.784	p.I262V	1.000	pfam_LCCL,superfamily_LCCL,smart_LCCL,pfscan_LCCL	pfam_Coagulation_fac_5/8-C_type_dom,pfam_CUB_dom,pfam_LCCL,superfamily_Galactose-bd-like,superfamily_CUB_dom,superfamily_LCCL,smart_CUB_dom,smart_LCCL,smart_Coagulation_fac_5/8-C_type_dom,pfscan_CUB_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_LCCL	-	no_errors	DCBLD2	HGNC	ENSG00000057019				34	0	0	23	5	17.8571
FILIP1L	0	genome.wustl.edu	37	3	99567788	99567788	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	3	99567788	99567788	A	G	SNP	FILIP1L	ENST00000354552	human	ensembl	74_37	-1	known	missense	c.2732	p.V911A	0.976	NULL	pfam_Cortactin-binding_p2_N,superfamily_Prefoldin,prints_Tropomyosin	-	no_errors	FILIP1L	HGNC	ENSG00000168386				392	1	0.254453	172	75	30.3644
CMSS1	0	genome.wustl.edu	37	3	99881157	99881157	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	3	99881157	99881157	C	T	SNP	CMSS1	ENST00000421999	human	ensembl	74_37	+1	known	missense	c.236	p.T79I	1.000	NULL	pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase	-	no_errors	CMSS1	HGNC	ENSG00000184220				112	0	0	61	24	28.2353
TRMT10A	0	genome.wustl.edu	37	4	100477370	100477370	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	4	100477370	100477370	A	G	SNP	TRMT10A	ENST00000273962	human	ensembl	74_37	-1	known	missense	c.428	p.L143S	1.000	pfam_tRNA_m1G_MeTrfase,pirsf_tRNA_MeTfrase_TRM10	pfam_tRNA_m1G_MeTrfase,pirsf_tRNA_MeTfrase_TRM10	-	no_errors	TRMT10A	HGNC	ENSG00000145331				71	0	0	45	15	25
EGF	0	genome.wustl.edu	37	4	110901129	110901129	+	Silent	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	4	110901129	110901129	T	C	SNP	EGF	ENST00000265171	human	ensembl	74_37	+1	known	silent	c.2055	p.G685	0.998	pirsf_Pro-epidermal_GF,pfam_LDLR_classB_rpt,smart_LDLR_classB_rpt,pfscan_LDLR_classB_rpt	pirsf_Pro-epidermal_GF,pfam_LDLR_classB_rpt,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,smart_LDLR_classB_rpt,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom,pfscan_LDLR_classB_rpt	-	no_errors	EGF	HGNC	ENSG00000138798				270	0	0	171	31	15.3465
ALPK1	0	genome.wustl.edu	37	4	113353418	113353418	+	Silent	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	4	113353418	113353418	C	T	SNP	ALPK1	ENST00000177648	human	ensembl	74_37	+1	known	silent	c.2715	p.C905	0.035	NULL	pfam_MHCK_EF2_kinase,superfamily_Kinase-like_dom,smart_MHCK_EF2_kinase,pfscan_MHCK_EF2_kinase	-	no_errors	ALPK1	HGNC	ENSG00000073331				249	1	0.4	159	14	8.09249
NEUROG2	0	genome.wustl.edu	37	4	113436383	113436383	+	Silent	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	4	113436383	113436383	T	C	SNP	NEUROG2	ENST00000313341	human	ensembl	74_37	-1	known	silent	c.249	p.V83	0.001	NULL	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	NEUROG2	HGNC	ENSG00000178403				32	0	0	26	5	16.129
ANK2	0	genome.wustl.edu	37	4	114275746	114275746	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	4	114275746	114275746	G	T	SNP	ANK2	ENST00000357077	human	ensembl	74_37	+1	known	missense	c.5972	p.R1991L	0.975	NULL	pfam_Ankyrin_rpt,pfam_ZU5,pfam_Death_domain,superfamily_Ankyrin_rpt-contain_dom,superfamily_DEATH-like_dom,smart_Ankyrin_rpt,smart_ZU5,smart_Death_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Death_domain,pfscan_ZU5,prints_Ankyrin_rpt	-	no_errors	ANK2	HGNC	ENSG00000145362				307	0	0	155	67	30.1802
ANK2	0	genome.wustl.edu	37	4	114277471	114277471	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	4	114277471	114277471	A	G	SNP	ANK2	ENST00000357077	human	ensembl	74_37	+1	known	missense	c.7697	p.H2566R	0.325	NULL	pfam_Ankyrin_rpt,pfam_ZU5,pfam_Death_domain,superfamily_Ankyrin_rpt-contain_dom,superfamily_DEATH-like_dom,smart_Ankyrin_rpt,smart_ZU5,smart_Death_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Death_domain,pfscan_ZU5,prints_Ankyrin_rpt	-	no_errors	ANK2	HGNC	ENSG00000145362				266	0	0	145	56	27.8607
ANK2	0	genome.wustl.edu	37	4	114277794	114277794	+	Nonsense_Mutation	SNP	A	A	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	4	114277794	114277794	A	T	SNP	ANK2	ENST00000357077	human	ensembl	74_37	+1	known	nonsense	c.8020	p.K2674*	0.002	NULL	pfam_Ankyrin_rpt,pfam_ZU5,pfam_Death_domain,superfamily_Ankyrin_rpt-contain_dom,superfamily_DEATH-like_dom,smart_Ankyrin_rpt,smart_ZU5,smart_Death_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Death_domain,pfscan_ZU5,prints_Ankyrin_rpt	-	no_errors	ANK2	HGNC	ENSG00000145362				176	0	0	82	34	29.3103
USP53	0	genome.wustl.edu	37	4	120192602	120192602	+	Silent	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	4	120192602	120192602	A	G	SNP	USP53	ENST00000274030	human	ensembl	74_37	+1	known	silent	c.1587	p.A529	0.901	NULL	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	-	no_errors	USP53	HGNC	ENSG00000145390				221	0	0	76	36	32.1429
CTBP1	0	genome.wustl.edu	37	4	1222118	1222118	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	4	1222118	1222118	G	A	SNP	CTBP1	ENST00000290921	human	ensembl	74_37	-1	known	missense	c.209	p.A70V	1.000	pfam_D-isomer_2_OHA_DH_cat_dom	pfam_D-isomer_2_OHA_DH_NAD-bd,pfam_D-isomer_2_OHA_DH_cat_dom,pfam_6PGDH_NADP-bd	-	no_errors	CTBP1	HGNC	ENSG00000159692				147	0	0	104	22	17.4603
BBS7	0	genome.wustl.edu	37	4	122749572	122749572	+	Silent	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	4	122749572	122749572	T	C	SNP	BBS7	ENST00000264499	human	ensembl	74_37	-1	known	silent	c.1875	p.L625	1.000	pirsf_Bardet-Biedl_syndrome_7_prot	superfamily_WD40_repeat_dom,pirsf_Bardet-Biedl_syndrome_7_prot	-	no_errors	BBS7	HGNC	ENSG00000138686				189	0	0	155	28	15.3005
KIAA1109	0	genome.wustl.edu	37	4	123095782	123095782	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	4	123095782	123095782	T	C	SNP	KIAA1109	ENST00000264501	human	ensembl	74_37	+1	known	missense	c.268	p.Y90H	1.000	NULL	pfam_Fragile_site-assoc_C	-	no_errors	KIAA1109	HGNC	ENSG00000138688				103	0	0	55	25	31.25
KIAA1109	0	genome.wustl.edu	37	4	123128729	123128729	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	4	123128729	123128729	T	C	SNP	KIAA1109	ENST00000264501	human	ensembl	74_37	+1	known	missense	c.1688	p.I563T	1.000	NULL	pfam_Fragile_site-assoc_C	-	no_errors	KIAA1109	HGNC	ENSG00000138688				126	0	0	103	6	5.50459
KIAA1109	0	genome.wustl.edu	37	4	123193524	123193524	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	4	123193524	123193524	A	T	SNP	KIAA1109	ENST00000264501	human	ensembl	74_37	+1	known	missense	c.8410	p.I2804F	1.000	NULL	pfam_Fragile_site-assoc_C	-	no_errors	KIAA1109	HGNC	ENSG00000138688				96	0	0	42	7	14.2857
KIAA1109	0	genome.wustl.edu	37	4	123202719	123202719	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	4	123202719	123202719	A	G	SNP	KIAA1109	ENST00000264501	human	ensembl	74_37	+1	known	missense	c.8827	p.T2943A	1.000	NULL	pfam_Fragile_site-assoc_C	-	no_errors	KIAA1109	HGNC	ENSG00000138688				98	0	0	55	34	38.2022
KIAA1109	0	genome.wustl.edu	37	4	123271136	123271136	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	4	123271136	123271136	A	G	SNP	KIAA1109	ENST00000264501	human	ensembl	74_37	+1	known	missense	c.13756	p.T4586A	1.000	pfam_Fragile_site-assoc_C	pfam_Fragile_site-assoc_C	-	no_errors	KIAA1109	HGNC	ENSG00000138688				327	0	0	206	29	12.3404
FAT4	0	genome.wustl.edu	37	4	126371136	126371136	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	4	126371136	126371136	T	C	SNP	FAT4	ENST00000394329	human	ensembl	74_37	+1	known	missense	c.8965	p.F2989L	1.000	superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,superfamily_Cadherin-like,superfamily_ConA-like_lec_gl_sf,smart_Cadherin,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT4	HGNC	ENSG00000196159				168	0	0	104	6	5.45455
HSPA4L	0	genome.wustl.edu	37	4	128732617	128732617	+	Silent	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	4	128732617	128732617	T	C	SNP	HSPA4L	ENST00000439123	human	ensembl	74_37	+1	known	silent	c.1497	p.F499	0.990	pfam_Hsp_70_fam	pfam_Hsp_70_fam,pfam_MreB_Mrl,prints_Hsp_70_fam	-	no_errors	HSPA4L	HGNC	ENSG00000164070				111	0	0	53	36	40.4494
PLK4	0	genome.wustl.edu	37	4	128819592	128819592	+	Splice_Site	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	4	128819592	128819592	A	G	SNP	PLK4	ENST00000270861	human	ensembl	74_37	+1	known	splice_site	c.2811-2	e16-2	1.000	-	-	-	no_errors	PLK4	HGNC	ENSG00000142731				61	0	0	36	18	33.3333
PCDH10	0	genome.wustl.edu	37	4	134071447	134071447	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	4	134071447	134071447	G	A	SNP	PCDH10	ENST00000264360	human	ensembl	74_37	+1	known	missense	c.152	p.R51H	1.000	pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH10	HGNC	ENSG00000138650				215	0	0	88	44	33.3333
PCDH10	0	genome.wustl.edu	37	4	134072100	134072100	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	4	134072100	134072100	G	A	SNP	PCDH10	ENST00000264360	human	ensembl	74_37	+1	known	missense	c.805	p.V269M	1.000	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH10	HGNC	ENSG00000138650				209	0	0	88	32	26.6667
PCDH10	0	genome.wustl.edu	37	4	134084157	134084157	+	Silent	SNP	T	T	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	4	134084157	134084157	T	G	SNP	PCDH10	ENST00000264360	human	ensembl	74_37	+1	known	silent	c.2823	p.T941	0.025	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH10	HGNC	ENSG00000138650				202	1	0.492611	97	47	32.6389
UVSSA	0	genome.wustl.edu	37	4	1348909	1348909	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	4	1348909	1348909	T	A	SNP	UVSSA	ENST00000389851	human	ensembl	74_37	+1	known	missense	c.1052	p.F351Y	1.000	NULL	pfam_DUF2043,superfamily_ENTH_VHS	-	no_errors	UVSSA	HGNC	ENSG00000163945				52	0	0	20	13	39.3939
NKX3-2	0	genome.wustl.edu	37	4	13545707	13545707	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	4	13545707	13545707	C	T	SNP	NKX3-2	ENST00000382438	human	ensembl	74_37	-1	known	missense	c.332	p.R111Q	1.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa	-	no_errors	NKX3-2	HGNC	ENSG00000109705				24	0	0	6	4	40
BOD1L1	0	genome.wustl.edu	37	4	13602222	13602222	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	4	13602222	13602222	G	A	SNP	BOD1L1	ENST00000040738	human	ensembl	74_37	-1	known	missense	c.6302	p.T2101I	0.000	NULL	NULL	-	no_errors	BOD1L1	HGNC	ENSG00000038219				73	0	0	14	14	50
UVSSA	0	genome.wustl.edu	37	4	1374770	1374770	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	4	1374770	1374770	C	T	SNP	UVSSA	ENST00000389851	human	ensembl	74_37	+1	known	missense	c.1855	p.R619C	0.169	NULL	pfam_DUF2043,superfamily_ENTH_VHS	-	no_errors	UVSSA	HGNC	ENSG00000163945				87	0	0	47	6	11.3208
PCDH18	0	genome.wustl.edu	37	4	138442824	138442824	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	4	138442824	138442824	T	C	SNP	PCDH18	ENST00000344876	human	ensembl	74_37	-1	known	missense	c.2767	p.R923G	1.000	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH18	HGNC	ENSG00000189184				336	0	0	176	62	26.0504
CCRN4L	0	genome.wustl.edu	37	4	139964348	139964348	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	4	139964348	139964348	C	T	SNP	CCRN4L	ENST00000280614	human	ensembl	74_37	+1	known	missense	c.311	p.P104L	0.996	NULL	pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase	-	no_errors	CCRN4L	HGNC	ENSG00000151014				190	0	0	77	29	27.3585
MGARP	0	genome.wustl.edu	37	4	140189882	140189882	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	4	140189882	140189882	G	C	SNP	MGARP	ENST00000398955	human	ensembl	74_37	-1	known	missense	c.224	p.T75R	0.020	NULL	NULL	-	no_errors	MGARP	HGNC	ENSG00000137463				213	0	0	97	40	29.1971
MAML3	0	genome.wustl.edu	37	4	140640863	140640863	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	4	140640863	140640863	C	T	SNP	MAML3	ENST00000509479	human	ensembl	74_37	-1	known	missense	c.3031	p.V1011M	0.708	NULL	pfam_Neuroggenic_mastermind-like_N	-	no_errors	MAML3	HGNC	ENSG00000196782				39	0	0	17	10	37.037
CLGN	0	genome.wustl.edu	37	4	141317347	141317347	+	Silent	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	4	141317347	141317347	T	C	SNP	CLGN	ENST00000325617	human	ensembl	74_37	-1	known	silent	c.897	p.E299	0.999	pfam_Calret/calnex,superfamily_Calreticulin/calnexin_P_dom	pfam_Calret/calnex,superfamily_ConA-like_lec_gl_sf,superfamily_Calreticulin/calnexin_P_dom,prints_Calret/calnex	-	no_errors	CLGN	HGNC	ENSG00000153132				327	0	0	219	26	10.6122
CLGN	0	genome.wustl.edu	37	4	141323176	141323176	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	4	141323176	141323176	T	C	SNP	CLGN	ENST00000325617	human	ensembl	74_37	-1	known	missense	c.464	p.Y155C	1.000	pfam_Calret/calnex,superfamily_ConA-like_lec_gl_sf,prints_Calret/calnex	pfam_Calret/calnex,superfamily_ConA-like_lec_gl_sf,superfamily_Calreticulin/calnexin_P_dom,prints_Calret/calnex	-	no_errors	CLGN	HGNC	ENSG00000153132				73	0	0	43	16	27.1186
IL15	0	genome.wustl.edu	37	4	142651089	142651089	+	Silent	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	4	142651089	142651089	A	G	SNP	IL15	ENST00000296545	human	ensembl	74_37	+1	known	silent	c.330	p.T110	0.000	pfam_IL-15/IL-21_fam	pfam_IL-15/IL-21_fam,prints_IL-15_mml,prints_IL-15	-	no_errors	IL15	HGNC	ENSG00000164136				201	0	0	125	14	10.0719
USP38	0	genome.wustl.edu	37	4	144135635	144135635	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	4	144135635	144135635	A	G	SNP	USP38	ENST00000307017	human	ensembl	74_37	+1	known	missense	c.2506	p.K836E	0.560	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	-	no_errors	USP38	HGNC	ENSG00000170185				170	0	0	63	26	29.2135
TTC29	0	genome.wustl.edu	37	4	147824752	147824752	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	4	147824752	147824752	C	T	SNP	TTC29	ENST00000398886	human	ensembl	74_37	-1	known	missense	c.608	p.C203Y	1.000	NULL	smart_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC29	HGNC	ENSG00000137473				56	0	0	23	12	34.2857
FHDC1	0	genome.wustl.edu	37	4	153886120	153886120	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	4	153886120	153886120	A	G	SNP	FHDC1	ENST00000260008	human	ensembl	74_37	+1	known	missense	c.1093	p.T365A	1.000	pfam_FH2_Formin,smart_FH2_Formin	pfam_FH2_Formin,smart_FH2_Formin	-	no_errors	FHDC1	HGNC	ENSG00000137460				143	0	0	88	21	19.2661
DCHS2	0	genome.wustl.edu	37	4	155180907	155180907	+	Silent	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	4	155180907	155180907	T	C	SNP	DCHS2	ENST00000357232	human	ensembl	74_37	-1	known	silent	c.5214	p.G1738	0.999	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_HTH_CenpB_DNA-bd_dom,superfamily_Cadherin-like,superfamily_Homeodomain-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	DCHS2	HGNC	ENSG00000197410				95	0	0	50	31	38.2716
DCHS2	0	genome.wustl.edu	37	4	155219676	155219676	+	Silent	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	4	155219676	155219676	A	G	SNP	DCHS2	ENST00000357232	human	ensembl	74_37	-1	known	silent	c.4425	p.S1475	0.837	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_HTH_CenpB_DNA-bd_dom,superfamily_Cadherin-like,superfamily_Homeodomain-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	DCHS2	HGNC	ENSG00000197410				323	0	0	139	58	29.4416
MAP9	0	genome.wustl.edu	37	4	156289783	156289783	+	Silent	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	4	156289783	156289783	T	C	SNP	MAP9	ENST00000311277	human	ensembl	74_37	-1	known	silent	c.663	p.Q221	0.000	NULL	NULL	-	no_errors	MAP9	HGNC	ENSG00000164114				116	0	0	43	18	29.5082
RXFP1	0	genome.wustl.edu	37	4	159568163	159568163	+	Silent	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	4	159568163	159568163	A	G	SNP	RXFP1	ENST00000307765	human	ensembl	74_37	+1	known	silent	c.1566	p.R522	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_Leu-rich_rpt,pfam_LDrepeatLR_classA_rpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_Leu-rich_rpt_typical-subtyp,pfscan_LDrepeatLR_classA_rpt,pfscan_GPCR_Rhodpsn_7TM,prints_Relaxin_rcpt,prints_GPCR_Rhodpsn,prints_Gphrmn_rcpt_fam	-	no_errors	RXFP1	HGNC	ENSG00000171509				105	0	0	79	5	5.95238
ETFDH	0	genome.wustl.edu	37	4	159629557	159629557	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	4	159629557	159629557	C	T	SNP	ETFDH	ENST00000511912	human	ensembl	74_37	+1	known	missense	c.1732	p.R578W	1.000	NULL	pfam_ETFD_OxRdtase,pfam_FAD_bind_dom,pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,prints_Pyridine_nuc-diS_OxRdtase_2	-	no_errors	ETFDH	HGNC	ENSG00000171503				168	0	0	85	38	30.8943
PPID	0	genome.wustl.edu	37	4	159642617	159642617	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	4	159642617	159642617	T	G	SNP	PPID	ENST00000307720	human	ensembl	74_37	-1	known	missense	c.104	p.E35A	1.000	pfam_Cyclophilin-like_PPIase_dom,superfamily_Cyclophilin-like_PPIase_dom,pfscan_Cyclophilin-like_PPIase_dom	pfam_Cyclophilin-like_PPIase_dom,pfam_TPR_1,superfamily_Cyclophilin-like_PPIase_dom,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_Cyclophilin-like_PPIase_dom,prints_Cyclophilin-like_PPIase_dom	-	no_errors	PPID	HGNC	ENSG00000171497				89	0	0	52	3	5.45455
C4orf45	0	genome.wustl.edu	37	4	159836467	159836467	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	4	159836467	159836467	C	T	SNP	C4orf45	ENST00000434826	human	ensembl	74_37	-1	known	missense	c.401	p.R134H	0.875	NULL	NULL	-	no_errors	C4orf45	HGNC	ENSG00000164123				31	0	0	18	8	30.7692
TAPT1	0	genome.wustl.edu	37	4	16165119	16165119	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	4	16165119	16165119	G	A	SNP	TAPT1	ENST00000405303	human	ensembl	74_37	-1	known	nonsense	c.1516	p.Q506*	1.000	NULL	pfam_Membrane_Tatp1/CMV_rcpt	-	no_errors	TAPT1	HGNC	ENSG00000169762				95	0	0	52	26	33.3333
ANXA10	0	genome.wustl.edu	37	4	169013864	169013864	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	4	169013864	169013864	G	A	SNP	ANXA10	ENST00000359299	human	ensembl	74_37	+1	known	missense	c.13	p.D5N	0.994	prints_AnnexinX	pfam_Annexin_repeat,smart_Annexin_repeat,prints_Annexin,prints_AnnexinX	-	no_errors	ANXA10	HGNC	ENSG00000109511				77	0	0	73	6	7.59494
CLCN3	0	genome.wustl.edu	37	4	170611768	170611768	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	4	170611768	170611768	T	C	SNP	CLCN3	ENST00000347613	human	ensembl	74_37	+1	known	missense	c.694	p.F232L	1.000	pfam_Cl-channel_volt-gated,superfamily_Cl-channel_core	pfam_Cl-channel_volt-gated,pfam_CBS_dom,superfamily_Cl-channel_core,smart_CBS_dom,prints_Cl-channel_volt-gated,prints_Cl_channel-3	-	no_errors	CLCN3	HGNC	ENSG00000109572				142	0	0	65	30	31.5789
HMGB2	0	genome.wustl.edu	37	4	174254362	174254362	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	4	174254362	174254362	T	C	SNP	HMGB2	ENST00000296503	human	ensembl	74_37	-1	known	missense	c.154	p.M52V	1.000	pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	-	no_errors	HMGB2	HGNC	ENSG00000164104				213	0	0	137	15	9.86842
HAND2	0	genome.wustl.edu	37	4	174450023	174450023	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	4	174450023	174450023	T	C	SNP	HAND2	ENST00000359562	human	ensembl	74_37	-1	known	missense	c.418	p.T140A	1.000	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	HAND2	HGNC	ENSG00000164107				207	1	0.480769	139	23	14.1975
AGA	0	genome.wustl.edu	37	4	178354503	178354503	+	Splice_Site	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	4	178354503	178354503	T	C	SNP	AGA	ENST00000264595	human	ensembl	74_37	-1	known	splice_site	c.807-2	e8-2	0.996	-	-	-	no_errors	AGA	HGNC	ENSG00000038002				187	0	0	79	46	36.8
TENM3	0	genome.wustl.edu	37	4	183658145	183658145	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	4	183658145	183658145	C	T	SNP	TENM3	ENST00000406950	human	ensembl	74_37	+1	known	missense	c.3152	p.A1051V	1.000	NULL	pfam_Ten_N,pfam_EGF_extracell,superfamily_CarboxyPept-like_regulatory,superfamily_Cyt_c-like_dom,smart_EG-like_dom,pfscan_EG-like_dom,tigrfam_YD,tigrfam_Rhs_assc_core	-	no_errors	TENM3	HGNC	ENSG00000218336				195	1	0.510204	83	39	31.9672
CASP3	0	genome.wustl.edu	37	4	185553055	185553055	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	4	185553055	185553055	C	T	SNP	CASP3	ENST00000308394	human	ensembl	74_37	-1	known	missense	c.347	p.C116Y	1.000	pfam_Pept_C14_caspase,smart_Pept_C14A_p45_core,pfscan_Pept_C14_ICE_p20,prints_Pept_C14A_p45_core	pfam_Pept_C14_caspase,smart_Pept_C14A_p45_core,pfscan_Pept_C14_p10,pfscan_Pept_C14_ICE_p20,prints_Pept_C14A_p45_core	-	no_errors	CASP3	HGNC	ENSG00000164305				270	0	0	181	13	6.70103
SLED1	0	genome.wustl.edu	37	4	185719634	185719634	+	RNA	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	4	185719634	185719634	T	C	SNP	SLED1	ENST00000506741	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RP11-701P16.1	Clone_based_vega_gene	ENSG00000249138				15	0	0	12	6	33.3333
SLC25A4	0	genome.wustl.edu	37	4	186066006	186066006	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	4	186066006	186066006	T	C	SNP	SLC25A4	ENST00000281456	human	ensembl	74_37	+1	known	missense	c.200	p.F67S	1.000	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier,prints_Aden_trnslctor	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier,prints_Mit_carrier,prints_Aden_trnslctor,prints_Mit_uncoupling	-	no_errors	SLC25A4	HGNC	ENSG00000151729				237	1	0.420168	108	48	30.7692
SNX25	0	genome.wustl.edu	37	4	186283815	186283815	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	4	186283815	186283815	A	G	SNP	SNX25	ENST00000264694	human	ensembl	74_37	+1	known	missense	c.2392	p.K798E	1.000	pfam_Sorting_nexin_C	pfam_Phox_assoc,pfam_Sorting_nexin_C,pfam_RGS_dom,pfam_Phox,superfamily_Regulat_G_prot_signal_superfam,superfamily_Phox,smart_PX_assoc_Snx13,smart_Regulat_G_prot_signal_superfam,smart_Phox,pfscan_Phox,pfscan_Phox_assoc,pfscan_Regulat_G_prot_signal_superfam	-	no_errors	SNX25	HGNC	ENSG00000109762				481	0	0	242	110	31.25
UFSP2	0	genome.wustl.edu	37	4	186324686	186324686	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	4	186324686	186324686	A	G	SNP	UFSP2	ENST00000264689	human	ensembl	74_37	-1	known	missense	c.1285	p.Y429H	1.000	pfam_Peptidase_C78_UfSP1/2	pfam_Peptidase_C78_UfSP1/2	-	no_errors	UFSP2	HGNC	ENSG00000109775				159	0	0	83	5	5.68182
TLR3	0	genome.wustl.edu	37	4	187004019	187004019	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	4	187004019	187004019	G	A	SNP	TLR3	ENST00000296795	human	ensembl	74_37	+1	known	silent	c.1179	p.L393	0.739	smart_Leu-rich_rpt_typical-subtyp	pfam_TIR_dom,pfam_Leu-rich_rpt,superfamily_TIR_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_TIR_dom,pfscan_TIR_dom	-	no_errors	TLR3	HGNC	ENSG00000164342				81	0	0	32	17	34.6939
F11	0	genome.wustl.edu	37	4	187192764	187192764	+	Silent	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	4	187192764	187192764	A	G	SNP	F11	ENST00000403665	human	ensembl	74_37	+1	known	silent	c.57	p.E19	0.841	NULL	pfam_Peptidase_S1,pfam_PAN-1_domain,superfamily_Trypsin-like_Pept_dom,smart_Apple,smart_Peptidase_S1,pfscan_Pan_app,pfscan_Peptidase_S1,prints_Apple,prints_Peptidase_S1A	-	no_errors	F11	HGNC	ENSG00000088926				189	0	0	95	42	30.6569
FAT1	0	genome.wustl.edu	37	4	187628543	187628543	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	4	187628543	187628543	G	A	SNP	FAT1	ENST00000441802	human	ensembl	74_37	-1	known	silent	c.2439	p.V813	0.979	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,smart_EG-like_dom,smart_Laminin_G,smart_EGF-like_Ca-bd_dom,prints_Cadherin,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin	-	no_errors	FAT1	HGNC	ENSG00000083857				380	1	0.262467	249	42	14.433
NAT8L	0	genome.wustl.edu	37	4	2065740	2065740	+	Silent	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	4	2065740	2065740	A	G	SNP	NAT8L	ENST00000423729	human	ensembl	74_37	+1	known	silent	c.795	p.R265	1.000	pfam_GNAT_dom,superfamily_Acyl_CoA_acyltransferase,pfscan_GNAT_dom	pfam_GNAT_dom,superfamily_Acyl_CoA_acyltransferase,pfscan_GNAT_dom	-	no_errors	NAT8L	HGNC	ENSG00000185818				50	0	0	27	4	12.9032
GPR125	0	genome.wustl.edu	37	4	22415356	22415356	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	4	22415356	22415356	C	T	SNP	GPR125	ENST00000334304	human	ensembl	74_37	-1	known	missense	c.1891	p.D631N	1.000	NULL	pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_Leu-rich_rpt,pfam_Ig_I-set,pfam_GPCR_2_extracellular_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,pfscan_Ig-like_dom	-	no_errors	GPR125	HGNC	ENSG00000152990				149	0	0	57	32	35.9551
GPR125	0	genome.wustl.edu	37	4	22422524	22422524	+	Silent	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	4	22422524	22422524	C	T	SNP	GPR125	ENST00000334304	human	ensembl	74_37	-1	known	silent	c.1794	p.S598	0.663	NULL	pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_Leu-rich_rpt,pfam_Ig_I-set,pfam_GPCR_2_extracellular_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,pfscan_Ig-like_dom	-	no_errors	GPR125	HGNC	ENSG00000152990				412	0	0	181	83	31.4394
RBPJ	0	genome.wustl.edu	37	4	26426078	26426078	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	4	26426078	26426078	G	A	SNP	RBPJ	ENST00000342295	human	ensembl	74_37	+1	known	nonsense	c.650	p.W217*	1.000	pfam_Beta-trefoil_DNA-bd_dom,superfamily_Beta-trefoil_DNA-bd_dom	pfam_Beta-trefoil_DNA-bd_dom,pfam_LAG1_DNA-bd,pfam_IPT,superfamily_Beta-trefoil_DNA-bd_dom,superfamily_p53-like_TF_DNA-bd,superfamily_Ig_E-set	-	no_errors	RBPJ	HGNC	ENSG00000168214				223	0	0	104	70	40.2299
PCDH7	0	genome.wustl.edu	37	4	30723194	30723194	+	Silent	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	4	30723194	30723194	C	T	SNP	PCDH7	ENST00000543491	human	ensembl	74_37	+1	known	silent	c.150	p.N50	1.000	pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin	pfam_Cadherin,pfam_Protocadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH7	HGNC	ENSG00000169851				57	0	0	25	12	32.4324
HTT	0	genome.wustl.edu	37	4	3234904	3234904	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	4	3234904	3234904	G	A	SNP	HTT	ENST00000355072	human	ensembl	74_37	+1	known	silent	c.8280	p.A2760	0.000	NULL	pfam_Huntingtin_middle-repeat,pfam_HEAT,superfamily_ARM-type_fold,prints_Huntingtin	-	no_errors	HTT	HGNC	ENSG00000197386				219	0	0	118	44	27.1605
RGS12	0	genome.wustl.edu	37	4	3424186	3424186	+	Silent	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	4	3424186	3424186	C	T	SNP	RGS12	ENST00000344733	human	ensembl	74_37	+1	known	silent	c.2922	p.C974	0.014	pfam_Raf-like_ras-bd,smart_Raf-like_ras-bd,pfscan_Raf-like_ras-bd	pfam_Raf-like_ras-bd,pfam_RGS_dom,pfam_PDZ,pfam_GoLoco_motif,superfamily_Regulat_G_prot_signal_superfam,superfamily_PDZ,smart_PDZ,smart_PTB/PI_dom,smart_Regulat_G_prot_signal_superfam,smart_Raf-like_ras-bd,smart_GoLoco_motif,pfscan_GoLoco_motif,pfscan_PDZ,pfscan_PTB/PI_dom,pfscan_Raf-like_ras-bd,pfscan_Regulat_G_prot_signal_superfam,prints_RGS_dom	-	no_errors	RGS12	HGNC	ENSG00000159788				77	0	0	32	11	25.5814
RGS12	0	genome.wustl.edu	37	4	3430399	3430399	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	4	3430399	3430399	A	G	SNP	RGS12	ENST00000344733	human	ensembl	74_37	+1	known	missense	c.3526	p.K1176E	1.000	NULL	pfam_Raf-like_ras-bd,pfam_RGS_dom,pfam_PDZ,pfam_GoLoco_motif,superfamily_Regulat_G_prot_signal_superfam,superfamily_PDZ,smart_PDZ,smart_PTB/PI_dom,smart_Regulat_G_prot_signal_superfam,smart_Raf-like_ras-bd,smart_GoLoco_motif,pfscan_GoLoco_motif,pfscan_PDZ,pfscan_PTB/PI_dom,pfscan_Raf-like_ras-bd,pfscan_Regulat_G_prot_signal_superfam,prints_RGS_dom	-	no_errors	RGS12	HGNC	ENSG00000159788				137	1	0.724638	72	36	33.3333
ADRA2C	0	genome.wustl.edu	37	4	3768793	3768793	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	4	3768793	3768793	A	G	SNP	ADRA2C	ENST00000330055	human	ensembl	74_37	+1	known	missense	c.460	p.T154A	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_ADRA2C_rcpt,prints_GPCR_Rhodpsn,prints_ADR_fam	-	no_errors	ADRA2C	HGNC	ENSG00000184160				75	0	0	28	7	20
TBC1D1	0	genome.wustl.edu	37	4	38016291	38016291	+	Silent	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	4	38016291	38016291	C	T	SNP	TBC1D1	ENST00000261439	human	ensembl	74_37	+1	known	silent	c.579	p.I193	0.623	smart_PTB/PI_dom	pfam_Rab-GTPase-TBC_dom,pfam_DUF3350,pfam_PTB/PI_dom,superfamily_Rab-GTPase-TBC_dom,smart_PTB/PI_dom,smart_Rab-GTPase-TBC_dom,pfscan_PTB/PI_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D1	HGNC	ENSG00000065882				229	0	0	97	46	32.1678
TBC1D1	0	genome.wustl.edu	37	4	38051444	38051444	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	4	38051444	38051444	G	A	SNP	TBC1D1	ENST00000261439	human	ensembl	74_37	+1	known	missense	c.1835	p.R612Q	0.002	NULL	pfam_Rab-GTPase-TBC_dom,pfam_DUF3350,pfam_PTB/PI_dom,superfamily_Rab-GTPase-TBC_dom,smart_PTB/PI_dom,smart_Rab-GTPase-TBC_dom,pfscan_PTB/PI_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D1	HGNC	ENSG00000065882				208	0	0	96	45	31.9149
TBC1D1	0	genome.wustl.edu	37	4	38119751	38119751	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	4	38119751	38119751	C	T	SNP	TBC1D1	ENST00000261439	human	ensembl	74_37	+1	known	missense	c.2900	p.A967V	0.983	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	pfam_Rab-GTPase-TBC_dom,pfam_DUF3350,pfam_PTB/PI_dom,superfamily_Rab-GTPase-TBC_dom,smart_PTB/PI_dom,smart_Rab-GTPase-TBC_dom,pfscan_PTB/PI_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D1	HGNC	ENSG00000065882				420	0	0	328	19	5.4755
RPL9	0	genome.wustl.edu	37	4	39458157	39458157	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	4	39458157	39458157	C	T	SNP	RPL9	ENST00000295955	human	ensembl	74_37	-1	known	missense	c.260	p.G87D	1.000	pfam_Ribosomal_L6_a/b-dom,superfamily_Ribosomal_L6_a/b-dom,pirsf_Ribosomal_L6	pfam_Ribosomal_L6_a/b-dom,superfamily_Ribosomal_L6_a/b-dom,pirsf_Ribosomal_L6	-	no_errors	RPL9	HGNC	ENSG00000163682				77	0	0	57	15	20.8333
LIAS	0	genome.wustl.edu	37	4	39472857	39472857	+	Silent	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	4	39472857	39472857	A	G	SNP	LIAS	ENST00000261434	human	ensembl	74_37	+1	known	silent	c.885	p.A295	0.787	pfam_rSAM,smart_Elp3/MiaB/NifB,pirsf_Lipoyl_synth,tigrfam_Lipoyl_synth	pfam_rSAM,smart_Elp3/MiaB/NifB,pirsf_Lipoyl_synth,tigrfam_Lipoyl_synth	-	no_errors	LIAS	HGNC	ENSG00000121897				158	0	0	81	51	38.6364
UGDH	0	genome.wustl.edu	37	4	39512403	39512403	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	4	39512403	39512403	G	A	SNP	UGDH	ENST00000316423	human	ensembl	74_37	-1	known	missense	c.343	p.R115C	1.000	pfam_UDP-Glc/GDP-Man_DH_N,tigrfam_UDP-Glc/GDP-Man	pfam_UDP-Glc/GDP-Man_DH_N,pfam_UDP-Glc/GDP-Man_DH_C,pfam_UDP-Glc/GDP-Man_DH_dimer,superfamily_UDP-Glc/GDP-Man_DH_C,superfamily_6-PGluconate_DH_C-like,tigrfam_UDP-Glc/GDP-Man	-	no_errors	UGDH	HGNC	ENSG00000109814				233	0	0	116	52	30.9524
CHRNA9	0	genome.wustl.edu	37	4	40356064	40356064	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	4	40356064	40356064	A	G	SNP	CHRNA9	ENST00000310169	human	ensembl	74_37	+1	known	missense	c.967	p.I323V	0.995	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_Nicotinic_acetylcholine_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	CHRNA9	HGNC	ENSG00000174343				507	0	0	334	37	9.97305
OTOP1	0	genome.wustl.edu	37	4	4199372	4199372	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	4	4199372	4199372	T	C	SNP	OTOP1	ENST00000296358	human	ensembl	74_37	-1	known	missense	c.1189	p.T397A	0.979	pfam_Otopetrin	pfam_Otopetrin	-	no_errors	OTOP1	HGNC	ENSG00000163982				165	0	0	86	43	33.3333
ABCA11P	0	genome.wustl.edu	37	4	419967	419967	+	RNA	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	4	419967	419967	A	G	SNP	ABCA11P	ENST00000451020	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	ABCA11P	HGNC	ENSG00000251595				64	0	0	31	14	31.1111
GABRG1	0	genome.wustl.edu	37	4	46053588	46053588	+	Silent	SNP	A	A	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	4	46053588	46053588	A	C	SNP	GABRG1	ENST00000295452	human	ensembl	74_37	-1	known	silent	c.984	p.S328	0.659	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,prints_GABAAa_rcpt,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABBAg_rcpt,prints_GABAA_rcpt,prints_GABBAg1_rcpt,prints_GABAAa_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	GABRG1	HGNC	ENSG00000163285				118	0	0	68	5	6.84932
ATP10D	0	genome.wustl.edu	37	4	47556800	47556800	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	4	47556800	47556800	C	T	SNP	ATP10D	ENST00000273859	human	ensembl	74_37	+1	known	missense	c.1693	p.R565W	0.679	superfamily_HAD-like_dom,tigrfam_ATPase_P-typ_Plipid-transp	pfam_ATPase_P-typ_transduc_dom_A,pfam_HAD-like_dom,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Plipid-transp,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP10D	HGNC	ENSG00000145246				179	0	0	106	41	27.8912
TXK	0	genome.wustl.edu	37	4	48115286	48115286	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	4	48115286	48115286	G	A	SNP	TXK	ENST00000264316	human	ensembl	74_37	-1	known	missense	c.112	p.L38F	0.018	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_SH2,pfam_SH3_domain,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_SH3_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_SH2,pfscan_SH3_domain,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2	-	no_errors	TXK	HGNC	ENSG00000074966				334	0	0	221	24	9.79592
TEC	0	genome.wustl.edu	37	4	48148398	48148398	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	4	48148398	48148398	C	T	SNP	TEC	ENST00000381501	human	ensembl	74_37	-1	known	missense	c.1025	p.R342Q	1.000	superfamily_Kinase-like_dom,pfscan_SH2	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_SH2,pfam_Pleckstrin_homology,pfam_SH3_domain,pfam_Znf_Btk_motif,pfam_SH3_2,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_Pleckstrin_homology,smart_Znf_Btk_motif,smart_SH3_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Pleckstrin_homology,pfscan_SH2,pfscan_SH3_domain,pfscan_Znf_Btk_motif,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH3_domain,prints_SH2,prints_Znf_Btk_motif	-	no_errors	TEC	HGNC	ENSG00000135605				227	0	0	162	10	5.81395
FRYL	0	genome.wustl.edu	37	4	48501614	48501614	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	4	48501614	48501614	G	A	SNP	FRYL	ENST00000358350	human	ensembl	74_37	-1	known	missense	c.8867	p.T2956M	1.000	NULL	superfamily_ARM-type_fold	-	no_errors	FRYL	HGNC	ENSG00000075539				161	0	0	90	46	33.8235
PIGG	0	genome.wustl.edu	37	4	520905	520905	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	4	520905	520905	G	A	SNP	PIGG	ENST00000453061	human	ensembl	74_37	+1	known	missense	c.2147	p.C716Y	1.000	NULL	pfam_Phosphodiest/P_Trfase,superfamily_Alkaline_phosphatase_core	-	no_errors	PIGG	HGNC	ENSG00000174227				82	0	0	48	20	29.4118
LNX1	0	genome.wustl.edu	37	4	54327149	54327149	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	4	54327149	54327149	G	A	SNP	LNX1	ENST00000263925	human	ensembl	74_37	-1	known	silent	c.2112	p.C704	1.000	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_PDZ,superfamily_PDZ,smart_Znf_RING,smart_PDZ,pfscan_PDZ,pfscan_Znf_RING	-	no_errors	LNX1	HGNC	ENSG00000072201				147	0	0	67	46	40.708
KIT	0	genome.wustl.edu	37	4	55592140	55592140	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	4	55592140	55592140	G	A	SNP	KIT	ENST00000288135	human	ensembl	74_37	+1	known	silent	c.1464	p.T488	0.007	pirsf_Tyr_kinase_CSF1/PDGF_rcpt	pirsf_Tyr_kinase_CSF1/PDGF_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	KIT	HGNC	ENSG00000157404				150	0	0	67	24	26.3736
KDR	0	genome.wustl.edu	37	4	55968120	55968120	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	4	55968120	55968120	C	T	SNP	KDR	ENST00000263923	human	ensembl	74_37	-1	known	missense	c.2210	p.C737Y	1.000	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ig_I-set,pfam_Prot_kinase_dom,pfam_Ig_V-set,pfam_Immunoglobulin,pfam_CD80_C2-set,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,prints_VEGFR2_rcpt	-	no_errors	KDR	HGNC	ENSG00000128052				215	0	0	117	7	5.64516
EVC	0	genome.wustl.edu	37	4	5721059	5721059	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	4	5721059	5721059	A	G	SNP	EVC	ENST00000264956	human	ensembl	74_37	+1	known	missense	c.259	p.K87E	0.001	NULL	NULL	-	no_errors	EVC	HGNC	ENSG00000072840				256	1	0.389105	180	18	9.09091
AASDH	0	genome.wustl.edu	37	4	57244456	57244456	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	4	57244456	57244456	T	C	SNP	AASDH	ENST00000205214	human	ensembl	74_37	-1	known	missense	c.526	p.N176D	0.000	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig,pfam_Acyl_carrier_prot-like,superfamily_Quinonprotein_ADH-like_supfam,superfamily_Acyl_carrier_prot-like,smart_PQQ_beta_propeller_repeat,pfscan_Acyl_carrier_prot-like	-	no_errors	AASDH	HGNC	ENSG00000157426				204	0	0	97	34	25.9542
WFS1	0	genome.wustl.edu	37	4	6293722	6293722	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	4	6293722	6293722	A	C	SNP	WFS1	ENST00000226760	human	ensembl	74_37	+1	known	missense	c.710	p.E237A	0.986	NULL	NULL	-	no_errors	WFS1	HGNC	ENSG00000109501				15	0	0	8	5	38.4615
TECRL	0	genome.wustl.edu	37	4	65175608	65175608	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	4	65175608	65175608	A	C	SNP	TECRL	ENST00000381210	human	ensembl	74_37	-1	known	missense	c.593	p.L198R	0.999	NULL	pfam_3-oxo-5_a-steroid_4-DH_C,pfscan_3-oxo-5_a-steroid_4-DH_C	-	no_errors	TECRL	HGNC	ENSG00000205678				163	0	0	82	29	26.1261
PDE6B	0	genome.wustl.edu	37	4	656356	656356	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	4	656356	656356	G	A	SNP	PDE6B	ENST00000496514	human	ensembl	74_37	+1	known	missense	c.1781	p.G594D	0.988	pfam_PDEase_catalytic_dom,smart_HD/PDEase_dom,prints_PDEase	pfam_PDEase_catalytic_dom,pfam_GAF,smart_GAF,smart_HD/PDEase_dom,prints_PDEase	-	no_errors	PDE6B	HGNC	ENSG00000133256				146	0	0	99	6	5.71429
PDE6B	0	genome.wustl.edu	37	4	657603	657603	+	Silent	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	4	657603	657603	C	T	SNP	PDE6B	ENST00000496514	human	ensembl	74_37	+1	known	silent	c.1965	p.H655	0.992	pfam_PDEase_catalytic_dom,smart_HD/PDEase_dom	pfam_PDEase_catalytic_dom,pfam_GAF,smart_GAF,smart_HD/PDEase_dom,prints_PDEase	-	no_errors	PDE6B	HGNC	ENSG00000133256				55	0	0	20	11	35.4839
EPHA5	0	genome.wustl.edu	37	4	66280009	66280009	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	4	66280009	66280009	G	A	SNP	EPHA5	ENST00000273854	human	ensembl	74_37	-1	known	silent	c.1680	p.T560	1.000	superfamily_Fibronectin_type3,pirsf_Tyr_kinase_ephrin_rcpt	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt_N_dom,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,pirsf_Tyr_kinase_ephrin_rcpt,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	EPHA5	HGNC	ENSG00000145242				210	0	0	145	13	8.22785
MFSD7	0	genome.wustl.edu	37	4	678549	678549	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	4	678549	678549	C	T	SNP	MFSD7	ENST00000404286	human	ensembl	74_37	-1	known	missense	c.682	p.A228T	0.004	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	-	no_errors	MFSD7	HGNC	ENSG00000169026				120	0	0	62	30	32.6087
UBA6	0	genome.wustl.edu	37	4	68528931	68528931	+	Silent	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	4	68528931	68528931	T	C	SNP	UBA6	ENST00000322244	human	ensembl	74_37	-1	known	silent	c.963	p.A321	1.000	superfamily_Molybdenum_cofac_synth_MoeB,tigrfam_UBQ-activ_enz_E1	pfam_ThiF_NAD_FAD-bd,pfam_Ub-activating_enz_e1_C,pfam_UBact_repeat,pfam_Ubiquitin-activating_enzyme,superfamily_Molybdenum_cofac_synth_MoeB,prints_UBQ/SUMO-activ_enz_E1-like,tigrfam_UBQ-activ_enz_E1	-	no_errors	UBA6	HGNC	ENSG00000033178				357	1	0.27933	204	88	30.137
ANKRD17	0	genome.wustl.edu	37	4	73950975	73950975	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	4	73950975	73950975	C	T	SNP	ANKRD17	ENST00000358602	human	ensembl	74_37	-1	known	missense	c.7150	p.A2384T	1.000	NULL	pfam_Ankyrin_rpt,pfam_KH_dom_type_1,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_KH_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_KH_dom_type_1,prints_Ankyrin_rpt	-	no_errors	ANKRD17	HGNC	ENSG00000132466				557	0	0	264	116	30.5263
CXCL2	0	genome.wustl.edu	37	4	74964597	74964597	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	4	74964597	74964597	G	A	SNP	CXCL2	ENST00000508487	human	ensembl	74_37	-1	known	missense	c.143	p.T48I	0.534	pfam_Chemokine_IL8-like_dom,superfamily_Chemokine_IL8-like_dom,smart_Chemokine_IL8-like_dom,prints_Chemokine_CXC	pfam_Chemokine_IL8-like_dom,superfamily_Chemokine_IL8-like_dom,smart_Chemokine_IL8-like_dom,prints_Chemokine_CXC	-	no_errors	CXCL2	HGNC	ENSG00000081041				299	0	0	175	74	29.7189
SHROOM3	0	genome.wustl.edu	37	4	77661424	77661424	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	4	77661424	77661424	A	G	SNP	SHROOM3	ENST00000296043	human	ensembl	74_37	+1	known	missense	c.2098	p.K700E	0.001	NULL	pfam_ASD2,pfam_ASD1,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	SHROOM3	HGNC	ENSG00000138771				356	0	0	264	19	6.71378
FRAS1	0	genome.wustl.edu	37	4	79403543	79403543	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	4	79403543	79403543	A	G	SNP	FRAS1	ENST00000264895	human	ensembl	74_37	+1	known	missense	c.8606	p.Y2869C	0.986	pfam_Calx_beta,smart_Calx_beta	pfam_Calx_beta,pfam_VWF_C,superfamily_Growth_fac_rcpt_N_dom,superfamily_Cadherin-like,smart_VWC_out,smart_VWF_C,smart_Furin_repeat,smart_EG-like_dom,smart_Calx_beta,pfscan_VWF_C	-	no_errors	FRAS1	HGNC	ENSG00000138759				414	0	0	219	98	30.9148
ABLIM2	0	genome.wustl.edu	37	4	8029575	8029575	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	4	8029575	8029575	A	G	SNP	ABLIM2	ENST00000447017	human	ensembl	74_37	-1	known	missense	c.1178	p.V393A	0.993	NULL	pfam_Znf_LIM,pfam_Villin_headpiece,superfamily_Villin_headpiece,smart_Znf_LIM,smart_Villin_headpiece,pfscan_Villin_headpiece,pfscan_Znf_LIM	-	no_errors	ABLIM2	HGNC	ENSG00000163995				45	0	0	27	11	28.9474
PRKG2	0	genome.wustl.edu	37	4	82096098	82096098	+	Silent	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	4	82096098	82096098	A	G	SNP	PRKG2	ENST00000264399	human	ensembl	74_37	-1	known	silent	c.477	p.I159	0.998	superfamily_cNMP-bd-like,pirsf_cGMP-dependent_protein_kinase	pfam_Prot_kinase_dom,pfam_cNMP-bd_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_cGMP-dependent_protein_kinase,pfscan_cNMP-bd_dom,pfscan_Prot_kinase_dom,prints_cGMP_dep_kinase,prints_cAMP/cGMP_kin	-	no_errors	PRKG2	HGNC	ENSG00000138669				229	1	0.434783	124	68	35.4167
LIN54	0	genome.wustl.edu	37	4	83891603	83891603	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	4	83891603	83891603	A	G	SNP	LIN54	ENST00000395282	human	ensembl	74_37	-1	known	missense	c.704	p.L235P	1.000	NULL	NULL	-	no_errors	LIN54	HGNC	ENSG00000189308				276	0	0	175	11	5.91398
HPSE	0	genome.wustl.edu	37	4	84222192	84222192	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	4	84222192	84222192	G	A	SNP	HPSE	ENST00000311412	human	ensembl	74_37	-1	known	missense	c.1393	p.R465W	0.955	NULL	pfam_Glyco_hydro_79,superfamily_Glycoside_hydrolase_SF	-	no_errors	HPSE	HGNC	ENSG00000173083				148	0	0	56	28	33.3333
WDFY3	0	genome.wustl.edu	37	4	85611684	85611684	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	4	85611684	85611684	T	A	SNP	WDFY3	ENST00000295888	human	ensembl	74_37	-1	known	missense	c.9338	p.K3113M	1.000	superfamily_WD40_repeat_dom,pfscan_WD40_repeat_dom	pfam_BEACH_dom,pfam_Znf_FYVE,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_Znf_FYVE_PHD,superfamily_ConA-like_lec_gl_sf,superfamily_Cyclin-like,superfamily_ARM-type_fold,smart_WD40_repeat,smart_Znf_FYVE,pfscan_BEACH_dom,pfscan_Znf_FYVE-rel,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDFY3	HGNC	ENSG00000163625				192	0	0	122	10	7.57576
WDFY3	0	genome.wustl.edu	37	4	85658383	85658383	+	Silent	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	4	85658383	85658383	C	T	SNP	WDFY3	ENST00000295888	human	ensembl	74_37	-1	known	silent	c.6711	p.R2237	1.000	NULL	pfam_BEACH_dom,pfam_Znf_FYVE,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_Znf_FYVE_PHD,superfamily_ConA-like_lec_gl_sf,superfamily_Cyclin-like,superfamily_ARM-type_fold,smart_WD40_repeat,smart_Znf_FYVE,pfscan_BEACH_dom,pfscan_Znf_FYVE-rel,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDFY3	HGNC	ENSG00000163625				168	1	0.591716	99	27	21.4286
WDFY3	0	genome.wustl.edu	37	4	85719168	85719168	+	Silent	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	4	85719168	85719168	A	G	SNP	WDFY3	ENST00000295888	human	ensembl	74_37	-1	known	silent	c.2916	p.S972	1.000	NULL	pfam_BEACH_dom,pfam_Znf_FYVE,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_Znf_FYVE_PHD,superfamily_ConA-like_lec_gl_sf,superfamily_Cyclin-like,superfamily_ARM-type_fold,smart_WD40_repeat,smart_Znf_FYVE,pfscan_BEACH_dom,pfscan_Znf_FYVE-rel,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDFY3	HGNC	ENSG00000163625				230	0	0	117	49	29.5181
KLHL8	0	genome.wustl.edu	37	4	88106783	88106783	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	4	88106783	88106783	G	A	SNP	KLHL8	ENST00000273963	human	ensembl	74_37	-1	known	missense	c.385	p.R129W	0.987	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	pfam_Kelch_1,pfam_BACK,pfam_Kelch_2,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL8	HGNC	ENSG00000145332				107	0	0	42	25	37.3134
UNC5C	0	genome.wustl.edu	37	4	96166239	96166239	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	4	96166239	96166239	G	A	SNP	UNC5C	ENST00000453304	human	ensembl	74_37	-1	known	nonsense	c.832	p.R278*	0.996	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_ZU5,pfam_Death_domain,pfam_Ig_I-set,pfam_Thrombospondin_1_rpt,superfamily_DEATH-like_dom,superfamily_Thrombospondin_1_rpt,smart_Ig_sub,smart_Ig_sub2,smart_Thrombospondin_1_rpt,smart_ZU5,smart_Death_domain,pfscan_Thrombospondin_1_rpt,pfscan_ZU5,pfscan_Ig-like_dom	-	no_errors	UNC5C	HGNC	ENSG00000182168				88	0	0	52	19	26.7606
SLC2A9	0	genome.wustl.edu	37	4	9836622	9836622	+	Silent	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	4	9836622	9836622	C	T	SNP	SLC2A9	ENST00000264784	human	ensembl	74_37	-1	known	silent	c.1302	p.P434	0.001	pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,prints_Sugar/inositol_transpt,tigrfam_Sugar/inositol_transpt	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,prints_Sugar/inositol_transpt,tigrfam_Sugar/inositol_transpt	-	no_errors	SLC2A9	HGNC	ENSG00000109667				119	0	0	53	21	28.3784
IDUA	0	genome.wustl.edu	37	4	996134	996134	+	Silent	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	4	996134	996134	T	C	SNP	IDUA	ENST00000453894	human	ensembl	74_37	+1	known	silent	c.1116	p.N372	0.990	pfam_Glyco_hydro_39,superfamily_Glycoside_hydrolase_SF	pfam_Glyco_hydro_39,superfamily_Glycoside_hydrolase_SF,superfamily_Fibronectin_type3,prints_Glyco_hydro_39	-	no_errors	IDUA	HGNC	ENSG00000127415				53	0	0	28	3	9.67742
ADH5	0	genome.wustl.edu	37	4	99996121	99996121	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	4	99996121	99996121	G	A	SNP	ADH5	ENST00000296412	human	ensembl	74_37	-1	known	missense	c.905	p.A302V	0.843	pfam_ADH_C,tigrfam_ADH_3	pfam_ADH_GroES-like,pfam_ADH_C,superfamily_GroES-like,tigrfam_ADH_3	-	no_errors	ADH5	HGNC	ENSG00000197894				400	1	0.249377	203	82	28.7719
PPIP5K2	0	genome.wustl.edu	37	5	102508909	102508909	+	Silent	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	5	102508909	102508909	T	C	SNP	PPIP5K2	ENST00000358359	human	ensembl	74_37	+1	known	silent	c.2337	p.C779	1.000	pfam_His_Pase_superF_clade-2	pfam_His_Pase_superF_clade-2	-	no_errors	PPIP5K2	HGNC	ENSG00000145725				104	0	0	58	28	32.5581
WDR36	0	genome.wustl.edu	37	5	110448839	110448839	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	5	110448839	110448839	C	T	SNP	WDR36	ENST00000506538	human	ensembl	74_37	+1	known	missense	c.1951	p.L651F	1.000	superfamily_Quinonprotein_ADH-like_supfam,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_SSU_processome_Utp21,pfam_WD40_repeat,superfamily_Quinonprotein_ADH-like_supfam,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR36	HGNC	ENSG00000134987				130	0	0	90	11	10.8911
CAMK4	0	genome.wustl.edu	37	5	110710600	110710600	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	5	110710600	110710600	A	G	SNP	CAMK4	ENST00000282356	human	ensembl	74_37	+1	known	missense	c.293	p.H98R	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	CAMK4	HGNC	ENSG00000152495				89	0	0	47	13	21.6667
APC	0	genome.wustl.edu	37	5	112176653	112176653	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	5	112176653	112176653	C	T	SNP	APC	ENST00000257430	human	ensembl	74_37	+1	known	missense	c.5362	p.R1788C	0.678	NULL	pfam_APC_basic_dom,pfam_EB1-bd,pfam_APC_Cys-rich_rpt,pfam_Armadillo,pfam_APC_dom,pfam_SAMP,pfam_APC_15aa_rpt,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	APC	HGNC	ENSG00000134982				76	0	0	34	18	34.6154
FTMT	0	genome.wustl.edu	37	5	121187847	121187847	+	Silent	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	5	121187847	121187847	C	T	SNP	FTMT	ENST00000321339	human	ensembl	74_37	+1	known	silent	c.189	p.A63	0.000	NULL	pfam_Ferritin_DPS_dom,superfamily_Ferritin-like_SF,pfscan_Ferritin-like_diiron	-	no_errors	FTMT	HGNC	ENSG00000181867				66	0	0	24	8	25
PPIC	0	genome.wustl.edu	37	5	122365031	122365031	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	5	122365031	122365031	A	G	SNP	PPIC	ENST00000306442	human	ensembl	74_37	-1	known	missense	c.200	p.V67A	1.000	pfam_Cyclophilin-like_PPIase_dom,superfamily_Cyclophilin-like_PPIase_dom,pfscan_Cyclophilin-like_PPIase_dom,prints_Cyclophilin-like_PPIase_dom	pfam_Cyclophilin-like_PPIase_dom,superfamily_Cyclophilin-like_PPIase_dom,pfscan_Cyclophilin-like_PPIase_dom,prints_Cyclophilin-like_PPIase_dom	-	no_errors	PPIC	HGNC	ENSG00000168938				217	0	0	124	46	27.0588
CEP120	0	genome.wustl.edu	37	5	122708465	122708465	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	5	122708465	122708465	A	G	SNP	CEP120	ENST00000306467	human	ensembl	74_37	-1	known	missense	c.2360	p.L787P	1.000	NULL	pfam_DUF3668,superfamily_C2_dom	-	no_errors	CEP120	HGNC	ENSG00000168944				35	0	0	21	9	30
CEP120	0	genome.wustl.edu	37	5	122729096	122729096	+	Silent	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	5	122729096	122729096	A	G	SNP	CEP120	ENST00000306467	human	ensembl	74_37	-1	known	silent	c.708	p.N236	0.876	NULL	pfam_DUF3668,superfamily_C2_dom	-	no_errors	CEP120	HGNC	ENSG00000168944				165	0	0	122	17	12.2302
ZNF608	0	genome.wustl.edu	37	5	123984436	123984436	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	5	123984436	123984436	G	A	SNP	ZNF608	ENST00000306315	human	ensembl	74_37	-1	known	silent	c.1641	p.C547	1.000	NULL	NULL	-	no_errors	ZNF608	HGNC	ENSG00000168916				273	0	0	114	62	35.2273
PHAX	0	genome.wustl.edu	37	5	125936659	125936659	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	5	125936659	125936659	C	T	SNP	PHAX	ENST00000297540	human	ensembl	74_37	+1	known	missense	c.5	p.A2V	1.000	NULL	pfam_PHAX_RNA-binding_domain	-	no_errors	PHAX	HGNC	ENSG00000164902				39	0	0	15	4	21.0526
FBN2	0	genome.wustl.edu	37	5	127686661	127686661	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	5	127686661	127686661	T	A	SNP	FBN2	ENST00000262464	human	ensembl	74_37	-1	known	missense	c.2711	p.D904V	1.000	pirsf_FBN,superfamily_TB_dom	pirsf_FBN,pfam_EGF-like_Ca-bd_dom,pfam_EG-like_dom,pfam_TB_dom,superfamily_TB_dom,superfamily_Cadherin-like,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom	-	no_errors	FBN2	HGNC	ENSG00000138829				135	0	0	69	20	22.4719
DDX46	0	genome.wustl.edu	37	5	134099624	134099624	+	Silent	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	5	134099624	134099624	T	C	SNP	DDX46	ENST00000452510	human	ensembl	74_37	+1	known	silent	c.48	p.G16	0.091	NULL	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX46	HGNC	ENSG00000145833				157	0	0	80	13	13.9785
H2AFY	0	genome.wustl.edu	37	5	134724776	134724776	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	5	134724776	134724776	C	T	SNP	H2AFY	ENST00000511689	human	ensembl	74_37	-1	known	missense	c.8	p.S3N	1.000	smart_Histone_H2A,pirsf_Core_histone_macro-H2A	pfam_Macro_dom,pfam_Histone_core_D,superfamily_Histone-fold,smart_Histone_H2A,smart_Macro_dom,pirsf_Core_histone_macro-H2A,prints_Histone_H2A,pfscan_Macro_dom	-	no_errors	H2AFY	HGNC	ENSG00000113648				114	0	0	66	8	10.8108
DNAH5	0	genome.wustl.edu	37	5	13737440	13737440	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	5	13737440	13737440	G	A	SNP	DNAH5	ENST00000265104	human	ensembl	74_37	-1	known	silent	c.11376	p.A3792	0.001	NULL	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH5	HGNC	ENSG00000039139				322	0	0	153	52	25.3659
BRD8	0	genome.wustl.edu	37	5	137498869	137498869	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	5	137498869	137498869	C	G	SNP	BRD8	ENST00000254900	human	ensembl	74_37	-1	known	missense	c.2037	p.Q679H	1.000	NULL	pfam_Bromodomain,superfamily_Bromodomain,superfamily_Peptidase_M20_dimer,smart_Bromodomain,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BRD8	HGNC	ENSG00000112983				124	0	0	83	12	12.6316
HSPA9	0	genome.wustl.edu	37	5	137892147	137892147	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	5	137892147	137892147	G	A	SNP	HSPA9	ENST00000297185	human	ensembl	74_37	-1	known	silent	c.1956	p.Y652	1.000	pfam_Hsp_70_fam,tigrfam_Chaperone_DnaK	pfam_Hsp_70_fam,pfam_MreB_Mrl,pfam_Carb_kinase_FGGY_C,prints_Hsp_70_fam,tigrfam_Chaperone_DnaK	-	no_errors	HSPA9	HGNC	ENSG00000113013				441	1	0.226244	233	95	28.9634
HSPA9	0	genome.wustl.edu	37	5	137895576	137895576	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	5	137895576	137895576	T	C	SNP	HSPA9	ENST00000297185	human	ensembl	74_37	-1	known	missense	c.1387	p.T463A	1.000	pfam_Hsp_70_fam,tigrfam_Chaperone_DnaK	pfam_Hsp_70_fam,pfam_MreB_Mrl,pfam_Carb_kinase_FGGY_C,prints_Hsp_70_fam,tigrfam_Chaperone_DnaK	-	no_errors	HSPA9	HGNC	ENSG00000113013				84	0	0	38	15	28.3019
PURA	0	genome.wustl.edu	37	5	139494690	139494690	+	Silent	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	5	139494690	139494690	T	C	SNP	PURA	ENST00000331327	human	ensembl	74_37	+1	known	silent	c.924	p.A308	1.000	NULL	pfam_PUR_DNA_RNA-bd,smart_PUR_DNA_RNA-bd	-	no_errors	PURA	HGNC	ENSG00000185129				37	0	0	17	10	37.037
PCDHA4	0	genome.wustl.edu	37	5	140188485	140188485	+	Silent	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	5	140188485	140188485	T	C	SNP	PCDHA4	ENST00000530339	human	ensembl	74_37	+1	known	silent	c.1713	p.G571	0.000	superfamily_Cadherin-like	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA4	HGNC	ENSG00000204967				157	1	0.632911	84	29	25.6637
PCDHA5	0	genome.wustl.edu	37	5	140203078	140203078	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	5	140203078	140203078	G	A	SNP	PCDHA5	ENST00000529859	human	ensembl	74_37	+1	known	missense	c.1718	p.G573D	0.000	superfamily_Cadherin-like	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA5	HGNC	ENSG00000204965				190	0	0	118	9	7.08661
PCDHA7	0	genome.wustl.edu	37	5	140216142	140216142	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	5	140216142	140216142	C	T	SNP	PCDHA7	ENST00000525929	human	ensembl	74_37	+1	known	missense	c.2174	p.A725V	0.001	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA7	HGNC	ENSG00000204963				180	0	0	97	52	34.8993
PCDHA8	0	genome.wustl.edu	37	5	140221050	140221050	+	Silent	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	5	140221050	140221050	C	T	SNP	PCDHA8	ENST00000531613	human	ensembl	74_37	+1	known	silent	c.144	p.I48	0.760	pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA8	HGNC	ENSG00000204962				194	0	0	63	39	38.2353
PCDHA8	0	genome.wustl.edu	37	5	140222398	140222398	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	5	140222398	140222398	C	T	SNP	PCDHA8	ENST00000531613	human	ensembl	74_37	+1	known	missense	c.1492	p.R498W	0.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA8	HGNC	ENSG00000204962				252	0	0	110	63	36.4162
PCDHA9	0	genome.wustl.edu	37	5	140229602	140229602	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	5	140229602	140229602	G	A	SNP	PCDHA9	ENST00000532602	human	ensembl	74_37	+1	known	missense	c.1522	p.V508M	0.999	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA9	HGNC	ENSG00000204961				232	0	0	107	49	31.4103
PCDHAC1	0	genome.wustl.edu	37	5	140308328	140308328	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	5	140308328	140308328	G	A	SNP	PCDHAC1	ENST00000253807	human	ensembl	74_37	+1	known	silent	c.1851	p.E617	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHAC1	HGNC	ENSG00000248383				199	0	0	110	17	13.3858
PCDHAC1	0	genome.wustl.edu	37	5	140308672	140308672	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	5	140308672	140308672	T	C	SNP	PCDHAC1	ENST00000253807	human	ensembl	74_37	+1	known	missense	c.2195	p.V732A	0.938	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHAC1	HGNC	ENSG00000248383				186	0	0	92	43	31.8519
PCDHB1	0	genome.wustl.edu	37	5	140431696	140431696	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	5	140431696	140431696	C	T	SNP	PCDHB1	ENST00000306549	human	ensembl	74_37	+1	known	missense	c.641	p.A214V	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB1	HGNC	ENSG00000171815				35	0	0	20	15	42.8571
PCDHB2	0	genome.wustl.edu	37	5	140475265	140475265	+	Silent	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	5	140475265	140475265	T	C	SNP	PCDHB2	ENST00000194155	human	ensembl	74_37	+1	known	silent	c.891	p.S297	0.050	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB2	HGNC	ENSG00000112852				205	0	0	129	15	10.4167
PCDHB8	0	genome.wustl.edu	37	5	140558614	140558614	+	Silent	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	5	140558614	140558614	C	T	SNP	PCDHB8	ENST00000239444	human	ensembl	74_37	+1	known	silent	c.999	p.T333	0.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB8	HGNC	ENSG00000120322				786	0	0	482	74	13.3094
PCDHB11	0	genome.wustl.edu	37	5	140580953	140580953	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	5	140580953	140580953	C	T	SNP	PCDHB11	ENST00000354757	human	ensembl	74_37	+1	known	missense	c.1606	p.R536C	0.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHB11	HGNC	ENSG00000197479				227	0	0	97	45	31.6901
PCDHB14	0	genome.wustl.edu	37	5	140603462	140603462	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	5	140603462	140603462	C	T	SNP	PCDHB14	ENST00000239449	human	ensembl	74_37	+1	known	missense	c.385	p.H129Y	1.000	superfamily_Cadherin-like	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB14	HGNC	ENSG00000120327				263	0	0	212	13	5.77778
PCDHB18	0	genome.wustl.edu	37	5	140615853	140615853	+	RNA	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	5	140615853	140615853	T	C	SNP	PCDHB18	ENST00000526308	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	PCDHB18	HGNC	ENSG00000146001				124	0	0	55	27	32.9268
PCDHB15	0	genome.wustl.edu	37	5	140626780	140626780	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	5	140626780	140626780	C	T	SNP	PCDHB15	ENST00000231173	human	ensembl	74_37	+1	known	missense	c.1634	p.A545V	0.707	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB15	HGNC	ENSG00000113248				114	0	0	59	9	13.2353
PCDHGA6	0	genome.wustl.edu	37	5	140754314	140754314	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	5	140754314	140754314	C	T	SNP	PCDHGA6	ENST00000517434	human	ensembl	74_37	+1	known	missense	c.664	p.R222C	0.016	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA6	HGNC	ENSG00000253731				34	0	0	12	5	29.4118
PCDHGA7	0	genome.wustl.edu	37	5	140762574	140762574	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	5	140762574	140762574	G	A	SNP	PCDHGA7	ENST00000518325	human	ensembl	74_37	+1	known	silent	c.108	p.S36	0.000	pfam_Cadherin_N,superfamily_Cadherin-like	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA7	HGNC	ENSG00000253537				218	0	0	85	37	30.3279
PCDHGA7	0	genome.wustl.edu	37	5	140763137	140763137	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	5	140763137	140763137	G	A	SNP	PCDHGA7	ENST00000518325	human	ensembl	74_37	+1	known	missense	c.671	p.S224N	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA7	HGNC	ENSG00000253537				42	0	0	18	10	35.7143
PCDHGB4	0	genome.wustl.edu	37	5	140769136	140769136	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	5	140769136	140769136	A	G	SNP	PCDHGB4	ENST00000519479	human	ensembl	74_37	+1	known	missense	c.1685	p.Y562C	1.000	superfamily_Cadherin-like	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGB4	HGNC	ENSG00000253953				79	0	0	52	9	14.7541
PCDHGA8	0	genome.wustl.edu	37	5	140772809	140772809	+	Silent	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	5	140772809	140772809	C	T	SNP	PCDHGA8	ENST00000398604	human	ensembl	74_37	+1	known	silent	c.429	p.N143	0.281	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA8	HGNC	ENSG00000253767				137	0	0	57	38	40
PCDHGB7	0	genome.wustl.edu	37	5	140797939	140797939	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	5	140797939	140797939	A	C	SNP	PCDHGB7	ENST00000398594	human	ensembl	74_37	+1	known	missense	c.513	p.Q171H	0.005	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGB7	HGNC	ENSG00000254122				96	0	0	46	21	31.3433
PCDHGA12	0	genome.wustl.edu	37	5	140811036	140811036	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	5	140811036	140811036	A	G	SNP	PCDHGA12	ENST00000252085	human	ensembl	74_37	+1	known	missense	c.710	p.D237G	1.000	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA12	HGNC	ENSG00000253159				171	0	0	89	9	9.18367
PCDHGA12	0	genome.wustl.edu	37	5	140811779	140811779	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	5	140811779	140811779	G	A	SNP	PCDHGA12	ENST00000252085	human	ensembl	74_37	+1	known	missense	c.1453	p.A485T	0.981	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA12	HGNC	ENSG00000253159				122	0	0	67	33	33
PCDHGA12	0	genome.wustl.edu	37	5	140812627	140812627	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	5	140812627	140812627	C	G	SNP	PCDHGA12	ENST00000252085	human	ensembl	74_37	+1	known	missense	c.2301	p.H767Q	0.009	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA12	HGNC	ENSG00000253159				272	0	0	180	28	13.4615
PCDHGC4	0	genome.wustl.edu	37	5	140867053	140867053	+	Silent	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	5	140867053	140867053	C	T	SNP	PCDHGC4	ENST00000306593	human	ensembl	74_37	+1	known	silent	c.2313	p.G771	0.996	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGC4	HGNC	ENSG00000242419				117	1	0.847458	49	27	35.5263
ARAP3	0	genome.wustl.edu	37	5	141035786	141035786	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	5	141035786	141035786	G	A	SNP	ARAP3	ENST00000239440	human	ensembl	74_37	-1	known	missense	c.3847	p.R1283C	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_RhoGAP_dom,pfam_ArfGAP,pfam_Pleckstrin_homology,pfam_Ras-assoc,pfam_SAM_2,pfam_SAM_type1,superfamily_Rho_GTPase_activation_prot,superfamily_SAM/pointed,smart_SAM,smart_Pleckstrin_homology,smart_ArfGAP,smart_RhoGAP_dom,pfscan_Pleckstrin_homology,pfscan_Ras-assoc,pfscan_SAM,pfscan_ArfGAP,pfscan_RhoGAP_dom,prints_ArfGAP	-	no_errors	ARAP3	HGNC	ENSG00000120318				254	1	0.392157	142	70	33.0189
TRIO	0	genome.wustl.edu	37	5	14399145	14399145	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	5	14399145	14399145	G	T	SNP	TRIO	ENST00000344204	human	ensembl	74_37	+1	known	missense	c.4580	p.G1527V	1.000	smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_DH-domain,pfam_Prot_kinase_dom,pfam_Spectrin_repeat,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ig_I-set,pfam_SH3_domain,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_SH3_domain,superfamily_CRAL-TRIO_dom,superfamily_Capsid/spike_ssDNA_virus,smart_CRAL-TRIO_dom,smart_Spectrin/alpha-actinin,smart_DH-domain,smart_Pleckstrin_homology,smart_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_CRAL-TRIO_dom,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,pfscan_DH-domain	-	no_errors	TRIO	HGNC	ENSG00000038382				226	2	0.877193	139	14	9.15033
SH3RF2	0	genome.wustl.edu	37	5	145442254	145442254	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	5	145442254	145442254	C	A	SNP	SH3RF2	ENST00000359120	human	ensembl	74_37	+1	known	missense	c.2180	p.P727H	1.000	NULL	pfam_SH3_2,pfam_SH3_domain,pfam_Znf_C3HC4_RING-type,superfamily_SH3_domain,smart_Znf_RING,smart_SH3_domain,pfscan_SH3_domain,pfscan_Znf_RING,prints_SH3_domain	-	no_errors	SH3RF2	HGNC	ENSG00000156463				111	0	0	53	23	30.2632
RBM27	0	genome.wustl.edu	37	5	145613207	145613207	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	5	145613207	145613207	C	T	SNP	RBM27	ENST00000265271	human	ensembl	74_37	+1	known	missense	c.1045	p.P349S	0.993	NULL	pfam_PWI_dom,pfam_Znf_CCCH,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBM27	HGNC	ENSG00000091009				135	0	0	60	33	35.4839
RBM27	0	genome.wustl.edu	37	5	145718668	145718668	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	5	145718668	145718668	G	A	SNP	RBM27	ENST00000506502	human	ensembl	74_37	+1	putative	silent	c.2949	p.E983	0.978	NULL	pfam_PWI_dom,pfam_Znf_CCCH,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBM27	HGNC	ENSG00000091009				58	0	0	28	7	20
GPR151	0	genome.wustl.edu	37	5	145894652	145894652	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	5	145894652	145894652	T	C	SNP	GPR151	ENST00000311104	human	ensembl	74_37	-1	known	missense	c.1025	p.N342S	0.069	NULL	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	-	no_errors	GPR151	HGNC	ENSG00000173250				76	0	0	44	16	26.6667
JAKMIP2	0	genome.wustl.edu	37	5	147024501	147024501	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	5	147024501	147024501	C	T	SNP	JAKMIP2	ENST00000265272	human	ensembl	74_37	-1	known	missense	c.995	p.C332Y	1.000	NULL	NULL	-	no_errors	JAKMIP2	HGNC	ENSG00000176049				214	0	0	110	40	26.6667
SH3TC2	0	genome.wustl.edu	37	5	148406227	148406227	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	5	148406227	148406227	C	T	SNP	SH3TC2	ENST00000515425	human	ensembl	74_37	-1	known	nonsense	c.2961	p.W987*	1.000	NULL	pfam_SH3_domain,pfam_TPR_1,superfamily_SH3_domain,smart_SH3_domain,smart_TPR_repeat,pfscan_SH3_domain	-	no_errors	SH3TC2	HGNC	ENSG00000169247				385	0	0	168	75	30.8642
PDE6A	0	genome.wustl.edu	37	5	149265935	149265935	+	Silent	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	5	149265935	149265935	C	T	SNP	PDE6A	ENST00000255266	human	ensembl	74_37	-1	known	silent	c.1731	p.T577	0.036	pfam_PDEase_catalytic_dom,smart_HD/PDEase_dom	pfam_PDEase_catalytic_dom,pfam_GAF,smart_GAF,smart_HD/PDEase_dom,prints_PDEase	-	no_errors	PDE6A	HGNC	ENSG00000132915				85	0	0	44	19	30.1587
PDGFRB	0	genome.wustl.edu	37	5	149513540	149513540	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	5	149513540	149513540	C	T	SNP	PDGFRB	ENST00000520579	human	ensembl	74_37	-1	known	missense	c.697	p.A233T	1.000	NULL	pfam_Immunoglobulin,pfscan_Ig-like_dom	-	no_errors	PDGFRB	HGNC	ENSG00000113721				167	0	0	74	37	33.3333
GLRA1	0	genome.wustl.edu	37	5	151304167	151304167	+	RNA	SNP	T	T	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	5	151304167	151304167	T	A	SNP	GLRA1	ENST00000471351	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.933	-	-	-	no_errors	GLRA1	HGNC	ENSG00000145888				146	0	0	125	19	13.1944
NMUR2	0	genome.wustl.edu	37	5	151784146	151784146	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	5	151784146	151784146	A	C	SNP	NMUR2	ENST00000255262	human	ensembl	74_37	-1	known	missense	c.529	p.F177V	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_NeuromedU_rcpt_2,prints_NeuromedU_rcpt,prints_GPCR_Rhodpsn	-	no_errors	NMUR2	HGNC	ENSG00000132911				205	1	0.485437	98	51	34.2282
HAND1	0	genome.wustl.edu	37	5	153857288	153857288	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	5	153857288	153857288	C	T	SNP	HAND1	ENST00000231121	human	ensembl	74_37	-1	known	missense	c.281	p.R94Q	1.000	superfamily_bHLH_dom,pfscan_bHLH_dom	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	HAND1	HGNC	ENSG00000113196				42	0	0	15	11	42.3077
LARP1	0	genome.wustl.edu	37	5	154179464	154179464	+	Silent	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	5	154179464	154179464	C	T	SNP	LARP1	ENST00000336314	human	ensembl	74_37	+1	known	silent	c.1347	p.T449	1.000	NULL	pfam_Lupus_La_RNA-bd,smart_Lupus_La_RNA-bd,smart_DM15,pfscan_Lupus_La_RNA-bd	-	no_errors	LARP1	HGNC	ENSG00000155506				96	0	0	33	14	29.7872
GEMIN5	0	genome.wustl.edu	37	5	154281007	154281007	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	5	154281007	154281007	G	C	SNP	GEMIN5	ENST00000285873	human	ensembl	74_37	-1	known	missense	c.2906	p.A969G	1.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	GEMIN5	HGNC	ENSG00000082516				177	0	0	101	41	28.8732
PLEKHG4B	0	genome.wustl.edu	37	5	156323	156323	+	Silent	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	5	156323	156323	C	T	SNP	PLEKHG4B	ENST00000283426	human	ensembl	74_37	+1	known	silent	c.1278	p.S426	0.003	NULL	pfam_DH-domain,superfamily_DH-domain,superfamily_CRAL-TRIO_dom,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PLEKHG4B	HGNC	ENSG00000153404				60	0	0	35	6	14.6341
TIMD4	0	genome.wustl.edu	37	5	156375481	156375481	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	5	156375481	156375481	A	G	SNP	TIMD4	ENST00000274532	human	ensembl	74_37	-1	known	missense	c.790	p.S264P	0.000	NULL	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like_dom	-	no_errors	TIMD4	HGNC	ENSG00000145850				38	0	0	34	5	12.8205
HAVCR1	0	genome.wustl.edu	37	5	156479583	156479583	+	Silent	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	5	156479583	156479583	C	T	SNP	HAVCR1	ENST00000425854	human	ensembl	74_37	-1	known	silent	c.462	p.T154	0.000	NULL	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like_dom	-	no_errors	HAVCR1	HGNC	ENSG00000113249				851	2	0.234467	512	132	20.4969
NIPAL4	0	genome.wustl.edu	37	5	156899400	156899400	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	5	156899400	156899400	C	T	SNP	NIPAL4	ENST00000311946	human	ensembl	74_37	+1	known	missense	c.833	p.A278V	1.000	pfam_Mg_trans_NIPA	pfam_Mg_trans_NIPA,pfam_DMT	-	no_errors	NIPAL4	HGNC	ENSG00000172548				359	1	0.277778	192	88	31.4286
TTC1	0	genome.wustl.edu	37	5	159437849	159437849	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	5	159437849	159437849	C	T	SNP	TTC1	ENST00000231238	human	ensembl	74_37	+1	known	missense	c.314	p.S105L	1.000	NULL	pfam_TPR_1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC1	HGNC	ENSG00000113312				56	0	0	19	7	26.9231
PTTG1	0	genome.wustl.edu	37	5	159849801	159849801	+	Silent	SNP	T	T	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	5	159849801	159849801	T	G	SNP	PTTG1	ENST00000352433	human	ensembl	74_37	+1	known	silent	c.177	p.A59	0.004	pfam_Securin_separation_inhibitor	pfam_Securin_separation_inhibitor	-	no_errors	PTTG1	HGNC	ENSG00000164611				264	0	0	151	14	8.48485
GABRG2	0	genome.wustl.edu	37	5	161522510	161522510	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	5	161522510	161522510	C	T	SNP	GABRG2	ENST00000356592	human	ensembl	74_37	+1	known	missense	c.269	p.T90M	1.000	pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,prints_GABBAg_rcpt,prints_GABAAa_rcpt,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABBAg_rcpt,prints_GABAA_rcpt,prints_GABBAg2_rcpt,prints_GABAAa_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	GABRG2	HGNC	ENSG00000113327				64	0	0	30	16	34.7826
MAT2B	0	genome.wustl.edu	37	5	162945385	162945385	+	RNA	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	5	162945385	162945385	T	C	SNP	MAT2B	ENST00000521838	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	MAT2B	HGNC	ENSG00000038274				112	0	0	59	24	28.9157
MYO10	0	genome.wustl.edu	37	5	16668508	16668508	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	5	16668508	16668508	G	A	SNP	MYO10	ENST00000513610	human	ensembl	74_37	-1	known	missense	c.5953	p.R1985C	1.000	pfscan_FERM_domain	pfam_Myosin_head_motor_dom,pfam_MyTH4_dom,pfam_Pleckstrin_homology,pfam_FERM_central,pfam_IQ_motif_EF-hand-BS,pfam_Ras-assoc,superfamily_P-loop_NTPase,superfamily_FERM_central,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_Pleckstrin_homology,smart_MyTH4_dom,smart_Band_41_domain,pfscan_FERM_domain,pfscan_IQ_motif_EF-hand-BS,pfscan_MyTH4_dom,pfscan_Pleckstrin_homology,prints_Myosin_head_motor_dom	-	no_errors	MYO10	HGNC	ENSG00000145555				138	0	0	60	33	35.4839
MYO10	0	genome.wustl.edu	37	5	16670846	16670846	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	5	16670846	16670846	C	T	SNP	MYO10	ENST00000513610	human	ensembl	74_37	-1	known	missense	c.5672	p.R1891Q	1.000	pfam_FERM_central,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain	pfam_Myosin_head_motor_dom,pfam_MyTH4_dom,pfam_Pleckstrin_homology,pfam_FERM_central,pfam_IQ_motif_EF-hand-BS,pfam_Ras-assoc,superfamily_P-loop_NTPase,superfamily_FERM_central,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_Pleckstrin_homology,smart_MyTH4_dom,smart_Band_41_domain,pfscan_FERM_domain,pfscan_IQ_motif_EF-hand-BS,pfscan_MyTH4_dom,pfscan_Pleckstrin_homology,prints_Myosin_head_motor_dom	-	no_errors	MYO10	HGNC	ENSG00000145555				141	0	0	56	22	28.2051
PLEKHG4B	0	genome.wustl.edu	37	5	169705	169705	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	5	169705	169705	C	G	SNP	PLEKHG4B	ENST00000283426	human	ensembl	74_37	+1	known	missense	c.2659	p.H887D	1.000	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_DH-domain	pfam_DH-domain,superfamily_DH-domain,superfamily_CRAL-TRIO_dom,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PLEKHG4B	HGNC	ENSG00000153404				153	0	0	80	45	36
TLX3	0	genome.wustl.edu	37	5	170736691	170736691	+	Silent	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	5	170736691	170736691	C	T	SNP	TLX3	ENST00000296921	human	ensembl	74_37	+1	known	silent	c.322	p.L108	1.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,prints_Homeobox_metazoa,pfscan_Homeobox_dom	-	no_errors	TLX3	HGNC	ENSG00000164438				21	0	0	19	8	29.6296
FBXW11	0	genome.wustl.edu	37	5	171384609	171384609	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	5	171384609	171384609	A	G	SNP	FBXW11	ENST00000265094	human	ensembl	74_37	-1	known	missense	c.139	p.C47R	1.000	NULL	pfam_WD40_repeat,pfam_Beta-TrCP_D,pfam_F-box_dom,superfamily_WD40_repeat_dom,superfamily_F-box_dom,smart_F-box_dom,smart_WD40_repeat,pfscan_F-box_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	FBXW11	HGNC	ENSG00000072803				419	0	0	243	30	10.989
PLEKHG4B	0	genome.wustl.edu	37	5	171406	171406	+	Silent	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	5	171406	171406	C	T	SNP	PLEKHG4B	ENST00000283426	human	ensembl	74_37	+1	known	silent	c.2829	p.Y943	0.998	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_DH-domain	pfam_DH-domain,superfamily_DH-domain,superfamily_CRAL-TRIO_dom,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PLEKHG4B	HGNC	ENSG00000153404				47	0	0	24	8	25
SH3PXD2B	0	genome.wustl.edu	37	5	171765730	171765730	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	5	171765730	171765730	G	A	SNP	SH3PXD2B	ENST00000311601	human	ensembl	74_37	-1	known	silent	c.2379	p.T793	0.001	NULL	pfam_SH3_domain,pfam_SH3_2,pfam_Phox,pfam_SH3-like_bac-type,pfam_DUF1058,superfamily_Phox,superfamily_SH3_domain,smart_Phox,smart_SH3_domain,pfscan_Phox,pfscan_SH3_domain	-	no_errors	SH3PXD2B	HGNC	ENSG00000174705				79	0	0	33	13	28.2609
MSX2	0	genome.wustl.edu	37	5	174156417	174156417	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	5	174156417	174156417	C	T	SNP	MSX2	ENST00000239243	human	ensembl	74_37	+1	known	missense	c.635	p.A212V	1.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa	-	no_errors	MSX2	HGNC	ENSG00000120149				114	1	0.869565	52	4	7.14286
ARL10	0	genome.wustl.edu	37	5	175793505	175793505	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	5	175793505	175793505	G	A	SNP	ARL10	ENST00000310389	human	ensembl	74_37	+1	known	silent	c.306	p.P102	0.996	pfam_Small_GTPase_ARF/SAR,pfam_MIRO-like,superfamily_P-loop_NTPase,smart_Small_GTPase_SAR1,smart_Small_GTPase_ARF,prints_Small_GTPase_ARF/SAR	pfam_Small_GTPase_ARF/SAR,pfam_MIRO-like,superfamily_P-loop_NTPase,smart_Small_GTPase_SAR1,smart_Small_GTPase_ARF,prints_Small_GTPase_ARF/SAR	-	no_errors	ARL10	HGNC	ENSG00000175414				109	0	0	59	14	19.1781
ARL10	0	genome.wustl.edu	37	5	175798761	175798761	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	5	175798761	175798761	C	T	SNP	ARL10	ENST00000310389	human	ensembl	74_37	+1	known	missense	c.598	p.R200W	1.000	pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,smart_Small_GTPase_SAR1,smart_Small_GTPase_ARF	pfam_Small_GTPase_ARF/SAR,pfam_MIRO-like,superfamily_P-loop_NTPase,smart_Small_GTPase_SAR1,smart_Small_GTPase_ARF,prints_Small_GTPase_ARF/SAR	-	no_errors	ARL10	HGNC	ENSG00000175414				262	0	0	109	46	29.6774
RNF44	0	genome.wustl.edu	37	5	175958479	175958479	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	5	175958479	175958479	G	A	SNP	RNF44	ENST00000274811	human	ensembl	74_37	-1	known	silent	c.450	p.C150	1.000	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF44	HGNC	ENSG00000146083				16	0	0	14	5	26.3158
UNC5A	0	genome.wustl.edu	37	5	176306317	176306317	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	5	176306317	176306317	A	G	SNP	UNC5A	ENST00000329542	human	ensembl	74_37	+1	known	missense	c.2191	p.R731G	0.938	NULL	pfam_ZU5,pfam_Death_domain,pfam_Ig_I-set,superfamily_DEATH-like_dom,superfamily_Thrombospondin_1_rpt,smart_Ig_sub,smart_Thrombospondin_1_rpt,smart_ZU5,smart_Death_domain,pfscan_Thrombospondin_1_rpt,pfscan_ZU5,pfscan_Ig-like_dom	-	no_errors	UNC5A	HGNC	ENSG00000113763				279	0	0	169	13	7.14286
NSD1	0	genome.wustl.edu	37	5	176707797	176707797	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	5	176707797	176707797	C	T	SNP	NSD1	ENST00000439151	human	ensembl	74_37	+1	known	missense	c.5854	p.R1952W	1.000	smart_SET_dom,pfscan_SET_dom	pfam_PWWP_dom,pfam_SET_dom,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_PWWP_dom,smart_Znf_PHD,smart_AWS,smart_SET_dom,smart_Post-SET_dom,pfscan_AWS,pfscan_PWWP_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger	-	no_errors	NSD1	HGNC	ENSG00000165671				148	0	0	79	33	29.4643
F12	0	genome.wustl.edu	37	5	176832994	176832994	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	5	176832994	176832994	T	C	SNP	F12	ENST00000253496	human	ensembl	74_37	-1	known	missense	c.184	p.T62A	0.035	pirsf_Coagulation_fac_XIIa/HGFA,pfam_FN_type2_col-bd,superfamily_Kringle-like,smart_FN_type2_col-bd,pfscan_FN_type2_col-bd	pirsf_Coagulation_fac_XIIa/HGFA,pfam_Peptidase_S1,pfam_Kringle,pfam_FN_type2_col-bd,pfam_EG-like_dom,pfam_Fibronectin_type1,superfamily_Trypsin-like_Pept_dom,superfamily_Kringle-like,smart_FN_type2_col-bd,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_Fibronectin_type1,smart_Kringle,smart_Peptidase_S1,prints_Peptidase_S1A,pfscan_EG-like_dom,pfscan_Fibronectin_type1,pfscan_FN_type2_col-bd,pfscan_Kringle,pfscan_Peptidase_S1	-	no_errors	F12	HGNC	ENSG00000131187				336	2	0.591716	139	68	32.8502
FAM193B	0	genome.wustl.edu	37	5	176952098	176952098	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	5	176952098	176952098	G	A	SNP	FAM193B	ENST00000443375	human	ensembl	74_37	-1	known	missense	c.1285	p.R429W	0.996	NULL	NULL	-	no_errors	FAM193B	HGNC	ENSG00000146067				79	0	0	58	21	26.5823
ZNF354B	0	genome.wustl.edu	37	5	178310550	178310550	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	5	178310550	178310550	G	A	SNP	ZNF354B	ENST00000322434	human	ensembl	74_37	+1	known	missense	c.1097	p.S366N	0.001	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF354B	HGNC	ENSG00000178338				165	0	0	122	12	8.95522
ZNF354B	0	genome.wustl.edu	37	5	178311048	178311048	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	5	178311048	178311048	G	A	SNP	ZNF354B	ENST00000322434	human	ensembl	74_37	+1	known	missense	c.1595	p.G532D	0.475	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF354B	HGNC	ENSG00000178338				171	0	0	72	37	33.945
TRIM41	0	genome.wustl.edu	37	5	180651147	180651147	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	5	180651147	180651147	G	A	SNP	TRIM41	ENST00000315073	human	ensembl	74_37	+1	known	missense	c.148	p.G50R	0.971	smart_Znf_RING,pfscan_Znf_RING	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,pfam_DUF3631,superfamily_ConA-like_lec_gl_sf,smart_Znf_RING,smart_Znf_B-box,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	TRIM41	HGNC	ENSG00000146063				77	0	0	40	19	32.2034
LRRC14B	0	genome.wustl.edu	37	5	194870	194870	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	5	194870	194870	T	C	SNP	LRRC14B	ENST00000328278	human	ensembl	74_37	+1	novel	missense	c.947	p.L316P	1.000	NULL	NULL	-	no_errors	LRRC14B	HGNC	ENSG00000185028				44	0	0	35	4	10.2564
NPR3	0	genome.wustl.edu	37	5	32712294	32712294	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	5	32712294	32712294	T	C	SNP	NPR3	ENST00000265074	human	ensembl	74_37	+1	known	missense	c.412	p.Y138H	1.000	pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I,prints_Ntpep_rcpt	pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I,prints_Ntpep_rcpt	-	no_errors	NPR3	HGNC	ENSG00000113389				218	0	0	112	47	29.5597
ADAMTS12	0	genome.wustl.edu	37	5	33596060	33596060	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	5	33596060	33596060	T	C	SNP	ADAMTS12	ENST00000504830	human	ensembl	74_37	-1	known	missense	c.2633	p.H878R	0.818	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS12	HGNC	ENSG00000151388				209	0	0	139	11	7.33333
SLC45A2	0	genome.wustl.edu	37	5	33947401	33947401	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	5	33947401	33947401	G	A	SNP	SLC45A2	ENST00000296589	human	ensembl	74_37	-1	known	missense	c.1235	p.T412M	1.000	superfamily_MFS_dom_general_subst_transpt	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	-	no_errors	SLC45A2	HGNC	ENSG00000164175				296	0	0	135	61	31.1224
SPEF2	0	genome.wustl.edu	37	5	35795817	35795817	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	5	35795817	35795817	T	C	SNP	SPEF2	ENST00000356031	human	ensembl	74_37	+1	known	missense	c.4750	p.F1584L	1.000	NULL	pfam_DUF1042,pfam_Adenylate_kin,pfam_HATC_dom_C,superfamily_P-loop_NTPase,superfamily_CH-domain,pfscan_CH-domain	-	no_errors	SPEF2	HGNC	ENSG00000152582				175	0	0	76	54	41.5385
IRX1	0	genome.wustl.edu	37	5	3600279	3600279	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	5	3600279	3600279	T	G	SNP	IRX1	ENST00000302006	human	ensembl	74_37	+1	known	missense	c.1217	p.L406R	0.997	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,smart_Iroquois_homeo,pfscan_Homeobox_dom	-	no_errors	IRX1	HGNC	ENSG00000170549				64	0	0	31	10	24.3902
RANBP3L	0	genome.wustl.edu	37	5	36257027	36257027	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	5	36257027	36257027	A	G	SNP	RANBP3L	ENST00000515759	human	ensembl	74_37	-1	novel	missense	c.919	p.F307L	0.002	NULL	NULL	-	no_errors	RANBP3L	HGNC	ENSG00000164188				94	0	0	40	24	37.5
NIPBL	0	genome.wustl.edu	37	5	36985832	36985832	+	Silent	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	5	36985832	36985832	T	C	SNP	NIPBL	ENST00000282516	human	ensembl	74_37	+1	known	silent	c.2550	p.S850	1.000	NULL	superfamily_ARM-type_fold	-	no_errors	NIPBL	HGNC	ENSG00000164190				111	0	0	68	5	6.84932
NIPBL	0	genome.wustl.edu	37	5	37059070	37059070	+	Silent	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	5	37059070	37059070	A	G	SNP	NIPBL	ENST00000282516	human	ensembl	74_37	+1	known	silent	c.7488	p.E2496	1.000	NULL	superfamily_ARM-type_fold	-	no_errors	NIPBL	HGNC	ENSG00000164190				218	1	0.456621	111	57	33.9286
LIFR	0	genome.wustl.edu	37	5	38496504	38496504	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	5	38496504	38496504	G	A	SNP	LIFR	ENST00000263409	human	ensembl	74_37	-1	known	missense	c.1865	p.A622V	0.989	superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	LIFR	HGNC	ENSG00000113594				253	0	0	115	43	27.2152
C9	0	genome.wustl.edu	37	5	39331866	39331866	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	5	39331866	39331866	A	G	SNP	C9	ENST00000263408	human	ensembl	74_37	-1	known	missense	c.527	p.F176S	0.973	NULL	pfam_MACPF,pfam_LDrepeatLR_classA_rpt,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,superfamily_LDrepeatLR_classA_rpt,smart_Thrombospondin_1_rpt,smart_LDrepeatLR_classA_rpt,smart_MACPF,prints_MAC_perforin,pfscan_LDrepeatLR_classA_rpt,pfscan_Thrombospondin_1_rpt	-	no_errors	C9	HGNC	ENSG00000113600				315	0	0	171	59	25.6522
DAB2	0	genome.wustl.edu	37	5	39393475	39393475	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	5	39393475	39393475	A	G	SNP	DAB2	ENST00000320816	human	ensembl	74_37	-1	known	missense	c.112	p.Y38H	1.000	NULL	pfam_PTB/PI_dom,smart_PTB/PI_dom,pfscan_PTB/PI_dom	-	no_errors	DAB2	HGNC	ENSG00000153071				254	0	0	187	10	5.07614
C6	0	genome.wustl.edu	37	5	41142990	41142990	+	Silent	SNP	C	C	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	5	41142990	41142990	C	A	SNP	C6	ENST00000263413	human	ensembl	74_37	-1	known	silent	c.2742	p.V914	1.000	smart_FacI_MAC	pfam_MACPF,pfam_Sushi_SCR_CCP,pfam_Thrombospondin_1_rpt,pfam_LDrepeatLR_classA_rpt,pfam_Kazal_dom,superfamily_Sushi_SCR_CCP,superfamily_Thrombospondin_1_rpt,superfamily_LDrepeatLR_classA_rpt,smart_Thrombospondin_1_rpt,smart_LDrepeatLR_classA_rpt,smart_MACPF,smart_Sushi_SCR_CCP,smart_FacI_MAC,prints_MAC_perforin,pfscan_LDrepeatLR_classA_rpt,pfscan_Sushi_SCR_CCP,pfscan_Thrombospondin_1_rpt	-	no_errors	C6	HGNC	ENSG00000039537				175	0	0	118	11	8.52713
NNT	0	genome.wustl.edu	37	5	43656831	43656831	+	Silent	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	5	43656831	43656831	C	T	SNP	NNT	ENST00000264663	human	ensembl	74_37	+1	known	silent	c.2370	p.G790	0.771	pfam_NADH_DH_b	pfam_NADH_DH_b,pfam_AlaDH/PNT_NAD(H)-bd,pfam_AlaDH/PNT_N,tigrfam_NADP_transhyd_a	-	no_errors	NNT	HGNC	ENSG00000112992				157	1	0.632911	75	32	29.9065
SLC9A3	0	genome.wustl.edu	37	5	481730	481730	+	Silent	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	5	481730	481730	C	T	SNP	SLC9A3	ENST00000264938	human	ensembl	74_37	-1	known	silent	c.1467	p.S489	0.154	prints_Na/H_exchanger_3/5,tigrfam_NaH_exchanger	pfam_Cation/H_exchanger,superfamily_Reg_factor_effector_dom,prints_Na/H_exchanger_3/5,prints_NaH_exchanger,tigrfam_NaH_exchanger	-	no_errors	SLC9A3	HGNC	ENSG00000066230				434	0	0	209	137	39.5954
SLC9A3	0	genome.wustl.edu	37	5	484636	484636	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	5	484636	484636	C	T	SNP	SLC9A3	ENST00000264938	human	ensembl	74_37	-1	known	missense	c.931	p.A311T	1.000	pfam_Cation/H_exchanger,prints_Na/H_exchanger_3/5,tigrfam_NaH_exchanger	pfam_Cation/H_exchanger,superfamily_Reg_factor_effector_dom,prints_Na/H_exchanger_3/5,prints_NaH_exchanger,tigrfam_NaH_exchanger	-	no_errors	SLC9A3	HGNC	ENSG00000066230				77	0	0	33	10	23.2558
ADAMTS16	0	genome.wustl.edu	37	5	5239878	5239878	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	5	5239878	5239878	T	C	SNP	ADAMTS16	ENST00000274181	human	ensembl	74_37	+1	known	missense	c.2363	p.V788A	0.722	pfam_ADAM_spacer1	pfam_ADAM_spacer1,pfam_Peptidase_M12B_N,pfam_Peptidase_M12B,pfam_Thrombospondin_1_rpt,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS16	HGNC	ENSG00000145536				272	0	0	141	22	13.4969
CDC20B	0	genome.wustl.edu	37	5	54420721	54420721	+	Silent	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	5	54420721	54420721	A	G	SNP	CDC20B	ENST00000296733	human	ensembl	74_37	-1	known	silent	c.1125	p.S375	0.581	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	CDC20B	HGNC	ENSG00000164287				154	0	0	72	16	18.1818
DEPDC1B	0	genome.wustl.edu	37	5	59893631	59893631	+	Silent	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	5	59893631	59893631	T	C	SNP	DEPDC1B	ENST00000265036	human	ensembl	74_37	-1	known	silent	c.1539	p.A513	0.979	NULL	pfam_DEP_dom,pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_DEP_dom,pfscan_DEP_dom,pfscan_RhoGAP_dom	-	no_errors	DEPDC1B	HGNC	ENSG00000035499				364	0	0	253	15	5.59701
ERCC8	0	genome.wustl.edu	37	5	60198332	60198332	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	5	60198332	60198332	T	C	SNP	ERCC8	ENST00000265038	human	ensembl	74_37	-1	known	missense	c.554	p.H185R	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	ERCC8	HGNC	ENSG00000049167				131	0	0	99	24	19.5122
KIF2A	0	genome.wustl.edu	37	5	61642978	61642978	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	5	61642978	61642978	T	C	SNP	KIF2A	ENST00000407818	human	ensembl	74_37	+1	known	missense	c.86	p.V29A	1.000	NULL	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF2A	HGNC	ENSG00000068796				18	0	0	5	6	54.5455
DIMT1	0	genome.wustl.edu	37	5	61694653	61694653	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	5	61694653	61694653	T	A	SNP	DIMT1	ENST00000199320	human	ensembl	74_37	-1	known	missense	c.296	p.Q99L	1.000	pfam_rRNA_Ade_methylase_transferase,smart_rRNA_Ade_methylase_Trfase_N,tigrfam_rRNA_adenine_dimethylase	pfam_rRNA_Ade_methylase_transferase,smart_rRNA_Ade_methylase_Trfase_N,tigrfam_rRNA_adenine_dimethylase	-	no_errors	DIMT1	HGNC	ENSG00000086189				89	0	0	63	8	11.2676
PPWD1	0	genome.wustl.edu	37	5	64881889	64881889	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	5	64881889	64881889	G	T	SNP	PPWD1	ENST00000261308	human	ensembl	74_37	+1	known	nonsense	c.1678	p.G560*	1.000	pfam_Cyclophilin-like_PPIase_dom,superfamily_Cyclophilin-like_PPIase_dom,pfscan_Cyclophilin-like_PPIase_dom	pfam_Cyclophilin-like_PPIase_dom,pfam_WD40_repeat,superfamily_Cyclophilin-like_PPIase_dom,superfamily_WD40_repeat_dom,smart_WD40_repeat,prints_Cyclophilin-like_PPIase_dom,pfscan_Cyclophilin-like_PPIase_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	PPWD1	HGNC	ENSG00000113593				225	0	0	137	26	15.9509
PPWD1	0	genome.wustl.edu	37	5	64883133	64883133	+	Silent	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	5	64883133	64883133	A	G	SNP	PPWD1	ENST00000261308	human	ensembl	74_37	+1	known	silent	c.1851	p.E617	1.000	pfam_Cyclophilin-like_PPIase_dom,superfamily_Cyclophilin-like_PPIase_dom,prints_Cyclophilin-like_PPIase_dom,pfscan_Cyclophilin-like_PPIase_dom	pfam_Cyclophilin-like_PPIase_dom,pfam_WD40_repeat,superfamily_Cyclophilin-like_PPIase_dom,superfamily_WD40_repeat_dom,smart_WD40_repeat,prints_Cyclophilin-like_PPIase_dom,pfscan_Cyclophilin-like_PPIase_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	PPWD1	HGNC	ENSG00000113593				160	0	0	87	35	28.6885
ERBB2IP	0	genome.wustl.edu	37	5	65340099	65340099	+	Silent	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	5	65340099	65340099	T	C	SNP	ERBB2IP	ENST00000284037	human	ensembl	74_37	+1	known	silent	c.1563	p.H521	0.996	NULL	pfam_Leu-rich_rpt,pfam_PDZ,superfamily_PDZ,smart_Leu-rich_rpt_typical-subtyp,smart_PDZ,pfscan_PDZ	-	no_errors	ERBB2IP	HGNC	ENSG00000112851				131	0	0	65	37	36.2745
NSUN2	0	genome.wustl.edu	37	5	6604762	6604762	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	5	6604762	6604762	T	C	SNP	NSUN2	ENST00000264670	human	ensembl	74_37	-1	known	missense	c.1774	p.N592D	1.000	NULL	pfam_Fmu/NOL1/Nop2p,prints_RCMT,prints_RCMT_NCL1	-	no_errors	NSUN2	HGNC	ENSG00000037474				179	0	0	138	13	8.60927
PAPD7	0	genome.wustl.edu	37	5	6754991	6754991	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	5	6754991	6754991	G	A	SNP	PAPD7	ENST00000230859	human	ensembl	74_37	+1	known	missense	c.1562	p.R521H	1.000	NULL	pfam_PAP_assoc,pfam_Nucleotidyltransferase	-	no_errors	PAPD7	HGNC	ENSG00000112941				85	0	0	46	14	23.3333
PIK3R1	0	genome.wustl.edu	37	5	67576452	67576452	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	5	67576452	67576452	T	C	SNP	PIK3R1	ENST00000396611	human	ensembl	74_37	+1	known	missense	c.731	p.L244S	0.999	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	pfam_SH2,pfam_RhoGAP_dom,pfam_SH3_2,superfamily_Rho_GTPase_activation_prot,superfamily_SH3_domain,superfamily_Guanylate-bd_C,smart_SH3_domain,smart_RhoGAP_dom,smart_SH2,pfscan_SH2,pfscan_SH3_domain,pfscan_RhoGAP_dom,prints_PI3kinase_P85,prints_SH2	-	no_errors	PIK3R1	HGNC	ENSG00000145675				301	0	0	163	72	30.6383
MAP1B	0	genome.wustl.edu	37	5	71491781	71491781	+	Silent	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	5	71491781	71491781	C	T	SNP	MAP1B	ENST00000296755	human	ensembl	74_37	+1	known	silent	c.2599	p.L867	0.001	NULL	pfam_MAP1B_neuraxin	-	no_errors	MAP1B	HGNC	ENSG00000131711				365	0	0	171	81	32.1429
FCHO2	0	genome.wustl.edu	37	5	72313086	72313086	+	Silent	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	5	72313086	72313086	T	C	SNP	FCHO2	ENST00000341845	human	ensembl	74_37	+1	known	silent	c.747	p.S249	1.000	NULL	pfam_Muniscin_C-term_mu_dom,pfam_FCH_dom,smart_FCH_dom,pfscan_FCH_dom	-	no_errors	FCHO2	HGNC	ENSG00000157107				12	0	0	5	2	28.5714
TMEM171	0	genome.wustl.edu	37	5	72427510	72427510	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	5	72427510	72427510	G	A	SNP	TMEM171	ENST00000454765	human	ensembl	74_37	+1	known	missense	c.928	p.A310T	0.000	NULL	NULL	-	no_errors	TMEM171	HGNC	ENSG00000157111				314	0	0	140	55	28.2051
HEXB	0	genome.wustl.edu	37	5	74016518	74016518	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	5	74016518	74016518	G	C	SNP	HEXB	ENST00000261416	human	ensembl	74_37	+1	known	missense	c.1559	p.R520T	0.003	superfamily_Glycoside_hydrolase_SF	pfam_Glyco_hydro_20_cat-core,pfam_Glyco_hydro_20b,superfamily_Glycoside_hydrolase_SF,prints_Beta_hexosaminidase_sua/sub	-	no_errors	HEXB	HGNC	ENSG00000049860				114	0	0	56	24	30
GFM2	0	genome.wustl.edu	37	5	74026118	74026118	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	5	74026118	74026118	G	A	SNP	GFM2	ENST00000296805	human	ensembl	74_37	-1	known	nonsense	c.1693	p.R565*	1.000	pfam_Transl_elong_EFG/EF2_IV,superfamily_Ribosomal_S5_D2-typ_fold,smart_Transl_elong_EFG/EF2_IV	pfam_EF_GTP-bd_dom,pfam_EFG_V,pfam_Transl_elong_EFG/EF2_IV,pfam_Transl_elong_EFTu/EF1A_2,superfamily_P-loop_NTPase,superfamily_Transl_B-barrel,superfamily_EFG_III-V,superfamily_Ribosomal_S5_D2-typ_fold,smart_Transl_elong_EFG/EF2_IV,smart_EFG_V,prints_EF_GTP-bd_dom,tigrfam_Small_GTP-bd_dom	-	no_errors	GFM2	HGNC	ENSG00000164347				152	0	0	67	28	29.4737
POC5	0	genome.wustl.edu	37	5	74981304	74981304	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	5	74981304	74981304	C	T	SNP	POC5	ENST00000428202	human	ensembl	74_37	-1	known	missense	c.1135	p.D379N	0.102	NULL	NULL	-	no_errors	POC5	HGNC	ENSG00000152359				192	1	0.518135	145	10	6.45161
PDE8B	0	genome.wustl.edu	37	5	76714268	76714268	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	5	76714268	76714268	A	G	SNP	PDE8B	ENST00000264917	human	ensembl	74_37	+1	known	missense	c.2126	p.D709G	1.000	pfam_PDEase_catalytic_dom,smart_HD/PDEase_dom	pfam_PDEase_catalytic_dom,pfam_PDEase_PDE8,pfam_Sig_transdc_resp-reg_receiver,pfam_PAS_fold,pfam_PAS_4,pfam_PAS_fold_3,superfamily_PAS,superfamily_CheY-like_superfamily,smart_PAS,smart_HD/PDEase_dom,pfscan_PAS,prints_PDEase,tigrfam_PAS	-	no_errors	PDE8B	HGNC	ENSG00000113231				40	0	0	38	3	7.31707
ADCY2	0	genome.wustl.edu	37	5	7709482	7709482	+	Silent	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	5	7709482	7709482	C	T	SNP	ADCY2	ENST00000338316	human	ensembl	74_37	+1	known	silent	c.1560	p.N520	0.962	pfam_Adenylate_cyclase-like	pfam_A/G_cyclase,pfam_Adenylate_cyclase-like,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY2	HGNC	ENSG00000078295				64	0	0	24	4	14.2857
CMYA5	0	genome.wustl.edu	37	5	79027098	79027098	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	5	79027098	79027098	G	T	SNP	CMYA5	ENST00000446378	human	ensembl	74_37	+1	known	missense	c.2510	p.G837V	0.866	NULL	pfam_Fibronectin_type3,pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_B30.2/SPRY,pfscan_Fibronectin_type3	-	no_errors	CMYA5	HGNC	ENSG00000164309				127	0	0	58	30	34.0909
MSH3	0	genome.wustl.edu	37	5	80074641	80074641	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	5	80074641	80074641	G	A	SNP	MSH3	ENST00000265081	human	ensembl	74_37	+1	known	nonsense	c.2421	p.W807*	1.000	pfam_DNA_mismatch_repair_MutS_core,superfamily_DNA_mismatch_repair_MutS_core,smart_DNA_mismatch_repair_MutS_core	pfam_DNA_mismatch_repair_MutS_C,pfam_DNA_mismatch_repair_MutS_core,pfam_DNA_mmatch_repair_MutS_con_dom,pfam_DNA_mismatch_repair_MutS-lik_N,pfam_DNA_mismatch_repair_MutS_clamp,superfamily_DNA_mismatch_repair_MutS_core,superfamily_P-loop_NTPase,superfamily_DNA_mismatch_repair_MutS_N,superfamily_DNA_mmatch_repair_MutS_con_dom,smart_DNA_mismatch_repair_MutS_core,smart_DNA_mismatch_repair_MutS_C	-	no_errors	MSH3	HGNC	ENSG00000113318				198	0	0	91	36	28.3465
RASGRF2	0	genome.wustl.edu	37	5	80382666	80382666	+	Silent	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	5	80382666	80382666	T	C	SNP	RASGRF2	ENST00000265080	human	ensembl	74_37	+1	known	silent	c.1284	p.D428	1.000	superfamily_DH-domain,smart_DH-domain,pfscan_DH-domain	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,pfam_DH-domain,pfam_Pleckstrin_homology,superfamily_Ras_GEF_dom,superfamily_DH-domain,smart_Pleckstrin_homology,smart_DH-domain,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_DH-domain,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RASGRF2	HGNC	ENSG00000113319				117	0	0	56	5	8.19672
ZCCHC9	0	genome.wustl.edu	37	5	80600735	80600735	+	Silent	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	5	80600735	80600735	A	G	SNP	ZCCHC9	ENST00000254037	human	ensembl	74_37	+1	known	silent	c.159	p.A53	0.199	NULL	pfam_Znf_CCHC,superfamily_Znf_CCHC,smart_Znf_CCHC,pfscan_Znf_CCHC	-	no_errors	ZCCHC9	HGNC	ENSG00000131732				152	0	0	60	25	29.4118
SSBP2	0	genome.wustl.edu	37	5	80762804	80762804	+	Silent	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	5	80762804	80762804	A	G	SNP	SSBP2	ENST00000320672	human	ensembl	74_37	-1	known	silent	c.627	p.P209	1.000	NULL	smart_LisH_dimerisation,pfscan_LisH_dimerisation,prints_SSDP_DNA-bd	-	no_errors	SSBP2	HGNC	ENSG00000145687				161	0	0	60	33	35.4839
LYSMD3	0	genome.wustl.edu	37	5	89815165	89815165	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	5	89815165	89815165	C	T	SNP	LYSMD3	ENST00000315948	human	ensembl	74_37	-1	known	missense	c.392	p.R131H	0.377	NULL	pfam_LysM_dom,smart_LysM_dom	-	no_errors	LYSMD3	HGNC	ENSG00000176018				194	0	0	102	43	29.6552
GPR98	0	genome.wustl.edu	37	5	89948258	89948258	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	5	89948258	89948258	A	G	SNP	GPR98	ENST00000405460	human	ensembl	74_37	+1	known	missense	c.3512	p.E1171G	1.000	NULL	pfam_Calx_beta,pfam_EPTP,pfam_GPCR_2_secretin-like,pfam_GPS_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Gal_Oxase/kelch_b-propeller,smart_Calx_beta,pfscan_EAR,pfscan_GPS_dom,pfscan_GPCR_2-like	-	no_errors	GPR98	HGNC	ENSG00000164199				178	0	0	98	33	25.1908
GPR98	0	genome.wustl.edu	37	5	89979549	89979549	+	Silent	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	5	89979549	89979549	T	C	SNP	GPR98	ENST00000405460	human	ensembl	74_37	+1	known	silent	c.5811	p.P1937	0.282	smart_Calx_beta	pfam_Calx_beta,pfam_EPTP,pfam_GPCR_2_secretin-like,pfam_GPS_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Gal_Oxase/kelch_b-propeller,smart_Calx_beta,pfscan_EAR,pfscan_GPS_dom,pfscan_GPCR_2-like	-	no_errors	GPR98	HGNC	ENSG00000164199				95	0	0	37	16	30.1887
GPR98	0	genome.wustl.edu	37	5	89992933	89992933	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	5	89992933	89992933	A	G	SNP	GPR98	ENST00000405460	human	ensembl	74_37	+1	known	missense	c.8125	p.T2709A	0.996	NULL	pfam_Calx_beta,pfam_EPTP,pfam_GPCR_2_secretin-like,pfam_GPS_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Gal_Oxase/kelch_b-propeller,smart_Calx_beta,pfscan_EAR,pfscan_GPS_dom,pfscan_GPCR_2-like	-	no_errors	GPR98	HGNC	ENSG00000164199				195	0	0	73	45	38.1356
SEMA5A	0	genome.wustl.edu	37	5	9044647	9044647	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	5	9044647	9044647	G	A	SNP	SEMA5A	ENST00000382496	human	ensembl	74_37	-1	known	silent	c.2943	p.L981	0.390	NULL	pfam_Semap_dom,pfam_Thrombospondin_1_rpt,superfamily_Semap_dom,superfamily_Thrombospondin_1_rpt,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_Thrombospondin_1_rpt,pfscan_Semap_dom,pfscan_Thrombospondin_1_rpt	-	no_errors	SEMA5A	HGNC	ENSG00000112902				204	0	0	88	46	34.3284
FAM81B	0	genome.wustl.edu	37	5	94772530	94772530	+	Silent	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	5	94772530	94772530	A	G	SNP	FAM81B	ENST00000283357	human	ensembl	74_37	+1	known	silent	c.813	p.E271	0.182	NULL	NULL	-	no_errors	FAM81B	HGNC	ENSG00000153347				101	1	0.980392	64	19	22.8916
ELL2	0	genome.wustl.edu	37	5	95234064	95234064	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	5	95234064	95234064	G	A	SNP	ELL2	ENST00000237853	human	ensembl	74_37	-1	known	missense	c.1405	p.H469Y	1.000	NULL	pfam_RNA_pol_II_elong_fac_ELL,pfam_Occludin_RNApol2_elong_fac_ELL	-	no_errors	ELL2	HGNC	ENSG00000118985				339	1	0.294118	201	80	28.4698
ELL2	0	genome.wustl.edu	37	5	95249542	95249542	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	5	95249542	95249542	C	T	SNP	ELL2	ENST00000237853	human	ensembl	74_37	-1	known	missense	c.414	p.M138I	1.000	pfam_RNA_pol_II_elong_fac_ELL	pfam_RNA_pol_II_elong_fac_ELL,pfam_Occludin_RNApol2_elong_fac_ELL	-	no_errors	ELL2	HGNC	ENSG00000118985				349	0	0	210	24	10.2564
LNPEP	0	genome.wustl.edu	37	5	96332172	96332172	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	5	96332172	96332172	T	C	SNP	LNPEP	ENST00000231368	human	ensembl	74_37	+1	known	missense	c.1486	p.F496L	1.000	pfam_Peptidase_M1_N	pfam_Peptidase_M1_N,prints_Peptidase_M1_N	-	no_errors	LNPEP	HGNC	ENSG00000113441				91	0	0	59	5	7.8125
SIM1	0	genome.wustl.edu	37	6	100838549	100838549	+	Silent	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	6	100838549	100838549	C	T	SNP	SIM1	ENST00000262901	human	ensembl	74_37	-1	known	silent	c.1989	p.S663	0.893	pfam_SIM_C	pfam_SIM_C,pfam_PAS_fold_3,pfam_PAS_fold,pfam_bHLH_dom,superfamily_PAS,superfamily_bHLH_dom,smart_bHLH_dom,smart_PAS,smart_PAC,pfscan_PAS,pfscan_bHLH_dom	-	no_errors	SIM1	HGNC	ENSG00000112246				325	0	0	172	91	34.6008
HACE1	0	genome.wustl.edu	37	6	105177475	105177475	+	RNA	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	6	105177475	105177475	C	T	SNP	HACE1	ENST00000517995	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	HACE1	HGNC	ENSG00000085382				55	0	0	25	9	26.4706
PREP	0	genome.wustl.edu	37	6	105781355	105781355	+	Silent	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	6	105781355	105781355	A	G	SNP	PREP	ENST00000369110	human	ensembl	74_37	-1	known	silent	c.849	p.I283	0.796	pfam_Pept_S9A_N	pfam_Pept_S9A_N,pfam_Peptidase_S9,prints_Peptidase_S9A	-	no_errors	PREP	HGNC	ENSG00000085377				229	0	0	111	62	35.8382
PRDM1	0	genome.wustl.edu	37	6	106552829	106552829	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	6	106552829	106552829	A	G	SNP	PRDM1	ENST00000369096	human	ensembl	74_37	+1	known	missense	c.794	p.D265G	1.000	pirsf_Znf_PRDM1	pfam_Znf_C2H2,pfam_SET_dom,smart_SET_dom,smart_Znf_C2H2-like,pirsf_Znf_PRDM1,pfscan_SET_dom,pfscan_Znf_C2H2	-	no_errors	PRDM1	HGNC	ENSG00000057657				628	1	0.158983	341	156	31.3883
RTN4IP1	0	genome.wustl.edu	37	6	107076676	107076676	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	6	107076676	107076676	A	G	SNP	RTN4IP1	ENST00000369063	human	ensembl	74_37	-1	known	missense	c.221	p.V74A	1.000	pfam_ADH_GroES-like,superfamily_GroES-like,smart_PKS_ER	pfam_ADH_C,pfam_ADH_GroES-like,superfamily_GroES-like,smart_PKS_ER	-	no_errors	RTN4IP1	HGNC	ENSG00000130347				231	0	0	151	14	8.48485
SCML4	0	genome.wustl.edu	37	6	108066254	108066254	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	6	108066254	108066254	C	T	SNP	SCML4	ENST00000369021	human	ensembl	74_37	-1	known	missense	c.494	p.R165Q	0.995	pfam_DUF3588	pfam_DUF3588	-	no_errors	SCML4	HGNC	ENSG00000146285				101	0	0	33	21	38.8889
PPIL6	0	genome.wustl.edu	37	6	109752425	109752425	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	6	109752425	109752425	T	C	SNP	PPIL6	ENST00000521072	human	ensembl	74_37	-1	known	missense	c.355	p.K119E	0.716	NULL	pfam_Cyclophilin-like_PPIase_dom,superfamily_Cyclophilin-like_PPIase_dom,pfscan_Cyclophilin-like_PPIase_dom,prints_Cyclophilin-like_PPIase_dom	-	no_errors	PPIL6	HGNC	ENSG00000185250				230	0	0	168	10	5.61798
FIG4	0	genome.wustl.edu	37	6	110146437	110146437	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	6	110146437	110146437	A	G	SNP	FIG4	ENST00000230124	human	ensembl	74_37	+1	known	missense	c.2693	p.Y898C	1.000	NULL	pfam_Syja_N,pfscan_Syja_N	-	no_errors	FIG4	HGNC	ENSG00000112367				165	0	0	77	24	23.7624
CDK19	0	genome.wustl.edu	37	6	110935840	110935840	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	6	110935840	110935840	G	A	SNP	CDK19	ENST00000368911	human	ensembl	74_37	-1	known	silent	c.1407	p.S469	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	CDK19	HGNC	ENSG00000155111				128	0	0	82	11	11.828
RPF2	0	genome.wustl.edu	37	6	111320915	111320915	+	Silent	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	6	111320915	111320915	T	C	SNP	RPF2	ENST00000441448	human	ensembl	74_37	+1	known	silent	c.318	p.G106	1.000	pfam_Brix,superfamily_Anticodon-bd,smart_Brix,pfscan_Brix	pfam_Brix,superfamily_Anticodon-bd,smart_Brix,pfscan_Brix	-	no_errors	RPF2	HGNC	ENSG00000197498				124	1	0.8	83	6	6.74157
REV3L	0	genome.wustl.edu	37	6	111695404	111695404	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	6	111695404	111695404	T	A	SNP	REV3L	ENST00000358835	human	ensembl	74_37	-1	known	missense	c.4154	p.N1385I	0.172	superfamily_RNaseH-like_dom	pfam_DNA-dir_DNA_pol_B_multi_dom,pfam_DNA-dir_DNA_pol_B_exonuc,superfamily_RNaseH-like_dom,smart_DNA-dir_DNA_pol_B,prints_DNA-dir_DNA_pol_B	-	no_errors	REV3L	HGNC	ENSG00000009413				186	0	0	93	11	10.5769
TRAF3IP2	0	genome.wustl.edu	37	6	111912880	111912880	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	6	111912880	111912880	C	T	SNP	TRAF3IP2	ENST00000340026	human	ensembl	74_37	-1	known	missense	c.437	p.R146H	0.001	NULL	pfam_SEFIR	-	no_errors	TRAF3IP2	HGNC	ENSG00000056972				105	0	0	66	11	14.2857
LAMA4	0	genome.wustl.edu	37	6	112462562	112462562	+	Silent	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	6	112462562	112462562	T	C	SNP	LAMA4	ENST00000230538	human	ensembl	74_37	-1	known	silent	c.2811	p.E937	0.997	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,pfam_Laminin_I,pfam_Laminin_II,pfam_EGF_laminin,superfamily_ConA-like_lec_gl_sf,superfamily_Focal_adhesion_kin_target_dom,smart_EGF_laminin,smart_EG-like_dom,smart_Laminin_G,pfscan_EGF_laminin,pfscan_Laminin_G	-	no_errors	LAMA4	HGNC	ENSG00000112769				185	0	0	98	41	29.4964
LAMA4	0	genome.wustl.edu	37	6	112528337	112528337	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	6	112528337	112528337	G	A	SNP	LAMA4	ENST00000230538	human	ensembl	74_37	-1	known	missense	c.307	p.R103W	0.122	pfam_EGF_laminin,smart_EGF_laminin,smart_EG-like_dom,pfscan_EGF_laminin	pfam_Laminin_G,pfam_Laminin_I,pfam_Laminin_II,pfam_EGF_laminin,superfamily_ConA-like_lec_gl_sf,superfamily_Focal_adhesion_kin_target_dom,smart_EGF_laminin,smart_EG-like_dom,smart_Laminin_G,pfscan_EGF_laminin,pfscan_Laminin_G	-	no_errors	LAMA4	HGNC	ENSG00000112769				156	0	0	69	33	32.3529
COL10A1	0	genome.wustl.edu	37	6	116442008	116442008	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	6	116442008	116442008	A	G	SNP	COL10A1	ENST00000243222	human	ensembl	74_37	-1	known	missense	c.1271	p.V424A	0.000	NULL	pfam_Collagen,pfam_C1q,superfamily_Tumour_necrosis_fac-like_dom,smart_C1q,pfscan_C1q,prints_C1q	-	no_errors	COL10A1	HGNC	ENSG00000123500				132	0	0	88	5	5.37634
TSPYL1	0	genome.wustl.edu	37	6	116600509	116600509	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	6	116600509	116600509	G	A	SNP	TSPYL1	ENST00000368608	human	ensembl	74_37	-1	known	missense	c.485	p.T162I	0.000	NULL	pfam_NAP_family	-	no_errors	TSPYL1	HGNC	ENSG00000189241				173	1	0.574713	74	40	35.0877
DCBLD1	0	genome.wustl.edu	37	6	117862089	117862089	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	6	117862089	117862089	T	C	SNP	DCBLD1	ENST00000338728	human	ensembl	74_37	+1	known	missense	c.1258	p.S420P	0.936	NULL	pfam_Coagulation_fac_5/8-C_type_dom,pfam_LCCL,pfam_CUB_dom,superfamily_Galactose-bd-like,superfamily_LCCL,superfamily_CUB_dom,smart_CUB_dom,smart_LCCL,smart_Coagulation_fac_5/8-C_type_dom,pfscan_CUB_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_LCCL	-	no_errors	DCBLD1	HGNC	ENSG00000164465				225	0	0	100	48	32.4324
FAM184A	0	genome.wustl.edu	37	6	119285848	119285848	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	6	119285848	119285848	A	G	SNP	FAM184A	ENST00000338891	human	ensembl	74_37	-1	known	missense	c.3122	p.I1041T	1.000	NULL	superfamily_Prefoldin	-	no_errors	FAM184A	HGNC	ENSG00000111879				33	0	0	17	3	15
FAM184A	0	genome.wustl.edu	37	6	119297200	119297200	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	6	119297200	119297200	C	T	SNP	FAM184A	ENST00000338891	human	ensembl	74_37	-1	known	missense	c.2465	p.R822H	1.000	NULL	superfamily_Prefoldin	-	no_errors	FAM184A	HGNC	ENSG00000111879				110	1	0.900901	53	19	26.3889
GJA1	0	genome.wustl.edu	37	6	121768708	121768708	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	6	121768708	121768708	C	T	SNP	GJA1	ENST00000282561	human	ensembl	74_37	+1	known	missense	c.715	p.R239W	1.000	NULL	pfam_Connexin_N,pfam_Connexin_CCC,pfam_Connexin43_C,smart_Connexin_N,prints_Connexin,prints_Connexin43	-	no_errors	GJA1	HGNC	ENSG00000152661				198	0	0	95	31	24.6032
SERINC1	0	genome.wustl.edu	37	6	122768017	122768017	+	Silent	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	6	122768017	122768017	A	G	SNP	SERINC1	ENST00000339697	human	ensembl	74_37	-1	known	silent	c.1128	p.D376	1.000	pfam_TMS_TDE	pfam_TMS_TDE	-	no_errors	SERINC1	HGNC	ENSG00000111897				186	0	0	101	43	29.8611
TRDN	0	genome.wustl.edu	37	6	123892227	123892227	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	6	123892227	123892227	G	A	SNP	TRDN	ENST00000398178	human	ensembl	74_37	-1	known	missense	c.73	p.P25S	0.998	NULL	pfam_Asp-B-hydro/Triadin_dom	-	no_errors	TRDN	HGNC	ENSG00000186439				143	1	0.694444	74	7	8.64198
STL	0	genome.wustl.edu	37	6	125269226	125269226	+	RNA	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	6	125269226	125269226	C	T	SNP	STL	ENST00000439075	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.196	-	-	-	no_errors	RP11-510H23.1	Clone_based_vega_gene	ENSG00000236548				70	0	0	41	7	14.5833
RSPO3	0	genome.wustl.edu	37	6	127469863	127469863	+	Silent	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	6	127469863	127469863	A	G	SNP	RSPO3	ENST00000368317	human	ensembl	74_37	+1	known	silent	c.168	p.S56	1.000	superfamily_Growth_fac_rcpt_N_dom,smart_Furin_repeat	pfam_Thrombospondin_1_rpt,superfamily_Growth_fac_rcpt_N_dom,superfamily_Thrombospondin_1_rpt,smart_Furin_repeat,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	-	no_errors	RSPO3	HGNC	ENSG00000146374				183	0	0	73	30	29.1262
SOGA3	0	genome.wustl.edu	37	6	127836026	127836026	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	6	127836026	127836026	T	C	SNP	SOGA3	ENST00000368268	human	ensembl	74_37	-1	known	missense	c.1268	p.Y423C	0.999	NULL	pfam_SOGA	-	no_errors	SOGA3	HGNC	ENSG00000214338				237	1	0.420168	125	45	26.4706
PTPRK	0	genome.wustl.edu	37	6	128318067	128318067	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	6	128318067	128318067	G	A	SNP	PTPRK	ENST00000368227	human	ensembl	74_37	-1	known	nonsense	c.2782	p.R928*	1.000	pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,pfscan_Tyr_Pase_rcpt/non-rcpt	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_MAM_dom,pfam_Fibronectin_type3,pfam_Ig_I-set,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_MAM_dom,smart_Ig_sub,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_MAM_dom,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like_dom,prints_Tyr_Pase_rcpt/non-rcpt,prints_MAM_dom	-	no_errors	PTPRK	HGNC	ENSG00000152894				23	0	0	9	6	40
PTPRK	0	genome.wustl.edu	37	6	128643450	128643450	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	6	128643450	128643450	A	G	SNP	PTPRK	ENST00000368227	human	ensembl	74_37	-1	known	missense	c.229	p.Y77H	1.000	pfam_MAM_dom,superfamily_ConA-like_lec_gl_sf,smart_MAM_dom,pfscan_MAM_dom,prints_MAM_dom	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_MAM_dom,pfam_Fibronectin_type3,pfam_Ig_I-set,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_MAM_dom,smart_Ig_sub,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_MAM_dom,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like_dom,prints_Tyr_Pase_rcpt/non-rcpt,prints_MAM_dom	-	no_errors	PTPRK	HGNC	ENSG00000152894				267	0	0	139	66	32.1951
LAMA2	0	genome.wustl.edu	37	6	129759812	129759812	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	6	129759812	129759812	G	A	SNP	LAMA2	ENST00000421865	human	ensembl	74_37	+1	known	missense	c.5990	p.G1997D	0.620	NULL	pfam_Laminin_G,pfam_EGF_laminin,pfam_Laminin_N,pfam_Laminin_I,pfam_Laminin_B_type_IV,pfam_Laminin_II,superfamily_ConA-like_lec_gl_sf,superfamily_Galactose-bd-like,superfamily_t-SNARE,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	LAMA2	HGNC	ENSG00000196569				137	0	0	103	6	5.50459
ARG1	0	genome.wustl.edu	37	6	131903792	131903792	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	6	131903792	131903792	C	T	SNP	ARG1	ENST00000356962	human	ensembl	74_37	+1	known	missense	c.521	p.T174I	0.933	pfam_Ureohydrolase,tigrfam_Arginase	pfam_Ureohydrolase,prints_Ureohydrolase,tigrfam_Arginase	-	no_errors	ARG1	HGNC	ENSG00000118520				226	0	0	108	38	26.0274
PHACTR1	0	genome.wustl.edu	37	6	13283685	13283685	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	6	13283685	13283685	G	A	SNP	PHACTR1	ENST00000379335	human	ensembl	74_37	+1	known	missense	c.233	p.R78Q	0.999	pfam_RPEL_repeat,smart_RPEL_repeat,pfscan_RPEL_repeat	pfam_RPEL_repeat,smart_RPEL_repeat,pfscan_RPEL_repeat	-	no_errors	PHACTR1	HGNC	ENSG00000112137				247	1	0.403226	128	66	34.0206
VNN1	0	genome.wustl.edu	37	6	133005526	133005526	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	6	133005526	133005526	A	G	SNP	VNN1	ENST00000367928	human	ensembl	74_37	-1	known	missense	c.1307	p.V436A	1.000	pirsf_Biotinidase_euk	pfam_C-N_Hydrolase,superfamily_C-N_Hydrolase,pirsf_Biotinidase_euk,pfscan_C-N_Hydrolase	-	no_errors	VNN1	HGNC	ENSG00000112299				147	0	0	59	30	33.7079
TBC1D7	0	genome.wustl.edu	37	6	13306708	13306708	+	Silent	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	6	13306708	13306708	A	G	SNP	TBC1D7	ENST00000356436	human	ensembl	74_37	-1	known	silent	c.717	p.A239	0.994	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D7	HGNC	ENSG00000145979				100	0	0	52	13	20
GFOD1	0	genome.wustl.edu	37	6	13365792	13365792	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	6	13365792	13365792	C	T	SNP	GFOD1	ENST00000379287	human	ensembl	74_37	-1	known	missense	c.356	p.G119D	1.000	NULL	pfam_Oxidoreductase_N,pfam_OxRdtase_C	-	no_errors	GFOD1	HGNC	ENSG00000145990				273	0	0	143	11	7.14286
MAP3K5	0	genome.wustl.edu	37	6	136913728	136913728	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	6	136913728	136913728	G	A	SNP	MAP3K5	ENST00000359015	human	ensembl	74_37	-1	known	missense	c.2903	p.P968L	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_SAM/pointed,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	MAP3K5	HGNC	ENSG00000197442				145	0	0	66	36	35.2941
MAP3K5	0	genome.wustl.edu	37	6	136977530	136977530	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	6	136977530	136977530	G	A	SNP	MAP3K5	ENST00000359015	human	ensembl	74_37	-1	known	missense	c.1595	p.P532L	0.983	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_SAM/pointed,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	MAP3K5	HGNC	ENSG00000197442				250	0	0	175	15	7.89474
TNFAIP3	0	genome.wustl.edu	37	6	138200209	138200209	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	6	138200209	138200209	A	G	SNP	TNFAIP3	ENST00000237289	human	ensembl	74_37	+1	known	missense	c.1627	p.T543A	1.000	NULL	pfam_Znf_A20,pfam_OTU,smart_Znf_A20,pfscan_OTU,pfscan_Znf_A20	-	no_errors	TNFAIP3	HGNC	ENSG00000118503				158	0	0	68	28	29.1667
HIVEP2	0	genome.wustl.edu	37	6	143093511	143093511	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	6	143093511	143093511	G	T	SNP	HIVEP2	ENST00000012134	human	ensembl	74_37	-1	known	missense	c.2365	p.L789I	0.000	NULL	pfam_Znf_C2H2,pfam_Znf_C2H2_jaz,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	HIVEP2	HGNC	ENSG00000010818				121	0	0	69	8	10.3896
PEX3	0	genome.wustl.edu	37	6	143793410	143793410	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	6	143793410	143793410	A	G	SNP	PEX3	ENST00000367591	human	ensembl	74_37	+1	known	missense	c.692	p.K231R	0.331	pfam_Peroxin-3	pfam_Peroxin-3	-	no_errors	PEX3	HGNC	ENSG00000034693				144	0	0	78	23	22.7723
STXBP5	0	genome.wustl.edu	37	6	147635760	147635760	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	6	147635760	147635760	G	A	SNP	STXBP5	ENST00000321680	human	ensembl	74_37	+1	known	missense	c.1390	p.D464N	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,prints_Lethal2_giant	pfam_LLGL2,pfam_WD40_repeat,pfam_Lgl_C_dom,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,pfscan_Synaptobrevin,prints_Lethal2_giant	-	no_errors	STXBP5	HGNC	ENSG00000164506				95	0	0	52	5	8.77193
SASH1	0	genome.wustl.edu	37	6	148853986	148853986	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	6	148853986	148853986	A	G	SNP	SASH1	ENST00000367467	human	ensembl	74_37	+1	known	missense	c.1618	p.K540E	1.000	pfam_rSAM/SH3_domain-containing	pfam_rSAM/SH3_domain-containing,pfam_SAM_2,pfam_SAM_type1,pfam_SH3_2,superfamily_SAM/pointed,superfamily_SH3_domain,smart_SH3_domain,smart_SAM,pfscan_SAM	-	no_errors	SASH1	HGNC	ENSG00000111961				204	0	0	129	13	9.15493
ZC3H12D	0	genome.wustl.edu	37	6	149777991	149777991	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	6	149777991	149777991	T	C	SNP	ZC3H12D	ENST00000389942	human	ensembl	74_37	-1	known	missense	c.491	p.Y164C	0.999	pfam_RNase_Zc3h12	pfam_RNase_Zc3h12	-	no_errors	ZC3H12D	HGNC	ENSG00000178199				77	0	0	43	10	18.8679
IYD	0	genome.wustl.edu	37	6	150715265	150715265	+	Silent	SNP	T	T	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	6	150715265	150715265	T	A	SNP	IYD	ENST00000229447	human	ensembl	74_37	+1	known	silent	c.561	p.T187	0.783	pfam_Nitroreductase-like,superfamily_Nitroreductase-like	pfam_Nitroreductase-like,superfamily_Nitroreductase-like	-	no_errors	IYD	HGNC	ENSG00000009765				136	0	0	82	5	5.74713
RMND1	0	genome.wustl.edu	37	6	151766783	151766783	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	6	151766783	151766783	G	A	SNP	RMND1	ENST00000367303	human	ensembl	74_37	-1	known	missense	c.164	p.P55L	0.773	NULL	pfam_DUF155	-	no_errors	RMND1	HGNC	ENSG00000155906				298	0	0	157	59	27.3148
SYNE1	0	genome.wustl.edu	37	6	152469422	152469422	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	6	152469422	152469422	G	A	SNP	SYNE1	ENST00000265368	human	ensembl	74_37	-1	known	missense	c.24734	p.A8245V	0.482	NULL	pfam_Spectrin_repeat,pfam_CH-domain,pfam_KASH,superfamily_CH-domain,superfamily_Calpain_domain_III,superfamily_ABC1_TM_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE1	HGNC	ENSG00000131018				96	0	0	48	25	34.2466
SYNE1	0	genome.wustl.edu	37	6	152557373	152557373	+	Silent	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	6	152557373	152557373	T	C	SNP	SYNE1	ENST00000265368	human	ensembl	74_37	-1	known	silent	c.20265	p.R6755	0.958	superfamily_Calpain_domain_III,superfamily_ABC1_TM_dom,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_CH-domain,pfam_KASH,superfamily_CH-domain,superfamily_Calpain_domain_III,superfamily_ABC1_TM_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE1	HGNC	ENSG00000131018				187	0	0	95	5	5
SYNE1	0	genome.wustl.edu	37	6	152652220	152652220	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	6	152652220	152652220	C	T	SNP	SYNE1	ENST00000265368	human	ensembl	74_37	-1	known	missense	c.13600	p.G4534R	0.064	superfamily_Calpain_domain_III,superfamily_ABC1_TM_dom,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_CH-domain,pfam_KASH,superfamily_CH-domain,superfamily_Calpain_domain_III,superfamily_ABC1_TM_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE1	HGNC	ENSG00000131018				473	0	0	218	83	27.5748
SYNE1	0	genome.wustl.edu	37	6	152718065	152718065	+	Silent	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	6	152718065	152718065	A	G	SNP	SYNE1	ENST00000265368	human	ensembl	74_37	-1	known	silent	c.7401	p.T2467	0.997	superfamily_Calpain_domain_III,superfamily_ABC1_TM_dom,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_CH-domain,pfam_KASH,superfamily_CH-domain,superfamily_Calpain_domain_III,superfamily_ABC1_TM_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE1	HGNC	ENSG00000131018				219	0	0	114	41	26.4516
SYNE1	0	genome.wustl.edu	37	6	152847248	152847248	+	Silent	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	6	152847248	152847248	A	G	SNP	SYNE1	ENST00000265368	human	ensembl	74_37	-1	known	silent	c.192	p.L64	0.576	pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	pfam_Spectrin_repeat,pfam_CH-domain,pfam_KASH,superfamily_CH-domain,superfamily_Calpain_domain_III,superfamily_ABC1_TM_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE1	HGNC	ENSG00000131018				104	0	0	49	22	30.9859
JARID2	0	genome.wustl.edu	37	6	15496925	15496925	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	6	15496925	15496925	C	T	SNP	JARID2	ENST00000341776	human	ensembl	74_37	+1	known	missense	c.1469	p.P490L	0.999	NULL	pfam_JmjC_dom,pfam_ARID/BRIGHT_DNA-bd,pfam_TF_JmjN,pfam_Znf_C5HC2,superfamily_ARID/BRIGHT_DNA-bd,smart_TF_JmjN,smart_ARID/BRIGHT_DNA-bd,smart_JmjC_dom,pfscan_TF_JmjN,pfscan_JmjC_dom,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	JARID2	HGNC	ENSG00000008083				106	0	0	59	13	18.0556
SCAF8	0	genome.wustl.edu	37	6	155154296	155154296	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	6	155154296	155154296	G	T	SNP	SCAF8	ENST00000367186	human	ensembl	74_37	+1	known	missense	c.3781	p.V1261F	1.000	NULL	pfam_RNA_pol_II-bd,pfam_RRM_dom,superfamily_ENTH_VHS,smart_CID_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	SCAF8	HGNC	ENSG00000213079				116	1	0.854701	75	11	12.7907
CLDN20	0	genome.wustl.edu	37	6	155596891	155596891	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	6	155596891	155596891	T	C	SNP	CLDN20	ENST00000367165	human	ensembl	74_37	+1	known	missense	c.38	p.L13P	1.000	pfam_PMP22/EMP/MP20/Claudin	pfam_PMP22/EMP/MP20/Claudin,prints_Claudin	-	no_errors	CLDN20	HGNC	ENSG00000171217				244	0	0	147	18	10.9091
DTNBP1	0	genome.wustl.edu	37	6	15638027	15638027	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	6	15638027	15638027	T	A	SNP	DTNBP1	ENST00000355917	human	ensembl	74_37	-1	known	missense	c.170	p.D57V	1.000	NULL	pfam_Dysbindin,superfamily_Trp_syn_b_sub_like_PLP_eny_SF	-	no_errors	DTNBP1	HGNC	ENSG00000047579				123	0	0	70	9	11.3924
WTAP	0	genome.wustl.edu	37	6	160164712	160164712	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	6	160164712	160164712	G	A	SNP	WTAP	ENST00000358372	human	ensembl	74_37	+1	known	missense	c.161	p.G54D	0.992	NULL	NULL	-	no_errors	WTAP	HGNC	ENSG00000146457				101	0	0	58	7	10.7692
LPAL2	0	genome.wustl.edu	37	6	160903847	160903847	+	RNA	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	6	160903847	160903847	T	C	SNP	LPAL2	ENST00000335388	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	LPAL2	HGNC	ENSG00000213071				274	0	0	180	25	12.1951
LPA	0	genome.wustl.edu	37	6	161032713	161032713	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	6	161032713	161032713	G	A	SNP	LPA	ENST00000316300	human	ensembl	74_37	-1	known	silent	c.2484	p.H828	0.059	pfam_Kringle,superfamily_Kringle-like,smart_Kringle,pfscan_Kringle	pfam_Kringle,pfam_Peptidase_S1,pfam_Peptidase_S1A_nudel,superfamily_Trypsin-like_Pept_dom,superfamily_Kringle-like,smart_Kringle,smart_Peptidase_S1,prints_Peptidase_S1A,pfscan_Kringle,pfscan_Peptidase_S1	-	no_errors	LPA	HGNC	ENSG00000198670				241	0	0	127	53	29.4444
LPA	0	genome.wustl.edu	37	6	161054904	161054904	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	6	161054904	161054904	G	A	SNP	LPA	ENST00000316300	human	ensembl	74_37	-1	known	silent	c.1116	p.H372	0.047	pfam_Kringle,superfamily_Kringle-like,smart_Kringle,pfscan_Kringle	pfam_Kringle,pfam_Peptidase_S1,pfam_Peptidase_S1A_nudel,superfamily_Trypsin-like_Pept_dom,superfamily_Kringle-like,smart_Kringle,smart_Peptidase_S1,prints_Peptidase_S1A,pfscan_Kringle,pfscan_Peptidase_S1	-	no_errors	LPA	HGNC	ENSG00000198670				241	0	0	164	19	10.3825
PLG	0	genome.wustl.edu	37	6	161152266	161152266	+	Splice_Site	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	6	161152266	161152266	T	C	SNP	PLG	ENST00000308192	human	ensembl	74_37	+1	known	splice_site	c.1438+2	e11+2	0.000	-	-	-	no_errors	PLG	HGNC	ENSG00000122194				91	0	0	48	13	21.3115
MYLIP	0	genome.wustl.edu	37	6	16143397	16143397	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	6	16143397	16143397	T	C	SNP	MYLIP	ENST00000356840	human	ensembl	74_37	+1	known	missense	c.611	p.V204A	0.998	pfscan_FERM_domain,prints_Ez/rad/moesin_like	pfam_FERM_N,pfam_FERM_central,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain,pfscan_Znf_RING,prints_Band_41_fam,prints_Ez/rad/moesin_like	-	no_errors	MYLIP	HGNC	ENSG00000007944				229	0	0	171	15	8.06452
MYLIP	0	genome.wustl.edu	37	6	16145537	16145537	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	6	16145537	16145537	G	A	SNP	MYLIP	ENST00000356840	human	ensembl	74_37	+1	known	missense	c.1237	p.A413T	0.122	pfscan_Znf_RING	pfam_FERM_N,pfam_FERM_central,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain,pfscan_Znf_RING,prints_Band_41_fam,prints_Ez/rad/moesin_like	-	no_errors	MYLIP	HGNC	ENSG00000007944				183	0	0	98	37	27.4074
MAP3K4	0	genome.wustl.edu	37	6	161502018	161502018	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	6	161502018	161502018	G	A	SNP	MAP3K4	ENST00000392142	human	ensembl	74_37	+1	known	missense	c.2203	p.E735K	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	MAP3K4	HGNC	ENSG00000085511				72	0	0	55	13	19.1176
MAP3K4	0	genome.wustl.edu	37	6	161527693	161527693	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	6	161527693	161527693	G	A	SNP	MAP3K4	ENST00000392142	human	ensembl	74_37	+1	known	missense	c.4004	p.G1335D	0.552	superfamily_Kinase-like_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	MAP3K4	HGNC	ENSG00000085511				194	0	0	93	57	38
ATXN1	0	genome.wustl.edu	37	6	16328417	16328417	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	6	16328417	16328417	C	T	SNP	ATXN1	ENST00000244769	human	ensembl	74_37	-1	known	missense	c.125	p.G42D	0.795	NULL	pfam_Ataxin-1_HBP1,pfam_Capicua_tscrpt_rep_mod,superfamily_Ataxin-1_HBP1,smart_Ataxin_AXH_dom,pfscan_Ataxin-1_HBP1	-	no_errors	ATXN1	HGNC	ENSG00000124788				232	0	0	140	28	16.6667
MLLT4	0	genome.wustl.edu	37	6	168348992	168348992	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	6	168348992	168348992	G	A	SNP	MLLT4	ENST00000366806	human	ensembl	74_37	+1	known	missense	c.3644	p.R1215K	0.891	NULL	pfam_Ras-assoc,pfam_Dil_domain,pfam_PDZ,pfam_FHA_dom,superfamily_PDZ,superfamily_SMAD_FHA_domain,smart_Ras-assoc,smart_FHA_dom,smart_PDZ,pfscan_Dilute,pfscan_PDZ,pfscan_Ras-assoc	-	no_errors	MLLT4	HGNC	ENSG00000130396				151	0	0	93	11	10.5769
PDCD2	0	genome.wustl.edu	37	6	170889180	170889180	+	Silent	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	6	170889180	170889180	C	T	SNP	PDCD2	ENST00000541970	human	ensembl	74_37	-1	known	silent	c.672	p.E224	1.000	pfam_PDCD2_C	pfam_PDCD2_C,pfam_Znf_MYND,pfscan_Znf_MYND	-	no_errors	PDCD2	HGNC	ENSG00000071994				84	0	0	40	15	27.2727
NUP153	0	genome.wustl.edu	37	6	17626217	17626217	+	Silent	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	6	17626217	17626217	A	G	SNP	NUP153	ENST00000537253	human	ensembl	74_37	-1	known	silent	c.3816	p.G1272	0.777	NULL	pfam_Nucleoporin_Nup153,pfam_Znf_RanBP2,pfam_Retro-transposon_transp_CS,smart_Znf_RanBP2,pfscan_Znf_RanBP2	-	no_errors	NUP153	HGNC	ENSG00000124789				97	0	0	66	4	5.71429
NHLRC1	0	genome.wustl.edu	37	6	18122829	18122829	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	6	18122829	18122829	G	A	SNP	NHLRC1	ENST00000340650	human	ensembl	74_37	-1	known	silent	c.9	p.A3	0.018	NULL	smart_Znf_RING,pfscan_NHL_repeat_subgr,pfscan_Znf_RING	-	no_errors	NHLRC1	HGNC	ENSG00000187566				17	0	0	11	4	26.6667
CDKAL1	0	genome.wustl.edu	37	6	20846385	20846385	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	6	20846385	20846385	G	A	SNP	CDKAL1	ENST00000274695	human	ensembl	74_37	+1	known	missense	c.718	p.D240N	0.998	pfam_rSAM,smart_Elp3/MiaB/NifB,tigrfam_MiaB-like_B,tigrfam_Methylthiotransferase	pfam_Methylthiotransferase_N,pfam_rSAM,pfam_TRAM_dom,smart_Elp3/MiaB/NifB,pfscan_TRAM_dom,tigrfam_MiaB-like_B,tigrfam_Methylthiotransferase	-	no_errors	CDKAL1	HGNC	ENSG00000145996				84	0	0	54	20	27.027
HIST1H1E	0	genome.wustl.edu	37	6	26157199	26157199	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	6	26157199	26157199	T	C	SNP	HIST1H1E	ENST00000304218	human	ensembl	74_37	+1	known	missense	c.581	p.V194A	0.999	prints_Histone_H5	pfam_Histone_H1/H5_H15,smart_Histone_H1/H5_H15,prints_Histone_H5	-	no_errors	HIST1H1E	HGNC	ENSG00000168298				65	0	0	55	7	11.2903
HIST1H2BD	0	genome.wustl.edu	37	6	26158753	26158753	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	6	26158753	26158753	T	A	SNP	HIST1H2BD	ENST00000289316	human	ensembl	74_37	+1	known	missense	c.356	p.V119D	1.000	superfamily_Histone-fold,smart_Histone_H2B,prints_Histone_H2B	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2B,prints_Histone_H2B	-	no_errors	HIST1H2BD	HGNC	ENSG00000158373				193	0	0	85	17	16.6667
HIST1H3E	0	genome.wustl.edu	37	6	26225698	26225698	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	6	26225698	26225698	G	A	SNP	HIST1H3E	ENST00000360408	human	ensembl	74_37	+1	known	missense	c.316	p.E106K	1.000	pfam_Histone_core_D,superfamily_Histone-fold,smart_Histone_H3,prints_Histone_H3	pfam_Histone_core_D,superfamily_Histone-fold,smart_Histone_H3,prints_Histone_H3	-	no_errors	HIST1H3E	HGNC	ENSG00000196966				175	0	0	39	45	53.5714
BTN2A1	0	genome.wustl.edu	37	6	26468337	26468337	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	6	26468337	26468337	G	T	SNP	BTN2A1	ENST00000312541	human	ensembl	74_37	+1	known	missense	c.1144	p.A382S	0.140	superfamily_ConA-like_lec_gl_sf,smart_PRY,prints_Butyrophylin,pfscan_B30.2/SPRY	pfam_SPRY_rcpt,pfam_Ig_V-set,pfam_CD80_C2-set,superfamily_ConA-like_lec_gl_sf,smart_Ig_sub,smart_Ig_V-set_subgr,smart_PRY,smart_SPla/RYanodine_receptor_subgr,prints_Butyrophylin,pfscan_B30.2/SPRY,pfscan_Ig-like_dom	-	no_errors	BTN2A1	HGNC	ENSG00000112763				258	1	0.3861	61	51	45.5357
MYLK4	0	genome.wustl.edu	37	6	2683360	2683360	+	Silent	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	6	2683360	2683360	A	G	SNP	MYLK4	ENST00000268446	human	ensembl	74_37	-1	known	silent	c.582	p.D194	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	MYLK4	HGNC	ENSG00000145949				123	0	0	51	33	39.2857
HIST1H2BL	0	genome.wustl.edu	37	6	27775413	27775413	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	6	27775413	27775413	G	A	SNP	HIST1H2BL	ENST00000377401	human	ensembl	74_37	-1	known	missense	c.272	p.T91I	1.000	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2B,prints_Histone_H2B	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2B,prints_Histone_H2B	-	no_errors	HIST1H2BL	HGNC	ENSG00000185130				225	0	0	76	9	10.5882
HIST1H1B	0	genome.wustl.edu	37	6	27834749	27834749	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	6	27834749	27834749	T	C	SNP	HIST1H1B	ENST00000331442	human	ensembl	74_37	-1	known	missense	c.559	p.T187A	0.220	NULL	pfam_Histone_H1/H5_H15,smart_Histone_H1/H5_H15,prints_Histone_H5	-	no_errors	HIST1H1B	HGNC	ENSG00000184357				191	0	0	52	38	42.2222
ZKSCAN4	0	genome.wustl.edu	37	6	28213206	28213206	+	Silent	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	6	28213206	28213206	C	T	SNP	ZKSCAN4	ENST00000377294	human	ensembl	74_37	-1	known	silent	c.1326	p.R442	0.348	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZKSCAN4	HGNC	ENSG00000187626				243	0	0	95	11	10.3774
HLA-F	0	genome.wustl.edu	37	6	29692222	29692222	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	6	29692222	29692222	G	A	SNP	HLA-F	ENST00000259951	human	ensembl	74_37	+1	known	missense	c.607	p.A203T	0.713	NULL	pfam_MHC_I_a_a1/a2,pfam_Ig_C1-set,superfamily_MHC_I/II-like_Ag-recog,smart_Ig_C1-set,pfscan_Ig-like_dom,prints_MHC_I_a	-	no_errors	HLA-F	HGNC	ENSG00000204642				64	0	0	20	14	41.1765
HLA-A	0	genome.wustl.edu	37	6	29911191	29911191	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	6	29911191	29911191	G	A	SNP	HLA-A	ENST00000376806	human	ensembl	74_37	+1	known	missense	c.490	p.A164T	0.977	pfam_MHC_I_a_a1/a2,superfamily_MHC_I/II-like_Ag-recog	pfam_MHC_I_a_a1/a2,pfam_Ig_C1-set,pfam_MHC_I_a_C,superfamily_MHC_I/II-like_Ag-recog,smart_Ig_C1-set,pfscan_Ig-like_dom,prints_MHC_I_a	-	no_errors	HLA-A	HGNC	ENSG00000206503				50	0	0	22	6	21.4286
HLA-C	0	genome.wustl.edu	37	6	31239472	31239472	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	6	31239472	31239472	A	G	SNP	HLA-C	ENST00000383329	human	ensembl	74_37	-1	known	missense	c.247	p.Y83H	0.785	pfam_MHC_I_a_a1/a2,superfamily_MHC_I/II-like_Ag-recog,prints_MHC_I_a	pfam_MHC_I_a_a1/a2,pfam_Ig_C1-set,pfam_MHC_I_a_C,superfamily_MHC_I/II-like_Ag-recog,smart_Ig_C1-set,pfscan_Ig-like_dom,prints_MHC_I_a	-	no_errors	HLA-C	HGNC	ENSG00000204525				99	0	0	28	22	44
PRRC2A	0	genome.wustl.edu	37	6	31599957	31599957	+	Silent	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	6	31599957	31599957	C	T	SNP	PRRC2A	ENST00000376007	human	ensembl	74_37	+1	known	silent	c.3507	p.R1169	0.111	NULL	pfam_BAT2_N	-	no_errors	PRRC2A	HGNC	ENSG00000204469				103	0	0	18	28	60.8696
VARS	0	genome.wustl.edu	37	6	31745321	31745321	+	RNA	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	6	31745321	31745321	C	T	SNP	VARS	ENST00000470953	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.986	-	-	-	no_errors	VARS	HGNC	ENSG00000204394				64	0	0	26	4	13.3333
PBX2	0	genome.wustl.edu	37	6	32156218	32156218	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	6	32156218	32156218	T	C	SNP	PBX2	ENST00000375050	human	ensembl	74_37	-1	known	missense	c.359	p.N120S	1.000	pfam_PBX	pfam_PBX,pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	-	no_errors	PBX2	HGNC	ENSG00000204304				129	0	0	24	21	46.6667
HLA-DQA2	0	genome.wustl.edu	37	6	32713800	32713800	+	Silent	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	6	32713800	32713800	C	T	SNP	HLA-DQA2	ENST00000374940	human	ensembl	74_37	+1	known	silent	c.564	p.D188	1.000	pfam_Ig_C1-set,pfam_CD80_C2-set,smart_Ig_C1-set,pfscan_Ig-like_dom	pfam_MHC_II_a_N,pfam_Ig_C1-set,pfam_CD80_C2-set,superfamily_MHC_I/II-like_Ag-recog,smart_MHC_II_a_N,smart_Ig_C1-set,pfscan_Ig-like_dom	-	no_errors	HLA-DQA2	HGNC	ENSG00000237541				317	0	0	77	73	48.6667
TAP2	0	genome.wustl.edu	37	6	32803014	32803014	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	6	32803014	32803014	T	C	SNP	TAP2	ENST00000374897	human	ensembl	74_37	-1	known	missense	c.862	p.I288V	0.395	pfam_ABC_transptr_TM_dom,superfamily_ABC1_TM_dom,pfscan_ABC1_TM_dom,tigrfam_Ag_transporter2	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC1_TM_dom,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom,prints_ABC_B3,prints_ABC_B2,tigrfam_Ag_transporter2	-	no_errors	TAP2	HGNC	ENSG00000204267				79	0	0	31	3	8.82353
TAP2	0	genome.wustl.edu	37	6	32805593	32805593	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	6	32805593	32805593	T	C	SNP	TAP2	ENST00000374897	human	ensembl	74_37	-1	known	missense	c.418	p.R140G	0.991	superfamily_ABC1_TM_dom,tigrfam_Ag_transporter2	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC1_TM_dom,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom,prints_ABC_B3,prints_ABC_B2,tigrfam_Ag_transporter2	-	no_errors	TAP2	HGNC	ENSG00000204267				120	0	0	39	14	26.4151
PSMB8	0	genome.wustl.edu	37	6	32810470	32810470	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	6	32810470	32810470	C	T	SNP	PSMB8	ENST00000374882	human	ensembl	74_37	-1	known	missense	c.386	p.R129H	1.000	pfam_Proteasome_sua/b	pfam_Proteasome_sua/b,prints_Pept_T1A_subB	-	no_errors	PSMB8	HGNC	ENSG00000204264				97	0	0	21	16	43.2432
DAXX	0	genome.wustl.edu	37	6	33287839	33287839	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	6	33287839	33287839	C	T	SNP	DAXX	ENST00000266000	human	ensembl	74_37	-1	known	missense	c.1414	p.E472K	0.997	pfam_Daxx	pfam_Daxx	-	no_errors	DAXX	HGNC	ENSG00000204209				52	0	0	16	10	38.4615
ITPR3	0	genome.wustl.edu	37	6	33634993	33634993	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	6	33634993	33634993	G	A	SNP	ITPR3	ENST00000374316	human	ensembl	74_37	+1	known	missense	c.1639	p.A547T	1.000	pfam_Ca-rel_channel	pfam_Ca-rel_channel,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ARM-type_fold,smart_MIR_motif,prints_InsP3_rcpt-bd,pfscan_MIR_motif	-	no_errors	ITPR3	HGNC	ENSG00000096433				116	0	0	54	5	8.47458
FANCE	0	genome.wustl.edu	37	6	35423675	35423675	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	6	35423675	35423675	C	T	SNP	FANCE	ENST00000229769	human	ensembl	74_37	+1	known	missense	c.400	p.R134C	0.008	NULL	pfam_Fanconi_anaemia_gr_E_prot_C	-	no_errors	FANCE	HGNC	ENSG00000112039				123	0	0	29	35	54.6875
TULP1	0	genome.wustl.edu	37	6	35471339	35471339	+	Silent	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	6	35471339	35471339	T	C	SNP	TULP1	ENST00000229771	human	ensembl	74_37	-1	known	silent	c.1320	p.R440	0.980	pfam_Tubby_C,superfamily_Tubby_C-like	pfam_Tubby_C,superfamily_Tubby_C-like,prints_Tubby_C	-	no_errors	TULP1	HGNC	ENSG00000112041				14	0	0	0	4	100
CDKN1A	0	genome.wustl.edu	37	6	36651993	36651993	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	6	36651993	36651993	G	A	SNP	CDKN1A	ENST00000448526	human	ensembl	74_37	+1	known	missense	c.217	p.A73T	0.997	pfam_CDI	pfam_CDI	-	no_errors	CDKN1A	HGNC	ENSG00000124762				93	0	0	44	10	18.5185
MTCH1	0	genome.wustl.edu	37	6	36946377	36946377	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	6	36946377	36946377	G	A	SNP	MTCH1	ENST00000373627	human	ensembl	74_37	-1	known	silent	c.417	p.I139	0.199	superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	-	no_errors	MTCH1	HGNC	ENSG00000137409				197	0	0	46	43	48.3146
MDGA1	0	genome.wustl.edu	37	6	37623659	37623659	+	Silent	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	6	37623659	37623659	T	C	SNP	MDGA1	ENST00000297153	human	ensembl	74_37	-1	known	silent	c.396	p.P132	0.001	pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_MAM_dom,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_MAM_dom,pfscan_Fibronectin_type3,pfscan_MAM_dom,pfscan_Ig-like_dom	-	no_errors	MDGA1	HGNC	ENSG00000112139				29	0	0	9	8	47.0588
FAM50B	0	genome.wustl.edu	37	6	3850929	3850929	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	6	3850929	3850929	G	A	SNP	FAM50B	ENST00000380272	human	ensembl	74_37	+1	novel	missense	c.884	p.R295H	1.000	pfam_XAP5	pfam_XAP5	-	no_errors	FAM50B	HGNC	ENSG00000145945				142	0	0	57	31	35.2273
GLO1	0	genome.wustl.edu	37	6	38650639	38650639	+	Silent	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	6	38650639	38650639	A	G	SNP	GLO1	ENST00000373365	human	ensembl	74_37	-1	known	silent	c.321	p.T107	0.980	pfam_Glyas_Fos-R_dOase_dom,tigrfam_Glyoxalase_1	pfam_Glyas_Fos-R_dOase_dom,tigrfam_Glyoxalase_1	-	no_errors	GLO1	HGNC	ENSG00000124767				109	0	0	35	23	39.6552
DNAH8	0	genome.wustl.edu	37	6	38743627	38743627	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	6	38743627	38743627	A	G	SNP	DNAH8	ENST00000359357	human	ensembl	74_37	+1	known	missense	c.1211	p.Y404C	0.998	pfam_Dynein_heavy_dom-1	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH8	HGNC	ENSG00000124721				167	0	0	68	4	5.55556
DNAH8	0	genome.wustl.edu	37	6	38838249	38838249	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	6	38838249	38838249	A	G	SNP	DNAH8	ENST00000359357	human	ensembl	74_37	+1	known	missense	c.6250	p.T2084A	0.037	superfamily_P-loop_NTPase	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH8	HGNC	ENSG00000124721				159	0	0	81	5	5.81395
DNAH8	0	genome.wustl.edu	37	6	38840893	38840893	+	Silent	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	6	38840893	38840893	C	T	SNP	DNAH8	ENST00000359357	human	ensembl	74_37	+1	known	silent	c.6798	p.S2266	0.997	smart_AAA+_ATPase	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH8	HGNC	ENSG00000124721				176	0	0	83	14	14.433
DNAH8	0	genome.wustl.edu	37	6	38913267	38913267	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	6	38913267	38913267	C	T	SNP	DNAH8	ENST00000359357	human	ensembl	74_37	+1	known	missense	c.11381	p.A3794V	1.000	NULL	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH8	HGNC	ENSG00000124721				201	0	0	49	39	44.3182
LRFN2	0	genome.wustl.edu	37	6	40359769	40359769	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	6	40359769	40359769	G	A	SNP	LRFN2	ENST00000338305	human	ensembl	74_37	-1	known	silent	c.2283	p.G761	1.000	NULL	pfam_Ig_I-set,pfam_Leu-rich_rpt,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	LRFN2	HGNC	ENSG00000156564				96	0	0	33	19	36.5385
LRFN2	0	genome.wustl.edu	37	6	40399694	40399694	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	6	40399694	40399694	T	C	SNP	LRFN2	ENST00000338305	human	ensembl	74_37	-1	known	missense	c.1159	p.S387G	0.996	NULL	pfam_Ig_I-set,pfam_Leu-rich_rpt,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	LRFN2	HGNC	ENSG00000156564				105	0	0	41	8	16.3265
PRPF4B	0	genome.wustl.edu	37	6	4044165	4044165	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	6	4044165	4044165	C	T	SNP	PRPF4B	ENST00000337659	human	ensembl	74_37	+1	known	missense	c.1769	p.A590V	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	PRPF4B	HGNC	ENSG00000112739				187	0	0	110	54	32.9268
PRPF4B	0	genome.wustl.edu	37	6	4060797	4060797	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	6	4060797	4060797	C	T	SNP	PRPF4B	ENST00000337659	human	ensembl	74_37	+1	known	nonsense	c.2971	p.R991*	1.000	pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	PRPF4B	HGNC	ENSG00000112739				89	0	0	34	14	29.1667
UNC5CL	0	genome.wustl.edu	37	6	40996272	40996272	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	6	40996272	40996272	C	T	SNP	UNC5CL	ENST00000244565	human	ensembl	74_37	-1	known	missense	c.1397	p.G466D	1.000	pfam_Death_domain,superfamily_DEATH-like_dom,smart_Death_domain,pfscan_Death_domain	pfam_ZU5,pfam_Death_domain,superfamily_DEATH-like_dom,smart_ZU5,smart_Death_domain,pfscan_Death_domain,pfscan_ZU5	-	no_errors	UNC5CL	HGNC	ENSG00000124602				119	0	0	48	9	15.7895
NCR2	0	genome.wustl.edu	37	6	41303947	41303947	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	6	41303947	41303947	T	A	SNP	NCR2	ENST00000373089	human	ensembl	74_37	+1	known	missense	c.175	p.S59T	0.001	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like_dom	-	no_errors	NCR2	HGNC	ENSG00000096264				89	0	0	38	8	17.3913
NCR2	0	genome.wustl.edu	37	6	41309564	41309564	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	6	41309564	41309564	C	T	SNP	NCR2	ENST00000373089	human	ensembl	74_37	+1	known	missense	c.427	p.R143C	0.003	NULL	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like_dom	-	no_errors	NCR2	HGNC	ENSG00000096264				190	1	0.52356	43	33	43.4211
GLTSCR1L	0	genome.wustl.edu	37	6	42797264	42797264	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	6	42797264	42797264	A	G	SNP	GLTSCR1L	ENST00000314073	human	ensembl	74_37	+1	known	missense	c.1193	p.Q398R	0.999	NULL	NULL	-	no_errors	GLTSCR1L	HGNC	ENSG00000112624				787	0	0	623	38	5.74887
GLTSCR1L	0	genome.wustl.edu	37	6	42797872	42797872	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	6	42797872	42797872	A	G	SNP	GLTSCR1L	ENST00000314073	human	ensembl	74_37	+1	known	missense	c.1801	p.T601A	0.959	NULL	NULL	-	no_errors	GLTSCR1L	HGNC	ENSG00000112624				175	0	0	137	14	9.27152
CUL9	0	genome.wustl.edu	37	6	43155501	43155501	+	Silent	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	6	43155501	43155501	C	T	SNP	CUL9	ENST00000252050	human	ensembl	74_37	+1	known	silent	c.1632	p.A544	0.304	NULL	pfam_Cullin_N,pfam_CPH_domain,pfam_Znf_C6HC,pfam_APC_su10/DOC_dom,superfamily_Galactose-bd-like,superfamily_Cullin_homology,superfamily_ARM-type_fold,superfamily_UBA-like,smart_Cullin_neddylation_domain,smart_Znf_C6HC,pfscan_Znf_RING,pfscan_Cullin_homology	-	no_errors	CUL9	HGNC	ENSG00000112659				237	0	0	107	60	35.9281
ZNF318	0	genome.wustl.edu	37	6	43305768	43305768	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	6	43305768	43305768	T	C	SNP	ZNF318	ENST00000361428	human	ensembl	74_37	-1	known	missense	c.5968	p.T1990A	0.843	NULL	smart_Znf_U1	-	no_errors	ZNF318	HGNC	ENSG00000171467				278	0	0	181	12	6.21762
ZNF318	0	genome.wustl.edu	37	6	43305890	43305890	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	6	43305890	43305890	T	C	SNP	ZNF318	ENST00000361428	human	ensembl	74_37	-1	known	missense	c.5846	p.Q1949R	0.003	NULL	smart_Znf_U1	-	no_errors	ZNF318	HGNC	ENSG00000171467				200	0	0	141	10	6.62252
GTPBP2	0	genome.wustl.edu	37	6	43594698	43594698	+	RNA	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	6	43594698	43594698	A	G	SNP	GTPBP2	ENST00000476510	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.026	-	-	-	no_errors	GTPBP2	HGNC	ENSG00000172432				142	0	0	74	28	27.451
MEP1A	0	genome.wustl.edu	37	6	46800870	46800870	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	6	46800870	46800870	C	T	SNP	MEP1A	ENST00000230588	human	ensembl	74_37	+1	known	missense	c.1204	p.R402C	1.000	pirsf_Pept_M12A_Meprin,pfam_MAM_dom,superfamily_ConA-like_lec_gl_sf,smart_MAM_dom,prints_MAM_dom,pfscan_MAM_dom	pirsf_Pept_M12A_Meprin,pfam_Peptidase_M12A,pfam_MATH,pfam_MAM_dom,pfam_EG-like_dom,superfamily_TRAF-like,superfamily_ConA-like_lec_gl_sf,smart_Peptidase_Metallo,smart_MAM_dom,smart_MATH,prints_Peptidase_M12A,prints_MAM_dom,pfscan_EG-like_dom,pfscan_MATH,pfscan_MAM_dom	-	no_errors	MEP1A	HGNC	ENSG00000112818				212	0	0	150	9	5.66038
CDYL	0	genome.wustl.edu	37	6	4892220	4892220	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	6	4892220	4892220	G	A	SNP	CDYL	ENST00000328908	human	ensembl	74_37	+1	known	missense	c.460	p.V154M	0.956	NULL	pfam_Crotonase_core_superfam,pfam_Chromo_domain,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,pfscan_Chromo_domain/shadow	-	no_errors	CDYL	HGNC	ENSG00000153046				220	0	0	97	42	30.2158
LRRC1	0	genome.wustl.edu	37	6	53785559	53785559	+	Silent	SNP	G	G	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	6	53785559	53785559	G	T	SNP	LRRC1	ENST00000370888	human	ensembl	74_37	+1	known	silent	c.1416	p.T472	1.000	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC1	HGNC	ENSG00000137269				103	0	0	52	25	32.4675
GFRAL	0	genome.wustl.edu	37	6	55214923	55214923	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	6	55214923	55214923	T	C	SNP	GFRAL	ENST00000340465	human	ensembl	74_37	+1	known	missense	c.350	p.L117P	0.012	NULL	pfam_GDNF/GAS1,smart_GDNF/GAS1	-	no_errors	GFRAL	HGNC	ENSG00000187871				47	0	0	18	9	33.3333
BAG2	0	genome.wustl.edu	37	6	57048631	57048631	+	Silent	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	6	57048631	57048631	C	T	SNP	BAG2	ENST00000370693	human	ensembl	74_37	+1	known	silent	c.279	p.T93	0.004	NULL	pfam_BAG_domain,smart_BAG_domain,pfscan_BAG_domain	-	no_errors	BAG2	HGNC	ENSG00000112208				228	0	0	98	50	33.7838
OGFRL1	0	genome.wustl.edu	37	6	72011356	72011356	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	6	72011356	72011356	G	A	SNP	OGFRL1	ENST00000370435	human	ensembl	74_37	+1	known	silent	c.960	p.S320	0.000	pfam_OGF_rcpt	pfam_OGF_rcpt	-	no_errors	OGFRL1	HGNC	ENSG00000119900				132	0	0	58	35	37.6344
RREB1	0	genome.wustl.edu	37	6	7231269	7231269	+	Silent	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	6	7231269	7231269	T	C	SNP	RREB1	ENST00000379938	human	ensembl	74_37	+1	known	silent	c.2937	p.L979	0.721	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	RREB1	HGNC	ENSG00000124782				74	0	0	35	2	5.40541
RREB1	0	genome.wustl.edu	37	6	7231588	7231588	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	6	7231588	7231588	G	A	SNP	RREB1	ENST00000379938	human	ensembl	74_37	+1	known	missense	c.3256	p.V1086M	0.996	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	RREB1	HGNC	ENSG00000124782				145	0	0	79	26	24.7619
KCNQ5	0	genome.wustl.edu	37	6	73787213	73787213	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	6	73787213	73787213	A	G	SNP	KCNQ5	ENST00000402622	human	ensembl	74_37	+1	known	missense	c.785	p.H262R	1.000	pfam_Ion_trans_dom,prints_K_chnl_volt-dep_KCNQ,prints_K_chnl	pfam_K_chnl_volt-dep_KCNQ_C,pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom,prints_K_chnl_volt-dep_KCNQ,prints_K_chnl	-	no_errors	KCNQ5	HGNC	ENSG00000185760				41	0	0	35	3	7.89474
KHDC3L	0	genome.wustl.edu	37	6	74072843	74072843	+	Silent	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	6	74072843	74072843	C	T	SNP	KHDC3L	ENST00000370367	human	ensembl	74_37	+1	known	silent	c.195	p.H65	0.000	NULL	NULL	-	no_errors	KHDC3L	HGNC	ENSG00000203908				194	0	0	71	30	29.703
MB21D1	0	genome.wustl.edu	37	6	74138431	74138431	+	Splice_Site	SNP	C	C	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	6	74138431	74138431	C	A	SNP	MB21D1	ENST00000370315	human	ensembl	74_37	-1	known	splice_site	c.1217+1	e4+1	1.000	-	-	-	no_errors	MB21D1	HGNC	ENSG00000164430				89	0	0	45	15	25
CD109	0	genome.wustl.edu	37	6	74517820	74517820	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	6	74517820	74517820	G	A	SNP	CD109	ENST00000287097	human	ensembl	74_37	+1	known	silent	c.3204	p.V1068	0.116	pfam_A2M_comp,superfamily_Terpenoid_cyclase/PrenylTrfase	pfam_A2M_comp,pfam_A2M_N_2,pfam_Macroglobln_a2,pfam_A-macroglobulin_rcpt-bd,pfam_A2M_N,pfam_MacrogloblnA2_thiol-ester-bond,superfamily_Terpenoid_cyclase/PrenylTrfase,superfamily_A-macroglobulin_rcpt-bd	-	no_errors	CD109	HGNC	ENSG00000156535				92	0	0	33	12	26.6667
TXNDC5	0	genome.wustl.edu	37	6	7904900	7904900	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	6	7904900	7904900	T	C	SNP	TXNDC5	ENST00000379757	human	ensembl	74_37	-1	known	missense	c.320	p.N107S	1.000	pfam_Thioredoxin_domain,superfamily_Thioredoxin-like_fold	pfam_Thioredoxin_domain,superfamily_Thioredoxin-like_fold,prints_Thioredoxin,tigrfam_Disulphide_isomerase	-	no_errors	TXNDC5	HGNC	ENSG00000239264				100	0	0	71	6	7.79221
PHIP	0	genome.wustl.edu	37	6	79726343	79726343	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	6	79726343	79726343	G	A	SNP	PHIP	ENST00000275034	human	ensembl	74_37	-1	known	missense	c.1153	p.R385C	0.995	pfam_WD40_repeat,superfamily_Quinonprotein_ADH-like_supfam,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,pfam_Bromodomain,superfamily_Quinonprotein_ADH-like_supfam,superfamily_Bromodomain,smart_WD40_repeat,smart_Bromodomain,pfscan_Bromodomain,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Bromodomain	-	no_errors	PHIP	HGNC	ENSG00000146247				221	0	0	95	42	30.6569
SH3BGRL2	0	genome.wustl.edu	37	6	80406276	80406276	+	Silent	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	6	80406276	80406276	A	G	SNP	SH3BGRL2	ENST00000369838	human	ensembl	74_37	+1	known	silent	c.306	p.A102	0.998	NULL	pfam_Glut_rich_SH3-bd,pfam_Glutaredoxin,superfamily_Thioredoxin-like_fold	-	no_errors	SH3BGRL2	HGNC	ENSG00000198478				182	0	0	88	38	30.1587
EEF1E1	0	genome.wustl.edu	37	6	8090483	8090483	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	6	8090483	8090483	T	C	SNP	EEF1E1	ENST00000379715	human	ensembl	74_37	-1	known	missense	c.320	p.Y107C	1.000	pfam_GST_C,superfamily_Glutathione-S-Trfase_C-like	pfam_GST_C,superfamily_Glutathione-S-Trfase_C-like	-	no_errors	EEF1E1	HGNC	ENSG00000124802				75	0	0	56	3	5.08475
TPBG	0	genome.wustl.edu	37	6	83075864	83075864	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	6	83075864	83075864	A	G	SNP	TPBG	ENST00000369750	human	ensembl	74_37	+1	known	missense	c.1186	p.M396V	1.000	NULL	pfam_Leu-rich_rpt,pfam_LRR-contain_N,pfam_Cys-rich_flank_reg_C,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	TPBG	HGNC	ENSG00000146242				144	0	0	84	56	40
DOPEY1	0	genome.wustl.edu	37	6	83838791	83838791	+	Silent	SNP	C	C	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	6	83838791	83838791	C	A	SNP	DOPEY1	ENST00000349129	human	ensembl	74_37	+1	known	silent	c.1905	p.S635	0.990	superfamily_ARM-type_fold	pfam_Dopey_N,superfamily_ARM-type_fold	-	no_errors	DOPEY1	HGNC	ENSG00000083097				213	0	0	125	11	8.08824
PGM3	0	genome.wustl.edu	37	6	83891632	83891632	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	6	83891632	83891632	C	T	SNP	PGM3	ENST00000513973	human	ensembl	74_37	-1	known	missense	c.610	p.E204K	0.946	pfam_A-D-PHexomutase_a/b/a-II,superfamily_A-D-PHexomutase_a/b/a-I/II/III,pirsf_PAGM	pfam_A-D-PHexomutase_a/b/a-I,pfam_A-D-PHexomutase_a/b/a-II,pfam_A-D-PHexomutase_C,superfamily_A-D-PHexomutase_a/b/a-I/II/III,pirsf_PAGM	-	no_errors	PGM3	HGNC	ENSG00000013375				129	0	0	56	21	27.2727
RWDD2A	0	genome.wustl.edu	37	6	83905673	83905673	+	Silent	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	6	83905673	83905673	C	T	SNP	RWDD2A	ENST00000369724	human	ensembl	74_37	+1	known	silent	c.561	p.C187	1.000	pfam_DUF1115,pirsf_UCP038021_RWD	pfam_DUF1115,pfam_RWD-domain,superfamily_UBQ-conjugating_enzyme/RWD,smart_RWD-domain,pirsf_UCP038021_RWD,pfscan_RWD-domain	-	no_errors	RWDD2A	HGNC	ENSG00000013392				208	0	0	143	9	5.92105
ME1	0	genome.wustl.edu	37	6	83926226	83926226	+	Silent	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	6	83926226	83926226	A	G	SNP	ME1	ENST00000369705	human	ensembl	74_37	-1	known	silent	c.1539	p.I513	0.970	pfam_Malic_NAD-bd,smart_Malic_NAD-bd	pfam_Malic_NAD-bd,pfam_Malic_N,smart_Malic_NAD-bd,prints_Malic_OxRdtase	-	no_errors	ME1	HGNC	ENSG00000065833				199	0	0	151	9	5.625
SLC35B3	0	genome.wustl.edu	37	6	8428136	8428136	+	Silent	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	6	8428136	8428136	T	C	SNP	SLC35B3	ENST00000426876	human	ensembl	74_37	-1	known	silent	c.651	p.L217	0.000	NULL	pfam_UAA	-	no_errors	SLC35B3	HGNC	ENSG00000124786				156	0	0	61	46	42.9907
SLC35B3	0	genome.wustl.edu	37	6	8430202	8430202	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	6	8430202	8430202	G	A	SNP	SLC35B3	ENST00000379660	human	ensembl	74_37	-1	known	silent	c.192	p.D64	0.598	NULL	pfam_UAA	-	no_errors	SLC35B3	HGNC	ENSG00000124786				97	0	0	42	18	30
GABRR1	0	genome.wustl.edu	37	6	89888623	89888623	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	6	89888623	89888623	G	A	SNP	GABRR1	ENST00000454853	human	ensembl	74_37	-1	known	missense	c.1306	p.P436S	0.008	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,prints_GABAAa_rho_rcpt,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABAA_rcpt,prints_GABAAa_rho1_rcpt,prints_Neur_channel,prints_GABAAa_rho_rcpt,tigrfam_Neur_channel	-	no_errors	GABRR1	HGNC	ENSG00000146276				333	0	0	154	54	25.9615
GABRR2	0	genome.wustl.edu	37	6	90024914	90024914	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	6	90024914	90024914	C	A	SNP	GABRR2	ENST00000602399	human	ensembl	74_37	-1	known	missense	c.46	p.A16S	0.077	NULL	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABAA_rcpt,prints_GABAAa_rho2_rcpt,prints_GABAAa_rho_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	GABRR2	HGNC	ENSG00000111886				505	1	0.197628	228	110	32.5444
MDN1	0	genome.wustl.edu	37	6	90409955	90409955	+	Silent	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	6	90409955	90409955	T	C	SNP	MDN1	ENST00000369393	human	ensembl	74_37	-1	known	silent	c.8697	p.S2899	0.552	pirsf_Midasin	pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA-3,superfamily_P-loop_NTPase,superfamily_ARM-type_fold,smart_AAA+_ATPase,smart_VWF_A,pirsf_Midasin,pfscan_VWF_A	-	no_errors	MDN1	HGNC	ENSG00000112159				198	0	0	102	6	5.55556
MDN1	0	genome.wustl.edu	37	6	90428119	90428119	+	Silent	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	6	90428119	90428119	T	C	SNP	MDN1	ENST00000369393	human	ensembl	74_37	-1	known	silent	c.6549	p.R2183	0.986	superfamily_P-loop_NTPase,smart_AAA+_ATPase,pirsf_Midasin	pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA-3,superfamily_P-loop_NTPase,superfamily_ARM-type_fold,smart_AAA+_ATPase,smart_VWF_A,pirsf_Midasin,pfscan_VWF_A	-	no_errors	MDN1	HGNC	ENSG00000112159				142	0	0	91	12	11.6505
MDN1	0	genome.wustl.edu	37	6	90504397	90504397	+	Silent	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	6	90504397	90504397	T	C	SNP	MDN1	ENST00000369393	human	ensembl	74_37	-1	known	silent	c.453	p.A151	0.951	superfamily_ARM-type_fold,pirsf_Midasin	pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA-3,superfamily_P-loop_NTPase,superfamily_ARM-type_fold,smart_AAA+_ATPase,smart_VWF_A,pirsf_Midasin,pfscan_VWF_A	-	no_errors	MDN1	HGNC	ENSG00000112159				133	0	0	70	24	25.5319
BACH2	0	genome.wustl.edu	37	6	90660168	90660168	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	6	90660168	90660168	C	T	SNP	BACH2	ENST00000257749	human	ensembl	74_37	-1	known	missense	c.1657	p.G553R	1.000	NULL	pfam_BTB_POZ,pfam_bZIP,superfamily_BTB/POZ_fold,superfamily_TF_DNA-bd,smart_BTB/POZ-like,smart_bZIP,pfscan_BTB/POZ-like,pfscan_bZIP	-	no_errors	BACH2	HGNC	ENSG00000112182				170	0	0	89	37	29.3651
MAP3K7	0	genome.wustl.edu	37	6	91263240	91263240	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	6	91263240	91263240	G	A	SNP	MAP3K7	ENST00000369329	human	ensembl	74_37	-1	known	missense	c.673	p.R225C	1.000	pirsf_MAPKKK7,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pirsf_MAPKKK7,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	MAP3K7	HGNC	ENSG00000135341				252	0	0	118	50	29.7619
MAP3K7	0	genome.wustl.edu	37	6	91269917	91269917	+	Silent	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	6	91269917	91269917	T	C	SNP	MAP3K7	ENST00000369329	human	ensembl	74_37	-1	known	silent	c.360	p.E120	0.997	pirsf_MAPKKK7,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pirsf_MAPKKK7,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	MAP3K7	HGNC	ENSG00000135341				128	0	0	50	31	38.2716
OFCC1	0	genome.wustl.edu	37	6	9933117	9933117	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	6	9933117	9933117	C	T	SNP	OFCC1	ENST00000316020	human	ensembl	74_37	-1	known	missense	c.346	p.D116N	0.998	NULL	NULL	-	no_errors	OFCC1	HGNC	ENSG00000181355				563	0	0	302	123	28.9412
USP45	0	genome.wustl.edu	37	6	99894017	99894017	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	6	99894017	99894017	T	C	SNP	USP45	ENST00000327681	human	ensembl	74_37	-1	known	missense	c.1631	p.Y544C	0.000	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	pfam_Peptidase_C19/C67,pfam_Znf_UBP,superfamily_Znf_FYVE_PHD,pfscan_Znf_UBP,pfscan_Peptidase_C19/C67	-	no_errors	USP45	HGNC	ENSG00000123552				108	0	0	76	25	24.7525
AGFG2	0	genome.wustl.edu	37	7	100160555	100160555	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	7	100160555	100160555	A	C	SNP	AGFG2	ENST00000300176	human	ensembl	74_37	+1	known	missense	c.1157	p.N386T	1.000	NULL	pfam_ArfGAP,smart_ArfGAP,pfscan_ArfGAP,prints_ArfGAP	-	no_errors	AGFG2	HGNC	ENSG00000106351				66	0	0	39	10	20.4082
LRCH4	0	genome.wustl.edu	37	7	100172795	100172795	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	7	100172795	100172795	C	T	SNP	LRCH4	ENST00000310300	human	ensembl	74_37	-1	known	missense	c.1987	p.V663I	0.001	NULL	pfam_Leu-rich_rpt,pfam_CH-domain,superfamily_CH-domain,smart_Leu-rich_rpt_typical-subtyp,smart_CH-domain,pfscan_CH-domain	-	no_errors	LRCH4	HGNC	ENSG00000077454				33	0	0	28	6	17.6471
TFR2	0	genome.wustl.edu	37	7	100218519	100218519	+	Silent	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	7	100218519	100218519	C	T	SNP	TFR2	ENST00000223051	human	ensembl	74_37	-1	known	silent	c.2367	p.A789	0.675	pfam_TFR-like_dimer_dom,superfamily_TFR-like_dimer_dom	pfam_TFR-like_dimer_dom,pfam_Peptidase_M28,pfam_Protease-assoc_domain,superfamily_TFR-like_dimer_dom	-	no_errors	TFR2	HGNC	ENSG00000106327				93	0	0	46	18	28.125
GIGYF1	0	genome.wustl.edu	37	7	100285025	100285025	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	7	100285025	100285025	G	A	SNP	GIGYF1	ENST00000275732	human	ensembl	74_37	-1	known	silent	c.378	p.R126	0.430	NULL	pfam_GYF,superfamily_GYF,smart_GYF,pfscan_GYF	-	no_errors	GIGYF1	HGNC	ENSG00000146830				327	1	0.304878	184	76	29.2308
ZAN	0	genome.wustl.edu	37	7	100352870	100352870	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	7	100352870	100352870	G	A	SNP	ZAN	ENST00000546292	human	ensembl	74_37	+1	known	missense	c.3146	p.R1049H	1.000	pfam_TIL_dom,superfamily_TIL_dom	pfam_VWF_type-D,pfam_MAM_dom,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_ConA-like_lec_gl_sf,superfamily_TIL_dom,smart_MAM_dom,smart_VWC_out,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_MAM_dom	-	no_errors	ZAN	HGNC	ENSG00000146839				287	0	0	169	66	28.0851
EPHB4	0	genome.wustl.edu	37	7	100414922	100414922	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	7	100414922	100414922	G	A	SNP	EPHB4	ENST00000358173	human	ensembl	74_37	-1	known	silent	c.1480	p.L494	1.000	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,pfam_Tyr-kin_ephrin_A/B_rcpt-like,superfamily_Kinase-like_dom,superfamily_Galactose-bd-like,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt_N_dom,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_dom	-	no_errors	EPHB4	HGNC	ENSG00000196411				29	0	0	13	9	40.9091
MUC17	0	genome.wustl.edu	37	7	100684691	100684691	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	7	100684691	100684691	A	G	SNP	MUC17	ENST00000306151	human	ensembl	74_37	+1	known	missense	c.9994	p.T3332A	0.001	NULL	pfam_SEA_dom,smart_SEA_dom,pfscan_EG-like_dom,pfscan_SEA_dom	-	no_errors	MUC17	HGNC	ENSG00000169876				687	0	0	359	176	32.8972
ZNHIT1	0	genome.wustl.edu	37	7	100866977	100866977	+	Silent	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	7	100866977	100866977	T	C	SNP	ZNHIT1	ENST00000305105	human	ensembl	74_37	+1	known	silent	c.297	p.P99	0.988	NULL	pfam_Znf_HIT,pfscan_Znf_HIT	-	no_errors	ZNHIT1	HGNC	ENSG00000106400				197	0	0	73	29	28.4314
DNAJC2	0	genome.wustl.edu	37	7	102962467	102962467	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	7	102962467	102962467	C	T	SNP	DNAJC2	ENST00000379263	human	ensembl	74_37	-1	known	missense	c.995	p.R332K	1.000	NULL	pfam_SANT/Myb,pfam_DnaJ_domain,superfamily_DnaJ_domain,superfamily_Homeodomain-like,smart_DnaJ_domain,smart_SANT/Myb,pfscan_Myb-like_dom,pfscan_DnaJ_domain	-	no_errors	DNAJC2	HGNC	ENSG00000105821				211	0	0	125	10	7.40741
KMT2E	0	genome.wustl.edu	37	7	104707214	104707214	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	7	104707214	104707214	C	T	SNP	KMT2E	ENST00000257745	human	ensembl	74_37	+1	known	missense	c.457	p.H153Y	1.000	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger	pfam_SET_dom,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_SET_dom,pfscan_SET_dom,pfscan_Znf_PHD-finger	-	no_errors	KMT2E	HGNC	ENSG00000005483				217	0	0	148	23	13.4503
PIK3CG	0	genome.wustl.edu	37	7	106513320	106513320	+	Silent	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	7	106513320	106513320	T	C	SNP	PIK3CG	ENST00000359195	human	ensembl	74_37	+1	known	silent	c.2224	p.L742	1.000	superfamily_Kinase-like_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_C2_dom,pfam_PI3K_Ras-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CG	HGNC	ENSG00000105851				166	0	0	74	42	36.2069
GPR22	0	genome.wustl.edu	37	7	107114677	107114677	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	7	107114677	107114677	A	G	SNP	GPR22	ENST00000304402	human	ensembl	74_37	+1	known	missense	c.172	p.S58G	1.000	pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	-	no_errors	GPR22	HGNC	ENSG00000172209				254	0	0	166	19	10.2703
C7orf60	0	genome.wustl.edu	37	7	112535788	112535788	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	7	112535788	112535788	G	A	SNP	C7orf60	ENST00000297145	human	ensembl	74_37	-1	known	silent	c.309	p.C103	1.000	NULL	pfam_DUF3321	-	no_errors	C7orf60	HGNC	ENSG00000164603				99	0	0	62	4	6.06061
PPP1R3A	0	genome.wustl.edu	37	7	113558625	113558625	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	7	113558625	113558625	T	C	SNP	PPP1R3A	ENST00000284601	human	ensembl	74_37	-1	known	missense	c.427	p.K143E	1.000	pfam_CBM_21,pfscan_CBM_21	pfam_CBM_21,pfscan_CBM_21	-	no_errors	PPP1R3A	HGNC	ENSG00000154415				133	0	0	77	27	25.9615
CAV1	0	genome.wustl.edu	37	7	116199315	116199315	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	7	116199315	116199315	C	T	SNP	CAV1	ENST00000341049	human	ensembl	74_37	+1	known	missense	c.511	p.R171C	1.000	pfam_Caveolin	pfam_Caveolin	-	no_errors	CAV1	HGNC	ENSG00000105974				142	0	0	61	18	22.7848
ST7	0	genome.wustl.edu	37	7	116849978	116849978	+	Splice_Site	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	7	116849978	116849978	T	C	SNP	ST7	ENST00000393443	human	ensembl	74_37	+1	known	splice_site	c.1171+2	e12+2	1.000	-	-	-	no_errors	ST7	HGNC	ENSG00000004866				124	0	0	59	23	28.0488
CTTNBP2	0	genome.wustl.edu	37	7	117374995	117374995	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	7	117374995	117374995	C	A	SNP	CTTNBP2	ENST00000160373	human	ensembl	74_37	-1	known	missense	c.3848	p.R1283M	1.000	NULL	pfam_Cortactin-binding_p2_N,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	CTTNBP2	HGNC	ENSG00000077063				95	0	0	50	16	24.2424
CTTNBP2	0	genome.wustl.edu	37	7	117432544	117432544	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	7	117432544	117432544	T	A	SNP	CTTNBP2	ENST00000160373	human	ensembl	74_37	-1	known	missense	c.706	p.T236S	1.000	NULL	pfam_Cortactin-binding_p2_N,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	CTTNBP2	HGNC	ENSG00000077063				105	0	0	66	5	7.04225
PTPRZ1	0	genome.wustl.edu	37	7	121651002	121651002	+	Silent	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	7	121651002	121651002	A	G	SNP	PTPRZ1	ENST00000393386	human	ensembl	74_37	+1	known	silent	c.1902	p.S634	0.001	NULL	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Carbonic_anhydrase_a,pfam_Fibronectin_type3,superfamily_Carbonic_anhydrase_a,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Carbonic_anhydrase_a,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRZ1	HGNC	ENSG00000106278				113	0	0	61	17	21.7949
SLC13A1	0	genome.wustl.edu	37	7	122821124	122821124	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	7	122821124	122821124	A	G	SNP	SLC13A1	ENST00000194130	human	ensembl	74_37	-1	known	missense	c.131	p.V44A	0.022	pfam_Na/sul_symport	pfam_Na/sul_symport,pfam_Cit_transptr-like_dom	-	no_errors	SLC13A1	HGNC	ENSG00000081800				107	0	0	50	16	24.2424
POT1	0	genome.wustl.edu	37	7	124467346	124467346	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	7	124467346	124467346	T	C	SNP	POT1	ENST00000607932	human	ensembl	74_37	-1	known	missense	c.1519	p.T507A	0.988	NULL	pfam_Telomer_end-bd_POT1/Cdc13,superfamily_NA-bd_OB-fold,smart_Telomer_end-bd_POT1/Cdc13	-	no_errors	POT1	HGNC	ENSG00000128513				48	0	0	36	4	10
POT1	0	genome.wustl.edu	37	7	124482958	124482958	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	7	124482958	124482958	C	T	SNP	POT1	ENST00000357628	human	ensembl	74_37	-1	known	missense	c.1066	p.A356T	0.988	NULL	pfam_Telomer_end-bd_POT1/Cdc13,superfamily_NA-bd_OB-fold,smart_Telomer_end-bd_POT1/Cdc13	-	no_errors	POT1	HGNC	ENSG00000128513				81	0	0	40	13	24.5283
CCDC136	0	genome.wustl.edu	37	7	128441250	128441250	+	Silent	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	7	128441250	128441250	T	C	SNP	CCDC136	ENST00000297788	human	ensembl	74_37	+1	known	silent	c.357	p.R119	0.892	NULL	NULL	-	no_errors	CCDC136	HGNC	ENSG00000128596				76	0	0	43	3	6.52174
FLNC	0	genome.wustl.edu	37	7	128486164	128486164	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	7	128486164	128486164	T	C	SNP	FLNC	ENST00000325888	human	ensembl	74_37	+1	known	missense	c.3911	p.V1304A	1.000	pfam_Filamin/ABP280_repeat-like,superfamily_Ig_E-set,smart_Filamin,pfscan_Filamin/ABP280_repeat-like	pfam_Filamin/ABP280_repeat-like,pfam_CH-domain,superfamily_CH-domain,superfamily_Ig_E-set,smart_CH-domain,smart_Filamin,pfscan_CH-domain,pfscan_Filamin/ABP280_repeat-like	-	no_errors	FLNC	HGNC	ENSG00000128591				105	1	0.943396	58	18	23.6842
CPA1	0	genome.wustl.edu	37	7	130021682	130021682	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	7	130021682	130021682	C	T	SNP	CPA1	ENST00000011292	human	ensembl	74_37	+1	known	missense	c.359	p.A120V	1.000	NULL	pfam_Peptidase_M14,pfam_Prot_inh_M14A,superfamily_Prot_inh_propept,smart_Peptidase_M14,prints_Peptidase_M14	-	no_errors	CPA1	HGNC	ENSG00000091704				74	0	0	29	10	25.641
PLXNA4	0	genome.wustl.edu	37	7	131864640	131864640	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	7	131864640	131864640	T	C	SNP	PLXNA4	ENST00000321063	human	ensembl	74_37	-1	known	missense	c.3680	p.Y1227C	1.000	superfamily_Ig_E-set,smart_IPT	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_Semap_dom,pfam_IPT,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_IPT,pfscan_Semap_dom	-	no_errors	PLXNA4	HGNC	ENSG00000221866				34	0	0	23	5	17.8571
PLXNA4	0	genome.wustl.edu	37	7	131895801	131895801	+	Silent	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	7	131895801	131895801	C	T	SNP	PLXNA4	ENST00000321063	human	ensembl	74_37	-1	known	silent	c.2199	p.G733	0.986	NULL	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_Semap_dom,pfam_IPT,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_IPT,pfscan_Semap_dom	-	no_errors	PLXNA4	HGNC	ENSG00000221866				52	0	0	26	8	23.5294
NUP205	0	genome.wustl.edu	37	7	135333276	135333276	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	7	135333276	135333276	G	A	SNP	NUP205	ENST00000285968	human	ensembl	74_37	+1	known	missense	c.6011	p.R2004H	1.000	NULL	pfam_Nup186/Nup192/Nup205	-	no_errors	NUP205	HGNC	ENSG00000155561				165	0	0	79	28	26.1682
TMEM213	0	genome.wustl.edu	37	7	138522647	138522647	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	7	138522647	138522647	C	T	SNP	TMEM213	ENST00000413208	human	ensembl	74_37	+1	putative	missense	c.188	p.A63V	0.000	NULL	NULL	-	no_errors	TMEM213	HGNC	ENSG00000214128				44	0	0	29	5	14.7059
KIAA1549	0	genome.wustl.edu	37	7	138579128	138579128	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	7	138579128	138579128	A	C	SNP	KIAA1549	ENST00000422774	human	ensembl	74_37	-1	known	missense	c.3992	p.F1331C	1.000	NULL	NULL	-	no_errors	KIAA1549	HGNC	ENSG00000122778				182	0	0	142	10	6.57895
HIPK2	0	genome.wustl.edu	37	7	139281496	139281496	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	7	139281496	139281496	T	C	SNP	HIPK2	ENST00000406875	human	ensembl	74_37	-1	known	missense	c.2684	p.D895G	0.997	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	HIPK2	HGNC	ENSG00000064393				259	0	0	126	45	26.3158
HIPK2	0	genome.wustl.edu	37	7	139281517	139281517	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	7	139281517	139281517	A	T	SNP	HIPK2	ENST00000406875	human	ensembl	74_37	-1	known	missense	c.2663	p.I888N	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	HIPK2	HGNC	ENSG00000064393				245	0	0	101	47	31.7568
ADCK2	0	genome.wustl.edu	37	7	140389471	140389471	+	Silent	SNP	C	C	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	7	140389471	140389471	C	A	SNP	ADCK2	ENST00000072869	human	ensembl	74_37	+1	known	silent	c.1632	p.T544	0.932	NULL	pfam_UbiB_dom,superfamily_Kinase-like_dom	-	no_errors	ADCK2	HGNC	ENSG00000133597				105	0	0	51	17	25
WEE2	0	genome.wustl.edu	37	7	141424039	141424039	+	Silent	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	7	141424039	141424039	A	G	SNP	WEE2	ENST00000397541	human	ensembl	74_37	+1	known	silent	c.1185	p.G395	0.998	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Wee1-like_protein_kinase,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Wee1-like_protein_kinase,pfscan_Prot_kinase_dom	-	no_errors	WEE2	HGNC	ENSG00000214102				212	0	0	104	43	29.2517
OR9A3P	0	genome.wustl.edu	37	7	141562955	141562955	+	RNA	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	7	141562955	141562955	A	G	SNP	OR9A3P	ENST00000482472	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.015	-	-	-	no_errors	OR9A3P	HGNC	ENSG00000240031				30	0	0	16	4	20
TAS2R38	0	genome.wustl.edu	37	7	141672607	141672607	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	7	141672607	141672607	C	T	SNP	TAS2R38	ENST00000547270	human	ensembl	74_37	-1	known	missense	c.883	p.A295T	0.000	pfam_TAS2_rcpt	pfam_TAS2_rcpt	-	no_errors	TAS2R38	HGNC	ENSG00000257138				120	0	0	70	11	13.5802
MGAM	0	genome.wustl.edu	37	7	141805634	141805634	+	Silent	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	7	141805634	141805634	T	C	SNP	MGAM	ENST00000549489	human	ensembl	74_37	+1	known	silent	c.5517	p.T1839	0.001	NULL	pfam_Glyco_hydro_31,pfam_P_trefoil,superfamily_Glycoside_hydrolase_SF,superfamily_Gal_mutarotase_SF_dom,smart_P_trefoil	-	no_errors	MGAM	HGNC	ENSG00000257335				139	0	0	87	45	34.0909
ENSG00000257743	0	genome.wustl.edu	37	7	141871910	141871910	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	7	141871910	141871910	T	C	SNP	ENSG00000257743	ENST00000477922	human	ensembl	74_37	+1	putative	missense	c.3364	p.S1122P	0.999	superfamily_Gal_mutarotase_SF_dom	pfam_Glyco_hydro_31,pfam_P_trefoil,superfamily_Glycoside_hydrolase_SF,superfamily_Gal_mutarotase_SF_dom,superfamily_P_trefoil,smart_P_trefoil	-	no_errors	RP11-1220K2.2	Clone_based_vega_gene	ENSG00000257743				9	0	0	8	3	27.2727
TRPV6	0	genome.wustl.edu	37	7	142575704	142575704	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	7	142575704	142575704	C	A	SNP	TRPV6	ENST00000359396	human	ensembl	74_37	-1	known	missense	c.204	p.E68D	0.001	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,tigrfam_TRP_channel	pfam_Ankyrin_rpt,pfam_Ion_trans_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_TRPV5/TRPV6,prints_TRPV6_channel,prints_Ankyrin_rpt,tigrfam_TRP_channel	-	no_errors	TRPV6	HGNC	ENSG00000165125				143	0	0	116	7	5.69106
CNTNAP2	0	genome.wustl.edu	37	7	146829377	146829377	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	7	146829377	146829377	C	A	SNP	CNTNAP2	ENST00000361727	human	ensembl	74_37	+1	known	missense	c.1124	p.P375H	1.000	superfamily_ConA-like_lec_gl_sf,pfscan_Laminin_G	pfam_Laminin_G,pfam_Coagulation_fac_5/8-C_type_dom,pfam_EG-like_dom,superfamily_Galactose-bd-like,superfamily_ConA-like_lec_gl_sf,superfamily_Fibrinogen_a/b/g_C_dom,smart_Coagulation_fac_5/8-C_type_dom,smart_Laminin_G,smart_EG-like_dom,smart_Neurexin-like,pfscan_EG-like_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_Laminin_G	-	no_errors	CNTNAP2	HGNC	ENSG00000174469				288	1	0.346021	198	22	10
DGKB	0	genome.wustl.edu	37	7	14733738	14733738	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	7	14733738	14733738	T	C	SNP	DGKB	ENST00000258767	human	ensembl	74_37	-1	known	missense	c.673	p.T225A	1.000	smart_EF_hand_dom,pfscan_EF_hand_dom	pfam_Diacylglycerol_kin_accessory,pfam_Diacylglycerol_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,smart_EF_hand_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Diacylglycerol_kinase_cat_dom,smart_Diacylglycerol_kin_accessory,pfscan_EF_hand_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd	-	no_errors	DGKB	HGNC	ENSG00000136267				18	0	0	7	3	30
CNTNAP2	0	genome.wustl.edu	37	7	148112646	148112646	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	7	148112646	148112646	A	G	SNP	CNTNAP2	ENST00000361727	human	ensembl	74_37	+1	known	missense	c.3934	p.M1312V	1.000	NULL	pfam_Laminin_G,pfam_Coagulation_fac_5/8-C_type_dom,pfam_EG-like_dom,superfamily_Galactose-bd-like,superfamily_ConA-like_lec_gl_sf,superfamily_Fibrinogen_a/b/g_C_dom,smart_Coagulation_fac_5/8-C_type_dom,smart_Laminin_G,smart_EG-like_dom,smart_Neurexin-like,pfscan_EG-like_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_Laminin_G	-	no_errors	CNTNAP2	HGNC	ENSG00000174469				153	1	0.649351	112	7	5.88235
CUL1	0	genome.wustl.edu	37	7	148489850	148489850	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	7	148489850	148489850	G	A	SNP	CUL1	ENST00000325222	human	ensembl	74_37	+1	known	silent	c.1839	p.Q613	1.000	pfam_Cullin_N,superfamily_Cullin_homology,pfscan_Cullin_homology	pfam_Cullin_N,pfam_Cullin_neddylation_domain,superfamily_Cullin_repeat-like_dom,superfamily_Cullin_homology,smart_Cullin_homology,smart_Cullin_neddylation_domain,pfscan_Cullin_homology	-	no_errors	CUL1	HGNC	ENSG00000055130				32	0	0	24	9	27.2727
ZNF786	0	genome.wustl.edu	37	7	148768111	148768111	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	7	148768111	148768111	G	A	SNP	ZNF786	ENST00000491431	human	ensembl	74_37	-1	known	missense	c.1753	p.R585C	0.002	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF786	HGNC	ENSG00000197362				75	0	0	27	17	38.6364
ZNF398	0	genome.wustl.edu	37	7	148876131	148876131	+	Silent	SNP	C	C	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	7	148876131	148876131	C	A	SNP	ZNF398	ENST00000540950	human	ensembl	74_37	+1	known	silent	c.1182	p.S394	0.658	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,pfam_DUF3669_Znf,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Krueppel-associated_box-rel	-	no_errors	ZNF398	HGNC	ENSG00000197024				356	0	0	177	76	30.0395
ZNF282	0	genome.wustl.edu	37	7	148921393	148921393	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	7	148921393	148921393	G	A	SNP	ZNF282	ENST00000262085	human	ensembl	74_37	+1	known	missense	c.1670	p.C557Y	0.958	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,pfam_DUF3669_Znf,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF282	HGNC	ENSG00000170265				48	0	0	17	12	41.3793
ZNF862	0	genome.wustl.edu	37	7	149545162	149545162	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	7	149545162	149545162	G	A	SNP	ZNF862	ENST00000223210	human	ensembl	74_37	+1	known	missense	c.580	p.A194T	0.986	smart_Znf_TTF	pfam_Krueppel-associated_box,pfam_HATC_dom_C,superfamily_Krueppel-associated_box,superfamily_RNaseH-like_dom,smart_Krueppel-associated_box,smart_Znf_TTF,pfscan_Krueppel-associated_box	-	no_errors	ZNF862	HGNC	ENSG00000106479				81	0	0	30	15	33.3333
ZNF862	0	genome.wustl.edu	37	7	149559482	149559482	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	7	149559482	149559482	A	G	SNP	ZNF862	ENST00000223210	human	ensembl	74_37	+1	known	missense	c.3233	p.Y1078C	0.968	NULL	pfam_Krueppel-associated_box,pfam_HATC_dom_C,superfamily_Krueppel-associated_box,superfamily_RNaseH-like_dom,smart_Krueppel-associated_box,smart_Znf_TTF,pfscan_Krueppel-associated_box	-	no_errors	ZNF862	HGNC	ENSG00000106479				52	0	0	15	10	40
ATP6V0E2	0	genome.wustl.edu	37	7	149575849	149575849	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	7	149575849	149575849	C	A	SNP	ATP6V0E2	ENST00000456496	human	ensembl	74_37	+1	known	missense	c.382	p.L128M	1.000	NULL	pfam_ATPase_V0-cplx_e1/e2_su	-	no_errors	ATP6V0E2	HGNC	ENSG00000171130				95	0	0	38	18	32.1429
SMARCD3	0	genome.wustl.edu	37	7	150936822	150936822	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	7	150936822	150936822	G	A	SNP	SMARCD3	ENST00000262188	human	ensembl	74_37	-1	known	missense	c.1184	p.T395M	1.000	NULL	pfam_SWIB_MDM2_domain,superfamily_SWIB_MDM2_domain,smart_SWIB_domain	-	no_errors	SMARCD3	HGNC	ENSG00000082014				154	0	0	32	31	49.2063
XRCC2	0	genome.wustl.edu	37	7	152345981	152345981	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	7	152345981	152345981	T	C	SNP	XRCC2	ENST00000359321	human	ensembl	74_37	-1	known	missense	c.589	p.T197A	0.811	pfam_DNA_recomb/repair_Rad51_C,superfamily_P-loop_NTPase,pfscan_DNA_recomb_RecA/RadB_ATP-bd	pfam_DNA_recomb/repair_Rad51_C,superfamily_P-loop_NTPase,pfscan_DNA_recomb_RecA/RadB_ATP-bd	-	no_errors	XRCC2	HGNC	ENSG00000196584				337	1	0.295858	224	26	10.4
PAXIP1	0	genome.wustl.edu	37	7	154738278	154738278	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	7	154738278	154738278	A	G	SNP	PAXIP1	ENST00000397192	human	ensembl	74_37	-1	known	missense	c.3077	p.L1026S	0.991	smart_BRCT_dom	pfam_BRCT_dom,superfamily_BRCT_dom,smart_BRCT_dom,pfscan_BRCT_dom	-	no_errors	PAXIP1	HGNC	ENSG00000157212				62	0	0	30	9	23.0769
RBM33	0	genome.wustl.edu	37	7	155537809	155537809	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	7	155537809	155537809	A	G	SNP	RBM33	ENST00000401878	human	ensembl	74_37	+1	known	missense	c.2492	p.Q831R	1.000	NULL	smart_RRM_dom	-	no_errors	RBM33	HGNC	ENSG00000184863				12	0	0	12	2	14.2857
RNF32	0	genome.wustl.edu	37	7	156437236	156437236	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	7	156437236	156437236	C	T	SNP	RNF32	ENST00000317955	human	ensembl	74_37	+1	known	missense	c.59	p.A20V	1.000	NULL	pfam_Znf_C3HC4_RING-type,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,smart_Znf_RING,pfscan_IQ_motif_EF-hand-BS,pfscan_Znf_RING	-	no_errors	RNF32	HGNC	ENSG00000105982				86	0	0	49	8	14.0351
RNF32	0	genome.wustl.edu	37	7	156469025	156469025	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	7	156469025	156469025	G	A	SNP	RNF32	ENST00000311822	human	ensembl	74_37	+1	known	missense	c.889	p.G297R	0.000	NULL	pfam_Znf_C3HC4_RING-type,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,smart_Znf_RING,pfscan_IQ_motif_EF-hand-BS,pfscan_Znf_RING	-	no_errors	RNF32	HGNC	ENSG00000105982				64	0	0	21	25	54.3478
NOM1	0	genome.wustl.edu	37	7	156742867	156742867	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	7	156742867	156742867	C	T	SNP	NOM1	ENST00000275820	human	ensembl	74_37	+1	known	missense	c.436	p.P146S	0.001	NULL	pfam_Initiation_fac_eIF4g_MI,pfam_MIF4G-like_typ-3,superfamily_ARM-type_fold,smart_MIF4G-like_typ-3,smart_Initiation_fac_eIF4g_MI	-	no_errors	NOM1	HGNC	ENSG00000146909				43	0	0	9	9	50
WDR60	0	genome.wustl.edu	37	7	158726880	158726880	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	7	158726880	158726880	G	A	SNP	WDR60	ENST00000407559	human	ensembl	74_37	+1	known	silent	c.2607	p.L869	1.000	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat	-	no_errors	WDR60	HGNC	ENSG00000126870				77	0	0	50	16	24.2424
SNX13	0	genome.wustl.edu	37	7	17861218	17861218	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	7	17861218	17861218	G	A	SNP	SNX13	ENST00000428135	human	ensembl	74_37	-1	known	missense	c.1759	p.R587W	1.000	pfam_Phox,superfamily_Phox,smart_Phox,pfscan_Phox	pfam_Phox_assoc,pfam_Sorting_nexin_C,pfam_Phox,pfam_RGS_dom,superfamily_Regulat_G_prot_signal_superfam,superfamily_Phox,superfamily_Cyt_c_oxidase_su5A/6,smart_PX_assoc_Snx13,smart_Regulat_G_prot_signal_superfam,smart_Phox,pfscan_Phox,pfscan_Phox_assoc,pfscan_Regulat_G_prot_signal_superfam	-	no_errors	SNX13	HGNC	ENSG00000071189				142	0	0	72	40	35.7143
ABCB5	0	genome.wustl.edu	37	7	20738131	20738131	+	Silent	SNP	T	T	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	7	20738131	20738131	T	G	SNP	ABCB5	ENST00000258738	human	ensembl	74_37	+1	known	silent	c.777	p.T259	0.992	pfam_ABC_transptr_TM_dom,superfamily_ABC1_TM_dom,pfscan_ABC1_TM_dom	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,pfam_ABC_ATPase_put,superfamily_P-loop_NTPase,superfamily_ABC1_TM_dom,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom	-	no_errors	ABCB5	HGNC	ENSG00000004846				72	0	0	38	13	25.4902
ABCB5	0	genome.wustl.edu	37	7	20782592	20782592	+	Silent	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	7	20782592	20782592	T	C	SNP	ABCB5	ENST00000258738	human	ensembl	74_37	+1	known	silent	c.1782	p.S594	0.064	superfamily_P-loop_NTPase,pfscan_ABC_transporter-like	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,pfam_ABC_ATPase_put,superfamily_P-loop_NTPase,superfamily_ABC1_TM_dom,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom	-	no_errors	ABCB5	HGNC	ENSG00000004846				137	0	0	51	30	37.037
SP4	0	genome.wustl.edu	37	7	21469680	21469680	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	7	21469680	21469680	A	T	SNP	SP4	ENST00000222584	human	ensembl	74_37	+1	known	missense	c.897	p.Q299H	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	SP4	HGNC	ENSG00000105866				140	0	0	72	21	22.5806
NUPL2	0	genome.wustl.edu	37	7	23224695	23224695	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	7	23224695	23224695	A	G	SNP	NUPL2	ENST00000258742	human	ensembl	74_37	+1	known	missense	c.128	p.N43S	0.360	NULL	smart_Znf_CCCH	-	no_errors	NUPL2	HGNC	ENSG00000136243				77	0	0	30	20	40
CHST12	0	genome.wustl.edu	37	7	2472447	2472447	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	7	2472447	2472447	G	T	SNP	CHST12	ENST00000258711	human	ensembl	74_37	+1	known	missense	c.173	p.R58M	0.000	NULL	pfam_Sulfotransferase,superfamily_P-loop_NTPase	-	no_errors	CHST12	HGNC	ENSG00000136213				175	1	0.568182	86	48	35.8209
BRAT1	0	genome.wustl.edu	37	7	2583482	2583482	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	7	2583482	2583482	C	A	SNP	BRAT1	ENST00000340611	human	ensembl	74_37	-1	known	missense	c.545	p.G182V	0.000	superfamily_ARM-type_fold	pfam_HEAT,superfamily_ARM-type_fold	-	no_errors	BRAT1	HGNC	ENSG00000106009				152	0	0	78	34	30.3571
CPVL	0	genome.wustl.edu	37	7	29111511	29111511	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	7	29111511	29111511	C	T	SNP	CPVL	ENST00000265394	human	ensembl	74_37	-1	known	missense	c.742	p.G248S	1.000	pfam_Peptidase_S10	pfam_Peptidase_S10,prints_Peptidase_S10	-	no_errors	CPVL	HGNC	ENSG00000106066				175	0	0	85	31	26.7241
CPVL	0	genome.wustl.edu	37	7	29152370	29152370	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	7	29152370	29152370	C	T	SNP	CPVL	ENST00000265394	human	ensembl	74_37	-1	known	missense	c.238	p.V80M	1.000	pfam_Peptidase_S10	pfam_Peptidase_S10,prints_Peptidase_S10	-	no_errors	CPVL	HGNC	ENSG00000106066				154	0	0	63	34	35.0515
SCRN1	0	genome.wustl.edu	37	7	29994974	29994974	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	7	29994974	29994974	G	A	SNP	SCRN1	ENST00000434476	human	ensembl	74_37	-1	known	silent	c.222	p.C74	1.000	NULL	pfam_Peptidase_C69	-	no_errors	SCRN1	HGNC	ENSG00000136193				120	1	0.826446	80	36	31.0345
NOD1	0	genome.wustl.edu	37	7	30492144	30492144	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	7	30492144	30492144	G	A	SNP	NOD1	ENST00000222823	human	ensembl	74_37	-1	known	missense	c.889	p.R297C	0.004	pfscan_NACHT_NTPase	pfam_CARD,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_CARD	-	no_errors	NOD1	HGNC	ENSG00000106100				59	0	0	28	19	40.4255
ADCYAP1R1	0	genome.wustl.edu	37	7	31126133	31126133	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	7	31126133	31126133	T	C	SNP	ADCYAP1R1	ENST00000304166	human	ensembl	74_37	+1	known	missense	c.805	p.Y269H	1.000	pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	pfam_GPCR_2_secretin-like,pfam_GPCR_2_extracellular_dom,smart_GPCR_2_extracellular_dom,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GPCR_2_PACAP_1_rcpt,prints_GPCR_2_secretin-like	-	no_errors	ADCYAP1R1	HGNC	ENSG00000078549				86	0	0	52	8	13.3333
DPY19L2P1	0	genome.wustl.edu	37	7	35121251	35121251	+	RNA	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	7	35121251	35121251	A	G	SNP	DPY19L2P1	ENST00000458672	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	DPY19L2P1	HGNC	ENSG00000189212				77	0	0	34	16	32
AOAH	0	genome.wustl.edu	37	7	36713584	36713584	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	7	36713584	36713584	A	G	SNP	AOAH	ENST00000258749	human	ensembl	74_37	-1	known	missense	c.254	p.L85S	0.004	pfam_SapB_2,superfamily_Saposin-like,smart_SaposinB,pfscan_SaposinB	pfam_Lipase_GDSL,pfam_SapB_2,superfamily_Saposin-like,smart_SaposinB,pfscan_SaposinB	-	no_errors	AOAH	HGNC	ENSG00000136250				85	0	0	48	20	29.4118
AMPH	0	genome.wustl.edu	37	7	38431519	38431519	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	7	38431519	38431519	C	T	SNP	AMPH	ENST00000356264	human	ensembl	74_37	-1	known	missense	c.1708	p.E570K	0.000	NULL	pfam_BAR_dom,pfam_SH3_2,superfamily_SH3_domain,smart_BAR_dom,smart_SH3_domain,pfscan_BAR_dom,pfscan_SH3_domain,prints_Amphiphysin,prints_Amphiphysin_1,prints_SH3_domain	-	no_errors	AMPH	HGNC	ENSG00000078053				89	0	0	58	25	30.1205
GLI3	0	genome.wustl.edu	37	7	42005485	42005485	+	Silent	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	7	42005485	42005485	C	T	SNP	GLI3	ENST00000395925	human	ensembl	74_37	-1	known	silent	c.3186	p.S1062	0.024	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	GLI3	HGNC	ENSG00000106571				144	1	0.689655	58	40	40.8163
GLI3	0	genome.wustl.edu	37	7	42006006	42006006	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	7	42006006	42006006	C	T	SNP	GLI3	ENST00000395925	human	ensembl	74_37	-1	known	missense	c.2665	p.V889M	0.999	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	GLI3	HGNC	ENSG00000106571				63	0	0	24	13	35.1351
HECW1	0	genome.wustl.edu	37	7	43351483	43351483	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	7	43351483	43351483	A	G	SNP	HECW1	ENST00000395891	human	ensembl	74_37	+1	known	missense	c.149	p.N50S	1.000	NULL	pfam_HECT,pfam_WW_dom,pfam_C2_dom,superfamily_HECT,superfamily_WW_dom,superfamily_C2_dom,smart_C2_dom,smart_WW_dom,smart_HECT,pfscan_HECT,pfscan_C2_dom,pfscan_WW_dom	-	no_errors	HECW1	HGNC	ENSG00000002746				149	0	0	64	21	24.7059
HECW1	0	genome.wustl.edu	37	7	43484721	43484721	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	7	43484721	43484721	G	A	SNP	HECW1	ENST00000395891	human	ensembl	74_37	+1	known	silent	c.1950	p.T650	0.009	NULL	pfam_HECT,pfam_WW_dom,pfam_C2_dom,superfamily_HECT,superfamily_WW_dom,superfamily_C2_dom,smart_C2_dom,smart_WW_dom,smart_HECT,pfscan_HECT,pfscan_C2_dom,pfscan_WW_dom	-	no_errors	HECW1	HGNC	ENSG00000002746				44	0	0	34	5	12.8205
HECW1	0	genome.wustl.edu	37	7	43508576	43508576	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	7	43508576	43508576	C	T	SNP	HECW1	ENST00000395891	human	ensembl	74_37	+1	known	nonsense	c.2971	p.R991*	1.000	NULL	pfam_HECT,pfam_WW_dom,pfam_C2_dom,superfamily_HECT,superfamily_WW_dom,superfamily_C2_dom,smart_C2_dom,smart_WW_dom,smart_HECT,pfscan_HECT,pfscan_C2_dom,pfscan_WW_dom	-	no_errors	HECW1	HGNC	ENSG00000002746				113	0	0	91	5	5.20833
BLVRA	0	genome.wustl.edu	37	7	43840132	43840132	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	7	43840132	43840132	G	A	SNP	BLVRA	ENST00000265523	human	ensembl	74_37	+1	known	missense	c.421	p.V141M	0.986	pfam_Biliverdin_Rdtase_cat,pirsf_Biliverdin_Rdtase_A	pfam_Biliverdin_Rdtase_cat,pfam_Oxidoreductase_N,pirsf_Biliverdin_Rdtase_A	-	no_errors	BLVRA	HGNC	ENSG00000106605				96	0	0	76	8	9.52381
CAMK2B	0	genome.wustl.edu	37	7	44365064	44365064	+	RNA	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	7	44365064	44365064	C	T	SNP	CAMK2B	ENST00000427209	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.365	-	-	-	no_errors	CAMK2B	HGNC	ENSG00000058404				10	0	0	7	8	53.3333
FOXK1	0	genome.wustl.edu	37	7	4800727	4800727	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	7	4800727	4800727	A	G	SNP	FOXK1	ENST00000328914	human	ensembl	74_37	+1	known	missense	c.1729	p.T577A	1.000	NULL	pfam_TF_fork_head,pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_FHA_dom,smart_TF_fork_head,pfscan_FHA_dom,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXK1	HGNC	ENSG00000164916				201	2	0.985222	111	46	29.2994
AP5Z1	0	genome.wustl.edu	37	7	4825182	4825182	+	Silent	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	7	4825182	4825182	C	T	SNP	AP5Z1	ENST00000348624	human	ensembl	74_37	+1	known	silent	c.999	p.D333	0.115	NULL	NULL	-	no_errors	AP5Z1	HGNC	ENSG00000242802				33	0	0	15	3	16.6667
ABCA13	0	genome.wustl.edu	37	7	48312524	48312524	+	Silent	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	7	48312524	48312524	C	T	SNP	ABCA13	ENST00000435803	human	ensembl	74_37	+1	known	silent	c.3261	p.F1087	0.988	NULL	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA13	HGNC	ENSG00000179869				37	0	0	14	7	33.3333
RADIL	0	genome.wustl.edu	37	7	4856942	4856942	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	7	4856942	4856942	G	A	SNP	RADIL	ENST00000536091	human	ensembl	74_37	-1	known	nonsense	c.1495	p.R499*	0.993	NULL	pfam_Ras-assoc,superfamily_SMAD_FHA_domain,smart_Ras-assoc,pfscan_Ras-assoc	-	no_errors	RADIL	HGNC	ENSG00000157927				82	0	0	35	13	27.0833
ACTB	0	genome.wustl.edu	37	7	5567755	5567755	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	7	5567755	5567755	G	A	SNP	ACTB	ENST00000331789	human	ensembl	74_37	-1	known	silent	c.864	p.D288	1.000	pfam_Actin-related,smart_Actin-related	pfam_Actin-related,smart_Actin-related,prints_Actin-related	-	no_errors	ACTB	HGNC	ENSG00000075624				357	0	0	173	76	30.5221
FKBP9L	0	genome.wustl.edu	37	7	55755504	55755504	+	RNA	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	7	55755504	55755504	G	A	SNP	FKBP9L	ENST00000455909	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	FKBP9L	HGNC	ENSG00000176826				94	0	0	35	25	41.6667
RNF216	0	genome.wustl.edu	37	7	5692060	5692060	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	7	5692060	5692060	T	C	SNP	RNF216	ENST00000389902	human	ensembl	74_37	-1	known	missense	c.2143	p.K715E	1.000	smart_Znf_C6HC	smart_Znf_C6HC	-	no_errors	RNF216	HGNC	ENSG00000011275				272	0	0	156	87	35.8025
PMS2	0	genome.wustl.edu	37	7	6027153	6027153	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	7	6027153	6027153	C	T	SNP	PMS2	ENST00000265849	human	ensembl	74_37	-1	known	missense	c.1243	p.V415M	0.003	NULL	pfam_MutL_C,pfam_DNA_mismatch_repair_C,pfam_HATPase_ATP-bd,superfamily_HATPase_ATP-bd,superfamily_Ribosomal_S5_D2-typ_fold,smart_MutL_C,tigrfam_DNA_mismatch_repair_N	-	no_errors	PMS2	HGNC	ENSG00000122512				140	0	0	60	31	34.0659
USP42	0	genome.wustl.edu	37	7	6189299	6189299	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	7	6189299	6189299	A	G	SNP	USP42	ENST00000306177	human	ensembl	74_37	+1	known	missense	c.1472	p.N491S	0.894	NULL	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	-	no_errors	USP42	HGNC	ENSG00000106346				211	0	0	132	13	8.96552
CCZ1B	0	genome.wustl.edu	37	7	6844665	6844665	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	7	6844665	6844665	T	A	SNP	CCZ1B	ENST00000316731	human	ensembl	74_37	-1	known	missense	c.1010	p.D337V	1.000	pfam_DUF1712_fun	pfam_DUF1712_fun	-	no_errors	CCZ1B	HGNC	ENSG00000146574				161	0	0	105	35	25
TYW1B	0	genome.wustl.edu	37	7	72178733	72178733	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	7	72178733	72178733	G	A	SNP	TYW1B	ENST00000343721	human	ensembl	74_37	-1	known	missense	c.94	p.R32C	1.000	pfam_rSAM	pfam_rSAM,pfam_tRNA_wybutosine-synth	-	no_errors	TYW1B	HGNC	ENSG00000254184				40	0	0	18	10	35.7143
GTF2IRD1	0	genome.wustl.edu	37	7	73933830	73933830	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	7	73933830	73933830	C	T	SNP	GTF2IRD1	ENST00000265755	human	ensembl	74_37	+1	known	missense	c.697	p.H233Y	0.998	pirsf_TF_II-I	pfam_GTF2I,superfamily_GTF2I,pirsf_TF_II-I,pfscan_GTF2I	-	no_errors	GTF2IRD1	HGNC	ENSG00000006704				235	0	0	109	65	37.3563
POR	0	genome.wustl.edu	37	7	75613126	75613126	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	7	75613126	75613126	A	G	SNP	POR	ENST00000461988	human	ensembl	74_37	+1	known	missense	c.1018	p.I340V	0.557	pfam_FAD-binding_1,superfamily_Riboflavin_synthase-like_b-brl	pfam_FAD-binding_1,pfam_Flavodoxin/NO_synth,pfam_OxRdtase_FAD/NAD-bd,superfamily_Riboflavin_synthase-like_b-brl,pfscan_Flavodoxin/NO_synth,prints_Flavoprot_Pyr_Nucl_cyt_Rdtase,prints_Flavdoxin	-	no_errors	POR	HGNC	ENSG00000127948				39	0	0	25	8	24.2424
POR	0	genome.wustl.edu	37	7	75614412	75614412	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	7	75614412	75614412	C	T	SNP	POR	ENST00000461988	human	ensembl	74_37	+1	known	missense	c.1285	p.H429Y	1.000	pfam_FAD-binding_1,superfamily_Riboflavin_synthase-like_b-brl	pfam_FAD-binding_1,pfam_Flavodoxin/NO_synth,pfam_OxRdtase_FAD/NAD-bd,superfamily_Riboflavin_synthase-like_b-brl,pfscan_Flavodoxin/NO_synth,prints_Flavoprot_Pyr_Nucl_cyt_Rdtase,prints_Flavdoxin	-	no_errors	POR	HGNC	ENSG00000127948				120	0	0	41	19	31.6667
PTPN12	0	genome.wustl.edu	37	7	77210806	77210806	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	7	77210806	77210806	G	A	SNP	PTPN12	ENST00000248594	human	ensembl	74_37	+1	known	missense	c.271	p.A91T	1.000	pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,pirsf_Ptpn_12,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pirsf_Ptpn_12,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPN12	HGNC	ENSG00000127947				46	0	0	27	6	18.1818
PHTF2	0	genome.wustl.edu	37	7	77567056	77567056	+	Silent	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	7	77567056	77567056	C	T	SNP	PHTF2	ENST00000248550	human	ensembl	74_37	+1	known	silent	c.1368	p.H456	0.997	NULL	pfam_TF_homeodomain_male	-	no_errors	PHTF2	HGNC	ENSG00000006576				28	0	0	11	4	26.6667
HEATR2	0	genome.wustl.edu	37	7	781046	781046	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	7	781046	781046	A	G	SNP	HEATR2	ENST00000297440	human	ensembl	74_37	+1	known	missense	c.968	p.D323G	1.000	superfamily_ARM-type_fold	pfam_HEAT,superfamily_ARM-type_fold,pfscan_HEAT_type_2	-	no_errors	HEATR2	HGNC	ENSG00000164818				19	0	0	11	3	21.4286
CD36	0	genome.wustl.edu	37	7	80295776	80295776	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	7	80295776	80295776	A	G	SNP	CD36	ENST00000309881	human	ensembl	74_37	+1	known	missense	c.719	p.E240G	0.000	pfam_CD36,prints_CD36_antigen	pfam_CD36,prints_CD36_antigen,prints_CD36	-	no_errors	CD36	HGNC	ENSG00000135218				120	0	0	94	11	10.4762
PCLO	0	genome.wustl.edu	37	7	82785212	82785212	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	7	82785212	82785212	A	T	SNP	PCLO	ENST00000333891	human	ensembl	74_37	-1	known	missense	c.745	p.S249T	0.922	NULL	pfam_Znf_piccolo,pfam_C2_dom,pfam_PDZ,superfamily_C2_dom,superfamily_PDZ,superfamily_Znf_FYVE_PHD,smart_PDZ,smart_C2_dom,pfscan_C2_dom,pfscan_PDZ	-	no_errors	PCLO	HGNC	ENSG00000186472				80	0	0	55	12	17.9104
SEMA3A	0	genome.wustl.edu	37	7	83758471	83758471	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	7	83758471	83758471	C	T	SNP	SEMA3A	ENST00000265362	human	ensembl	74_37	-1	known	missense	c.301	p.D101N	1.000	pfam_Semap_dom,superfamily_Semap_dom,smart_Semap_dom,pfscan_Semap_dom	pfam_Semap_dom,superfamily_Semap_dom,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_Ig_sub,pfscan_Semap_dom,pfscan_Ig-like_dom	-	no_errors	SEMA3A	HGNC	ENSG00000075213				197	0	0	143	19	11.7284
GRM3	0	genome.wustl.edu	37	7	86416344	86416344	+	Silent	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	7	86416344	86416344	T	C	SNP	GRM3	ENST00000361669	human	ensembl	74_37	+1	known	silent	c.1236	p.C412	0.907	pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_GPCR_3_9-Cys_dom,superfamily_Peripla_BP_I,pfscan_GPCR_3_C,prints_GPCR_3,prints_GPCR_3_mtglu_rcpt_3,prints_GPCR_3_mtglu_rcpt,prints_GPCR_3_mtglu_rcpt_2,prints_GPCR_3_GABA_rcpt_B	-	no_errors	GRM3	HGNC	ENSG00000198822				293	0	0	134	66	33
ADAM22	0	genome.wustl.edu	37	7	87780626	87780626	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	7	87780626	87780626	T	C	SNP	ADAM22	ENST00000265727	human	ensembl	74_37	+1	known	missense	c.1672	p.W558R	1.000	pfam_ADAM_Cys-rich,smart_ADAM_Cys-rich	pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_ADAM_Cys-rich,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_Peptidase_M12B,prints_Blood-coag_inhib_Disintegrin	-	no_errors	ADAM22	HGNC	ENSG00000008277				140	0	0	62	29	31.8681
SUN1	0	genome.wustl.edu	37	7	889172	889172	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	7	889172	889172	A	G	SNP	SUN1	ENST00000456758	human	ensembl	74_37	+1	known	missense	c.1046	p.Y349C	0.777	NULL	pfam_SUN1,pfam_Sad1_UNC_C	-	no_errors	SUN1	HGNC	ENSG00000164828				523	0	0	357	41	10.3015
C7orf63	0	genome.wustl.edu	37	7	89939383	89939383	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	7	89939383	89939383	T	C	SNP	C7orf63	ENST00000389297	human	ensembl	74_37	+1	known	missense	c.2657	p.V886A	0.988	NULL	superfamily_ARM-type_fold	-	no_errors	C7orf63	HGNC	ENSG00000105792				190	0	0	112	8	6.66667
CLDN12	0	genome.wustl.edu	37	7	90042450	90042450	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	7	90042450	90042450	G	T	SNP	CLDN12	ENST00000287916	human	ensembl	74_37	+1	known	missense	c.460	p.V154F	1.000	prints_Claudin12	prints_Claudin12	-	no_errors	CLDN12	HGNC	ENSG00000157224				346	0	0	169	62	26.8398
FZD1	0	genome.wustl.edu	37	7	90894774	90894774	+	Silent	SNP	C	C	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	7	90894774	90894774	C	A	SNP	FZD1	ENST00000287934	human	ensembl	74_37	+1	known	silent	c.579	p.R193	0.982	pfam_Frizzled_dom,superfamily_Frizzled_dom,smart_Frizzled_dom,pfscan_Frizzled_dom	pfam_Frizzled,pfam_Frizzled_dom,superfamily_Frizzled_dom,smart_Frizzled_dom,pfscan_Frizzled_dom,pfscan_GPCR_2-like,prints_Frizzled	-	no_errors	FZD1	HGNC	ENSG00000157240				216	1	0.460829	132	8	5.71429
AKAP9	0	genome.wustl.edu	37	7	91736658	91736658	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	7	91736658	91736658	A	G	SNP	AKAP9	ENST00000359028	human	ensembl	74_37	+1	known	missense	c.11480	p.Y3827C	0.968	NULL	pfam_PACT_domain,superfamily_Prefoldin,superfamily_YbaB	-	no_errors	AKAP9	HGNC	ENSG00000127914				258	0	0	140	59	29.6482
RBM48	0	genome.wustl.edu	37	7	92164313	92164313	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	7	92164313	92164313	A	G	SNP	RBM48	ENST00000481551	human	ensembl	74_37	+1	novel	missense	c.1046	p.K349R	0.001	NULL	NULL	-	no_errors	RBM48	HGNC	ENSG00000127993				55	0	0	33	4	10.8108
SAMD9	0	genome.wustl.edu	37	7	92732009	92732009	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	7	92732009	92732009	C	T	SNP	SAMD9	ENST00000379958	human	ensembl	74_37	-1	known	nonsense	c.3402	p.W1134*	0.042	NULL	pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,superfamily_P-loop_NTPase,smart_SAM,pfscan_SAM	-	no_errors	SAMD9	HGNC	ENSG00000205413				285	0	0	139	63	31.1881
SAMD9L	0	genome.wustl.edu	37	7	92761452	92761452	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	7	92761452	92761452	A	G	SNP	SAMD9L	ENST00000318238	human	ensembl	74_37	-1	known	missense	c.3833	p.L1278P	0.977	NULL	superfamily_SAM/pointed,superfamily_P-loop_NTPase,pfscan_SAM	-	no_errors	SAMD9L	HGNC	ENSG00000177409				123	1	0.806452	70	29	29.2929
SAMD9L	0	genome.wustl.edu	37	7	92763789	92763789	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	7	92763789	92763789	T	C	SNP	SAMD9L	ENST00000318238	human	ensembl	74_37	-1	known	missense	c.1496	p.N499S	1.000	NULL	superfamily_SAM/pointed,superfamily_P-loop_NTPase,pfscan_SAM	-	no_errors	SAMD9L	HGNC	ENSG00000177409				293	1	0.340136	161	71	30.6034
COL1A2	0	genome.wustl.edu	37	7	94057063	94057063	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	7	94057063	94057063	A	C	SNP	COL1A2	ENST00000297268	human	ensembl	74_37	+1	known	missense	c.3392	p.K1131T	1.000	NULL	pfam_Collagen,pfam_Fib_collagen_C,superfamily_Fibrinogen_a/b/g_C_dom,smart_Fib_collagen_C	-	no_errors	COL1A2	HGNC	ENSG00000164692				171	0	0	71	28	28.2828
SLC25A13	0	genome.wustl.edu	37	7	95751045	95751045	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	7	95751045	95751045	C	T	SNP	SLC25A13	ENST00000416240	human	ensembl	74_37	-1	known	missense	c.1766	p.R589Q	1.000	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_EF_hand_dom,pfscan_Mitochondrial_sb/sol_carrier,prints_Mit_carrier	-	no_errors	SLC25A13	HGNC	ENSG00000004864				282	0	0	147	53	26.5
SLC25A13	0	genome.wustl.edu	37	7	95864143	95864143	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	7	95864143	95864143	T	C	SNP	SLC25A13	ENST00000416240	human	ensembl	74_37	-1	known	missense	c.299	p.D100G	1.000	pfscan_EF_hand_dom	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_EF_hand_dom,pfscan_Mitochondrial_sb/sol_carrier,prints_Mit_carrier	-	no_errors	SLC25A13	HGNC	ENSG00000004864				107	0	0	60	9	13.0435
TECPR1	0	genome.wustl.edu	37	7	97866138	97866138	+	Silent	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	7	97866138	97866138	C	T	SNP	TECPR1	ENST00000379795	human	ensembl	74_37	-1	known	silent	c.1131	p.A377	0.000	NULL	pfam_Beta-propeller_rpt_TECPR,superfamily_RCC1/BLIP-II,smart_Beta-propeller_rpt_TECPR,smart_Peroxin/Ferlin	-	no_errors	TECPR1	HGNC	ENSG00000205356				18	0	0	8	3	27.2727
TRRAP	0	genome.wustl.edu	37	7	98552728	98552728	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	7	98552728	98552728	A	G	SNP	TRRAP	ENST00000359863	human	ensembl	74_37	+1	known	missense	c.5717	p.H1906R	1.000	superfamily_ARM-type_fold	pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	TRRAP	HGNC	ENSG00000196367				73	0	0	46	4	8
TRRAP	0	genome.wustl.edu	37	7	98589802	98589802	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	7	98589802	98589802	A	G	SNP	TRRAP	ENST00000359863	human	ensembl	74_37	+1	known	missense	c.9811	p.T3271A	1.000	pfscan_PIK_FAT	pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	TRRAP	HGNC	ENSG00000196367				557	2	0.357782	281	135	32.4519
ARPC1A	0	genome.wustl.edu	37	7	98957253	98957253	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	7	98957253	98957253	G	A	SNP	ARPC1A	ENST00000262942	human	ensembl	74_37	+1	known	missense	c.875	p.S292N	1.000	superfamily_WD40_repeat_dom,pirsf_ARPC2/3_su1	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pirsf_ARPC2/3_su1,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	ARPC1A	HGNC	ENSG00000241685				119	0	0	69	36	34.2857
CPSF4	0	genome.wustl.edu	37	7	99042427	99042427	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	7	99042427	99042427	T	C	SNP	CPSF4	ENST00000292476	human	ensembl	74_37	+1	known	missense	c.119	p.V40A	1.000	smart_Znf_CCCH	pfam_Znf_CCCH,pfam_Znf_CCHC,superfamily_Znf_CCHC,smart_Znf_CCCH,smart_Znf_CCHC,pfscan_Znf_CCHC	-	no_errors	CPSF4	HGNC	ENSG00000160917				665	1	0.15015	375	111	22.8395
ZSCAN25	0	genome.wustl.edu	37	7	99219142	99219142	+	Silent	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	7	99219142	99219142	C	T	SNP	ZSCAN25	ENST00000334715	human	ensembl	74_37	+1	known	silent	c.534	p.T178	0.199	NULL	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZSCAN25	HGNC	ENSG00000197037				51	0	0	34	16	32
CYP3A7	0	genome.wustl.edu	37	7	99305499	99305499	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	7	99305499	99305499	T	C	SNP	CYP3A7	ENST00000336374	human	ensembl	74_37	-1	known	missense	c.1352	p.N451S	0.946	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450,prints_Cyt_P450_B	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_CYP3A,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-II,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450,prints_Cyt_P450_B	-	no_errors	CYP3A7	HGNC	ENSG00000160870				334	0	0	236	25	9.57854
TAF6	0	genome.wustl.edu	37	7	99705994	99705994	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	7	99705994	99705994	G	A	SNP	TAF6	ENST00000344095	human	ensembl	74_37	-1	known	missense	c.1454	p.T485M	0.997	NULL	pfam_DUF1546,pfam_TAF_TATA-bd,superfamily_Histone-fold,superfamily_ARM-type_fold,smart_TAF_TATA-bd	-	no_errors	TAF6	HGNC	ENSG00000106290				145	0	0	59	39	39.7959
GAL3ST4	0	genome.wustl.edu	37	7	99757831	99757831	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	7	99757831	99757831	G	A	SNP	GAL3ST4	ENST00000360039	human	ensembl	74_37	-1	known	missense	c.1181	p.A394V	0.190	pfam_Gal-3-0_sulfotransfrase	pfam_Gal-3-0_sulfotransfrase,superfamily_P-loop_NTPase	-	no_errors	GAL3ST4	HGNC	ENSG00000197093				228	0	0	131	9	6.42857
NCALD	0	genome.wustl.edu	37	8	102731641	102731641	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	8	102731641	102731641	C	T	SNP	NCALD	ENST00000311028	human	ensembl	74_37	-1	known	missense	c.217	p.D73N	1.000	pfam_EF_hand_dom,smart_EF_hand_dom,pfscan_EF_hand_dom,prints_Recoverin	pfam_EF_hand_dom,smart_EF_hand_dom,pfscan_EF_hand_dom,prints_Recoverin	-	no_errors	NCALD	HGNC	ENSG00000104490				413	0	0	336	103	23.4624
UBR5	0	genome.wustl.edu	37	8	103287984	103287984	+	Silent	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	8	103287984	103287984	T	C	SNP	UBR5	ENST00000520539	human	ensembl	74_37	-1	known	silent	c.6582	p.E2194	1.000	NULL	pfam_HECT,pfam_E3_UbLigase_EDD_UBA,pfam_PABP_HYD,pfam_Znf_N-recognin,superfamily_HECT,superfamily_PABP_HYD,superfamily_RCC1/BLIP-II,smart_Znf_N-recognin_met,smart_PABP_HYD,smart_HECT,pfscan_HECT,pfscan_Znf_N-recognin	-	no_errors	UBR5	HGNC	ENSG00000104517				92	0	0	71	16	18.3908
UBR5	0	genome.wustl.edu	37	8	103323552	103323552	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	8	103323552	103323552	G	A	SNP	UBR5	ENST00000520539	human	ensembl	74_37	-1	known	missense	c.2591	p.A864V	1.000	NULL	pfam_HECT,pfam_E3_UbLigase_EDD_UBA,pfam_PABP_HYD,pfam_Znf_N-recognin,superfamily_HECT,superfamily_PABP_HYD,superfamily_RCC1/BLIP-II,smart_Znf_N-recognin_met,smart_PABP_HYD,smart_HECT,pfscan_HECT,pfscan_Znf_N-recognin	-	no_errors	UBR5	HGNC	ENSG00000104517				215	0	0	173	46	21.0046
UBR5	0	genome.wustl.edu	37	8	103324440	103324440	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	8	103324440	103324440	C	T	SNP	UBR5	ENST00000520539	human	ensembl	74_37	-1	known	missense	c.2185	p.D729N	1.000	NULL	pfam_HECT,pfam_E3_UbLigase_EDD_UBA,pfam_PABP_HYD,pfam_Znf_N-recognin,superfamily_HECT,superfamily_PABP_HYD,superfamily_RCC1/BLIP-II,smart_Znf_N-recognin_met,smart_PABP_HYD,smart_HECT,pfscan_HECT,pfscan_Znf_N-recognin	-	no_errors	UBR5	HGNC	ENSG00000104517				78	0	0	63	17	21.25
KLF10	0	genome.wustl.edu	37	8	103664435	103664435	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	8	103664435	103664435	T	A	SNP	KLF10	ENST00000285407	human	ensembl	74_37	-1	known	missense	c.227	p.N76I	0.021	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	KLF10	HGNC	ENSG00000155090				185	0	0	104	51	32.9032
LRP12	0	genome.wustl.edu	37	8	105509440	105509440	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	8	105509440	105509440	T	G	SNP	LRP12	ENST00000424843	human	ensembl	74_37	-1	known	missense	c.1283	p.N428T	1.000	pfam_LDrepeatLR_classA_rpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,pfscan_LDrepeatLR_classA_rpt	pfam_CUB_dom,pfam_LDrepeatLR_classA_rpt,superfamily_CUB_dom,superfamily_LDrepeatLR_classA_rpt,smart_CUB_dom,smart_LDrepeatLR_classA_rpt,pfscan_CUB_dom,pfscan_LDrepeatLR_classA_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP12	HGNC	ENSG00000147650				224	0	0	182	14	7.14286
OXR1	0	genome.wustl.edu	37	8	107695466	107695466	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	8	107695466	107695466	T	C	SNP	OXR1	ENST00000442977	human	ensembl	74_37	+1	known	missense	c.346	p.F116L	1.000	pfam_LysM_dom,smart_LysM_dom	pfam_TLDc,pfam_LysM_dom,pfam_GRAM,smart_LysM_dom,smart_TLDc	-	no_errors	OXR1	HGNC	ENSG00000164830				97	0	0	93	11	10.5769
OXR1	0	genome.wustl.edu	37	8	107719150	107719150	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	8	107719150	107719150	T	A	SNP	OXR1	ENST00000442977	human	ensembl	74_37	+1	known	missense	c.1404	p.N468K	0.037	NULL	pfam_TLDc,pfam_LysM_dom,pfam_GRAM,smart_LysM_dom,smart_TLDc	-	no_errors	OXR1	HGNC	ENSG00000164830				119	0	0	88	6	6.38298
XKR6	0	genome.wustl.edu	37	8	10782233	10782233	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	8	10782233	10782233	C	T	SNP	XKR6	ENST00000416569	human	ensembl	74_37	-1	known	missense	c.872	p.R291H	1.000	pfam_Transport_prot_XK	pfam_Transport_prot_XK	-	no_errors	XKR6	HGNC	ENSG00000171044				158	0	0	106	24	18.4615
ENY2	0	genome.wustl.edu	37	8	110348433	110348433	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	8	110348433	110348433	G	A	SNP	ENY2	ENST00000521688	human	ensembl	74_37	+1	known	missense	c.83	p.R28H	1.000	pfam_TF_enhancer_of_yellow_2	pfam_TF_enhancer_of_yellow_2	-	no_errors	ENY2	HGNC	ENSG00000120533				71	0	0	39	13	25
PKHD1L1	0	genome.wustl.edu	37	8	110394751	110394751	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	8	110394751	110394751	A	G	SNP	PKHD1L1	ENST00000378402	human	ensembl	74_37	+1	known	missense	c.368	p.E123G	0.976	superfamily_Ig_E-set,smart_IPT	pfam_IPT,pfam_G8_domain,pfam_PA14,superfamily_Ig_E-set,superfamily_Pectin_lyase_fold/virulence,superfamily_Cupredoxin,smart_IPT,smart_PA14,smart_PbH1	-	no_errors	PKHD1L1	HGNC	ENSG00000205038				176	0	0	129	42	24.5614
CSMD3	0	genome.wustl.edu	37	8	113237026	113237026	+	Silent	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	8	113237026	113237026	A	G	SNP	CSMD3	ENST00000297405	human	ensembl	74_37	-1	known	silent	c.11098	p.L3700	1.000	NULL	pfam_CUB_dom,pfam_Sushi_SCR_CCP,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_CUB_dom,smart_Sushi_SCR_CCP,pfscan_CUB_dom,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD3	HGNC	ENSG00000164796				314	0	0	151	54	26.3415
CSMD3	0	genome.wustl.edu	37	8	113237134	113237134	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	8	113237134	113237134	C	A	SNP	CSMD3	ENST00000297405	human	ensembl	74_37	-1	known	nonsense	c.10990	p.G3664*	1.000	NULL	pfam_CUB_dom,pfam_Sushi_SCR_CCP,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_CUB_dom,smart_Sushi_SCR_CCP,pfscan_CUB_dom,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD3	HGNC	ENSG00000164796				248	0	0	137	46	25.1366
CSMD3	0	genome.wustl.edu	37	8	113259321	113259321	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	8	113259321	113259321	G	T	SNP	CSMD3	ENST00000297405	human	ensembl	74_37	-1	known	missense	c.10150	p.L3384I	1.000	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_CUB_dom,pfam_Sushi_SCR_CCP,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_CUB_dom,smart_Sushi_SCR_CCP,pfscan_CUB_dom,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD3	HGNC	ENSG00000164796				103	0	0	55	22	28.5714
CSMD3	0	genome.wustl.edu	37	8	114111072	114111072	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	8	114111072	114111072	T	C	SNP	CSMD3	ENST00000297405	human	ensembl	74_37	-1	known	missense	c.830	p.D277G	1.000	pfam_CUB_dom,superfamily_CUB_dom,smart_CUB_dom,pfscan_CUB_dom	pfam_CUB_dom,pfam_Sushi_SCR_CCP,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_CUB_dom,smart_Sushi_SCR_CCP,pfscan_CUB_dom,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD3	HGNC	ENSG00000164796				104	1	0.952381	89	18	16.8224
NEIL2	0	genome.wustl.edu	37	8	11637208	11637208	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	8	11637208	11637208	G	A	SNP	NEIL2	ENST00000284503	human	ensembl	74_37	+1	known	silent	c.240	p.K80	0.000	pfam_DNA_glycosylase/AP_lyase_cat,pfscan_DNA_glycosylase/AP_lyase_cat	pfam_DNA_glyclase/AP_lyase_DNA-bd,pfam_DNA_glycosylase/AP_lyase_cat,superfamily_Ribosomal_S13-like_H2TH,pfscan_Znf_DNA_glyclase/AP_lyase,pfscan_DNA_glycosylase/AP_lyase_cat	-	no_errors	NEIL2	HGNC	ENSG00000154328				288	1	0.346021	225	63	21.875
NEIL2	0	genome.wustl.edu	37	8	11637331	11637331	+	Silent	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	8	11637331	11637331	C	T	SNP	NEIL2	ENST00000284503	human	ensembl	74_37	+1	known	silent	c.363	p.D121	0.000	pfam_DNA_glycosylase/AP_lyase_cat,pfscan_DNA_glycosylase/AP_lyase_cat	pfam_DNA_glyclase/AP_lyase_DNA-bd,pfam_DNA_glycosylase/AP_lyase_cat,superfamily_Ribosomal_S13-like_H2TH,pfscan_Znf_DNA_glyclase/AP_lyase,pfscan_DNA_glycosylase/AP_lyase_cat	-	no_errors	NEIL2	HGNC	ENSG00000154328				193	0	0	138	43	23.7569
USP17L2	0	genome.wustl.edu	37	8	11995417	11995417	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	8	11995417	11995417	C	A	SNP	USP17L2	ENST00000333796	human	ensembl	74_37	-1	known	missense	c.853	p.D285Y	0.025	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	pfam_Peptidase_C19/C67,pfam_HABP4_PAIRBP1-bd,pfscan_Peptidase_C19/C67	-	no_errors	USP17L2	HGNC	ENSG00000223443				248	0	0	269	25	8.5034
TAF2	0	genome.wustl.edu	37	8	120793304	120793304	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	8	120793304	120793304	A	G	SNP	TAF2	ENST00000378164	human	ensembl	74_37	-1	known	missense	c.2242	p.F748L	1.000	superfamily_ARM-type_fold	pfam_Peptidase_M1_N,superfamily_ARM-type_fold	-	no_errors	TAF2	HGNC	ENSG00000064313				66	0	0	56	13	18.8406
DEPTOR	0	genome.wustl.edu	37	8	120940664	120940664	+	Silent	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	8	120940664	120940664	T	C	SNP	DEPTOR	ENST00000286234	human	ensembl	74_37	+1	known	silent	c.147	p.V49	0.988	smart_DEP_dom,pfscan_DEP_dom	pfam_DEP_dom,superfamily_PDZ,smart_DEP_dom,smart_PDZ,pfscan_DEP_dom,pfscan_PDZ	-	no_errors	DEPTOR	HGNC	ENSG00000155792				250	0	0	201	18	8.21918
DEPTOR	0	genome.wustl.edu	37	8	120940800	120940800	+	Silent	SNP	C	C	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	8	120940800	120940800	C	A	SNP	DEPTOR	ENST00000286234	human	ensembl	74_37	+1	known	silent	c.283	p.R95	1.000	pfam_DEP_dom,smart_DEP_dom,pfscan_DEP_dom	pfam_DEP_dom,superfamily_PDZ,smart_DEP_dom,smart_PDZ,pfscan_DEP_dom,pfscan_PDZ	-	no_errors	DEPTOR	HGNC	ENSG00000155792				186	0	0	131	35	21.0843
COL14A1	0	genome.wustl.edu	37	8	121256232	121256232	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	8	121256232	121256232	G	A	SNP	COL14A1	ENST00000297848	human	ensembl	74_37	+1	known	missense	c.2464	p.A822T	0.568	superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_VWF_A,pfam_Fibronectin_type3,pfam_Collagen,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_VWF_A,smart_Laminin_G,pfscan_Fibronectin_type3,pfscan_VWF_A	-	no_errors	COL14A1	HGNC	ENSG00000187955				228	0	0	163	54	24.8848
FAM86B2	0	genome.wustl.edu	37	8	12285159	12285159	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	8	12285159	12285159	G	T	SNP	FAM86B2	ENST00000393715	human	ensembl	74_37	-1	known	missense	c.215	p.P72H	0.319	NULL	NULL	-	no_errors	FAM86B2	HGNC	ENSG00000145002				113	0	0	105	24	18.6047
ZHX2	0	genome.wustl.edu	37	8	123964414	123964414	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	8	123964414	123964414	A	G	SNP	ZHX2	ENST00000314393	human	ensembl	74_37	+1	known	missense	c.664	p.T222A	0.916	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	ZHX2	HGNC	ENSG00000178764				250	0	0	224	13	5.48523
FBXO32	0	genome.wustl.edu	37	8	124516885	124516885	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	8	124516885	124516885	T	C	SNP	FBXO32	ENST00000517956	human	ensembl	74_37	-1	known	missense	c.937	p.T313A	1.000	superfamily_F-box_dom	superfamily_F-box_dom	-	no_errors	FBXO32	HGNC	ENSG00000156804				109	0	0	109	8	6.83761
KIAA1456	0	genome.wustl.edu	37	8	12878636	12878636	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	8	12878636	12878636	C	T	SNP	KIAA1456	ENST00000524591	human	ensembl	74_37	+1	known	missense	c.448	p.H150Y	0.544	NULL	pfam_Methyltransf_11,pfam_Methyltransf_12,pfam_UbiE/COQ5_MeTrFase,pfam_Methyltransferase-rel	-	no_errors	KIAA1456	HGNC	ENSG00000250305				54	0	0	29	13	30.9524
GSDMC	0	genome.wustl.edu	37	8	130763802	130763802	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	8	130763802	130763802	T	A	SNP	GSDMC	ENST00000276708	human	ensembl	74_37	-1	known	missense	c.929	p.E310V	0.000	pfam_Gasdermin	pfam_Gasdermin	-	no_errors	GSDMC	HGNC	ENSG00000147697				178	0	0	144	9	5.88235
ADCY8	0	genome.wustl.edu	37	8	131848574	131848574	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	8	131848574	131848574	G	A	SNP	ADCY8	ENST00000286355	human	ensembl	74_37	-1	known	missense	c.2624	p.T875I	1.000	NULL	pfam_A/G_cyclase,pfam_Adenylate_cyclase-like,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY8	HGNC	ENSG00000155897				139	0	0	93	26	21.8487
TG	0	genome.wustl.edu	37	8	133894176	133894176	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	8	133894176	133894176	A	G	SNP	TG	ENST00000220616	human	ensembl	74_37	+1	known	missense	c.707	p.H236R	0.993	superfamily_Thyroglobulin_1,pirsf_Thyroglobulin,pfscan_Thyroglobulin_1	pfam_Thyroglobulin_1,pfam_CarbesteraseB,pfam_Tyr-kin_ephrin_A/B_rcpt-like,superfamily_Thyroglobulin_1,smart_Thyroglobulin_1,pirsf_Thyroglobulin,pfscan_Thyroglobulin_1	-	no_errors	TG	HGNC	ENSG00000042832				126	0	0	98	23	19.0083
TG	0	genome.wustl.edu	37	8	133906034	133906034	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	8	133906034	133906034	G	A	SNP	TG	ENST00000220616	human	ensembl	74_37	+1	known	missense	c.2861	p.G954E	0.967	pirsf_Thyroglobulin	pfam_Thyroglobulin_1,pfam_CarbesteraseB,pfam_Tyr-kin_ephrin_A/B_rcpt-like,superfamily_Thyroglobulin_1,smart_Thyroglobulin_1,pirsf_Thyroglobulin,pfscan_Thyroglobulin_1	-	no_errors	TG	HGNC	ENSG00000042832				248	0	0	210	12	5.40541
ZFAT	0	genome.wustl.edu	37	8	135614731	135614731	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	8	135614731	135614731	G	A	SNP	ZFAT	ENST00000377838	human	ensembl	74_37	-1	known	missense	c.1231	p.R411C	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZFAT	HGNC	ENSG00000066827				80	0	0	47	16	25.3968
ZFAT	0	genome.wustl.edu	37	8	135622749	135622749	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	8	135622749	135622749	T	C	SNP	ZFAT	ENST00000377838	human	ensembl	74_37	-1	known	missense	c.598	p.I200V	0.705	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZFAT	HGNC	ENSG00000066827				140	0	0	100	30	23.0769
FAM135B	0	genome.wustl.edu	37	8	139153555	139153555	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	8	139153555	139153555	A	G	SNP	FAM135B	ENST00000395297	human	ensembl	74_37	-1	known	missense	c.3676	p.S1226P	0.997	pfam_DUF676_lipase-like,pfam_PGAP1-like	pfam_DUF676_lipase-like,pfam_DUF3657,pfam_PGAP1-like	-	no_errors	FAM135B	HGNC	ENSG00000147724				163	0	0	141	30	17.5439
SLC45A4	0	genome.wustl.edu	37	8	142225875	142225875	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	8	142225875	142225875	A	G	SNP	SLC45A4	ENST00000517878	human	ensembl	74_37	-1	known	missense	c.1924	p.Y642H	1.000	superfamily_MFS_dom_general_subst_transpt	superfamily_MFS_dom_general_subst_transpt	-	no_errors	SLC45A4	HGNC	ENSG00000022567				110	0	0	145	14	8.80503
TSNARE1	0	genome.wustl.edu	37	8	143395755	143395755	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	8	143395755	143395755	C	T	SNP	TSNARE1	ENST00000307180	human	ensembl	74_37	-1	known	missense	c.1121	p.G374D	0.001	superfamily_t-SNARE	pfam_T_SNARE_dom,superfamily_t-SNARE,smart_Syntaxin_N,smart_T_SNARE_dom,pfscan_T_SNARE_dom	-	no_errors	TSNARE1	HGNC	ENSG00000171045				46	0	0	30	3	9.09091
BAI1	0	genome.wustl.edu	37	8	143623648	143623648	+	Silent	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	8	143623648	143623648	C	T	SNP	BAI1	ENST00000323289	human	ensembl	74_37	+1	known	silent	c.4053	p.A1351	0.993	NULL	pfam_GPCR_2_secretin-like,pfam_Thrombospondin_1_rpt,pfam_DUF3497,pfam_GPS_dom,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,smart_GPCR_2_extracellular_dom,smart_GPS_dom,prints_GPCR_2_brain-spec_angio_inhib,prints_GPCR_2_secretin-like,pfscan_GPS_dom,pfscan_Thrombospondin_1_rpt,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like	-	no_errors	BAI1	HGNC	ENSG00000181790				101	0	0	65	19	22.619
ZC3H3	0	genome.wustl.edu	37	8	144557662	144557662	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	8	144557662	144557662	G	A	SNP	ZC3H3	ENST00000262577	human	ensembl	74_37	-1	known	silent	c.1809	p.C603	0.983	NULL	pfam_Znf_CCCH,smart_Znf_CCCH	-	no_errors	ZC3H3	HGNC	ENSG00000014164				39	0	0	32	12	27.2727
FAM83H	0	genome.wustl.edu	37	8	144810850	144810850	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	8	144810850	144810850	C	T	SNP	FAM83H	ENST00000388913	human	ensembl	74_37	-1	known	missense	c.781	p.V261M	1.000	pfam_DUF1669	pfam_DUF1669	-	no_errors	FAM83H	HGNC	ENSG00000180921				85	0	0	49	19	27.9412
EPPK1	0	genome.wustl.edu	37	8	144945175	144945175	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	8	144945175	144945175	G	A	SNP	EPPK1	ENST00000525985	human	ensembl	74_37	-1	known	silent	c.2247	p.F749	0.991	pfam_Plectin_repeat,smart_Plectin_repeat	pfam_Plectin_repeat,smart_Plectin_repeat	-	no_errors	EPPK1	HGNC	ENSG00000227184				281	1	0.35461	182	43	19.1111
OPLAH	0	genome.wustl.edu	37	8	145107434	145107434	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	8	145107434	145107434	G	A	SNP	OPLAH	ENST00000426825	human	ensembl	74_37	-1	known	missense	c.3221	p.A1074V	0.992	pfam_Hydantoinase_B	pfam_Hydantoinase_B,pfam_Hydantoinase_A,pfam_Hydant_A_N	-	no_errors	OPLAH	HGNC	ENSG00000178814				20	0	0	17	8	32
MAF1	0	genome.wustl.edu	37	8	145160998	145160998	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	8	145160998	145160998	G	A	SNP	MAF1	ENST00000322428	human	ensembl	74_37	+1	known	missense	c.232	p.G78S	0.980	pfam_Maf1,pirsf_Maf1	pfam_Maf1,pirsf_Maf1	-	no_errors	MAF1	HGNC	ENSG00000179632				194	0	0	174	45	20.5479
MROH1	0	genome.wustl.edu	37	8	145235329	145235329	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	8	145235329	145235329	G	A	SNP	MROH1	ENST00000326134	human	ensembl	74_37	+1	known	silent	c.465	p.A155	0.753	superfamily_ARM-type_fold	pfam_HEAT,superfamily_ARM-type_fold,pfscan_HEAT_type_2	-	no_errors	MROH1	HGNC	ENSG00000179832				133	0	0	114	37	24.5033
HSF1	0	genome.wustl.edu	37	8	145533580	145533580	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	8	145533580	145533580	G	A	SNP	HSF1	ENST00000528838	human	ensembl	74_37	+1	known	silent	c.486	p.K162	1.000	NULL	pfam_Vert_HSTF_C,pfam_HSF_DNA-bd,smart_HSF_DNA-bd,prints_HSF_DNA-bd	-	no_errors	HSF1	HGNC	ENSG00000185122				85	0	0	56	15	21.1268
FBXL6	0	genome.wustl.edu	37	8	145579642	145579642	+	Silent	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	8	145579642	145579642	T	C	SNP	FBXL6	ENST00000331890	human	ensembl	74_37	-1	known	silent	c.1458	p.T486	0.016	NULL	superfamily_F-box_dom,smart_Leu-rich_rpt_Cys-con_subtyp	-	no_errors	FBXL6	HGNC	ENSG00000182325				170	0	0	125	30	19.3548
SLC52A2	0	genome.wustl.edu	37	8	145583653	145583653	+	Silent	SNP	G	G	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	8	145583653	145583653	G	T	SNP	SLC52A2	ENST00000329994	human	ensembl	74_37	+1	known	silent	c.501	p.V167	0.987	NULL	pfam_Endogenous_retrovirus_rcpt	-	no_errors	SLC52A2	HGNC	ENSG00000185803				192	0	0	140	45	24.3243
CPSF1	0	genome.wustl.edu	37	8	145623173	145623173	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	8	145623173	145623173	T	C	SNP	CPSF1	ENST00000349769	human	ensembl	74_37	-1	known	missense	c.2069	p.H690R	1.000	NULL	pfam_Cleavage/polyA-sp_fac_asu_C	-	no_errors	CPSF1	HGNC	ENSG00000071894				139	1	0.714286	129	17	11.6438
CPSF1	0	genome.wustl.edu	37	8	145623272	145623272	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	8	145623272	145623272	A	G	SNP	CPSF1	ENST00000349769	human	ensembl	74_37	-1	known	missense	c.1970	p.V657A	1.000	NULL	pfam_Cleavage/polyA-sp_fac_asu_C	-	no_errors	CPSF1	HGNC	ENSG00000071894				150	0	0	118	20	14.4928
SLC39A4	0	genome.wustl.edu	37	8	145638262	145638262	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	8	145638262	145638262	C	T	SNP	SLC39A4	ENST00000301305	human	ensembl	74_37	-1	known	missense	c.1696	p.A566T	0.711	pfam_ZIP	pfam_ZIP	-	no_errors	SLC39A4	HGNC	ENSG00000147804				43	0	0	32	9	21.9512
RECQL4	0	genome.wustl.edu	37	8	145737617	145737617	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	8	145737617	145737617	T	C	SNP	RECQL4	ENST00000428558	human	ensembl	74_37	-1	known	missense	c.3146	p.D1049G	1.000	NULL	pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_DNA_rep_checkpnt_protein,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,tigrfam_DNA_helicase_ATP-dep_RecQ	-	no_errors	RECQL4	HGNC	ENSG00000160957				58	0	0	26	9	25.7143
DLGAP2	0	genome.wustl.edu	37	8	1497659	1497659	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	8	1497659	1497659	A	G	SNP	DLGAP2	ENST00000421627	human	ensembl	74_37	+1	known	missense	c.800	p.N267S	0.057	NULL	pfam_GKAP	-	no_errors	DLGAP2	HGNC	ENSG00000198010				179	0	0	122	30	19.7368
DLGAP2	0	genome.wustl.edu	37	8	1497743	1497743	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	8	1497743	1497743	C	T	SNP	DLGAP2	ENST00000421627	human	ensembl	74_37	+1	known	missense	c.884	p.T295M	0.999	NULL	pfam_GKAP	-	no_errors	DLGAP2	HGNC	ENSG00000198010				59	0	0	24	14	36.8421
TUSC3	0	genome.wustl.edu	37	8	15508249	15508249	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	8	15508249	15508249	T	G	SNP	TUSC3	ENST00000503731	human	ensembl	74_37	+1	known	missense	c.352	p.Y118D	1.000	pfam_Thioredoxin_domain,superfamily_Thioredoxin-like_fold	pfam_OligosaccharylTrfase_OST3/OST6,pfam_Thioredoxin_domain,superfamily_Thioredoxin-like_fold	-	no_errors	TUSC3	HGNC	ENSG00000104723				419	0	0	330	95	22.3529
DLGAP2	0	genome.wustl.edu	37	8	1649450	1649450	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	8	1649450	1649450	C	T	SNP	DLGAP2	ENST00000421627	human	ensembl	74_37	+1	known	missense	c.2806	p.R936C	1.000	pfam_GKAP	pfam_GKAP	-	no_errors	DLGAP2	HGNC	ENSG00000198010				11	0	0	9	3	25
ZDHHC2	0	genome.wustl.edu	37	8	17053124	17053124	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	8	17053124	17053124	A	G	SNP	ZDHHC2	ENST00000262096	human	ensembl	74_37	+1	known	missense	c.364	p.M122V	1.000	NULL	pfam_Znf_DHHC_palmitoyltrfase,superfamily_Plexin-like_fold,pfscan_Znf_DHHC_palmitoyltrfase	-	no_errors	ZDHHC2	HGNC	ENSG00000104219				103	0	0	77	21	21.4286
SLC7A2	0	genome.wustl.edu	37	8	17400829	17400829	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	8	17400829	17400829	C	T	SNP	SLC7A2	ENST00000004531	human	ensembl	74_37	+1	known	missense	c.101	p.S34L	0.000	NULL	pfam_AA-permease/SLC12A_dom,tigrfam_Cat_AA_permease	-	no_errors	SLC7A2	HGNC	ENSG00000003989				117	0	0	84	22	20.7547
MTUS1	0	genome.wustl.edu	37	8	17601244	17601244	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	8	17601244	17601244	A	G	SNP	MTUS1	ENST00000262102	human	ensembl	74_37	-1	known	missense	c.2156	p.L719S	0.005	NULL	superfamily_Ferritin-like_SF	-	no_errors	MTUS1	HGNC	ENSG00000129422				167	0	0	143	20	12.2699
PCM1	0	genome.wustl.edu	37	8	17810504	17810504	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	8	17810504	17810504	G	A	SNP	PCM1	ENST00000325083	human	ensembl	74_37	+1	known	missense	c.1097	p.R366K	1.000	NULL	NULL	-	no_errors	PCM1	HGNC	ENSG00000078674				39	0	0	19	6	24
CSGALNACT1	0	genome.wustl.edu	37	8	19363333	19363333	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	8	19363333	19363333	G	A	SNP	CSGALNACT1	ENST00000311540	human	ensembl	74_37	-1	known	missense	c.13	p.R5C	0.999	NULL	pfam_Chond_GalNAc	-	no_errors	CSGALNACT1	HGNC	ENSG00000147408				148	0	0	133	20	13.0719
LZTS1	0	genome.wustl.edu	37	8	20110740	20110740	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	8	20110740	20110740	G	A	SNP	LZTS1	ENST00000265801	human	ensembl	74_37	-1	known	silent	c.702	p.D234	0.361	NULL	NULL	-	no_errors	LZTS1	HGNC	ENSG00000061337				187	0	0	108	46	29.8701
XPO7	0	genome.wustl.edu	37	8	21833943	21833943	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	8	21833943	21833943	A	G	SNP	XPO7	ENST00000434536	human	ensembl	74_37	+1	known	missense	c.701	p.N234S	1.000	superfamily_ARM-type_fold	pfam_Importin-beta_N,superfamily_ARM-type_fold,smart_Importin-beta_N,pfscan_Importin-beta_N	-	no_errors	XPO7	HGNC	ENSG00000130227				287	0	0	252	18	6.66667
FGF17	0	genome.wustl.edu	37	8	21904139	21904139	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	8	21904139	21904139	G	A	SNP	FGF17	ENST00000359441	human	ensembl	74_37	+1	known	missense	c.352	p.G118R	1.000	pfam_Fibroblast_GF_fam,superfamily_Cytokine_IL1-like,smart_Fibroblast_GF_fam,prints_IL-1_fam/FGF_fam	pfam_Fibroblast_GF_fam,superfamily_Cytokine_IL1-like,smart_Fibroblast_GF_fam,prints_IL-1_fam/FGF_fam	-	no_errors	FGF17	HGNC	ENSG00000158815				76	0	0	54	15	21.7391
HR	0	genome.wustl.edu	37	8	21978590	21978590	+	Silent	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	8	21978590	21978590	C	T	SNP	HR	ENST00000381418	human	ensembl	74_37	-1	known	silent	c.2355	p.P785	0.928	NULL	pfam_JmjC_dom,smart_JmjC_dom,pfscan_JmjC_dom	-	no_errors	HR	HGNC	ENSG00000168453				162	1	0.613497	123	38	23.6025
ADAM7	0	genome.wustl.edu	37	8	24324356	24324356	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	8	24324356	24324356	T	C	SNP	ADAM7	ENST00000175238	human	ensembl	74_37	+1	known	missense	c.434	p.V145A	1.000	pfam_Peptidase_M12B_N	pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_ADAM_Cys-rich,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_Peptidase_M12B,prints_Blood-coag_inhib_Disintegrin	-	no_errors	ADAM7	HGNC	ENSG00000069206				131	0	0	109	35	24.3056
ADAM7	0	genome.wustl.edu	37	8	24350742	24350742	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	8	24350742	24350742	G	T	SNP	ADAM7	ENST00000175238	human	ensembl	74_37	+1	known	missense	c.1842	p.M614I	1.000	smart_ADAM_Cys-rich	pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_ADAM_Cys-rich,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_Peptidase_M12B,prints_Blood-coag_inhib_Disintegrin	-	no_errors	ADAM7	HGNC	ENSG00000069206				77	0	0	60	4	6.25
ADRA1A	0	genome.wustl.edu	37	8	26722095	26722095	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	8	26722095	26722095	G	A	SNP	ADRA1A	ENST00000380586	human	ensembl	74_37	-1	known	missense	c.392	p.P131L	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_ADRA1A_rcpt,prints_GPCR_Rhodpsn,prints_ADR_fam	-	no_errors	ADRA1A	HGNC	ENSG00000120907				161	0	0	87	32	26.8908
SCARA3	0	genome.wustl.edu	37	8	27507229	27507229	+	Silent	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	8	27507229	27507229	C	T	SNP	SCARA3	ENST00000301904	human	ensembl	74_37	+1	known	silent	c.18	p.A6	0.001	NULL	pfam_Collagen	-	no_errors	SCARA3	HGNC	ENSG00000168077				89	0	0	67	14	17.284
SCARA3	0	genome.wustl.edu	37	8	27516732	27516732	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	8	27516732	27516732	C	T	SNP	SCARA3	ENST00000301904	human	ensembl	74_37	+1	known	missense	c.1045	p.R349C	0.999	NULL	pfam_Collagen	-	no_errors	SCARA3	HGNC	ENSG00000168077				189	0	0	178	32	15.2381
NUGGC	0	genome.wustl.edu	37	8	27880923	27880923	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	8	27880923	27880923	C	T	SNP	NUGGC	ENST00000341513	human	ensembl	74_37	-1	known	missense	c.2302	p.A768T	0.640	NULL	pfam_Dynamin_GTPase,superfamily_P-loop_NTPase	-	no_errors	NUGGC	HGNC	ENSG00000189233				116	0	0	85	20	19.0476
RBPMS	0	genome.wustl.edu	37	8	30332344	30332344	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	8	30332344	30332344	A	G	SNP	RBPMS	ENST00000339877	human	ensembl	74_37	+1	known	missense	c.116	p.E39G	1.000	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBPMS	HGNC	ENSG00000157110				322	0	0	249	90	26.5487
PPP2CB	0	genome.wustl.edu	37	8	30657228	30657228	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	8	30657228	30657228	C	T	SNP	PPP2CB	ENST00000221138	human	ensembl	74_37	-1	known	missense	c.146	p.R49H	1.000	smart_Ser/Thr-sp_prot-phosphatase	pfam_PEstase_dom,smart_Ser/Thr-sp_prot-phosphatase,prints_Ser/Thr-sp_prot-phosphatase	-	no_errors	PPP2CB	HGNC	ENSG00000104695				280	0	0	235	50	17.5439
TEX15	0	genome.wustl.edu	37	8	30694355	30694355	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	8	30694355	30694355	T	C	SNP	TEX15	ENST00000256246	human	ensembl	74_37	-1	known	missense	c.8296	p.N2766D	0.002	NULL	NULL	-	no_errors	TEX15	HGNC	ENSG00000133863				265	0	0	215	72	25.0871
DUSP26	0	genome.wustl.edu	37	8	33454979	33454979	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	8	33454979	33454979	G	A	SNP	DUSP26	ENST00000256261	human	ensembl	74_37	-1	known	missense	c.55	p.R19W	1.000	NULL	pfam_Dual-sp_phosphatase_cat-dom,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Tyr/Dual-sp_Pase,pfscan_Dual-sp_phosphatase_subgr_cat,prints_Atypical_DUSP_famA,prints_Atypical_DUSP	-	no_errors	DUSP26	HGNC	ENSG00000133878				106	0	0	76	21	21.6495
UNC5D	0	genome.wustl.edu	37	8	35406931	35406931	+	Silent	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	8	35406931	35406931	C	T	SNP	UNC5D	ENST00000404895	human	ensembl	74_37	+1	known	silent	c.225	p.C75	1.000	NULL	pfam_ZU5,pfam_Ig_I-set,pfam_Thrombospondin_1_rpt,pfam_Death_domain,pfam_Immunoglobulin,superfamily_DEATH-like_dom,superfamily_Thrombospondin_1_rpt,smart_Ig_sub,smart_Ig_sub2,smart_Thrombospondin_1_rpt,smart_ZU5,smart_Death_domain,pfscan_Thrombospondin_1_rpt,pfscan_ZU5,pfscan_Ig-like_dom	-	no_errors	UNC5D	HGNC	ENSG00000156687				60	0	0	49	19	27.9412
KCNU1	0	genome.wustl.edu	37	8	36644862	36644862	+	Silent	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	8	36644862	36644862	A	G	SNP	KCNU1	ENST00000399881	human	ensembl	74_37	+1	known	silent	c.234	p.V78	0.000	NULL	pfam_K_chnl_Ca-activ_BK_asu,pfam_2pore_dom_K_chnl_dom,prints_K_chnl_Ca-activ_BK_asu	-	no_errors	KCNU1	HGNC	ENSG00000215262				44	0	0	23	6	20.6897
ZNF703	0	genome.wustl.edu	37	8	37556077	37556077	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	8	37556077	37556077	T	C	SNP	ZNF703	ENST00000331569	human	ensembl	74_37	+1	known	missense	c.1658	p.L553S	1.000	NULL	pfam_Tscrpt_rep_NocA-like,pfscan_Znf_C2H2	-	no_errors	ZNF703	HGNC	ENSG00000183779				45	0	0	46	4	8
GPR124	0	genome.wustl.edu	37	8	37696520	37696520	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	8	37696520	37696520	T	C	SNP	GPR124	ENST00000412232	human	ensembl	74_37	+1	known	missense	c.2306	p.L769P	1.000	pfscan_GPCR_2-like	pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_GPCR_2_extracellular_dom,pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,pfscan_GPS_dom,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,pfscan_Ig-like_dom	-	no_errors	GPR124	HGNC	ENSG00000020181				77	0	0	84	6	6.66667
RAB11FIP1	0	genome.wustl.edu	37	8	37729770	37729770	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	8	37729770	37729770	G	A	SNP	RAB11FIP1	ENST00000330843	human	ensembl	74_37	-1	known	silent	c.2550	p.D850	0.000	NULL	pfam_Rab-bd_FIP-RBD,pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	-	no_errors	RAB11FIP1	HGNC	ENSG00000156675				124	0	0	97	6	5.82524
WHSC1L1	0	genome.wustl.edu	37	8	38146075	38146075	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	8	38146075	38146075	T	C	SNP	WHSC1L1	ENST00000317025	human	ensembl	74_37	-1	known	missense	c.3431	p.Y1144C	1.000	smart_AWS,pfscan_SET_dom	pfam_PWWP_dom,pfam_SET_dom,superfamily_Znf_FYVE_PHD,smart_PWWP_dom,smart_Znf_PHD,smart_AWS,smart_SET_dom,smart_Post-SET_dom,pfscan_AWS,pfscan_PWWP_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger	-	no_errors	WHSC1L1	HGNC	ENSG00000147548				286	0	0	205	81	28.3217
ANK1	0	genome.wustl.edu	37	8	41542098	41542098	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	8	41542098	41542098	C	T	SNP	ANK1	ENST00000396942	human	ensembl	74_37	-1	known	missense	c.4501	p.D1501N	0.989	NULL	pfam_Ankyrin_rpt,pfam_ZU5,pfam_Death_domain,superfamily_Ankyrin_rpt-contain_dom,superfamily_DEATH-like_dom,smart_Ankyrin_rpt,smart_ZU5,smart_Death_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Death_domain,pfscan_ZU5,prints_Ankyrin_rpt	-	no_errors	ANK1	HGNC	ENSG00000029534				67	0	0	48	12	20
KAT6A	0	genome.wustl.edu	37	8	41798556	41798556	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	8	41798556	41798556	C	T	SNP	KAT6A	ENST00000265713	human	ensembl	74_37	-1	known	missense	c.2843	p.R948Q	1.000	NULL	pfam_MOZ_SAS,pfam_Znf_PHD-finger,superfamily_Acyl_CoA_acyltransferase,superfamily_Znf_FYVE_PHD,smart_Histone_H1/H5_H15,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	KAT6A	HGNC	ENSG00000083168				280	0	0	185	58	23.8683
HGSNAT	0	genome.wustl.edu	37	8	43048914	43048914	+	Silent	SNP	C	C	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	8	43048914	43048914	C	A	SNP	HGSNAT	ENST00000458501	human	ensembl	74_37	+1	known	silent	c.1476	p.T492	0.003	NULL	pfam_DUF1624	-	no_errors	HGSNAT	HGNC	ENSG00000165102				147	0	0	128	30	18.9873
ST18	0	genome.wustl.edu	37	8	53073967	53073967	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	8	53073967	53073967	A	T	SNP	ST18	ENST00000276480	human	ensembl	74_37	-1	known	missense	c.1562	p.V521E	0.839	pfam_Myelin_TF	pfam_Myelin_TF,pfam_Znf_C2HC	-	no_errors	ST18	HGNC	ENSG00000147488				292	0	0	232	58	20
ATP6V1H	0	genome.wustl.edu	37	8	54628439	54628439	+	RNA	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	8	54628439	54628439	T	C	SNP	ATP6V1H	ENST00000523899	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	ATP6V1H	HGNC	ENSG00000047249				18	0	0	6	5	45.4545
XKR4	0	genome.wustl.edu	37	8	56015361	56015361	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	8	56015361	56015361	C	T	SNP	XKR4	ENST00000327381	human	ensembl	74_37	+1	known	missense	c.313	p.R105W	0.997	NULL	pfam_Transport_prot_XK	-	no_errors	XKR4	HGNC	ENSG00000206579				73	0	0	46	17	26.9841
XKR4	0	genome.wustl.edu	37	8	56015787	56015787	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	8	56015787	56015787	T	C	SNP	XKR4	ENST00000327381	human	ensembl	74_37	+1	known	missense	c.739	p.S247P	1.000	pfam_Transport_prot_XK	pfam_Transport_prot_XK	-	no_errors	XKR4	HGNC	ENSG00000206579				120	0	0	106	24	18.4615
PLAG1	0	genome.wustl.edu	37	8	57078885	57078885	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	8	57078885	57078885	A	G	SNP	PLAG1	ENST00000316981	human	ensembl	74_37	-1	known	missense	c.1420	p.S474P	0.991	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	PLAG1	HGNC	ENSG00000181690				372	0	0	253	48	15.9468
PLAG1	0	genome.wustl.edu	37	8	57079206	57079206	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	8	57079206	57079206	C	T	SNP	PLAG1	ENST00000316981	human	ensembl	74_37	-1	known	missense	c.1099	p.V367M	0.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	PLAG1	HGNC	ENSG00000181690				243	1	0.409836	150	55	26.8293
PENK	0	genome.wustl.edu	37	8	57358316	57358316	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	8	57358316	57358316	T	C	SNP	PENK	ENST00000518770	human	ensembl	74_37	-1	putative	missense	c.197	p.Y66C	0.000	NULL	pfam_Opioid_neupept,prints_Proenkphlin_A	-	no_errors	PENK	HGNC	ENSG00000181195				76	0	0	49	15	23.4375
CYP7A1	0	genome.wustl.edu	37	8	59407183	59407183	+	Silent	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	8	59407183	59407183	T	C	SNP	CYP7A1	ENST00000301645	human	ensembl	74_37	-1	known	silent	c.921	p.A307	0.999	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_E_grp-I	-	no_errors	CYP7A1	HGNC	ENSG00000167910				151	0	0	158	10	5.95238
CHD7	0	genome.wustl.edu	37	8	61765496	61765496	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	8	61765496	61765496	A	G	SNP	CHD7	ENST00000423902	human	ensembl	74_37	+1	known	missense	c.6212	p.H2071R	1.000	NULL	pfam_SNF2_N,pfam_BRK_domain,pfam_Chromo_domain,pfam_Helicase_C,superfamily_P-loop_NTPase,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,smart_BRK_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD7	HGNC	ENSG00000171316				167	0	0	136	44	24.4444
MCPH1	0	genome.wustl.edu	37	8	6302632	6302632	+	Silent	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	8	6302632	6302632	C	T	SNP	MCPH1	ENST00000344683	human	ensembl	74_37	+1	known	silent	c.1389	p.C463	0.000	pfam_Microcephalin	pfam_Microcephalin,pfam_BRCT_dom,superfamily_BRCT_dom,smart_BRCT_dom,pfscan_BRCT_dom,prints_BRCA1	-	no_errors	MCPH1	HGNC	ENSG00000147316				164	0	0	120	33	21.5686
CRH	0	genome.wustl.edu	37	8	67089245	67089245	+	Silent	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	8	67089245	67089245	C	T	SNP	CRH	ENST00000276571	human	ensembl	74_37	-1	known	silent	c.468	p.E156	0.998	pfam_Corticotropin-releasing_factor,smart_Corticotropin-releasing_factor,prints_Urocortin_CRF	pfam_Corticotropin-releasing_factor,smart_Corticotropin-releasing_factor,prints_Urocortin_CRF	-	no_errors	CRH	HGNC	ENSG00000147571				57	0	0	39	13	25
MYBL1	0	genome.wustl.edu	37	8	67488460	67488460	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	8	67488460	67488460	T	C	SNP	MYBL1	ENST00000522677	human	ensembl	74_37	-1	known	missense	c.1252	p.K418E	1.000	NULL	pfam_C-myb_C,pfam_SANT/Myb,pfam_Tscrpt_reg_Wos2-domain,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	MYBL1	HGNC	ENSG00000185697				344	1	0.289855	322	38	10.5556
VCPIP1	0	genome.wustl.edu	37	8	67578127	67578127	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	8	67578127	67578127	A	G	SNP	VCPIP1	ENST00000310421	human	ensembl	74_37	-1	known	missense	c.1067	p.I356T	1.000	pfscan_OTU	pfam_OTU,pfscan_OTU	-	no_errors	VCPIP1	HGNC	ENSG00000175073				263	0	0	210	54	20.4545
CSPP1	0	genome.wustl.edu	37	8	68044279	68044279	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	8	68044279	68044279	G	A	SNP	CSPP1	ENST00000262210	human	ensembl	74_37	+1	known	silent	c.1776	p.Q592	0.916	NULL	NULL	-	no_errors	CSPP1	HGNC	ENSG00000104218				115	0	0	97	32	24.8062
CPA6	0	genome.wustl.edu	37	8	68334846	68334846	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	8	68334846	68334846	C	T	SNP	CPA6	ENST00000297770	human	ensembl	74_37	-1	known	missense	c.1207	p.G403R	1.000	pfam_Peptidase_M14,smart_Peptidase_M14	pfam_Peptidase_M14,pfam_Prot_inh_M14A,superfamily_Prot_inh_propept,smart_Peptidase_M14,prints_Peptidase_M14	-	no_errors	CPA6	HGNC	ENSG00000165078				244	0	0	153	58	27.4882
PREX2	0	genome.wustl.edu	37	8	69021847	69021847	+	Silent	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	8	69021847	69021847	T	C	SNP	PREX2	ENST00000288368	human	ensembl	74_37	+1	known	silent	c.3135	p.C1045	0.990	NULL	pfam_DH-domain,pfam_DEP_dom,pfam_PDZ,superfamily_DH-domain,superfamily_PDZ,smart_DH-domain,smart_Pleckstrin_homology,smart_DEP_dom,smart_PDZ,pfscan_DEP_dom,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PREX2	HGNC	ENSG00000046889				174	0	0	121	41	25.3086
SLCO5A1	0	genome.wustl.edu	37	8	70585127	70585127	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	8	70585127	70585127	C	T	SNP	SLCO5A1	ENST00000260126	human	ensembl	74_37	-1	known	missense	c.2524	p.A842T	0.000	NULL	pfam_OA_transporter,pfam_MFS,pfam_Kazal_dom,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_OA_transporter	-	no_errors	SLCO5A1	HGNC	ENSG00000137571				122	0	0	82	17	17.1717
SLCO5A1	0	genome.wustl.edu	37	8	70617453	70617453	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	8	70617453	70617453	C	T	SNP	SLCO5A1	ENST00000260126	human	ensembl	74_37	-1	known	missense	c.1435	p.V479I	1.000	pfam_OA_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_OA_transporter	pfam_OA_transporter,pfam_MFS,pfam_Kazal_dom,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_OA_transporter	-	no_errors	SLCO5A1	HGNC	ENSG00000137571				117	0	0	79	30	27.5229
NCOA2	0	genome.wustl.edu	37	8	71068739	71068739	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	8	71068739	71068739	C	T	SNP	NCOA2	ENST00000452400	human	ensembl	74_37	-1	known	missense	c.1861	p.V621M	0.083	pirsf_Nuclear_rcpt_coactivator	pfam_DUF1518,pfam_SRC-1,pfam_Nuc_rcpt_coact_Ncoa-typ,pfam_PAS_fold,superfamily_PAS,superfamily_Nuc_rcpt_coact,superfamily_bHLH_dom,smart_bHLH_dom,smart_PAS,pirsf_Nuclear_rcpt_coactivator,pfscan_PAS,pfscan_bHLH_dom	-	no_errors	NCOA2	HGNC	ENSG00000140396				219	0	0	181	36	16.5899
EYA1	0	genome.wustl.edu	37	8	72127938	72127938	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	8	72127938	72127938	T	G	SNP	EYA1	ENST00000340726	human	ensembl	74_37	-1	known	missense	c.1386	p.E462D	0.996	pfam_HAD-like_dom,superfamily_HAD-like_dom,tigrfam_EYA	pfam_HAD-like_dom,superfamily_HAD-like_dom,tigrfam_EYA	-	no_errors	EYA1	HGNC	ENSG00000104313				105	0	0	82	8	8.88889
MSC	0	genome.wustl.edu	37	8	72756065	72756065	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	8	72756065	72756065	G	A	SNP	MSC	ENST00000325509	human	ensembl	74_37	-1	known	missense	c.349	p.R117C	1.000	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	MSC	HGNC	ENSG00000178860				90	0	0	48	18	27.2727
TRPA1	0	genome.wustl.edu	37	8	72950278	72950278	+	Silent	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	8	72950278	72950278	A	G	SNP	TRPA1	ENST00000262209	human	ensembl	74_37	-1	known	silent	c.2325	p.I775	0.986	NULL	pfam_Ankyrin_rpt,pfam_Ion_trans_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	TRPA1	HGNC	ENSG00000104321				14	0	0	11	5	31.25
LOC100132891	0	genome.wustl.edu	37	8	72967644	72967644	+	RNA	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	8	72967644	72967644	A	G	SNP	LOC100132891	ENST00000457356	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RP11-383H13.1	Clone_based_vega_gene	ENSG00000235531				98	0	0	90	19	17.4312
TRPA1	0	genome.wustl.edu	37	8	72973946	72973946	+	Silent	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	8	72973946	72973946	C	T	SNP	TRPA1	ENST00000262209	human	ensembl	74_37	-1	known	silent	c.858	p.E286	0.998	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_Ion_trans_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	TRPA1	HGNC	ENSG00000104321				164	0	0	122	28	18.6667
TMEM70	0	genome.wustl.edu	37	8	74888567	74888567	+	Silent	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	8	74888567	74888567	C	T	SNP	TMEM70	ENST00000312184	human	ensembl	74_37	+1	known	silent	c.51	p.C17	0.000	NULL	pfam_DUF1301_TMEM70	-	no_errors	TMEM70	HGNC	ENSG00000175606				39	0	0	26	10	27.7778
JPH1	0	genome.wustl.edu	37	8	75227698	75227698	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	8	75227698	75227698	G	A	SNP	JPH1	ENST00000519947	human	ensembl	74_37	-1	known	missense	c.172	p.R58C	0.028	NULL	NULL	-	no_errors	JPH1	HGNC	ENSG00000104369				49	0	0	38	10	20.8333
GDAP1	0	genome.wustl.edu	37	8	75272475	75272475	+	Silent	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	8	75272475	75272475	T	C	SNP	GDAP1	ENST00000220822	human	ensembl	74_37	+1	known	silent	c.414	p.H138	0.998	NULL	pfam_Glutathione_S-Trfase_N,pfam_GST_C,superfamily_Thioredoxin-like_fold,superfamily_Glutathione-S-Trfase_C-like	-	no_errors	GDAP1	HGNC	ENSG00000104381				235	0	0	166	41	19.8068
ZFHX4	0	genome.wustl.edu	37	8	77616900	77616900	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	8	77616900	77616900	A	G	SNP	ZFHX4	ENST00000521891	human	ensembl	74_37	+1	known	missense	c.577	p.N193D	1.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Znf_C2H2-like,smart_Znf_U1,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	ZFHX4	HGNC	ENSG00000091656				88	0	0	44	13	22.807
FAM86B3P	0	genome.wustl.edu	37	8	8098907	8098907	+	RNA	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	8	8098907	8098907	G	A	SNP	FAM86B3P	ENST00000310542	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.993	-	-	-	no_errors	FAM86B3P	HGNC	ENSG00000173295				68	0	0	44	10	18.5185
CLDN23	0	genome.wustl.edu	37	8	8560311	8560311	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	8	8560311	8560311	T	C	SNP	CLDN23	ENST00000519106	human	ensembl	74_37	+1	known	missense	c.403	p.Y135H	1.000	pfam_PMP22/EMP/MP20/Claudin	pfam_PMP22/EMP/MP20/Claudin,prints_Claudin	-	no_errors	CLDN23	HGNC	ENSG00000253958				37	0	0	34	13	27.6596
DCAF4L2	0	genome.wustl.edu	37	8	88885724	88885724	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	8	88885724	88885724	A	G	SNP	DCAF4L2	ENST00000319675	human	ensembl	74_37	-1	known	missense	c.476	p.L159P	0.911	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DCAF4L2	HGNC	ENSG00000176566				186	0	0	119	47	28.3133
RBM12B	0	genome.wustl.edu	37	8	94748049	94748049	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	8	94748049	94748049	G	A	SNP	RBM12B	ENST00000399300	human	ensembl	74_37	-1	known	missense	c.590	p.A197V	1.000	smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBM12B	HGNC	ENSG00000183808				277	0	0	211	79	27.2414
CDH17	0	genome.wustl.edu	37	8	95178128	95178128	+	Silent	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	8	95178128	95178128	A	G	SNP	CDH17	ENST00000027335	human	ensembl	74_37	-1	known	silent	c.1143	p.I381	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH17	HGNC	ENSG00000079112				124	0	0	97	36	27.0677
KIAA1429	0	genome.wustl.edu	37	8	95556148	95556148	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	8	95556148	95556148	A	G	SNP	KIAA1429	ENST00000297591	human	ensembl	74_37	-1	known	missense	c.86	p.V29A	1.000	NULL	superfamily_ARM-type_fold	-	no_errors	KIAA1429	HGNC	ENSG00000164944				323	0	0	252	54	17.6471
DPY19L4	0	genome.wustl.edu	37	8	95782684	95782684	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	8	95782684	95782684	A	G	SNP	DPY19L4	ENST00000414645	human	ensembl	74_37	+1	known	missense	c.1339	p.K447E	0.602	pfam_Dpy-19	pfam_Dpy-19	-	no_errors	DPY19L4	HGNC	ENSG00000156162				94	0	0	49	28	36.3636
INTS8	0	genome.wustl.edu	37	8	95892454	95892454	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	8	95892454	95892454	T	C	SNP	INTS8	ENST00000523731	human	ensembl	74_37	+1	known	missense	c.2980	p.Y994H	1.000	NULL	NULL	-	no_errors	INTS8	HGNC	ENSG00000164941				69	0	0	96	8	7.69231
MATN2	0	genome.wustl.edu	37	8	98900443	98900443	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	8	98900443	98900443	C	T	SNP	MATN2	ENST00000254898	human	ensembl	74_37	+1	known	missense	c.115	p.R39W	0.492	NULL	pfam_VWF_A,pfam_EGF-like_Ca-bd_dom,pfam_EG-like_dom,pfam_Matrilin_coiled-coil_trimer,smart_VWF_A,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom,pfscan_VWF_A	-	no_errors	MATN2	HGNC	ENSG00000132561				41	0	0	19	9	32.1429
MATN2	0	genome.wustl.edu	37	8	99019731	99019731	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	8	99019731	99019731	A	G	SNP	MATN2	ENST00000254898	human	ensembl	74_37	+1	known	missense	c.1475	p.D492G	0.924	smart_EGF-like_Ca-bd_dom,smart_EG-like_dom	pfam_VWF_A,pfam_EGF-like_Ca-bd_dom,pfam_EG-like_dom,pfam_Matrilin_coiled-coil_trimer,smart_VWF_A,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom,pfscan_VWF_A	-	no_errors	MATN2	HGNC	ENSG00000132561				128	0	0	93	5	5.10204
CCDC180	0	genome.wustl.edu	37	9	100119941	100119941	+	Silent	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	9	100119941	100119941	A	G	SNP	CCDC180	ENST00000375202	human	ensembl	74_37	+1	known	silent	c.3429	p.L1143	0.998	NULL	NULL	-	no_errors	CCDC180	HGNC	ENSG00000197816				341	0	0	181	83	31.4394
ANP32B	0	genome.wustl.edu	37	9	100767349	100767349	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	9	100767349	100767349	A	G	SNP	ANP32B	ENST00000339399	human	ensembl	74_37	+1	known	missense	c.431	p.Y144C	1.000	smart_U2A'_phosphoprotein32A_C	smart_U2A'_phosphoprotein32A_C	-	no_errors	ANP32B	HGNC	ENSG00000136938				143	0	0	85	31	26.7241
TRIM14	0	genome.wustl.edu	37	9	100843480	100843480	+	RNA	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	9	100843480	100843480	T	C	SNP	TRIM14	ENST00000478530	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	TRIM14	HGNC	ENSG00000106785				32	0	0	10	5	33.3333
TBC1D2	0	genome.wustl.edu	37	9	100971115	100971115	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	9	100971115	100971115	C	T	SNP	TBC1D2	ENST00000375066	human	ensembl	74_37	-1	known	missense	c.1985	p.R662H	0.000	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Pleckstrin_homology,smart_Rab-GTPase-TBC_dom,pfscan_Pleckstrin_homology,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D2	HGNC	ENSG00000095383				127	0	0	70	35	33.3333
GABBR2	0	genome.wustl.edu	37	9	101243237	101243237	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	9	101243237	101243237	T	C	SNP	GABBR2	ENST00000259455	human	ensembl	74_37	-1	known	missense	c.775	p.M259V	0.998	pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I	pfam_GPCR_3_C,pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I,prints_GPCR_3_GABA_rcpt_B2,prints_GPCR_3_GABA_rcpt_B,prints_GPCR_3_GABA_rcpt_B1,prints_GPCR_3,pfscan_GPCR_3_C	-	no_errors	GABBR2	HGNC	ENSG00000136928				160	0	0	93	45	32.6087
COL15A1	0	genome.wustl.edu	37	9	101706341	101706341	+	RNA	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	9	101706341	101706341	G	A	SNP	COL15A1	ENST00000467052	human	ensembl	74_37	+1	putative	rna	NULL	NULL	0.193	-	-	-	no_errors	COL15A1	HGNC	ENSG00000204291				111	0	0	54	32	37.2093
TEX10	0	genome.wustl.edu	37	9	103111562	103111562	+	Silent	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	9	103111562	103111562	A	G	SNP	TEX10	ENST00000374902	human	ensembl	74_37	-1	known	silent	c.84	p.A28	0.994	NULL	pfam_IPI1/TEX10,superfamily_ARM-type_fold,pfscan_HEAT_type_2	-	no_errors	TEX10	HGNC	ENSG00000136891				60	0	0	36	21	36.8421
DMRT2	0	genome.wustl.edu	37	9	1055749	1055749	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	9	1055749	1055749	A	T	SNP	DMRT2	ENST00000259622	human	ensembl	74_37	+1	known	missense	c.656	p.Y219F	0.994	NULL	pfam_DM_DNA-bd,superfamily_DM_DNA-bd,smart_DM_DNA-bd,pfscan_DM_DNA-bd	-	no_errors	DMRT2	HGNC	ENSG00000173253				76	0	0	43	19	30.6452
OR13C5	0	genome.wustl.edu	37	9	107361324	107361324	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	9	107361324	107361324	A	G	SNP	OR13C5	ENST00000374779	human	ensembl	74_37	-1	known	missense	c.371	p.V124A	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR13C5	HGNC	ENSG00000255800				260	0	0	200	15	6.97674
OR13C2	0	genome.wustl.edu	37	9	107367363	107367363	+	Silent	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	9	107367363	107367363	C	T	SNP	OR13C2	ENST00000542196	human	ensembl	74_37	-1	known	silent	c.546	p.L182	0.093	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR13C2	HGNC	ENSG00000257019				346	0	0	157	54	25.5924
EPB41L4B	0	genome.wustl.edu	37	9	112027297	112027297	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	9	112027297	112027297	A	T	SNP	EPB41L4B	ENST00000374566	human	ensembl	74_37	-1	known	missense	c.541	p.F181I	1.000	pfam_FERM_central,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain	pfam_FERM_N,pfam_FERM_PH-like_C,pfam_FERM_central,pfam_FERM-adjacent,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain,prints_Band_41_fam,prints_Ez/rad/moesin_like	-	no_errors	EPB41L4B	HGNC	ENSG00000095203				78	0	0	43	8	15.6863
C9orf84	0	genome.wustl.edu	37	9	114538127	114538127	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	9	114538127	114538127	A	G	SNP	C9orf84	ENST00000318737	human	ensembl	74_37	-1	known	missense	c.194	p.V65A	0.249	NULL	superfamily_RuvA_2-like	-	no_errors	C9orf84	HGNC	ENSG00000165181				171	0	0	82	26	24.0741
PTBP3	0	genome.wustl.edu	37	9	114986168	114986168	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	9	114986168	114986168	T	C	SNP	PTBP3	ENST00000458258	human	ensembl	74_37	-1	known	missense	c.1640	p.H547R	1.000	smart_RRM_dom,pfscan_RRM_dom,tigrfam_HnRNP-L_PTB	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,tigrfam_HnRNP-L_PTB	-	no_errors	PTBP3	HGNC	ENSG00000119314				319	0	0	191	26	11.9816
ALAD	0	genome.wustl.edu	37	9	116153209	116153209	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	9	116153209	116153209	T	C	SNP	ALAD	ENST00000409155	human	ensembl	74_37	-1	known	missense	c.266	p.E89G	1.000	pfam_Porphobilinogen_synth,pirsf_Porphobilinogen_synth	pfam_Porphobilinogen_synth,pirsf_Porphobilinogen_synth,prints_Porphobilinogen_synth	-	no_errors	ALAD	HGNC	ENSG00000148218				102	0	0	76	6	7.31707
RGS3	0	genome.wustl.edu	37	9	116276764	116276764	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	9	116276764	116276764	T	C	SNP	RGS3	ENST00000350696	human	ensembl	74_37	+1	known	missense	c.1504	p.S502P	0.979	NULL	pfam_RGS_dom,pfam_C2_dom,pfam_PDZ,superfamily_Regulat_G_prot_signal_superfam,superfamily_C2_dom,superfamily_PDZ,smart_C2_dom,smart_PDZ,smart_Regulat_G_prot_signal_superfam,pfscan_C2_dom,pfscan_PDZ,pfscan_Regulat_G_prot_signal_superfam,prints_RGS_dom	-	no_errors	RGS3	HGNC	ENSG00000138835				128	0	0	93	6	6.06061
AMBP	0	genome.wustl.edu	37	9	116823776	116823776	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	9	116823776	116823776	A	G	SNP	AMBP	ENST00000265132	human	ensembl	74_37	-1	known	missense	c.781	p.Y261H	0.996	pfam_Prot_inh_Kunz-m,superfamily_Prot_inh_Kunz-m,smart_Prot_inh_Kunz-m,pfscan_Prot_inh_Kunz-m,prints_Prot_inh_Kunz-m	pfam_Prot_inh_Kunz-m,pfam_Lipocln_cytosolic_FA-bd_dom,superfamily_Calycin-like,superfamily_Prot_inh_Kunz-m,smart_Prot_inh_Kunz-m,pfscan_Prot_inh_Kunz-m,prints_A1-microglobln,prints_PstgldnD_synth,prints_Prot_inh_Kunz-m,prints_Lipocalin	-	no_errors	AMBP	HGNC	ENSG00000106927				198	0	0	100	58	36.7089
KIF12	0	genome.wustl.edu	37	9	116857556	116857556	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	9	116857556	116857556	G	A	SNP	KIF12	ENST00000374118	human	ensembl	74_37	-1	known	missense	c.538	p.R180W	0.998	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,prints_Kinesin_motor_dom	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF12	HGNC	ENSG00000136883				108	0	0	62	27	30.3371
C9orf91	0	genome.wustl.edu	37	9	117405489	117405489	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	9	117405489	117405489	G	A	SNP	C9orf91	ENST00000374049	human	ensembl	74_37	+1	known	missense	c.928	p.A310T	0.000	NULL	NULL	-	no_errors	C9orf91	HGNC	ENSG00000157693				218	0	0	92	46	33.3333
GSN	0	genome.wustl.edu	37	9	124064424	124064424	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	9	124064424	124064424	T	C	SNP	GSN	ENST00000373818	human	ensembl	74_37	+1	known	missense	c.328	p.Y110H	1.000	pfam_Gelsolin_dom,smart_Villin/Gelsolin	pfam_Gelsolin_dom,smart_Villin/Gelsolin,prints_Villin/Gelsolin	-	no_errors	GSN	HGNC	ENSG00000148180				166	1	0.598802	120	9	6.97674
PTGS1	0	genome.wustl.edu	37	9	125141137	125141137	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	9	125141137	125141137	T	C	SNP	PTGS1	ENST00000362012	human	ensembl	74_37	+1	known	missense	c.436	p.Y146H	1.000	pfam_Haem_peroxidase_animal,superfamily_Haem_peroxidase,pfscan_Haem_peroxidase_animal	pfam_Haem_peroxidase_animal,superfamily_Haem_peroxidase,pfscan_EG-like_dom,pfscan_Haem_peroxidase_animal,prints_Haem_peroxidase_animal_subgr	-	no_errors	PTGS1	HGNC	ENSG00000095303				93	0	0	76	10	11.6279
OR1L6	0	genome.wustl.edu	37	9	125512494	125512494	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	9	125512494	125512494	G	A	SNP	OR1L6	ENST00000373684	human	ensembl	74_37	+1	known	missense	c.476	p.R159Q	0.976	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR1L6	HGNC	ENSG00000171459				205	0	0	92	47	33.8129
OR1L6	0	genome.wustl.edu	37	9	125512544	125512544	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	9	125512544	125512544	C	T	SNP	OR1L6	ENST00000373684	human	ensembl	74_37	+1	known	missense	c.526	p.R176W	0.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR1L6	HGNC	ENSG00000171459				307	0	0	206	20	8.84956
PDCL	0	genome.wustl.edu	37	9	125582652	125582652	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	9	125582652	125582652	G	A	SNP	PDCL	ENST00000259467	human	ensembl	74_37	-1	known	silent	c.618	p.A206	0.000	pfam_Phosducin_thioredoxin-like_dom,superfamily_Thioredoxin-like_fold,prints_Phosducin	pfam_Phosducin_thioredoxin-like_dom,superfamily_Thioredoxin-like_fold,prints_Phosducin	-	no_errors	PDCL	HGNC	ENSG00000136940				128	0	0	65	7	9.72222
RC3H2	0	genome.wustl.edu	37	9	125621378	125621378	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	9	125621378	125621378	T	C	SNP	RC3H2	ENST00000357244	human	ensembl	74_37	-1	known	missense	c.1853	p.Y618C	1.000	NULL	pfam_Znf_CCCH,smart_Znf_RING,smart_Znf_CCCH,pfscan_Znf_RING	-	no_errors	RC3H2	HGNC	ENSG00000056586				45	0	0	33	3	8.33333
ZBTB6	0	genome.wustl.edu	37	9	125673698	125673698	+	Silent	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	9	125673698	125673698	A	G	SNP	ZBTB6	ENST00000373659	human	ensembl	74_37	-1	known	silent	c.654	p.C218	1.000	NULL	pfam_BTB_POZ,pfam_Znf_C2H2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB6	HGNC	ENSG00000186130				153	1	0.649351	68	24	26.087
DENND1A	0	genome.wustl.edu	37	9	126213008	126213008	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	9	126213008	126213008	C	A	SNP	DENND1A	ENST00000394219	human	ensembl	74_37	-1	known	missense	c.1224	p.M408I	1.000	NULL	pfam_DENN_dom,pfam_dDENN_dom,pfam_uDENN_dom,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom	-	no_errors	DENND1A	HGNC	ENSG00000119522				64	0	0	50	5	9.09091
LHX2	0	genome.wustl.edu	37	9	126777427	126777427	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	9	126777427	126777427	G	A	SNP	LHX2	ENST00000373615	human	ensembl	74_37	+1	known	missense	c.350	p.R117H	1.000	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	pfam_Znf_LIM,pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Znf_LIM,smart_Homeobox_dom,pfscan_Znf_LIM,pfscan_Homeobox_dom	-	no_errors	LHX2	HGNC	ENSG00000106689				229	1	0.434783	181	10	5.2356
WDR38	0	genome.wustl.edu	37	9	127618544	127618544	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	9	127618544	127618544	T	C	SNP	WDR38	ENST00000373574	human	ensembl	74_37	+1	known	missense	c.431	p.V144A	0.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	WDR38	HGNC	ENSG00000136918				119	0	0	58	4	6.45161
PPP6C	0	genome.wustl.edu	37	9	127920587	127920587	+	Silent	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	9	127920587	127920587	A	G	SNP	PPP6C	ENST00000451402	human	ensembl	74_37	-1	known	silent	c.423	p.P141	1.000	pfam_PEstase_dom,smart_Ser/Thr-sp_prot-phosphatase	pfam_PEstase_dom,smart_Ser/Thr-sp_prot-phosphatase,prints_Ser/Thr-sp_prot-phosphatase	-	no_errors	PPP6C	HGNC	ENSG00000119414				210	0	0	150	17	10.1796
GARNL3	0	genome.wustl.edu	37	9	130075748	130075748	+	Silent	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	9	130075748	130075748	C	T	SNP	GARNL3	ENST00000373387	human	ensembl	74_37	+1	known	silent	c.348	p.A116	0.967	NULL	pfam_Citron,pfam_Rap_GAP_dom,smart_Citron,pfscan_Rap_GAP_dom	-	no_errors	GARNL3	HGNC	ENSG00000136895				196	0	0	102	37	26.6187
GARNL3	0	genome.wustl.edu	37	9	130117639	130117639	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	9	130117639	130117639	G	A	SNP	GARNL3	ENST00000373387	human	ensembl	74_37	+1	known	missense	c.1823	p.R608Q	1.000	pfam_Citron,smart_Citron	pfam_Citron,pfam_Rap_GAP_dom,smart_Citron,pfscan_Rap_GAP_dom	-	no_errors	GARNL3	HGNC	ENSG00000136895				585	3	0.510204	322	145	31.0493
ZNF79	0	genome.wustl.edu	37	9	130206787	130206787	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	9	130206787	130206787	A	G	SNP	ZNF79	ENST00000342483	human	ensembl	74_37	+1	known	missense	c.808	p.T270A	0.999	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF79	HGNC	ENSG00000196152				208	0	0	126	7	5.26316
LRSAM1	0	genome.wustl.edu	37	9	130251732	130251732	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	9	130251732	130251732	C	T	SNP	LRSAM1	ENST00000300417	human	ensembl	74_37	+1	known	nonsense	c.1357	p.Q453*	1.000	NULL	pfam_Leu-rich_rpt,pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,superfamily_PTS_PEP_utilis_N,smart_Leu-rich_rpt_typical-subtyp,smart_SAM,pfscan_SAM,pfscan_Znf_RING	-	no_errors	LRSAM1	HGNC	ENSG00000148356				38	0	0	17	7	29.1667
FAM129B	0	genome.wustl.edu	37	9	130272565	130272565	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	9	130272565	130272565	G	A	SNP	FAM129B	ENST00000373312	human	ensembl	74_37	-1	known	missense	c.1021	p.P341S	1.000	NULL	pfscan_Pleckstrin_homology	-	no_errors	FAM129B	HGNC	ENSG00000136830				287	0	0	157	59	27.3148
FAM102A	0	genome.wustl.edu	37	9	130707135	130707135	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	9	130707135	130707135	G	A	SNP	FAM102A	ENST00000373095	human	ensembl	74_37	-1	known	silent	c.960	p.D320	0.998	NULL	pfam_NT-C2	-	no_errors	FAM102A	HGNC	ENSG00000167106				72	0	0	37	22	37.2881
FAM102A	0	genome.wustl.edu	37	9	130710444	130710444	+	Silent	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	9	130710444	130710444	C	T	SNP	FAM102A	ENST00000373095	human	ensembl	74_37	-1	known	silent	c.522	p.T174	0.954	NULL	pfam_NT-C2	-	no_errors	FAM102A	HGNC	ENSG00000167106				139	0	0	75	41	35.3448
DNM1	0	genome.wustl.edu	37	9	130980867	130980867	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	9	130980867	130980867	C	G	SNP	DNM1	ENST00000372923	human	ensembl	74_37	+1	known	missense	c.242	p.A81G	1.000	pfam_Dynamin_GTPase,superfamily_P-loop_NTPase,smart_Dynamin_GTPase	pfam_Dynamin_central,pfam_Dynamin_GTPase,pfam_GED,pfam_Pleckstrin_homology,superfamily_P-loop_NTPase,smart_Dynamin_GTPase,smart_Pleckstrin_homology,smart_GED,pfscan_Pleckstrin_homology,prints_Dynamin_SF	-	no_errors	DNM1	HGNC	ENSG00000106976				86	0	0	57	5	8.06452
SPTAN1	0	genome.wustl.edu	37	9	131349934	131349934	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	9	131349934	131349934	G	A	SNP	SPTAN1	ENST00000358161	human	ensembl	74_37	+1	known	missense	c.2828	p.G943D	1.000	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_EF-hand_Ca_insen,pfam_SH3_domain,pfam_EF_hand_dom,pfam_SH3_2,superfamily_SH3_domain,smart_Spectrin/alpha-actinin,smart_SH3_domain,smart_EF_hand_dom,pfscan_EF_hand_dom,pfscan_SH3_domain,prints_Spectrin_alpha_SH3,prints_SH3_domain	-	no_errors	SPTAN1	HGNC	ENSG00000197694				87	0	0	38	31	44.9275
NUP188	0	genome.wustl.edu	37	9	131745643	131745643	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	9	131745643	131745643	C	A	SNP	NUP188	ENST00000372577	human	ensembl	74_37	+1	known	missense	c.1868	p.A623D	1.000	pfam_Nucleoporin_Nup188	pfam_Nucleoporin_Nup188,superfamily_ARM-type_fold	-	no_errors	NUP188	HGNC	ENSG00000095319				227	0	0	154	10	6.09756
IER5L	0	genome.wustl.edu	37	9	131940298	131940298	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	9	131940298	131940298	T	C	SNP	IER5L	ENST00000372491	human	ensembl	74_37	-1	known	missense	c.34	p.S12G	1.000	pfam_IER	pfam_IER	-	no_errors	IER5L	HGNC	ENSG00000188483				21	0	0	9	5	35.7143
ASS1	0	genome.wustl.edu	37	9	133352330	133352330	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	9	133352330	133352330	G	A	SNP	ASS1	ENST00000352480	human	ensembl	74_37	+1	known	missense	c.670	p.E224K	1.000	pfam_Arginosuc_synth,tigrfam_Arginosuc_synth	pfam_Arginosuc_synth,pfam_QueC,tigrfam_Arginosuc_synth	-	no_errors	ASS1	HGNC	ENSG00000130707				289	0	0	163	71	30.3419
LAMC3	0	genome.wustl.edu	37	9	133952676	133952676	+	Silent	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	9	133952676	133952676	A	G	SNP	LAMC3	ENST00000361069	human	ensembl	74_37	+1	known	silent	c.3732	p.A1244	0.000	NULL	pfam_EGF_laminin,pfam_Laminin_N,pfam_Laminin_B_type_IV,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,smart_Laminin_B_subgr,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_N	-	no_errors	LAMC3	HGNC	ENSG00000050555				143	0	0	63	30	32.2581
NUP214	0	genome.wustl.edu	37	9	134020113	134020113	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	9	134020113	134020113	T	C	SNP	NUP214	ENST00000451030	human	ensembl	74_37	+1	known	missense	c.1741	p.S581P	0.685	NULL	smart_WD40_repeat	-	no_errors	NUP214	HGNC	ENSG00000126883				91	0	0	52	29	35.8025
NUP214	0	genome.wustl.edu	37	9	134073761	134073761	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	9	134073761	134073761	G	A	SNP	NUP214	ENST00000451030	human	ensembl	74_37	+1	known	missense	c.4883	p.G1628D	0.073	NULL	smart_WD40_repeat	-	no_errors	NUP214	HGNC	ENSG00000126883				317	0	0	209	17	7.52212
SETX	0	genome.wustl.edu	37	9	135140330	135140330	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	9	135140330	135140330	G	A	SNP	SETX	ENST00000372169	human	ensembl	74_37	-1	known	missense	c.7417	p.R2473C	0.997	NULL	superfamily_P-loop_NTPase	-	no_errors	SETX	HGNC	ENSG00000107290				265	0	0	124	58	31.8681
CEL	0	genome.wustl.edu	37	9	135942495	135942495	+	Silent	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	9	135942495	135942495	C	T	SNP	CEL	ENST00000372080	human	ensembl	74_37	+1	known	silent	c.807	p.C269	1.000	pfam_CarbesteraseB	pfam_CarbesteraseB,pfam_AB_hydrolase_3	-	no_errors	CEL	HGNC	ENSG00000170835				67	0	0	44	6	12
RPL7A	0	genome.wustl.edu	37	9	136217103	136217103	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	9	136217103	136217103	A	G	SNP	RPL7A	ENST00000323345	human	ensembl	74_37	+1	known	missense	c.424	p.T142A	1.000	pfam_Ribosomal_L7Ae/L30e/S12e/Gad45,prints_Ribosomal_L7A/L8,prints_Ribosomal_L7Ae/L8/Nhp2	pfam_Ribosomal_L7Ae/L30e/S12e/Gad45,prints_Ribosomal_L7A/L8,prints_Ribosomal_L7Ae/L8/Nhp2	-	no_errors	RPL7A	HGNC	ENSG00000148303				70	0	0	35	8	18.6047
FAM163B	0	genome.wustl.edu	37	9	136444295	136444295	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	9	136444295	136444295	C	T	SNP	FAM163B	ENST00000356873	human	ensembl	74_37	-1	known	missense	c.350	p.G117D	1.000	NULL	NULL	-	no_errors	FAM163B	HGNC	ENSG00000196990				16	0	0	6	4	40
VAV2	0	genome.wustl.edu	37	9	136640122	136640122	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	9	136640122	136640122	G	A	SNP	VAV2	ENST00000371850	human	ensembl	74_37	-1	known	silent	c.2070	p.H690	0.992	pfam_SH2,smart_SH2,pfscan_SH2	pfam_DH-domain,pfam_SH3_2,pfam_CAMSAP_CH,pfam_SH3_domain,pfam_SH2,pfam_CH-domain,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pleckstrin_homology,superfamily_DH-domain,superfamily_CH-domain,superfamily_SH3_domain,smart_CH-domain,smart_DH-domain,smart_Pleckstrin_homology,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_SH3_domain,smart_SH2,pfscan_CH-domain,pfscan_Pleckstrin_homology,pfscan_SH2,pfscan_SH3_domain,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_DH-domain,prints_SH2,prints_SH3_domain	-	no_errors	VAV2	HGNC	ENSG00000160293				45	0	0	31	12	27.907
VAV2	0	genome.wustl.edu	37	9	136671273	136671273	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	9	136671273	136671273	T	C	SNP	VAV2	ENST00000371850	human	ensembl	74_37	-1	known	missense	c.766	p.R256G	0.629	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_DH-domain	pfam_DH-domain,pfam_SH3_2,pfam_CAMSAP_CH,pfam_SH3_domain,pfam_SH2,pfam_CH-domain,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pleckstrin_homology,superfamily_DH-domain,superfamily_CH-domain,superfamily_SH3_domain,smart_CH-domain,smart_DH-domain,smart_Pleckstrin_homology,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_SH3_domain,smart_SH2,pfscan_CH-domain,pfscan_Pleckstrin_homology,pfscan_SH2,pfscan_SH3_domain,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_DH-domain,prints_SH2,prints_SH3_domain	-	no_errors	VAV2	HGNC	ENSG00000160293				35	0	0	22	5	18.5185
COL5A1	0	genome.wustl.edu	37	9	137623460	137623460	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	9	137623460	137623460	C	T	SNP	COL5A1	ENST00000371817	human	ensembl	74_37	+1	known	missense	c.1283	p.S428L	0.064	NULL	pfam_Collagen,pfam_Fib_collagen_C,pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,superfamily_Fibrinogen_a/b/g_C_dom,smart_Laminin_G,smart_Fib_collagen_C	-	no_errors	COL5A1	HGNC	ENSG00000130635				214	0	0	108	49	31.2102
GLT6D1	0	genome.wustl.edu	37	9	138516095	138516095	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	9	138516095	138516095	A	G	SNP	GLT6D1	ENST00000371763	human	ensembl	74_37	-1	known	missense	c.679	p.Y227H	0.740	pfam_Glyco_trans_6	pfam_Glyco_trans_6	-	no_errors	GLT6D1	HGNC	ENSG00000204007				230	0	0	139	15	9.74026
KCNT1	0	genome.wustl.edu	37	9	138594206	138594206	+	Silent	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	9	138594206	138594206	C	T	SNP	KCNT1	ENST00000298480	human	ensembl	74_37	+1	known	silent	c.102	p.C34	0.046	NULL	pfam_K_chnl_Ca-activ_BK_asu,pfam_2pore_dom_K_chnl_dom	-	no_errors	KCNT1	HGNC	ENSG00000107147				73	0	0	43	18	29.5082
KCNT1	0	genome.wustl.edu	37	9	138662709	138662709	+	Silent	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	9	138662709	138662709	C	T	SNP	KCNT1	ENST00000298480	human	ensembl	74_37	+1	known	silent	c.1776	p.G592	0.953	pfam_K_chnl_Ca-activ_BK_asu	pfam_K_chnl_Ca-activ_BK_asu,pfam_2pore_dom_K_chnl_dom	-	no_errors	KCNT1	HGNC	ENSG00000107147				13	0	0	4	3	42.8571
KCNT1	0	genome.wustl.edu	37	9	138676625	138676625	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	9	138676625	138676625	G	A	SNP	KCNT1	ENST00000298480	human	ensembl	74_37	+1	known	missense	c.3046	p.D1016N	1.000	NULL	pfam_K_chnl_Ca-activ_BK_asu,pfam_2pore_dom_K_chnl_dom	-	no_errors	KCNT1	HGNC	ENSG00000107147				164	1	0.606061	83	50	37.594
QSOX2	0	genome.wustl.edu	37	9	139100687	139100687	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	9	139100687	139100687	T	A	SNP	QSOX2	ENST00000358701	human	ensembl	74_37	-1	known	missense	c.1984	p.S662C	1.000	NULL	pfam_ERV/ALR_sulphydryl_oxidase,pfam_Thioredoxin_domain,superfamily_ERV/ALR_sulphydryl_oxidase,superfamily_Thioredoxin-like_fold	-	no_errors	QSOX2	HGNC	ENSG00000165661				352	0	0	136	93	40.6114
NOTCH1	0	genome.wustl.edu	37	9	139395173	139395173	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	9	139395173	139395173	T	C	SNP	NOTCH1	ENST00000277541	human	ensembl	74_37	-1	known	missense	c.5765	p.N1922S	1.000	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pirsf_Notch,pfscan_Ankyrin_rpt-contain_dom	pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,pfam_Ankyrin_rpt,pfam_EGF_extracell,pfam_Notch_NOD_dom,pfam_DUF3454_notch,pfam_Notch_NODP_dom,superfamily_Ankyrin_rpt-contain_dom,superfamily_Notch_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Notch_dom,smart_Ankyrin_rpt,pirsf_Notch,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_EG-like_dom,pfscan_Notch_dom,prints_Notch_1,prints_Notch_dom	-	no_errors	NOTCH1	HGNC	ENSG00000148400				314	0	0	207	14	6.33484
NOTCH1	0	genome.wustl.edu	37	9	139397686	139397686	+	Silent	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	9	139397686	139397686	C	T	SNP	NOTCH1	ENST00000277541	human	ensembl	74_37	-1	known	silent	c.5115	p.A1705	0.116	pfam_Notch_NODP_dom,pirsf_Notch	pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,pfam_Ankyrin_rpt,pfam_EGF_extracell,pfam_Notch_NOD_dom,pfam_DUF3454_notch,pfam_Notch_NODP_dom,superfamily_Ankyrin_rpt-contain_dom,superfamily_Notch_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Notch_dom,smart_Ankyrin_rpt,pirsf_Notch,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_EG-like_dom,pfscan_Notch_dom,prints_Notch_1,prints_Notch_dom	-	no_errors	NOTCH1	HGNC	ENSG00000148400				73	0	0	34	12	26.087
NOTCH1	0	genome.wustl.edu	37	9	139412692	139412692	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	9	139412692	139412692	G	A	SNP	NOTCH1	ENST00000277541	human	ensembl	74_37	-1	known	silent	c.1152	p.G384	1.000	smart_EG-like_dom,pirsf_Notch,pfscan_EG-like_dom	pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,pfam_Ankyrin_rpt,pfam_EGF_extracell,pfam_Notch_NOD_dom,pfam_DUF3454_notch,pfam_Notch_NODP_dom,superfamily_Ankyrin_rpt-contain_dom,superfamily_Notch_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Notch_dom,smart_Ankyrin_rpt,pirsf_Notch,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_EG-like_dom,pfscan_Notch_dom,prints_Notch_1,prints_Notch_dom	-	no_errors	NOTCH1	HGNC	ENSG00000148400				28	0	0	14	2	12.5
TPRN	0	genome.wustl.edu	37	9	140093527	140093527	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	9	140093527	140093527	T	C	SNP	TPRN	ENST00000409012	human	ensembl	74_37	-1	known	missense	c.1637	p.Y546C	1.000	NULL	NULL	-	no_errors	TPRN	HGNC	ENSG00000176058				199	1	0.5	109	11	9.16667
NDOR1	0	genome.wustl.edu	37	9	140110812	140110812	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	9	140110812	140110812	G	A	SNP	NDOR1	ENST00000371521	human	ensembl	74_37	+1	known	missense	c.1765	p.A589T	0.003	NULL	pfam_FAD-binding_1,pfam_Flavodoxin/NO_synth,pfam_OxRdtase_FAD/NAD-bd,superfamily_Riboflavin_synthase-like_b-brl,pfscan_Flavodoxin/NO_synth,prints_Flavoprot_Pyr_Nucl_cyt_Rdtase,prints_Flavdoxin	-	no_errors	NDOR1	HGNC	ENSG00000188566				94	0	0	50	23	31.5068
PNPLA7	0	genome.wustl.edu	37	9	140400464	140400464	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	9	140400464	140400464	C	T	SNP	PNPLA7	ENST00000406427	human	ensembl	74_37	-1	known	missense	c.1297	p.E433K	0.001	NULL	pfam_cNMP-bd_dom,pfam_Patatin/PLipase_A2-rel,superfamily_Acyl_Trfase/lysoPLipase,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom	-	no_errors	PNPLA7	HGNC	ENSG00000130653				29	0	0	12	7	36.8421
PNPLA7	0	genome.wustl.edu	37	9	140435173	140435173	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	9	140435173	140435173	T	C	SNP	PNPLA7	ENST00000406427	human	ensembl	74_37	-1	known	missense	c.668	p.D223G	0.997	pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom	pfam_cNMP-bd_dom,pfam_Patatin/PLipase_A2-rel,superfamily_Acyl_Trfase/lysoPLipase,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom	-	no_errors	PNPLA7	HGNC	ENSG00000130653				21	0	0	8	7	46.6667
CACNA1B	0	genome.wustl.edu	37	9	140850184	140850184	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	9	140850184	140850184	C	T	SNP	CACNA1B	ENST00000371355	human	ensembl	74_37	+1	known	missense	c.1105	p.R369C	1.000	prints_VDCCAlpha1	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,pfscan_EF_hand_dom,prints_VDCCAlpha1,prints_VDCC_N_a1su,prints_PKD_2	-	no_errors	CACNA1B	HGNC	ENSG00000148408				24	0	0	16	7	30.4348
CACNA1B	0	genome.wustl.edu	37	9	140952269	140952269	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	9	140952269	140952269	C	T	SNP	CACNA1B	ENST00000371355	human	ensembl	74_37	+1	known	missense	c.4057	p.L1353F	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,pfscan_EF_hand_dom,prints_VDCCAlpha1,prints_VDCC_N_a1su,prints_PKD_2	-	no_errors	CACNA1B	HGNC	ENSG00000148408				43	0	0	14	11	44
CER1	0	genome.wustl.edu	37	9	14722635	14722635	+	Silent	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	9	14722635	14722635	C	T	SNP	CER1	ENST00000380911	human	ensembl	74_37	-1	known	silent	c.36	p.L12	0.388	pirsf_Cerberus	pfam_DAN,pfam_Cys_knot,smart_Cys_knot_C,pirsf_Cerberus,pfscan_Cys_knot_C	-	no_errors	CER1	HGNC	ENSG00000147869				175	0	0	67	25	27.1739
ENSG00000232000	0	genome.wustl.edu	37	9	15047970	15047970	+	RNA	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	9	15047970	15047970	A	G	SNP	ENSG00000232000	ENST00000609203	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	RP11-54D18.3	Clone_based_vega_gene	ENSG00000232000				77	0	0	68	13	16.0494
TTC39B	0	genome.wustl.edu	37	9	15214159	15214159	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	9	15214159	15214159	C	T	SNP	TTC39B	ENST00000512701	human	ensembl	74_37	-1	known	missense	c.460	p.A154T	1.000	pfam_OMP_IML2_mit/TPR_39	pfam_OMP_IML2_mit/TPR_39,smart_TPR_repeat	-	no_errors	TTC39B	HGNC	ENSG00000155158				117	0	0	50	17	25.3731
CCDC171	0	genome.wustl.edu	37	9	15591502	15591502	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	9	15591502	15591502	G	A	SNP	CCDC171	ENST00000380701	human	ensembl	74_37	+1	known	missense	c.491	p.R164Q	0.182	NULL	superfamily_STAT_TF_coiled-coil	-	no_errors	CCDC171	HGNC	ENSG00000164989				91	0	0	43	17	28.3333
CCDC171	0	genome.wustl.edu	37	9	15623365	15623365	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	9	15623365	15623365	T	C	SNP	CCDC171	ENST00000380701	human	ensembl	74_37	+1	known	missense	c.776	p.L259P	1.000	NULL	superfamily_STAT_TF_coiled-coil	-	no_errors	CCDC171	HGNC	ENSG00000164989				270	0	0	168	22	11.5789
CCDC171	0	genome.wustl.edu	37	9	15874651	15874651	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	9	15874651	15874651	T	C	SNP	CCDC171	ENST00000380701	human	ensembl	74_37	+1	known	missense	c.3590	p.V1197A	1.000	NULL	superfamily_STAT_TF_coiled-coil	-	no_errors	CCDC171	HGNC	ENSG00000164989				171	0	0	91	32	26.0163
CBWD1	0	genome.wustl.edu	37	9	163985	163985	+	Silent	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	9	163985	163985	A	G	SNP	CBWD1	ENST00000356521	human	ensembl	74_37	-1	known	silent	c.483	p.Y161	0.999	pfam_CobW/HypB/UreG_dom,superfamily_P-loop_NTPase	pfam_CobW/HypB/UreG_dom,pfam_Cbl_biosynth_CobW-like_C,superfamily_P-loop_NTPase,superfamily_Cbl_biosynth_CobW-like_C	-	no_errors	CBWD1	HGNC	ENSG00000172785				216	1	0.460829	155	28	15.3005
CNTLN	0	genome.wustl.edu	37	9	17394908	17394908	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	9	17394908	17394908	A	T	SNP	CNTLN	ENST00000380647	human	ensembl	74_37	+1	known	missense	c.2456	p.Y819F	0.000	NULL	superfamily_Prefoldin	-	no_errors	CNTLN	HGNC	ENSG00000044459				208	0	0	85	41	32.5397
CNTLN	0	genome.wustl.edu	37	9	17484474	17484474	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	9	17484474	17484474	A	G	SNP	CNTLN	ENST00000380647	human	ensembl	74_37	+1	known	missense	c.4037	p.Q1346R	0.997	NULL	superfamily_Prefoldin	-	no_errors	CNTLN	HGNC	ENSG00000044459				155	0	0	71	28	28.2828
DENND4C	0	genome.wustl.edu	37	9	19372127	19372127	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	9	19372127	19372127	A	G	SNP	DENND4C	ENST00000602925	human	ensembl	74_37	+1	known	missense	c.5686	p.S1896G	0.960	NULL	pfam_DENN_dom,pfam_dDENN_dom,pfam_uDENN_dom,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom	-	no_errors	DENND4C	HGNC	ENSG00000137145				238	0	0	125	51	28.9773
SLC24A2	0	genome.wustl.edu	37	9	19516300	19516300	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	9	19516300	19516300	T	C	SNP	SLC24A2	ENST00000341998	human	ensembl	74_37	-1	known	missense	c.1837	p.M613V	1.000	pfam_NaCa_Exmemb,tigrfam_K/Na/Ca-exchanger	pfam_NaCa_Exmemb,tigrfam_K/Na/Ca-exchanger	-	no_errors	SLC24A2	HGNC	ENSG00000155886				118	0	0	65	48	42.4779
MLLT3	0	genome.wustl.edu	37	9	20414298	20414298	+	Silent	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	9	20414298	20414298	A	G	SNP	MLLT3	ENST00000380338	human	ensembl	74_37	-1	known	silent	c.546	p.S182	0.000	NULL	pfam_YEATS,pfscan_YEATS	-	no_errors	MLLT3	HGNC	ENSG00000171843				154	0	0	93	12	11.4286
FOCAD	0	genome.wustl.edu	37	9	20885231	20885231	+	Splice_Site	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	9	20885231	20885231	T	C	SNP	FOCAD	ENST00000338382	human	ensembl	74_37	+1	known	splice_site	c.2625+2	e20+2	1.000	-	-	-	no_errors	FOCAD	HGNC	ENSG00000188352				194	0	0	84	44	34.375
KLHL9	0	genome.wustl.edu	37	9	21333894	21333894	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	9	21333894	21333894	T	C	SNP	KLHL9	ENST00000359039	human	ensembl	74_37	-1	known	missense	c.965	p.E322G	1.000	smart_Kelch_1,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BACK,pfam_BTB_POZ,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL9	HGNC	ENSG00000198642				209	0	0	131	18	12.0805
SMARCA2	0	genome.wustl.edu	37	9	2161854	2161854	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	9	2161854	2161854	A	G	SNP	SMARCA2	ENST00000349721	human	ensembl	74_37	+1	known	missense	c.4150	p.T1384A	1.000	superfamily_Bromodomain,smart_Bromodomain	pfam_SNF2_N,pfam_Bromodomain,pfam_BRK_domain,pfam_Helicase/SANT-assoc_DNA-bd,pfam_Helicase_C,pfam_Gln-Leu-Gln_QLQ,superfamily_P-loop_NTPase,superfamily_Bromodomain,superfamily_RNaseH-like_dom,smart_Gln-Leu-Gln_QLQ,smart_HAS_subgr,smart_BRK_domain,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Bromodomain,pfscan_Helicase/SANT-assoc_DNA-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	SMARCA2	HGNC	ENSG00000080503				74	0	0	42	7	14.2857
PLAA	0	genome.wustl.edu	37	9	26935204	26935204	+	Silent	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	9	26935204	26935204	A	G	SNP	PLAA	ENST00000397292	human	ensembl	74_37	-1	known	silent	c.150	p.S50	1.000	superfamily_WD40_repeat_dom,pfscan_WD40_repeat_dom	pfam_PUL,pfam_WD40_repeat,pfam_PLAA_fam_Ub-bd_PFU,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	PLAA	HGNC	ENSG00000137055				142	0	0	97	6	5.82524
C9orf72	0	genome.wustl.edu	37	9	27560292	27560292	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	9	27560292	27560292	A	C	SNP	C9orf72	ENST00000380003	human	ensembl	74_37	-1	known	missense	c.671	p.I224S	1.000	NULL	NULL	-	no_errors	C9orf72	HGNC	ENSG00000147894				52	0	0	40	20	33.3333
ACO1	0	genome.wustl.edu	37	9	32423340	32423340	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	9	32423340	32423340	T	C	SNP	ACO1	ENST00000309951	human	ensembl	74_37	+1	known	missense	c.994	p.Y332H	0.000	pfam_Acoase/IPM_deHydtase_lsu_aba,superfamily_Acoase/IPM_deHydtase_lsu_aba,tigrfam_Aconitase/Fe_reg_prot_2	pfam_Acoase/IPM_deHydtase_lsu_aba,pfam_AconitaseA/IPMdHydase_ssu_swvl,superfamily_Acoase/IPM_deHydtase_lsu_aba,superfamily_Aconitase/3IPM_dehydase_swvl,prints_Acoase/IPM_deHydtase_lsu_aba,tigrfam_Aconitase/Fe_reg_prot_2	-	no_errors	ACO1	HGNC	ENSG00000122729				170	0	0	99	7	6.60377
NFX1	0	genome.wustl.edu	37	9	33369964	33369964	+	Silent	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	9	33369964	33369964	C	T	SNP	NFX1	ENST00000379540	human	ensembl	74_37	+1	known	silent	c.3351	p.D1117	0.995	NULL	pfam_Znf_NFX1,pfam_R3H_ss-bd,smart_Znf_RING,smart_Znf_NFX1,smart_R3H_ss-bd,pfscan_Znf_PHD-finger,pfscan_Znf_RING,pfscan_R3H_ss-bd	-	no_errors	NFX1	HGNC	ENSG00000086102				68	0	0	32	15	31.9149
PRSS3	0	genome.wustl.edu	37	9	33796745	33796745	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	9	33796745	33796745	G	T	SNP	PRSS3	ENST00000361005	human	ensembl	74_37	+1	known	missense	c.316	p.G106C	1.000	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1,prints_Peptidase_S1A	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	PRSS3	HGNC	ENSG00000010438				317	1	0.314465	177	49	21.6814
KIF24	0	genome.wustl.edu	37	9	34257342	34257342	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	9	34257342	34257342	G	A	SNP	KIF24	ENST00000379166	human	ensembl	74_37	-1	known	missense	c.2263	p.P755S	0.007	NULL	pfam_Kinesin_motor_dom,pfam_SAM_type1,superfamily_P-loop_NTPase,superfamily_SAM/pointed,smart_Kinesin_motor_dom,pfscan_SAM,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF24	HGNC	ENSG00000186638				399	0	0	190	91	32.3843
NUDT2	0	genome.wustl.edu	37	9	34343374	34343374	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	9	34343374	34343374	A	G	SNP	NUDT2	ENST00000346365	human	ensembl	74_37	+1	known	missense	c.380	p.Q127R	0.975	pfam_NUDIX_hydrolase_dom,superfamily_NUDIX_hydrolase_dom-like,prints_Tetra_PHTase	pfam_NUDIX_hydrolase_dom,superfamily_NUDIX_hydrolase_dom-like,prints_Tetra_PHTase	-	no_errors	NUDT2	HGNC	ENSG00000164978				130	0	0	81	10	10.989
KIAA1161	0	genome.wustl.edu	37	9	34371269	34371269	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	9	34371269	34371269	G	A	SNP	KIAA1161	ENST00000297625	human	ensembl	74_37	-1	known	missense	c.1571	p.A524V	0.439	pfam_Glyco_hydro_31,superfamily_Glycoside_hydrolase_SF	pfam_Glyco_hydro_31,superfamily_Glycoside_hydrolase_SF	-	no_errors	KIAA1161	HGNC	ENSG00000164976				22	0	0	10	7	41.1765
KIAA1161	0	genome.wustl.edu	37	9	34372586	34372586	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	9	34372586	34372586	G	A	SNP	KIAA1161	ENST00000297625	human	ensembl	74_37	-1	known	missense	c.254	p.A85V	0.002	NULL	pfam_Glyco_hydro_31,superfamily_Glycoside_hydrolase_SF	-	no_errors	KIAA1161	HGNC	ENSG00000164976				26	0	0	18	2	10
DNAJB5	0	genome.wustl.edu	37	9	34996633	34996633	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	9	34996633	34996633	C	T	SNP	DNAJB5	ENST00000454002	human	ensembl	74_37	+1	known	missense	c.799	p.R267C	1.000	superfamily_HSP40/DnaJ_pept-bd	pfam_DnaJ_C,pfam_DnaJ_domain,superfamily_DnaJ_domain,superfamily_HSP40/DnaJ_pept-bd,smart_DnaJ_domain,pfscan_DnaJ_domain,prints_DnaJ_domain	-	no_errors	DNAJB5	HGNC	ENSG00000137094				62	0	0	36	7	16.2791
C9orf131	0	genome.wustl.edu	37	9	35045821	35045821	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	9	35045821	35045821	A	C	SNP	C9orf131	ENST00000312292	human	ensembl	74_37	+1	known	missense	c.3195	p.K1065N	0.000	NULL	NULL	-	no_errors	C9orf131	HGNC	ENSG00000174038				342	2	0.581395	273	26	8.69565
ATP8B5P	0	genome.wustl.edu	37	9	35450007	35450007	+	RNA	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	9	35450007	35450007	A	G	SNP	ATP8B5P	ENST00000430846	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.983	-	-	-	no_errors	ATP8B5P	HGNC	ENSG00000179766				119	0	0	76	10	11.6279
TPM2	0	genome.wustl.edu	37	9	35689707	35689707	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	9	35689707	35689707	G	A	SNP	TPM2	ENST00000360958	human	ensembl	74_37	-1	known	silent	c.108	p.C36	1.000	NULL	pfam_Tropomyosin,prints_Tropomyosin	-	no_errors	TPM2	HGNC	ENSG00000198467				270	0	0	133	76	36.3636
CREB3	0	genome.wustl.edu	37	9	35736081	35736081	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	9	35736081	35736081	G	A	SNP	CREB3	ENST00000353704	human	ensembl	74_37	+1	known	missense	c.648	p.M216I	0.982	NULL	pfam_bZIP,superfamily_TF_DNA-bd,smart_bZIP,pfscan_bZIP	-	no_errors	CREB3	HGNC	ENSG00000107175				266	0	0	162	67	29.2576
RGP1	0	genome.wustl.edu	37	9	35750330	35750330	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	9	35750330	35750330	G	A	SNP	RGP1	ENST00000456972	human	ensembl	74_37	+1	known	silent	c.327	p.Q109	0.998	NULL	pfam_Rgp1	-	no_errors	RGP1	HGNC	ENSG00000107185				44	0	0	24	12	33.3333
SPAG8	0	genome.wustl.edu	37	9	35808152	35808152	+	RNA	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	9	35808152	35808152	T	C	SNP	SPAG8	ENST00000463889	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SPAG8	HGNC	ENSG00000137098				193	0	0	98	48	32.8767
RECK	0	genome.wustl.edu	37	9	36121578	36121578	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	9	36121578	36121578	C	T	SNP	RECK	ENST00000377966	human	ensembl	74_37	+1	known	missense	c.2587	p.R863C	1.000	NULL	pfam_Kazal_dom,superfamily_Prot_inh_PMP,smart_Kazal_dom	-	no_errors	RECK	HGNC	ENSG00000122707				249	1	0.4	108	51	32.0755
RNF38	0	genome.wustl.edu	37	9	36390590	36390590	+	Silent	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	9	36390590	36390590	T	C	SNP	RNF38	ENST00000259605	human	ensembl	74_37	-1	known	silent	c.36	p.A12	1.000	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF38	HGNC	ENSG00000137075				184	0	0	91	50	35.461
SLC25A51	0	genome.wustl.edu	37	9	37888367	37888367	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	9	37888367	37888367	A	G	SNP	SLC25A51	ENST00000242275	human	ensembl	74_37	-1	known	missense	c.181	p.Y61H	0.997	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	-	no_errors	SLC25A51	HGNC	ENSG00000122696				229	0	0	88	44	33.3333
CNTNAP3B	0	genome.wustl.edu	37	9	43822762	43822762	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	9	43822762	43822762	C	T	SNP	CNTNAP3B	ENST00000377564	human	ensembl	74_37	+1	known	missense	c.1316	p.P439L	0.000	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,superfamily_ConA-like_lec_gl_sf,superfamily_Fibrinogen_a/b/g_C_dom,smart_Coagulation_fac_5/8-C_type_dom,smart_Laminin_G,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_Laminin_G	-	no_errors	CNTNAP3B	HGNC	ENSG00000154529				9	0	0	4	7	63.6364
JAK2	0	genome.wustl.edu	37	9	5089710	5089710	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	9	5089710	5089710	C	T	SNP	JAK2	ENST00000381652	human	ensembl	74_37	+1	known	missense	c.2608	p.P870S	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Tyr_kinase_non-rcpt_Jak/Tyk2,pfscan_Prot_kinase_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_SH2,superfamily_Kinase-like_dom,superfamily_FERM_central,smart_Band_41_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Tyr_kinase_non-rcpt_Jak/Tyk2,pfscan_FERM_domain,pfscan_SH2,pfscan_Prot_kinase_dom,prints_Tyr_kinase_non-rcpt_Jak/Tyk2,prints_Tyr_kinase_non-rcpt_Jak2,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	JAK2	HGNC	ENSG00000096968				172	0	0	72	23	24.2105
GLDC	0	genome.wustl.edu	37	9	6610292	6610292	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	9	6610292	6610292	A	G	SNP	GLDC	ENST00000321612	human	ensembl	74_37	-1	known	missense	c.535	p.Y179H	1.000	pfam_GDC-P_N,superfamily_PyrdxlP-dep_Trfase,tigrfam_GDC_P_homo	pfam_GDC-P_N,pfam_ArAA_b-elim_lyase/Thr_aldolase,superfamily_PyrdxlP-dep_Trfase,tigrfam_GDC_P_homo	-	no_errors	GLDC	HGNC	ENSG00000178445				45	0	0	31	4	11.4286
PGM5P2	0	genome.wustl.edu	37	9	69117758	69117758	+	RNA	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	9	69117758	69117758	A	G	SNP	PGM5P2	ENST00000591037	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	PGM5P2	HGNC	ENSG00000227558				149	0	0	78	24	23.5294
FOXD4L3	0	genome.wustl.edu	37	9	70919007	70919007	+	Silent	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	9	70919007	70919007	C	T	SNP	FOXD4L3	ENST00000342833	human	ensembl	74_37	+1	known	silent	c.1140	p.L380	0.847	NULL	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXD4L3	HGNC	ENSG00000187559				55	0	0	23	12	34.2857
KANK1	0	genome.wustl.edu	37	9	711135	711135	+	Silent	SNP	C	C	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	9	711135	711135	C	A	SNP	KANK1	ENST00000382297	human	ensembl	74_37	+1	known	silent	c.369	p.P123	0.005	NULL	pfam_Ankyrin_rpt,pfam_KN_motif,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	KANK1	HGNC	ENSG00000107104				192	0	0	90	42	31.8182
SMC5	0	genome.wustl.edu	37	9	72897376	72897376	+	Silent	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	9	72897376	72897376	A	G	SNP	SMC5	ENST00000361138	human	ensembl	74_37	+1	known	silent	c.858	p.K286	0.997	pfam_RecF/RecN/SMC_N,superfamily_P-loop_NTPase	pfam_RecF/RecN/SMC_N,superfamily_P-loop_NTPase	-	no_errors	SMC5	HGNC	ENSG00000198887				125	0	0	67	24	26.3736
TMEM2	0	genome.wustl.edu	37	9	74332984	74332984	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	9	74332984	74332984	T	C	SNP	TMEM2	ENST00000377044	human	ensembl	74_37	-1	known	missense	c.2279	p.H760R	1.000	superfamily_Pectin_lyase_fold/virulence	pfam_G8_domain,superfamily_Pectin_lyase_fold/virulence	-	no_errors	TMEM2	HGNC	ENSG00000135048				222	0	0	158	16	9.1954
GDA	0	genome.wustl.edu	37	9	74842916	74842916	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	9	74842916	74842916	C	T	SNP	GDA	ENST00000238018	human	ensembl	74_37	+1	known	nonsense	c.880	p.R294*	0.991	pfam_Amidohydro_1,tigrfam_Guanine_deaminase	pfam_Amidohydro_1,tigrfam_Guanine_deaminase	-	no_errors	GDA	HGNC	ENSG00000119125				32	0	0	13	10	43.4783
KIF27	0	genome.wustl.edu	37	9	86504088	86504088	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	9	86504088	86504088	G	A	SNP	KIF27	ENST00000297814	human	ensembl	74_37	-1	known	silent	c.1890	p.H630	0.002	NULL	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF27	HGNC	ENSG00000165115				312	0	0	157	50	24.1546
NTRK2	0	genome.wustl.edu	37	9	87366958	87366958	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	9	87366958	87366958	T	C	SNP	NTRK2	ENST00000277120	human	ensembl	74_37	+1	known	missense	c.1354	p.F452L	1.000	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Ig_I-set,pfam_LRR-contain_N,superfamily_Kinase-like_dom,smart_LRR-contain_N,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_Tyr_kinase_NGF_rcpt,prints_Tyr_kin_neurotrophic_rcpt_2	-	no_errors	NTRK2	HGNC	ENSG00000148053				116	0	0	82	6	6.81818
ZCCHC6	0	genome.wustl.edu	37	9	88938154	88938154	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	9	88938154	88938154	C	A	SNP	ZCCHC6	ENST00000375963	human	ensembl	74_37	-1	known	missense	c.2511	p.Q837H	0.000	NULL	pfam_PAP_assoc,pfam_Znf_CCHC,superfamily_Znf_CCHC,smart_Znf_U1,smart_Znf_CCHC,pfscan_Znf_CCHC	-	no_errors	ZCCHC6	HGNC	ENSG00000083223				137	0	0	82	9	9.89011
NOL8	0	genome.wustl.edu	37	9	95062252	95062252	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	9	95062252	95062252	C	A	SNP	NOL8	ENST00000442668	human	ensembl	74_37	-1	known	missense	c.3222	p.Q1074H	0.993	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	NOL8	HGNC	ENSG00000198000				407	0	0	204	99	32.6733
IPPK	0	genome.wustl.edu	37	9	95400351	95400351	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	9	95400351	95400351	G	A	SNP	IPPK	ENST00000287996	human	ensembl	74_37	-1	known	missense	c.848	p.P283L	0.000	pfam_Ins_P5_2-kin	pfam_Ins_P5_2-kin	-	no_errors	IPPK	HGNC	ENSG00000127080				27	0	0	13	9	40.9091
IPPK	0	genome.wustl.edu	37	9	95411818	95411818	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	9	95411818	95411818	A	G	SNP	IPPK	ENST00000287996	human	ensembl	74_37	-1	known	missense	c.331	p.Y111H	0.999	pfam_Ins_P5_2-kin	pfam_Ins_P5_2-kin	-	no_errors	IPPK	HGNC	ENSG00000127080				109	0	0	80	12	13.0435
BICD2	0	genome.wustl.edu	37	9	95481493	95481493	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	9	95481493	95481493	G	A	SNP	BICD2	ENST00000356884	human	ensembl	74_37	-1	known	silent	c.1434	p.G478	1.000	pfam_Bicaudal-D_microtubule-assoc	pfam_Bicaudal-D_microtubule-assoc	-	no_errors	BICD2	HGNC	ENSG00000185963				118	0	0	72	9	11.1111
ZNF484	0	genome.wustl.edu	37	9	95609231	95609231	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	9	95609231	95609231	C	T	SNP	ZNF484	ENST00000395506	human	ensembl	74_37	-1	known	missense	c.1844	p.C615Y	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF484	HGNC	ENSG00000127081				139	0	0	66	24	26.6667
C9orf3	0	genome.wustl.edu	37	9	97555117	97555117	+	Silent	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	9	97555117	97555117	C	T	SNP	C9orf3	ENST00000375315	human	ensembl	74_37	+1	known	silent	c.1035	p.C345	1.000	pfam_Peptidase_M1_N	pfam_Peptidase_M1_N,pfam_Peptidase_M1_C,superfamily_ARM-type_fold	-	no_errors	C9orf3	HGNC	ENSG00000148120				458	0	0	223	117	34.4118
ERCC6L2	0	genome.wustl.edu	37	9	98718286	98718286	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	9	98718286	98718286	A	G	SNP	ERCC6L2	ENST00000437817	human	ensembl	74_37	+1	known	missense	c.1404	p.I468M	0.495	pfam_HDA_complex_subunit-2/3,superfamily_P-loop_NTPase,pfscan_Helicase_C	pfam_SNF2_N,pfam_Helicase_C,pfam_HDA_complex_subunit-2/3,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	ERCC6L2	HGNC	ENSG00000182150				173	0	0	121	10	7.63359
CDC14B	0	genome.wustl.edu	37	9	99284802	99284802	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	9	99284802	99284802	G	A	SNP	CDC14B	ENST00000375241	human	ensembl	74_37	-1	known	silent	c.1329	p.N443	0.000	NULL	pfam_Dual-sp_phosphatase_cat-dom,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Dual-sp_phosphatase_subgr_cat,smart_Tyr_Pase_cat,pfscan_Tyr/Dual-sp_Pase,pfscan_Dual-sp_phosphatase_subgr_cat	-	no_errors	CDC14B	HGNC	ENSG00000081377				147	0	0	87	38	30.4
ZNF782	0	genome.wustl.edu	37	9	99581062	99581062	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	9	99581062	99581062	T	C	SNP	ZNF782	ENST00000481138	human	ensembl	74_37	-1	known	missense	c.1243	p.T415A	0.996	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF782	HGNC	ENSG00000196597				215	0	0	123	55	30.8989
DRP2	0	genome.wustl.edu	37	X	100515565	100515565	+	Silent	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	X	100515565	100515565	T	C	SNP	DRP2	ENST00000395209	human	ensembl	74_37	+1	known	silent	c.2829	p.S943	1.000	pirsf_Dystrophin-related_2	pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_Znf_ZZ,pfam_Spectrin_repeat,pfam_WW_dom,superfamily_WW_dom,smart_Spectrin/alpha-actinin,smart_WW_dom,smart_Znf_ZZ,pirsf_Dystrophin-related_2,pfscan_WW_dom,pfscan_Znf_ZZ	-	no_errors	DRP2	HGNC	ENSG00000102385				450	0	0	316	22	6.50888
RPL36A	0	genome.wustl.edu	37	X	100646445	100646445	+	Splice_Site	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	X	100646445	100646445	A	G	SNP	RPL36A	ENST00000427805	human	ensembl	74_37	+1	known	splice_site	c.112-2	e2-2	1.000	-	-	-	no_errors	RPL36A	HGNC	ENSG00000241343				419	0	0	278	24	7.94702
HNRNPH2	0	genome.wustl.edu	37	X	100667240	100667240	+	Silent	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	X	100667240	100667240	T	C	SNP	HNRNPH2	ENST00000316594	human	ensembl	74_37	+1	known	silent	c.264	p.S88	0.997	pfscan_RRM_dom	pfam_RRM_dom,pfam_Znf_CHHC,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	HNRNPH2	HGNC	ENSG00000126945				322	0	0	200	22	9.90991
TCEAL6	0	genome.wustl.edu	37	X	101395936	101395936	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	X	101395936	101395936	T	G	SNP	TCEAL6	ENST00000372773	human	ensembl	74_37	-1	known	missense	c.368	p.K123T	0.023	pfam_TF_A-like/BEX-like	pfam_TF_A-like/BEX-like	-	no_errors	TCEAL6	HGNC	ENSG00000204071				274	1	0.363636	115	72	38.5027
GPRASP2	0	genome.wustl.edu	37	X	101969872	101969872	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	X	101969872	101969872	G	A	SNP	GPRASP2	ENST00000332262	human	ensembl	74_37	+1	known	silent	c.75	p.G25	0.135	NULL	pfam_ARM-rpt_dom,superfamily_ARM-type_fold	-	no_errors	GPRASP2	HGNC	ENSG00000158301				325	0	0	229	20	8.03213
GPRASP2	0	genome.wustl.edu	37	X	101970123	101970123	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	X	101970123	101970123	G	A	SNP	GPRASP2	ENST00000332262	human	ensembl	74_37	+1	known	missense	c.326	p.R109H	0.266	NULL	pfam_ARM-rpt_dom,superfamily_ARM-type_fold	-	no_errors	GPRASP2	HGNC	ENSG00000158301				407	0	0	181	88	32.7138
CXorf57	0	genome.wustl.edu	37	X	105883944	105883944	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	X	105883944	105883944	G	A	SNP	CXorf57	ENST00000372548	human	ensembl	74_37	+1	known	missense	c.1897	p.A633T	0.000	NULL	superfamily_NA-bd_OB-fold	-	no_errors	CXorf57	HGNC	ENSG00000147231				200	0	0	116	10	7.93651
RBM41	0	genome.wustl.edu	37	X	106312575	106312575	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	X	106312575	106312575	A	G	SNP	RBM41	ENST00000372479	human	ensembl	74_37	-1	known	missense	c.985	p.F329L	1.000	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBM41	HGNC	ENSG00000089682				399	0	0	264	14	5.03597
FRMPD3	0	genome.wustl.edu	37	X	106803511	106803511	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	X	106803511	106803511	C	T	SNP	FRMPD3	ENST00000276185	human	ensembl	74_37	+1	known	missense	c.886	p.R296C	1.000	pfam_FERM_central,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain	pfam_FERM_central,pfam_PDZ,superfamily_FERM_central,superfamily_PDZ,smart_PDZ,smart_Band_41_domain,pfscan_FERM_domain,pfscan_PDZ	-	no_errors	FRMPD3	HGNC	ENSG00000147234				199	0	0	121	39	24.375
FRMPD3	0	genome.wustl.edu	37	X	106845696	106845696	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	X	106845696	106845696	A	G	SNP	FRMPD3	ENST00000276185	human	ensembl	74_37	+1	known	missense	c.4526	p.Y1509C	1.000	NULL	pfam_FERM_central,pfam_PDZ,superfamily_FERM_central,superfamily_PDZ,smart_PDZ,smart_Band_41_domain,pfscan_FERM_domain,pfscan_PDZ	-	no_errors	FRMPD3	HGNC	ENSG00000147234				153	0	0	94	6	6
TSC22D3	0	genome.wustl.edu	37	X	106957919	106957919	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	X	106957919	106957919	G	T	SNP	TSC22D3	ENST00000315660	human	ensembl	74_37	-1	known	missense	c.433	p.Q145K	1.000	pfam_TSC-22_Dip_Bun	pfam_TSC-22_Dip_Bun	-	no_errors	TSC22D3	HGNC	ENSG00000157514				442	2	0.45045	232	115	33.1412
MID2	0	genome.wustl.edu	37	X	107148791	107148791	+	Silent	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	X	107148791	107148791	T	C	SNP	MID2	ENST00000262843	human	ensembl	74_37	+1	known	silent	c.1008	p.A336	0.774	smart_Bbox_C	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_Znf_RING,smart_Znf_B-box,smart_Bbox_C,smart_Fibronectin_type3,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Fibronectin_type3,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	MID2	HGNC	ENSG00000080561				422	0	0	205	95	31.6667
IRS4	0	genome.wustl.edu	37	X	107979483	107979483	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	X	107979483	107979483	G	A	SNP	IRS4	ENST00000372129	human	ensembl	74_37	-1	known	missense	c.92	p.T31I	0.073	NULL	pfam_Insln_rcpt_S1,smart_Pleckstrin_homology,smart_Insln_rcpt_S1,pfscan_Pleckstrin_homology,pfscan_Insln_rcpt_S1,prints_Insln_rcpt_S1	-	no_errors	IRS4	HGNC	ENSG00000133124				139	0	0	82	6	6.81818
TRPC5	0	genome.wustl.edu	37	X	111095589	111095589	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	X	111095589	111095589	C	T	SNP	TRPC5	ENST00000262839	human	ensembl	74_37	-1	known	missense	c.1314	p.M438I	1.000	pfam_Ion_trans_dom,tigrfam_TRP_channel	pfam_Ion_trans_dom,pfam_TRP_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,prints_TRPC5_channel,prints_TRPC_channel,tigrfam_TRP_channel	-	no_errors	TRPC5	HGNC	ENSG00000072315				301	0	0	164	9	5.20231
TRPC5	0	genome.wustl.edu	37	X	111155755	111155755	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	X	111155755	111155755	G	A	SNP	TRPC5	ENST00000262839	human	ensembl	74_37	-1	known	missense	c.664	p.R222C	1.000	pfam_TRP_dom,tigrfam_TRP_channel	pfam_Ion_trans_dom,pfam_TRP_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,prints_TRPC5_channel,prints_TRPC_channel,tigrfam_TRP_channel	-	no_errors	TRPC5	HGNC	ENSG00000072315				504	1	0.19802	207	86	29.3515
LHFPL1	0	genome.wustl.edu	37	X	111914429	111914429	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	X	111914429	111914429	C	T	SNP	LHFPL1	ENST00000371968	human	ensembl	74_37	-1	known	missense	c.190	p.V64M	1.000	pfam_Lipome_HGMIC_fus_partner-like	pfam_Lipome_HGMIC_fus_partner-like	-	no_errors	LHFPL1	HGNC	ENSG00000182508				350	0	0	214	14	6.14035
AMOT	0	genome.wustl.edu	37	X	112033828	112033828	+	Silent	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	X	112033828	112033828	A	G	SNP	AMOT	ENST00000371959	human	ensembl	74_37	-1	known	silent	c.2109	p.A703	1.000	pfam_Angiomotin_C,prints_Angiomotin	pfam_Angiomotin_C,superfamily_Prefoldin,prints_Angiomotin	-	no_errors	AMOT	HGNC	ENSG00000126016				796	0	0	421	159	27.4138
ENSG00000228532	0	genome.wustl.edu	37	X	114953364	114953364	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	X	114953364	114953364	G	A	SNP	ENSG00000228532	ENST00000449327	human	ensembl	74_37	-1	novel	silent	c.186	p.F62	0.999	pfam_Rad60/SUMO_like,pfam_Ubiquitin_dom,smart_Ubiquitin_dom,pfscan_Ubiquitin_supergroup	pfam_Rad60/SUMO_like,pfam_Ubiquitin_dom,smart_Ubiquitin_dom,pfscan_Ubiquitin_supergroup	-	no_errors	RP1-241P17.4	Clone_based_vega_gene	ENSG00000228532				154	0	0	130	7	5.10949
KLHL13	0	genome.wustl.edu	37	X	117053538	117053538	+	Silent	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	X	117053538	117053538	A	G	SNP	KLHL13	ENST00000539496	human	ensembl	74_37	-1	known	silent	c.525	p.S175	0.999	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BTB_POZ,pfam_BACK,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL13	HGNC	ENSG00000003096				262	1	0.380228	122	58	32.2222
DOCK11	0	genome.wustl.edu	37	X	117677508	117677508	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	X	117677508	117677508	T	C	SNP	DOCK11	ENST00000276202	human	ensembl	74_37	+1	known	missense	c.344	p.V115A	0.997	pfam_DOCK_C/D_N	pfam_DOCK_C,pfam_DOCK_C/D_N,pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	DOCK11	HGNC	ENSG00000147251				287	1	0.347222	143	74	34.1014
CXorf56	0	genome.wustl.edu	37	X	118694255	118694255	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	X	118694255	118694255	T	C	SNP	CXorf56	ENST00000371594	human	ensembl	74_37	-1	known	missense	c.218	p.D73G	0.992	NULL	NULL	-	no_errors	CXorf56	HGNC	ENSG00000018610				365	0	0	298	24	7.45342
UPF3B	0	genome.wustl.edu	37	X	118972430	118972430	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	X	118972430	118972430	T	C	SNP	UPF3B	ENST00000276201	human	ensembl	74_37	-1	known	missense	c.907	p.K303E	1.000	NULL	pfam_Nonsense_mediated_decay_UPF3	-	no_errors	UPF3B	HGNC	ENSG00000125351				279	0	0	156	70	30.9735
RHOXF2B	0	genome.wustl.edu	37	X	119211110	119211110	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	X	119211110	119211110	C	T	SNP	RHOXF2B	ENST00000371402	human	ensembl	74_37	-1	known	missense	c.223	p.G75R	0.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	-	no_errors	RHOXF2B	HGNC	ENSG00000203989				112	0	0	51	19	27.1429
ZBTB33	0	genome.wustl.edu	37	X	119388375	119388375	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	X	119388375	119388375	G	T	SNP	ZBTB33	ENST00000326624	human	ensembl	74_37	+1	known	nonsense	c.1105	p.G369*	1.000	NULL	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB33	HGNC	ENSG00000177485				350	0	0	244	13	5.05837
MCTS1	0	genome.wustl.edu	37	X	119742205	119742205	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	X	119742205	119742205	A	G	SNP	MCTS1	ENST00000371315	human	ensembl	74_37	+1	known	missense	c.391	p.T131A	1.000	pfam_PUA,superfamily_PUA-like_domain,smart_PUA,pirsf_Transl_RNA-bd_prd,pfscan_PUA,tigrfam_Uncharacterised_CHP00451	pfam_PUA,superfamily_PUA-like_domain,smart_PUA,pirsf_Transl_RNA-bd_prd,pfscan_PUA,tigrfam_Uncharacterised_CHP00451	-	no_errors	MCTS1	HGNC	ENSG00000232119				194	0	0	151	11	6.79012
BCORL1	0	genome.wustl.edu	37	X	129147330	129147330	+	Silent	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	X	129147330	129147330	T	C	SNP	BCORL1	ENST00000303743	human	ensembl	74_37	+1	known	silent	c.582	p.T194	0.591	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	BCORL1	HGNC	ENSG00000085185				279	0	0	177	17	8.76289
BCORL1	0	genome.wustl.edu	37	X	129159178	129159178	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	X	129159178	129159178	T	C	SNP	BCORL1	ENST00000303743	human	ensembl	74_37	+1	known	missense	c.3902	p.M1301T	1.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	BCORL1	HGNC	ENSG00000085185				232	0	0	121	19	13.5714
RAB33A	0	genome.wustl.edu	37	X	129318513	129318513	+	Silent	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	X	129318513	129318513	T	C	SNP	RAB33A	ENST00000257017	human	ensembl	74_37	+1	known	silent	c.513	p.D171	0.998	pfam_Small_GTPase,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,pfam_EF_GTP-bd_dom,pfam_SRP_receptor_beta_su,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB33A	HGNC	ENSG00000134594				173	1	0.574713	86	33	27.7311
SLC25A14	0	genome.wustl.edu	37	X	129505599	129505599	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	X	129505599	129505599	T	C	SNP	SLC25A14	ENST00000339231	human	ensembl	74_37	+1	known	missense	c.1001	p.L334P	1.000	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier,prints_Mit_carrier	-	no_errors	SLC25A14	HGNC	ENSG00000102078				350	0	0	180	64	26.2295
ENSG00000207100	0	genome.wustl.edu	37	X	132286880	132286880	+	RNA	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	X	132286880	132286880	G	A	SNP	ENSG00000207100	ENST00000384372	human	ensembl	74_37	+1	novel	rna	NULL	NULL	1.000	-	-	-	no_errors	SNORA8	RFAM	ENSG00000207100				21	0	0	11	3	21.4286
FAM122C	0	genome.wustl.edu	37	X	133988192	133988192	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	X	133988192	133988192	G	A	SNP	FAM122C	ENST00000370784	human	ensembl	74_37	+1	known	missense	c.514	p.A172T	0.001	NULL	NULL	-	no_errors	FAM122C	HGNC	ENSG00000156500				185	0	0	95	12	11.215
DDX26B	0	genome.wustl.edu	37	X	134711258	134711258	+	Silent	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	X	134711258	134711258	T	C	SNP	DDX26B	ENST00000370752	human	ensembl	74_37	+1	known	silent	c.1914	p.P638	0.969	NULL	pfscan_VWF_A	-	no_errors	DDX26B	HGNC	ENSG00000165359				403	0	0	207	83	28.6207
GPR112	0	genome.wustl.edu	37	X	135494507	135494507	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	X	135494507	135494507	C	T	SNP	GPR112	ENST00000370652	human	ensembl	74_37	+1	known	nonsense	c.9019	p.R3007*	0.008	NULL	pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_Pentaxin,superfamily_ConA-like_lec_gl_sf,smart_Pentaxin,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	-	no_errors	GPR112	HGNC	ENSG00000156920				105	0	0	68	5	6.84932
HTATSF1	0	genome.wustl.edu	37	X	135582956	135582956	+	Silent	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	X	135582956	135582956	C	T	SNP	HTATSF1	ENST00000218364	human	ensembl	74_37	+1	known	silent	c.549	p.D183	0.999	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	HTATSF1	HGNC	ENSG00000102241				247	1	0.403226	110	43	28.1046
ARHGEF6	0	genome.wustl.edu	37	X	135790867	135790867	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	X	135790867	135790867	T	C	SNP	ARHGEF6	ENST00000250617	human	ensembl	74_37	-1	known	missense	c.890	p.Q297R	1.000	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_DH-domain	pfam_DH-domain,pfam_SH3_2,pfam_SH3_domain,pfam_CH-domain,pfam_Pleckstrin_homology,pfam_CAMSAP_CH,superfamily_DH-domain,superfamily_CH-domain,superfamily_SH3_domain,smart_CH-domain,smart_SH3_domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_CH-domain,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_DH-domain,prints_SH3_domain,prints_SM22_calponin	-	no_errors	ARHGEF6	HGNC	ENSG00000129675				98	0	0	56	21	27.2727
OFD1	0	genome.wustl.edu	37	X	13764477	13764477	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	X	13764477	13764477	C	T	SNP	OFD1	ENST00000340096	human	ensembl	74_37	+1	known	missense	c.557	p.A186V	0.001	NULL	superfamily_Lipoprotein_6,smart_LisH_dimerisation,pfscan_LisH_dimerisation	-	no_errors	OFD1	HGNC	ENSG00000046651				141	1	0.704225	75	31	29.2453
CSF2RA	0	genome.wustl.edu	37	X	1409328	1409328	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	X	1409328	1409328	A	G	SNP	CSF2RA	ENST00000417535	human	ensembl	74_37	+1	known	missense	c.572	p.Y191C	0.243	pfam_IL-6_rcpt_alpha-bd,superfamily_Fibronectin_type3	pfam_IL-6_rcpt_alpha-bd,superfamily_Fibronectin_type3	-	no_errors	CSF2RA	HGNC	ENSG00000198223				411	0	0	180	94	34.3066
MIR891A	0	genome.wustl.edu	37	X	145109341	145109341	+	RNA	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	X	145109341	145109341	A	G	SNP	MIR891A	ENST00000401237	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	MIR891A	HGNC	ENSG00000216056				113	0	0	70	7	9.09091
DUSP9	0	genome.wustl.edu	37	X	152914972	152914972	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	X	152914972	152914972	C	T	SNP	DUSP9	ENST00000342782	human	ensembl	74_37	+1	known	missense	c.659	p.A220V	1.000	pfam_Dual-sp_phosphatase_cat-dom,smart_Dual-sp_phosphatase_subgr_cat,pirsf_MKP,pfscan_Dual-sp_phosphatase_subgr_cat	pfam_Dual-sp_phosphatase_cat-dom,pfam_Rhodanese-like_dom,superfamily_Rhodanese-like_dom,smart_Rhodanese-like_dom,smart_Dual-sp_phosphatase_subgr_cat,pirsf_MKP,pfscan_Rhodanese-like_dom,pfscan_Tyr/Dual-sp_Pase,pfscan_Dual-sp_phosphatase_subgr_cat,prints_MKP	-	no_errors	DUSP9	HGNC	ENSG00000130829				223	0	0	113	48	29.8137
IDH3G	0	genome.wustl.edu	37	X	153052989	153052989	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	X	153052989	153052989	C	T	SNP	IDH3G	ENST00000217901	human	ensembl	74_37	-1	known	missense	c.604	p.E202K	0.998	pfam_IsoPropMal-DH-like_dom,tigrfam_Isocitrate_DH_NAD	pfam_IsoPropMal-DH-like_dom,tigrfam_Isocitrate_DH_NAD	-	no_errors	IDH3G	HGNC	ENSG00000067829				118	0	0	76	18	19.1489
HCFC1	0	genome.wustl.edu	37	X	153222823	153222823	+	Silent	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	X	153222823	153222823	C	T	SNP	HCFC1	ENST00000310441	human	ensembl	74_37	-1	known	silent	c.2295	p.T765	0.660	NULL	pfam_Kelch_2,pfam_Kelch_1,superfamily_Fibronectin_type3,smart_Fibronectin_type3	-	no_errors	HCFC1	HGNC	ENSG00000172534				388	1	0.257069	219	118	35.0148
MECP2	0	genome.wustl.edu	37	X	153296142	153296142	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	X	153296142	153296142	G	A	SNP	MECP2	ENST00000303391	human	ensembl	74_37	-1	known	silent	c.1137	p.P379	0.000	pirsf_Me_CpG-bd_MeCP2	pfam_Methyl_CpG_DNA-bd,superfamily_DNA-bd_dom,superfamily_Ig_E-set,smart_Methyl_CpG_DNA-bd,pirsf_Me_CpG-bd_MeCP2,pfscan_Methyl_CpG_DNA-bd	-	no_errors	MECP2	HGNC	ENSG00000169057				82	0	0	53	7	11.6667
OPN1LW	0	genome.wustl.edu	37	X	153416152	153416152	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	X	153416152	153416152	A	G	SNP	OPN1LW	ENST00000369951	human	ensembl	74_37	+1	known	missense	c.137	p.H46R	1.000	NULL	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srw,pfscan_GPCR_Rhodpsn_7TM,prints_Opsin_red/grn,prints_GPCR_Rhodpsn,prints_Opsin	-	no_errors	OPN1LW	HGNC	ENSG00000102076				237	0	0	138	28	16.8675
OPN1LW	0	genome.wustl.edu	37	X	153416196	153416196	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	X	153416196	153416196	A	G	SNP	OPN1LW	ENST00000369951	human	ensembl	74_37	+1	known	missense	c.181	p.I61V	0.937	prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srw,pfscan_GPCR_Rhodpsn_7TM,prints_Opsin_red/grn,prints_GPCR_Rhodpsn,prints_Opsin	-	no_errors	OPN1LW	HGNC	ENSG00000102076				361	0	0	207	43	17.2
OPN1LW	0	genome.wustl.edu	37	X	153416331	153416331	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	X	153416331	153416331	G	A	SNP	OPN1LW	ENST00000369951	human	ensembl	74_37	+1	known	missense	c.316	p.A106T	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Opsin_red/grn,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srw,pfscan_GPCR_Rhodpsn_7TM,prints_Opsin_red/grn,prints_GPCR_Rhodpsn,prints_Opsin	-	no_errors	OPN1LW	HGNC	ENSG00000102076				406	0	0	259	23	8.15603
RPL10	0	genome.wustl.edu	37	X	153628915	153628915	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	X	153628915	153628915	A	G	SNP	RPL10	ENST00000344746	human	ensembl	74_37	+1	known	missense	c.440	p.H147R	1.000	pfam_Ribosomal_L10e/L16,superfamily_Ribosomal_L10e/L16,pirsf_Ribosomal_L10e,tigrfam_Ribosomal_L10e	pfam_Ribosomal_L10e/L16,superfamily_Ribosomal_L10e/L16,pirsf_Ribosomal_L10e,tigrfam_Ribosomal_L10e	-	no_errors	RPL10	HGNC	ENSG00000147403				221	0	0	102	52	33.7662
PLXNA3	0	genome.wustl.edu	37	X	153698129	153698129	+	Splice_Site	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	X	153698129	153698129	T	C	SNP	PLXNA3	ENST00000369682	human	ensembl	74_37	+1	known	splice_site	c.4795+2	e27+2	1.000	-	-	-	no_errors	PLXNA3	HGNC	ENSG00000130827				118	0	0	52	29	35.8025
VAMP7	0	genome.wustl.edu	37	X	155119126	155119126	+	RNA	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	X	155119126	155119126	A	G	SNP	VAMP7	ENST00000463317	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.998	-	-	-	no_errors	VAMP7	HGNC	ENSG00000124333				242	0	0	125	54	30.1676
ZRSR2	0	genome.wustl.edu	37	X	15841247	15841247	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	X	15841247	15841247	G	A	SNP	ZRSR2	ENST00000307771	human	ensembl	74_37	+1	known	missense	c.1331	p.R444Q	0.016	NULL	pfam_Znf_CCCH,pfam_RRM_dom,smart_Znf_CCCH,smart_RRM_dom_euk,pfscan_RRM_dom,prints_U2_small	-	no_errors	ZRSR2	HGNC	ENSG00000169249				34	0	0	22	6	21.4286
AP1S2	0	genome.wustl.edu	37	X	15864108	15864108	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	X	15864108	15864108	G	A	SNP	AP1S2	ENST00000421527	human	ensembl	74_37	-1	known	missense	c.332	p.A111V	1.000	pfam_AP_mu_sigma_su,superfamily_Longin-like_dom	pfam_AP_mu_sigma_su,superfamily_Longin-like_dom	-	no_errors	AP1S2	HGNC	ENSG00000182287				201	1	0.49505	92	42	31.3433
TXLNG	0	genome.wustl.edu	37	X	16859704	16859704	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	X	16859704	16859704	G	A	SNP	TXLNG	ENST00000380122	human	ensembl	74_37	+1	known	missense	c.1402	p.A468T	0.003	NULL	pfam_Taxilin_fam	-	no_errors	TXLNG	HGNC	ENSG00000086712				121	0	0	84	12	12.5
AKAP17A	0	genome.wustl.edu	37	X	1712692	1712692	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	X	1712692	1712692	C	T	SNP	AKAP17A	ENST00000313871	human	ensembl	74_37	+1	known	missense	c.337	p.R113C	0.979	NULL	NULL	-	no_errors	AKAP17A	HGNC	ENSG00000197976				250	0	0	108	54	33.3333
ASMT	0	genome.wustl.edu	37	X	1746672	1746672	+	RNA	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	X	1746672	1746672	C	T	SNP	ASMT	ENST00000509780	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.082	-	-	-	no_errors	ASMT	HGNC	ENSG00000196433				339	0	0	181	73	28.7402
NHS	0	genome.wustl.edu	37	X	17744154	17744154	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	X	17744154	17744154	C	T	SNP	NHS	ENST00000380060	human	ensembl	74_37	+1	known	missense	c.1865	p.S622L	1.000	NULL	NULL	-	no_errors	NHS	HGNC	ENSG00000188158				245	0	0	122	58	32.2222
BEND2	0	genome.wustl.edu	37	X	18234721	18234721	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	X	18234721	18234721	T	G	SNP	BEND2	ENST00000380033	human	ensembl	74_37	-1	known	missense	c.158	p.N53T	0.000	NULL	pfam_BEN_domain	-	no_errors	BEND2	HGNC	ENSG00000177324				168	0	0	79	40	33.6134
CDKL5	0	genome.wustl.edu	37	X	18631319	18631319	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	X	18631319	18631319	A	G	SNP	CDKL5	ENST00000379989	human	ensembl	74_37	+1	known	missense	c.2200	p.T734A	0.999	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	CDKL5	HGNC	ENSG00000008086				318	0	0	146	80	35.3982
PHKA2	0	genome.wustl.edu	37	X	18913427	18913427	+	RNA	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	X	18913427	18913427	T	C	SNP	PHKA2	ENST00000481718	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.811	-	-	-	no_errors	PHKA2	HGNC	ENSG00000044446				71	0	0	24	13	35.1351
PLCXD1	0	genome.wustl.edu	37	X	209706	209706	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	X	209706	209706	T	C	SNP	PLCXD1	ENST00000381657	human	ensembl	74_37	+1	known	missense	c.554	p.V185A	0.659	superfamily_PLC-like_Pdiesterase_TIM-brl,smart_PLipase_C_PInositol-sp_X_dom	pfam_PLipase_C_PInositol-sp_X_dom,superfamily_PLC-like_Pdiesterase_TIM-brl,smart_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_PInositol-sp_X_dom	-	no_errors	PLCXD1	HGNC	ENSG00000182378				65	0	0	27	5	15.625
ZFX	0	genome.wustl.edu	37	X	24228590	24228590	+	Silent	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	X	24228590	24228590	T	C	SNP	ZFX	ENST00000540034	human	ensembl	74_37	+1	known	silent	c.1632	p.T544	0.985	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Transcrp_activ_Zfx/Zfy-dom,pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZFX	HGNC	ENSG00000005889				197	0	0	117	57	32.7586
PDK3	0	genome.wustl.edu	37	X	24549780	24549780	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	X	24549780	24549780	T	C	SNP	PDK3	ENST00000441463	human	ensembl	74_37	+1	known	missense	c.970	p.F324L	1.000	pfam_HATPase_ATP-bd,superfamily_HATPase_ATP-bd,smart_HATPase_ATP-bd,pfscan_Sig_transdc_His_kinase_core	pfam_BCDHK/PDK_N,pfam_HATPase_ATP-bd,superfamily_BCDHK/PDK_N,superfamily_HATPase_ATP-bd,smart_HATPase_ATP-bd,pfscan_Sig_transdc_His_kinase_core	-	no_errors	PDK3	HGNC	ENSG00000067992				285	0	0	163	86	34.5382
PCYT1B	0	genome.wustl.edu	37	X	24608229	24608229	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	X	24608229	24608229	A	T	SNP	PCYT1B	ENST00000379144	human	ensembl	74_37	-1	known	missense	c.397	p.Y133N	1.000	pfam_Cyt_trans-like,tigrfam_Cyt_trans-like	pfam_Cyt_trans-like,tigrfam_Cyt_trans-like	-	no_errors	PCYT1B	HGNC	ENSG00000102230				80	0	0	32	18	36
GYG2	0	genome.wustl.edu	37	X	2773049	2773049	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	X	2773049	2773049	G	A	SNP	GYG2	ENST00000381163	human	ensembl	74_37	+1	known	missense	c.433	p.D145N	0.992	pfam_Glyco_trans_8	pfam_Glyco_trans_8	-	no_errors	GYG2	HGNC	ENSG00000056998				129	0	0	68	17	20
DCAF8L2	0	genome.wustl.edu	37	X	27766824	27766824	+	Silent	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	X	27766824	27766824	A	G	SNP	DCAF8L2	ENST00000451261	human	ensembl	74_37	+1	known	silent	c.1812	p.P604	0.026	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DCAF8L2	HGNC	ENSG00000189186				39	0	0	9	5	35.7143
ARSE	0	genome.wustl.edu	37	X	2854853	2854853	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	X	2854853	2854853	G	A	SNP	ARSE	ENST00000545496	human	ensembl	74_37	-1	known	silent	c.1416	p.H472	0.505	pfam_Sulfatase,superfamily_Alkaline_phosphatase_core	pfam_Sulfatase,pfam_Phosphodiest/P_Trfase,superfamily_Alkaline_phosphatase_core	-	no_errors	ARSE	HGNC	ENSG00000157399				81	0	0	63	4	5.97015
GK	0	genome.wustl.edu	37	X	30686191	30686191	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	X	30686191	30686191	G	A	SNP	GK	ENST00000378943	human	ensembl	74_37	+1	known	missense	c.215	p.C72Y	1.000	pfam_Carb_kinase_FGGY_N,tigrfam_Glycerol_kin	pfam_Carb_kinase_FGGY_N,pfam_Carb_kinase_FGGY_C,tigrfam_Glycerol_kin	-	no_errors	GK	HGNC	ENSG00000198814				109	0	0	68	13	16.0494
MXRA5	0	genome.wustl.edu	37	X	3228469	3228469	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	X	3228469	3228469	C	T	SNP	MXRA5	ENST00000217939	human	ensembl	74_37	-1	known	missense	c.7775	p.R2592H	0.038	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	MXRA5	HGNC	ENSG00000101825				31	0	0	15	6	28.5714
DMD	0	genome.wustl.edu	37	X	32613901	32613901	+	Silent	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	X	32613901	32613901	T	C	SNP	DMD	ENST00000357033	human	ensembl	74_37	-1	known	silent	c.1575	p.A525	0.998	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin,pirsf_Dystrophin/utrophin	pfam_Spectrin_repeat,pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_CH-domain,pfam_Znf_ZZ,pfam_WW_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_WW_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_WW_dom,smart_Znf_ZZ,pirsf_Dystrophin/utrophin,pfscan_CH-domain,pfscan_WW_dom,pfscan_Znf_ZZ	-	no_errors	DMD	HGNC	ENSG00000198947				93	0	0	41	21	33.871
DMD	0	genome.wustl.edu	37	X	32613904	32613904	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	X	32613904	32613904	G	A	SNP	DMD	ENST00000357033	human	ensembl	74_37	-1	known	silent	c.1572	p.H524	0.043	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin,pirsf_Dystrophin/utrophin	pfam_Spectrin_repeat,pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_CH-domain,pfam_Znf_ZZ,pfam_WW_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_WW_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_WW_dom,smart_Znf_ZZ,pirsf_Dystrophin/utrophin,pfscan_CH-domain,pfscan_WW_dom,pfscan_Znf_ZZ	-	no_errors	DMD	HGNC	ENSG00000198947				93	0	0	45	15	25
CXorf22	0	genome.wustl.edu	37	X	35969405	35969405	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	X	35969405	35969405	G	A	SNP	CXorf22	ENST00000297866	human	ensembl	74_37	+1	known	missense	c.814	p.V272I	0.000	NULL	superfamily_PapD-like	-	no_errors	CXorf22	HGNC	ENSG00000165164				95	0	0	56	21	27.2727
FAM47C	0	genome.wustl.edu	37	X	37027011	37027011	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	X	37027011	37027011	G	A	SNP	FAM47C	ENST00000358047	human	ensembl	74_37	+1	known	silent	c.528	p.T176	0.000	NULL	NULL	-	no_errors	FAM47C	HGNC	ENSG00000198173				80	0	0	28	14	33.3333
CXorf27	0	genome.wustl.edu	37	X	37850373	37850373	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	X	37850373	37850373	A	G	SNP	CXorf27	ENST00000341016	human	ensembl	74_37	+1	known	missense	c.281	p.E94G	0.001	superfamily_Histone-fold	superfamily_Histone-fold	-	no_errors	CXorf27	HGNC	ENSG00000187516				73	0	0	43	19	30.6452
BCOR	0	genome.wustl.edu	37	X	39932568	39932568	+	Silent	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	X	39932568	39932568	T	C	SNP	BCOR	ENST00000378444	human	ensembl	74_37	-1	known	silent	c.2031	p.G677	0.981	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	BCOR	HGNC	ENSG00000183337				69	0	0	18	10	35.7143
BCOR	0	genome.wustl.edu	37	X	39934153	39934153	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	X	39934153	39934153	T	C	SNP	BCOR	ENST00000378444	human	ensembl	74_37	-1	known	missense	c.446	p.Y149C	1.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	BCOR	HGNC	ENSG00000183337				119	0	0	80	6	6.97674
ATP6AP2	0	genome.wustl.edu	37	X	40456500	40456500	+	Splice_Site	SNP	G	G	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	X	40456500	40456500	G	T	SNP	ATP6AP2	ENST00000378438	human	ensembl	74_37	+1	known	splice_site	c.301-1	e4-1	1.000	-	-	-	no_errors	ATP6AP2	HGNC	ENSG00000182220				150	0	0	101	11	9.82143
USP9X	0	genome.wustl.edu	37	X	41000617	41000617	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	X	41000617	41000617	T	C	SNP	USP9X	ENST00000324545	human	ensembl	74_37	+1	known	missense	c.1094	p.V365A	0.999	superfamily_ARM-type_fold	pfam_Peptidase_C19/C67,superfamily_ARM-type_fold,pfscan_Peptidase_C19/C67	-	no_errors	USP9X	HGNC	ENSG00000124486				56	0	0	21	13	38.2353
DDX3X	0	genome.wustl.edu	37	X	41201791	41201791	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	X	41201791	41201791	C	T	SNP	DDX3X	ENST00000399959	human	ensembl	74_37	+1	known	missense	c.328	p.R110C	1.000	NULL	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX3X	HGNC	ENSG00000215301				157	0	0	87	29	25
NYX	0	genome.wustl.edu	37	X	41331639	41331639	+	RNA	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	X	41331639	41331639	T	C	SNP	NYX	ENST00000486842	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.958	-	-	-	no_errors	NYX	HGNC	ENSG00000188937				61	0	0	21	6	22.2222
ELK1	0	genome.wustl.edu	37	X	47497513	47497513	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	X	47497513	47497513	G	A	SNP	ELK1	ENST00000247161	human	ensembl	74_37	-1	known	silent	c.723	p.G241	0.019	NULL	pfam_Ets_dom,smart_Ets_dom,pfscan_Ets_dom,prints_Ets_dom	-	no_errors	ELK1	HGNC	ENSG00000126767				65	0	0	27	12	30.7692
ELK1	0	genome.wustl.edu	37	X	47497563	47497563	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	X	47497563	47497563	C	T	SNP	ELK1	ENST00000247161	human	ensembl	74_37	-1	known	missense	c.673	p.E225K	0.984	NULL	pfam_Ets_dom,smart_Ets_dom,pfscan_Ets_dom,prints_Ets_dom	-	no_errors	ELK1	HGNC	ENSG00000126767				40	0	0	26	6	18.75
ZNF81	0	genome.wustl.edu	37	X	47774714	47774714	+	Silent	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	X	47774714	47774714	T	C	SNP	ZNF81	ENST00000338637	human	ensembl	74_37	+1	known	silent	c.669	p.H223	0.160	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF81	HGNC	ENSG00000197779				201	1	0.49505	96	36	27.2727
SUV39H1	0	genome.wustl.edu	37	X	48558747	48558747	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	X	48558747	48558747	G	A	SNP	SUV39H1	ENST00000337852	human	ensembl	74_37	+1	known	missense	c.464	p.R155H	1.000	pfam_Pre-SET_dom,smart_Pre-SET_Zn-bd_sub,pirsf_Histone_H3-K9_MeTrfase	pfam_SET_dom,pfam_Pre-SET_dom,pfam_Chromo_domain,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Pre-SET_Zn-bd_sub,smart_SET_dom,smart_Post-SET_dom,pirsf_Histone_H3-K9_MeTrfase,pfscan_SET_dom,pfscan_Pre-SET_dom,pfscan_Post-SET_dom,pfscan_Chromo_domain/shadow	-	no_errors	SUV39H1	HGNC	ENSG00000101945				86	0	0	43	19	30.6452
GATA1	0	genome.wustl.edu	37	X	48649665	48649665	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	X	48649665	48649665	C	T	SNP	GATA1	ENST00000376670	human	ensembl	74_37	+1	known	missense	c.149	p.P50L	0.001	pirsf_TF_GATA-1/2/3	pfam_Znf_GATA,smart_Znf_GATA,pirsf_TF_GATA-1/2/3,pfscan_Znf_GATA,prints_Znf_GATA	-	no_errors	GATA1	HGNC	ENSG00000102145				28	0	0	12	3	20
HDAC6	0	genome.wustl.edu	37	X	48673824	48673824	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	X	48673824	48673824	G	A	SNP	HDAC6	ENST00000444343	human	ensembl	74_37	+1	known	missense	c.1225	p.V409I	0.996	pfam_His_deacetylse_dom	pfam_His_deacetylse_dom,pfam_Znf_UBP,smart_Znf_UBP,pfscan_Znf_UBP,prints_His_deacetylse	-	no_errors	HDAC6	HGNC	ENSG00000094631				26	0	0	22	10	31.25
CCDC22	0	genome.wustl.edu	37	X	49093645	49093645	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	X	49093645	49093645	C	T	SNP	CCDC22	ENST00000376227	human	ensembl	74_37	+1	known	missense	c.143	p.A48V	0.051	pfam_DUF812	pfam_DUF812	-	no_errors	CCDC22	HGNC	ENSG00000101997				119	0	0	56	24	30
AKAP4	0	genome.wustl.edu	37	X	49958505	49958505	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	X	49958505	49958505	G	A	SNP	AKAP4	ENST00000358526	human	ensembl	74_37	-1	known	missense	c.859	p.R287C	0.978	pfam_AKAP_110_C,smart_AKAP_110	pfam_AKAP_110_C,pfam_RII_binding_1,smart_AKAP_110	-	no_errors	AKAP4	HGNC	ENSG00000147081				127	0	0	51	30	37.037
GPR173	0	genome.wustl.edu	37	X	53106197	53106197	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	X	53106197	53106197	G	A	SNP	GPR173	ENST00000332582	human	ensembl	74_37	+1	known	missense	c.394	p.A132T	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	-	no_errors	GPR173	HGNC	ENSG00000184194				140	0	0	56	36	39.1304
KDM5C	0	genome.wustl.edu	37	X	53227772	53227772	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	X	53227772	53227772	A	G	SNP	KDM5C	ENST00000375401	human	ensembl	74_37	-1	known	missense	c.2416	p.F806L	1.000	pfam_Lys_sp_deMease_like_dom	pfam_Lys_sp_deMease_like_dom,pfam_JmjC_dom,pfam_ARID/BRIGHT_DNA-bd,pfam_Znf_C5HC2,pfam_Znf_PHD-finger,pfam_TF_JmjN,superfamily_ARID/BRIGHT_DNA-bd,superfamily_Znf_FYVE_PHD,smart_TF_JmjN,smart_ARID/BRIGHT_DNA-bd,smart_Znf_PHD,smart_JmjC_dom,pfscan_TF_JmjN,pfscan_JmjC_dom,pfscan_Znf_PHD-finger,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	KDM5C	HGNC	ENSG00000126012				66	0	0	24	11	31.4286
HUWE1	0	genome.wustl.edu	37	X	53630414	53630414	+	Silent	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	X	53630414	53630414	G	A	SNP	HUWE1	ENST00000262854	human	ensembl	74_37	-1	known	silent	c.2791	p.L931	0.998	NULL	pfam_E3_Ub_ligase_DUF913,pfam_HECT,pfam_E3_Ub_ligase_DUF908,pfam_WWE-dom,pfam_UBA/Ts_N,superfamily_HECT,superfamily_UBA-like,superfamily_ARM-type_fold,smart_UBA/transl_elong_EF1B_N_euk,smart_HECT,pfscan_HECT,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_WWE-dom	-	no_errors	HUWE1	HGNC	ENSG00000086758				93	0	0	35	18	33.9623
WNK3	0	genome.wustl.edu	37	X	54224914	54224914	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	X	54224914	54224914	C	T	SNP	WNK3	ENST00000354646	human	ensembl	74_37	-1	known	missense	c.5246	p.G1749E	0.829	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Kinase_OSR1/WNK_CCT,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	WNK3	HGNC	ENSG00000196632				87	0	0	42	17	28.8136
WNK3	0	genome.wustl.edu	37	X	54263437	54263437	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	X	54263437	54263437	C	T	SNP	WNK3	ENST00000354646	human	ensembl	74_37	-1	known	missense	c.4562	p.S1521N	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Kinase_OSR1/WNK_CCT,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	WNK3	HGNC	ENSG00000196632				520	0	0	258	103	28.5319
WNK3	0	genome.wustl.edu	37	X	54319444	54319444	+	Silent	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	X	54319444	54319444	C	T	SNP	WNK3	ENST00000354646	human	ensembl	74_37	-1	known	silent	c.1914	p.Q638	0.949	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Kinase_OSR1/WNK_CCT,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	WNK3	HGNC	ENSG00000196632				99	0	0	42	16	27.5862
APEX2	0	genome.wustl.edu	37	X	55029534	55029534	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	X	55029534	55029534	G	A	SNP	APEX2	ENST00000374987	human	ensembl	74_37	+1	known	missense	c.562	p.A188T	0.981	pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase,tigrfam_AP_endonuc_1	pfam_Endo/exonuclease/phosphatase,pfam_Znf_GRF,superfamily_Endo/exonuclease/phosphatase,tigrfam_AP_endonuc_1	-	no_errors	APEX2	HGNC	ENSG00000169188				90	0	0	40	22	35.4839
ENSG00000232765	0	genome.wustl.edu	37	X	55315182	55315182	+	RNA	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	X	55315182	55315182	G	A	SNP	ENSG00000232765	ENST00000440645	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RP11-382F24.2	Clone_based_vega_gene	ENSG00000232765				21	0	0	10	7	41.1765
USP51	0	genome.wustl.edu	37	X	55514918	55514918	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	X	55514918	55514918	C	T	SNP	USP51	ENST00000500968	human	ensembl	74_37	-1	known	missense	c.455	p.R152H	0.030	NULL	pfam_Peptidase_C19/C67,pfam_Znf_UBP,pfscan_Znf_UBP,pfscan_Peptidase_C19/C67	-	no_errors	USP51	HGNC	ENSG00000247746				39	0	0	14	6	30
FAAH2	0	genome.wustl.edu	37	X	57337164	57337164	+	Splice_Site	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	X	57337164	57337164	T	C	SNP	FAAH2	ENST00000374900	human	ensembl	74_37	+1	known	splice_site	c.412+2	e3+2	0.736	-	-	-	no_errors	FAAH2	HGNC	ENSG00000165591				131	0	0	44	21	32.3077
SPIN4	0	genome.wustl.edu	37	X	62570001	62570001	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	X	62570001	62570001	T	G	SNP	SPIN4	ENST00000335144	human	ensembl	74_37	-1	known	missense	c.698	p.K233T	1.000	pfam_Spin_Ssty	pfam_Spin_Ssty	-	no_errors	SPIN4	HGNC	ENSG00000186767				188	0	0	103	13	11.2069
HEPH	0	genome.wustl.edu	37	X	65415012	65415012	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	X	65415012	65415012	G	T	SNP	HEPH	ENST00000519389	human	ensembl	74_37	+1	known	missense	c.1604	p.S535I	1.000	pfam_Cu-oxidase_3,superfamily_Cupredoxin	pfam_Cu-oxidase_3,pfam_Cu-oxidase_2,superfamily_Cupredoxin	-	no_errors	HEPH	HGNC	ENSG00000089472				110	0	0	45	17	27.4194
OPHN1	0	genome.wustl.edu	37	X	67333078	67333078	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	X	67333078	67333078	A	T	SNP	OPHN1	ENST00000355520	human	ensembl	74_37	-1	known	missense	c.1365	p.N455K	1.000	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_Pleckstrin_homology,smart_RhoGAP_dom,pfscan_Pleckstrin_homology,pfscan_RhoGAP_dom	-	no_errors	OPHN1	HGNC	ENSG00000079482				72	0	0	62	5	7.46269
CITED1	0	genome.wustl.edu	37	X	71522015	71522015	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	X	71522015	71522015	T	C	SNP	CITED1	ENST00000431381	human	ensembl	74_37	-1	known	missense	c.218	p.Y73C	0.999	pfam_CITED	pfam_CITED	-	no_errors	CITED1	HGNC	ENSG00000125931				19	0	0	9	5	35.7143
XIST	0	genome.wustl.edu	37	X	73044491	73044491	+	RNA	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	X	73044491	73044491	C	T	SNP	XIST	ENST00000429829	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.010	-	-	-	no_errors	XIST	HGNC	ENSG00000229807				39	0	0	14	11	44
XIST	0	genome.wustl.edu	37	X	73046077	73046077	+	RNA	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	X	73046077	73046077	C	T	SNP	XIST	ENST00000416330	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.033	-	-	-	no_errors	XIST	HGNC	ENSG00000229807				210	0	0	108	39	26.5306
XIST	0	genome.wustl.edu	37	X	73071875	73071875	+	RNA	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	X	73071875	73071875	G	A	SNP	XIST	ENST00000429829	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.924	-	-	-	no_errors	XIST	HGNC	ENSG00000229807				38	0	0	13	6	31.5789
KIAA2022	0	genome.wustl.edu	37	X	73961874	73961874	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	X	73961874	73961874	G	T	SNP	KIAA2022	ENST00000055682	human	ensembl	74_37	-1	known	missense	c.2518	p.Q840K	1.000	NULL	NULL	-	no_errors	KIAA2022	HGNC	ENSG00000050030				320	0	0	193	16	7.6555
ABCB7	0	genome.wustl.edu	37	X	74318830	74318830	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	X	74318830	74318830	G	A	SNP	ABCB7	ENST00000253577	human	ensembl	74_37	-1	known	missense	c.403	p.P135S	1.000	superfamily_ABC1_TM_dom	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_P-loop_NTPase,superfamily_ABC1_TM_dom,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom	-	no_errors	ABCB7	HGNC	ENSG00000131269				214	0	0	111	49	30.625
ATRX	0	genome.wustl.edu	37	X	76875932	76875932	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	X	76875932	76875932	T	C	SNP	ATRX	ENST00000373344	human	ensembl	74_37	-1	known	missense	c.5203	p.M1735V	1.000	pfam_SNF2_N,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_SNF2_N,pfam_Helicase_C,superfamily_P-loop_NTPase,superfamily_Znf_FYVE_PHD,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	ATRX	HGNC	ENSG00000085224				55	0	0	40	4	9.09091
LPAR4	0	genome.wustl.edu	37	X	78010974	78010974	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	X	78010974	78010974	A	G	SNP	LPAR4	ENST00000435339	human	ensembl	74_37	+1	known	missense	c.608	p.K203R	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	-	no_errors	LPAR4	HGNC	ENSG00000147145				185	0	0	89	30	25.2101
SATL1	0	genome.wustl.edu	37	X	84363505	84363505	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	X	84363505	84363505	C	T	SNP	SATL1	ENST00000509231	human	ensembl	74_37	-1	known	missense	c.470	p.G157D	0.000	NULL	superfamily_Acyl_CoA_acyltransferase	-	no_errors	SATL1	HGNC	ENSG00000184788				93	0	0	62	8	11.4286
CHM	0	genome.wustl.edu	37	X	85218946	85218946	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	X	85218946	85218946	C	A	SNP	CHM	ENST00000357749	human	ensembl	74_37	-1	known	missense	c.426	p.E142D	0.001	pirsf_Rab_geranylTrfase_A_euk	pfam_GDP_dissociation_inhibitor,pirsf_Rab_geranylTrfase_A_euk,prints_Rab_escort,prints_GDP_dissociation_inhibitor	-	no_errors	CHM	HGNC	ENSG00000188419				174	0	0	119	22	15.6028
DIAPH2	0	genome.wustl.edu	37	X	96213149	96213149	+	Splice_Site	SNP	T	T	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	X	96213149	96213149	T	C	SNP	DIAPH2	ENST00000324765	human	ensembl	74_37	+1	known	splice_site	c.1935+2	e16+2	1.000	-	-	-	no_errors	DIAPH2	HGNC	ENSG00000147202				102	0	0	71	7	8.97436
SHROOM2	0	genome.wustl.edu	37	X	9900831	9900831	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	X	9900831	9900831	C	T	SNP	SHROOM2	ENST00000380913	human	ensembl	74_37	+1	known	missense	c.3508	p.R1170C	0.972	NULL	pfam_ASD2,pfam_ASD1,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	SHROOM2	HGNC	ENSG00000146950				139	0	0	71	28	28.2828
SRPX2	0	genome.wustl.edu	37	X	99919891	99919891	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	X	99919891	99919891	G	A	SNP	SRPX2	ENST00000373004	human	ensembl	74_37	+1	known	missense	c.476	p.R159H	1.000	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Hyalin,pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,superfamily_Thioredoxin-like_fold,smart_Sushi_SCR_CCP,pfscan_Hyalin,pfscan_Sushi_SCR_CCP	-	no_errors	SRPX2	HGNC	ENSG00000102359				31	0	0	14	7	33.3333
SASS6	0	genome.wustl.edu	37	1	100588802	100588802	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	100588802	100588802	A	-	DEL	SASS6	ENST00000287482	human	ensembl	74_37	-1	known	frame_shift_del	c.170	p.L57fs	1.000	NULL	NULL	-	no_errors	SASS6	HGNC	ENSG00000156876				57	0	0	31	3	8.82353
EXTL2	0	genome.wustl.edu	37	1	101354290	101354290	+	RNA	DEL	A	A	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	101354290	101354290	A	-	DEL	EXTL2	ENST00000480774	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.231	-	-	-	no_errors	EXTL2	HGNC	ENSG00000162694				31	0	0	14	7	33.3333
COL11A1	0	genome.wustl.edu	37	1	103364506	103364506	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	103364506	103364506	T	-	DEL	COL11A1	ENST00000358392	human	ensembl	74_37	-1	known	frame_shift_del	c.4167	p.G1390fs	1.000	NULL	pfam_Collagen,pfam_Fib_collagen_C,pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,superfamily_Fibrinogen_a/b/g_C_dom,smart_Laminin_G,smart_Fib_collagen_C	-	no_errors	COL11A1	HGNC	ENSG00000060718				80	0	0	56	8	12.5
AMPD2	0	genome.wustl.edu	37	1	110169810	110169810	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	110169810	110169810	C	-	DEL	AMPD2	ENST00000256578	human	ensembl	74_37	+1	known	frame_shift_del	c.894	p.P300fs	1.000	pirsf_AMP_deaminase,tigrfam_AMP_deaminase	pfam_A/AMP_deaminase_dom,pirsf_AMP_deaminase,tigrfam_AMP_deaminase	-	no_errors	AMPD2	HGNC	ENSG00000116337				180	0	0	102	27	20.9302
GSTM3	0	genome.wustl.edu	37	1	110279894	110279894	+	RNA	DEL	T	T	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	110279894	110279894	T	-	DEL	GSTM3	ENST00000476321	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.004	-	-	-	no_errors	GSTM3	HGNC	ENSG00000134202				17	0	0	7	6	46.1538
CEPT1	0	genome.wustl.edu	37	1	111690320	111690320	+	RNA	DEL	A	A	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	111690320	111690320	A	-	DEL	CEPT1	ENST00000460443	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.005	-	-	-	no_errors	CEPT1	HGNC	ENSG00000134255				69	0	0	25	10	28.5714
SYCP1	0	genome.wustl.edu	37	1	115537601	115537601	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	115537601	115537601	A	-	DEL	SYCP1	ENST00000369518	human	ensembl	74_37	+1	known	frame_shift_del	c.2892	p.K967fs	1.000	NULL	pfam_SCP-1	-	no_errors	SYCP1	HGNC	ENSG00000198765				137	0	0	99	30	23.2558
ATP1A1	0	genome.wustl.edu	37	1	116936320	116936320	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	116936320	116936320	G	-	DEL	ATP1A1	ENST00000295598	human	ensembl	74_37	+1	known	frame_shift_del	c.1635	p.G547fs	1.000	pfam_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,superfamily_HAD-like_dom,tigrfam_ATPase_P-typ_Na/K_IIC	pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_cation-transptr_C,pfam_HAD-like_dom,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_P-typ_cyto_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Na/K_IIC,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP1A1	HGNC	ENSG00000163399				106	0	0	52	7	11.8644
VPS13D	0	genome.wustl.edu	37	1	12364654	12364655	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	12364654	12364655	-	G	INS	VPS13D	ENST00000358136	human	ensembl	74_37	+1	known	frame_shift_ins	c.6308_6309	p.Q2105fs	0.742:0.915	NULL	pfam_VPSAP_dom,pfam_UBA/Ts_N,superfamily_UBA-like,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk	-	no_errors	VPS13D	HGNC	ENSG00000048707				129	0	0	84	26	23.6364
NBPF10	0	genome.wustl.edu	37	1	145367737	145367737	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	145367737	145367737	A	-	DEL	NBPF10	ENST00000342960	human	ensembl	74_37	+1	known	frame_shift_del	c.10333	p.R3447fs	0.003	NULL	pfam_NBPF_dom	-	no_errors	NBPF10	HGNC	ENSG00000163386				227	0	0	175	11	5.91398
MTMR11	0	genome.wustl.edu	37	1	149900986	149900989	+	RNA	DEL	AAAA	AAAA	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	AAAA	AAAA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	149900986	149900989	AAAA	-	DEL	MTMR11	ENST00000466496	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000:0.002:0.003:0.001	-	-	-	no_errors	MTMR11	HGNC	ENSG00000014914				138	0	0	57	18	24
RPRD2	0	genome.wustl.edu	37	1	150445908	150445908	+	RNA	DEL	T	T	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	150445908	150445908	T	-	DEL	RPRD2	ENST00000492220	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.276	-	-	-	no_errors	RPRD2	HGNC	ENSG00000163125				30	0	0	9	6	40
HORMAD1	0	genome.wustl.edu	37	1	150686529	150686529	+	RNA	DEL	A	A	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	150686529	150686529	A	-	DEL	HORMAD1	ENST00000476530	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.036	-	-	-	no_errors	HORMAD1	HGNC	ENSG00000143452				60	0	0	28	10	26.3158
SELENBP1	0	genome.wustl.edu	37	1	151341565	151341568	+	Frame_Shift_Del	DEL	GTGC	GTGC	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	GTGC	GTGC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	151341565	151341568	GTGC	-	DEL	SELENBP1	ENST00000426705	human	ensembl	74_37	-1	known	frame_shift_del	c.401_398	p.R133fs	0.999:1.000:1.000:1.000	pfam_Se-bd	pfam_Se-bd	-	no_errors	SELENBP1	HGNC	ENSG00000143416				148	1	0.671141	99	14	12.3894
TDRD10	0	genome.wustl.edu	37	1	154520288	154520288	+	RNA	DEL	A	A	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	154520288	154520288	A	-	DEL	TDRD10	ENST00000479937	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.015	-	-	-	no_errors	TDRD10	HGNC	ENSG00000163239				53	0	0	28	8	22.2222
GON4L	0	genome.wustl.edu	37	1	155785777	155785778	+	RNA	DEL	AA	AA	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	155785777	155785778	AA	-	DEL	GON4L	ENST00000471341	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	GON4L	HGNC	ENSG00000116580				14	0	0	6	3	33.3333
KCNJ10	0	genome.wustl.edu	37	1	160012018	160012018	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	160012018	160012018	G	-	DEL	KCNJ10	ENST00000368089	human	ensembl	74_37	-1	known	frame_shift_del	c.305	p.P102fs	0.995	pfam_K_chnl_inward-rec_Kir,pirsf_K_chnl_inward-rec_Kir	pfam_K_chnl_inward-rec_Kir,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir1.2,prints_K_chnl_inward-rec_Kir1.1	-	no_errors	KCNJ10	HGNC	ENSG00000177807				194	0	0	96	25	20.6612
ATP1A2	0	genome.wustl.edu	37	1	160100055	160100056	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	160100055	160100056	-	G	INS	ATP1A2	ENST00000361216	human	ensembl	74_37	+1	known	frame_shift_ins	c.1625_1626	p.L545fs	1.000:1.000	pfam_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,superfamily_HAD-like_dom,tigrfam_ATPase_P-typ_Na/K_IIC	pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_cation-transptr_C,pfam_HAD-like_dom,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_P-typ_cyto_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Na/K_IIC,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP1A2	HGNC	ENSG00000018625				191	0	0	111	25	18.3824
NCSTN	0	genome.wustl.edu	37	1	160313199	160313199	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	160313199	160313199	G	-	DEL	NCSTN	ENST00000294785	human	ensembl	74_37	+1	known	frame_shift_del	c.13	p.G6fs	0.915	NULL	pfam_Nicastrin	-	no_errors	NCSTN	HGNC	ENSG00000162736				61	0	0	38	5	11.6279
HSPA6	0	genome.wustl.edu	37	1	161495044	161495044	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	161495044	161495044	T	-	DEL	HSPA6	ENST00000309758	human	ensembl	74_37	+1	known	frame_shift_del	c.596	p.F200fs	0.995	pfam_Hsp_70_fam,pfam_MreB_Mrl	pfam_Hsp_70_fam,pfam_MreB_Mrl,prints_Hsp_70_fam	-	no_errors	HSPA6	HGNC	ENSG00000173110				98	0	0	52	14	21.2121
POU2F1	0	genome.wustl.edu	37	1	167368478	167368478	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	167368478	167368478	A	-	DEL	POU2F1	ENST00000367866	human	ensembl	74_37	+1	known	frame_shift_del	c.1325	p.E444fs	1.000	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_POU	pfam_POU_specific,pfam_Homeobox_dom,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,smart_POU_specific,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_POU_specific,prints_POU,prints_TF_octamer	-	no_errors	POU2F1	HGNC	ENSG00000143190				235	0	0	121	41	25.3086
SCYL3	0	genome.wustl.edu	37	1	169823471	169823472	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	169823471	169823472	-	T	INS	SCYL3	ENST00000367770	human	ensembl	74_37	-1	known	frame_shift_ins	c.2109_2108	p.D704fs	0.001:0.001	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_HEAT_type_2,pfscan_Prot_kinase_dom	-	no_errors	SCYL3	HGNC	ENSG00000000457				251	0	0	151	17	10.119
ABL2	0	genome.wustl.edu	37	1	179077894	179077894	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	179077894	179077894	T	-	DEL	ABL2	ENST00000502732	human	ensembl	74_37	-1	known	frame_shift_del	c.2508	p.K836fs	1.000	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_F-actin_binding,pfam_Prot_kinase_dom,pfam_SH2,pfam_SH3_domain,pfam_SH3_2,pfam_SH3-like_bac-type,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_SH3_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_F-actin_binding,pfscan_SH2,pfscan_SH3_domain,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2	-	no_errors	ABL2	HGNC	ENSG00000143322				219	0	0	119	36	23.2258
KIAA1614	0	genome.wustl.edu	37	1	180905051	180905051	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	180905051	180905051	G	-	DEL	KIAA1614	ENST00000367588	human	ensembl	74_37	+1	known	frame_shift_del	c.2006	p.G670fs	0.000	NULL	NULL	-	no_errors	KIAA1614	HGNC	ENSG00000135835				170	1	0.584795	81	38	31.9328
GLUL	0	genome.wustl.edu	37	1	182355541	182355542	+	RNA	INS	-	-	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	182355541	182355542	-	A	INS	GLUL	ENST00000491322	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.011:0.265	-	-	-	no_errors	GLUL	HGNC	ENSG00000135821				270	0	0	146	48	24.7423
HMCN1	0	genome.wustl.edu	37	1	186094843	186094843	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	186094843	186094843	A	-	DEL	HMCN1	ENST00000271588	human	ensembl	74_37	+1	known	frame_shift_del	c.12607	p.D4205fs	1.000	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_G2_nidogen/fibulin_G2F,pfam_EGF-like_Ca-bd_dom,pfam_Thrombospondin_1_rpt,superfamily_GFP,superfamily_Thrombospondin_1_rpt,superfamily_Growth_fac_rcpt_N_dom,superfamily_Cadherin-like,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Thrombospondin_1_rpt,smart_G2_nidogen/fibulin_G2F,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_G2_nidogen/fibulin_G2F,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like_dom	-	no_errors	HMCN1	HGNC	ENSG00000143341				171	0	0	79	31	28.1818
PRG4	0	genome.wustl.edu	37	1	186277364	186277364	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	186277364	186277364	C	-	DEL	PRG4	ENST00000445192	human	ensembl	74_37	+1	known	frame_shift_del	c.2513	p.K840fs	0.000	NULL	pfam_Somatomedin_B_dom,pfam_Hemopexin-like_repeat,superfamily_Hemopexin-like_dom,smart_Somatomedin_B_dom,smart_Hemopexin-like_repeat,prints_Somatomedin_B_chordata,pfscan_Somatomedin_B_dom	-	no_errors	PRG4	HGNC	ENSG00000116690				636	0	0	393	55	12.2768
TROVE2	0	genome.wustl.edu	37	1	193053997	193053999	+	RNA	DEL	AAA	AAA	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	AAA	AAA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	193053997	193053999	AAA	-	DEL	TROVE2	ENST00000460715	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000:0.002:0.000	-	-	-	no_errors	TROVE2	HGNC	ENSG00000116747				22	0	0	5	4	44.4444
DDX59	0	genome.wustl.edu	37	1	200594042	200594042	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	200594042	200594042	T	-	DEL	DDX59	ENST00000447706	human	ensembl	74_37	-1	known	frame_shift_del	c.1730	p.N577fs	0.001	pfscan_Helicase_C	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,pfam_Znf_HIT,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX59	HGNC	ENSG00000118197				117	0	0	75	21	21.875
KDM5B	0	genome.wustl.edu	37	1	202710852	202710853	+	Splice_Site	INS	-	-	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	202710852	202710853	-	A	INS	KDM5B	ENST00000367264	human	ensembl	74_37	-1	known	splice_site_ins	c.2698-3_2698-2	e20-2	1.000:0.010	-	-	-	no_errors	KDM5B	HGNC	ENSG00000117139				68	0	0	48	7	12.7273
PLEKHA6	0	genome.wustl.edu	37	1	204228411	204228411	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	204228411	204228411	C	-	DEL	PLEKHA6	ENST00000272203	human	ensembl	74_37	-1	known	frame_shift_del	c.982	p.V328fs	0.000	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	PLEKHA6	HGNC	ENSG00000143850				109	0	0	73	20	21.5054
DYRK3	0	genome.wustl.edu	37	1	206821441	206821441	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	206821441	206821441	A	-	DEL	DYRK3	ENST00000367109	human	ensembl	74_37	+1	known	frame_shift_del	c.898	p.N302fs	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	DYRK3	HGNC	ENSG00000143479				290	0	0	158	58	26.8519
CD34	0	genome.wustl.edu	37	1	208063101	208063102	+	Frame_Shift_Del	DEL	AA	AA	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	208063101	208063102	AA	-	DEL	CD34	ENST00000367036	human	ensembl	74_37	-1	known	frame_shift_del	c.82_81	p.S28fs	0.000:0.000	NULL	pfam_CD34/Podocalyxin,prints_CD34	-	no_errors	CD34	HGNC	ENSG00000174059				48	0	0	22	8	26.6667
DUSP10	0	genome.wustl.edu	37	1	221875678	221875678	+	RNA	DEL	A	A	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	221875678	221875678	A	-	DEL	DUSP10	ENST00000468085	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	DUSP10	HGNC	ENSG00000143507				155	0	0	89	6	6.31579
ACBD3	0	genome.wustl.edu	37	1	226352491	226352491	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	226352491	226352491	T	-	DEL	ACBD3	ENST00000366812	human	ensembl	74_37	-1	known	frame_shift_del	c.568	p.R190fs	1.000	NULL	pfam_Acyl-CoA-binding_protein,superfamily_GOLD,superfamily_Acyl-CoA-binding_protein,pfscan_GOLD	-	no_errors	ACBD3	HGNC	ENSG00000182827				155	0	0	92	36	28.125
ARF1	0	genome.wustl.edu	37	1	228284858	228284858	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	228284858	228284858	A	-	DEL	ARF1	ENST00000272102	human	ensembl	74_37	+1	known	frame_shift_del	c.43	p.E17fs	1.000	pfam_Small_GTPase_ARF/SAR,pfam_SRP_receptor_beta_su,superfamily_P-loop_NTPase,smart_Small_GTPase_SAR1,smart_Small_GTPase_ARF,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase_ARF/SAR,pfam_SRP_receptor_beta_su,pfam_Small_GTPase,pfam_Gtr1_RagA,pfam_Gprotein_alpha_su,pfam_MIRO-like,superfamily_P-loop_NTPase,smart_Small_GTPase_SAR1,smart_Small_GTPase_ARF,smart_Small_GTPase_Rab_type,prints_Small_GTPase_ARF/SAR,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	ARF1	HGNC	ENSG00000143761				154	0	0	100	24	19.3548
TBCE	0	genome.wustl.edu	37	1	235605063	235605064	+	RNA	INS	-	-	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	235605063	235605064	-	T	INS	TBCE	ENST00000465463	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.003:0.004	-	-	-	no_errors	TBCE	HGNC	ENSG00000116957				40	0	0	16	15	48.3871
HEATR1	0	genome.wustl.edu	37	1	236737472	236737472	+	RNA	DEL	A	A	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	236737472	236737472	A	-	DEL	HEATR1	ENST00000490339	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.012	-	-	-	no_errors	HEATR1	HGNC	ENSG00000119285				180	0	0	115	32	21.7687
RYR2	0	genome.wustl.edu	37	1	237969494	237969494	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	237969494	237969494	T	-	DEL	RYR2	ENST00000360064	human	ensembl	74_37	+1	known	frame_shift_del	c.14227	p.F4745fs	1.000	pfam_Ion_trans_dom	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ConA-like_lec_gl_sf,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_hand_dom,pfscan_MIR_motif	-	no_errors	RYR2	HGNC	ENSG00000198626				87	0	0	37	15	28.8462
TCEB3	0	genome.wustl.edu	37	1	24078404	24078404	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	24078404	24078404	A	-	DEL	TCEB3	ENST00000418390	human	ensembl	74_37	+1	known	frame_shift_del	c.1387	p.N465fs	0.998	NULL	pfam_RNA_pol_II_trans_fac_SIII_A,pfam_TFIIS_N,superfamily_TFIIS_N,smart_TFIIS/CRSP70_N_sub,pfscan_F-box_dom	-	no_errors	TCEB3	HGNC	ENSG00000011007				374	0	0	200	54	21.2598
MYOM3	0	genome.wustl.edu	37	1	24397622	24397624	+	In_Frame_Del	DEL	CTC	CTC	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	CTC	CTC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	24397622	24397624	CTC	-	DEL	MYOM3	ENST00000330966	human	ensembl	74_37	-1	known	in_frame_del	c.3138_3136	p.E1046in_frame_del	1.000:1.000:1.000	smart_Ig_sub	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	MYOM3	HGNC	ENSG00000142661				104	0	0	57	21	26.9231
KIF26B	0	genome.wustl.edu	37	1	245847605	245847605	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	245847605	245847605	C	-	DEL	KIF26B	ENST00000407071	human	ensembl	74_37	+1	known	frame_shift_del	c.2329	p.H777fs	1.000	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF26B	HGNC	ENSG00000162849				139	0	0	76	14	15.5556
MAN1C1	0	genome.wustl.edu	37	1	26104628	26104629	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	26104628	26104629	-	G	INS	MAN1C1	ENST00000374332	human	ensembl	74_37	+1	known	frame_shift_ins	c.1290_1291	p.L432fs	0.002:0.998	pfam_Glyco_hydro_47,superfamily_Glyco_hydro_47	pfam_Glyco_hydro_47,superfamily_Glyco_hydro_47,prints_Glyco_hydro_47	-	no_errors	MAN1C1	HGNC	ENSG00000117643				92	0	0	58	19	24.6753
ARID1A	0	genome.wustl.edu	37	1	27106804	27106804	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	27106804	27106804	C	-	DEL	ARID1A	ENST00000324856	human	ensembl	74_37	+1	known	frame_shift_del	c.6415	p.F2141fs	0.999	pfam_DUF3518,superfamily_ARM-type_fold	pfam_DUF3518,pfam_ARID/BRIGHT_DNA-bd,superfamily_ARID/BRIGHT_DNA-bd,superfamily_ARM-type_fold,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID1A	HGNC	ENSG00000117713				233	0	0	162	34	17.3469
EPB41	0	genome.wustl.edu	37	1	29379717	29379717	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	29379717	29379717	A	-	DEL	EPB41	ENST00000343067	human	ensembl	74_37	+1	known	frame_shift_del	c.1738	p.T582fs	0.796	pirsf_Band_41_protein	pirsf_Band_41_protein,pfam_Band_4.1_C,pfam_SAB_dom,pfam_FERM_PH-like_C,pfam_FERM_N,pfam_FERM_central,pfam_FERM-adjacent,superfamily_FERM_central,smart_Band_41_domain,prints_Band_41_fam,prints_Ez/rad/moesin_like,pfscan_FERM_domain	-	no_errors	EPB41	HGNC	ENSG00000159023				132	0	0	85	6	6.59341
SPOCD1	0	genome.wustl.edu	37	1	32256573	32256573	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	32256573	32256573	C	-	DEL	SPOCD1	ENST00000360482	human	ensembl	74_37	-1	known	frame_shift_del	c.3282	p.R1095fs	0.909	NULL	pfam_TFIIS_cen_dom,pfam_SPOC_C,superfamily_TFIIS_cen_dom,smart_TFS2M	-	no_errors	SPOCD1	HGNC	ENSG00000134668				52	0	0	47	6	11.3208
PTP4A2	0	genome.wustl.edu	37	1	32384717	32384718	+	RNA	DEL	AA	AA	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	32384717	32384718	AA	-	DEL	PTP4A2	ENST00000532289	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	PTP4A2	HGNC	ENSG00000184007				26	0	0	16	8	33.3333
MEGF6	0	genome.wustl.edu	37	1	3410404	3410404	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	3410404	3410404	C	-	DEL	MEGF6	ENST00000356575	human	ensembl	74_37	-1	known	frame_shift_del	c.4318	p.A1440fs	0.000	smart_EG-like_dom,smart_EGF_laminin	pfam_EGF_laminin,pfam_EGF-like_Ca-bd_dom,superfamily_Growth_fac_rcpt_N_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_EGF_laminin,pfscan_EG-like_dom,pfscan_EMI_domain	-	no_errors	MEGF6	HGNC	ENSG00000162591				27	0	0	8	7	46.6667
ZMYM6	0	genome.wustl.edu	37	1	35484912	35484912	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	35484912	35484912	A	-	DEL	ZMYM6	ENST00000317538	human	ensembl	74_37	-1	novel	frame_shift_del	c.470	p.L157fs	0.001	NULL	pfam_Znf_MYM,smart_TRASH_dom	-	no_errors	ZMYM6	HGNC	ENSG00000163867				178	0	0	79	44	35.7724
ZMYM4	0	genome.wustl.edu	37	1	35825030	35825031	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	35825030	35825031	-	T	INS	ZMYM4	ENST00000314607	human	ensembl	74_37	+1	known	frame_shift_ins	c.590_591	p.D200fs	1.000:1.000	NULL	pfam_DUF3504,pfam_Znf_MYM,smart_TRASH_dom	-	no_errors	ZMYM4	HGNC	ENSG00000146463				65	0	0	38	10	20.8333
KIAA0319L	0	genome.wustl.edu	37	1	35928292	35928292	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	35928292	35928292	G	-	DEL	KIAA0319L	ENST00000325722	human	ensembl	74_37	-1	known	frame_shift_del	c.1224	p.I409fs	0.992	pfam_PKD/REJ-like,superfamily_PKD_dom,smart_PKD/Chitinase_dom	pfam_PKD/REJ-like,superfamily_PKD_dom,smart_PKD/Chitinase_dom,pfscan_MANSC,pfscan_PKD_dom	-	no_errors	KIAA0319L	HGNC	ENSG00000142687				126	0	0	73	14	16.092
ENSG00000232335	0	genome.wustl.edu	37	1	36208989	36208989	+	RNA	DEL	A	A	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	36208989	36208989	A	-	DEL	ENSG00000232335	ENST00000373226	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	RP11-435D7.3	Clone_based_vega_gene	ENSG00000232335				145	0	0	59	22	27.1605
ENSG00000271554	0	genome.wustl.edu	37	1	36475027	36475028	+	RNA	DEL	AA	AA	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	36475027	36475028	AA	-	DEL	ENSG00000271554	ENST00000479395	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.011:0.004	-	-	-	no_errors	RP4-665N4.8	Clone_based_vega_gene	ENSG00000271554				103	0	0	35	22	38.5965
MFSD2A	0	genome.wustl.edu	37	1	40433608	40433610	+	RNA	DEL	CCT	CCT	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	CCT	CCT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	40433608	40433610	CCT	-	DEL	MFSD2A	ENST00000481612	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000:0.002:0.001	-	-	-	no_errors	MFSD2A	HGNC	ENSG00000168389				88	0	0	55	10	15.3846
ZMPSTE24	0	genome.wustl.edu	37	1	40756543	40756543	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	40756543	40756543	T	-	DEL	ZMPSTE24	ENST00000372759	human	ensembl	74_37	+1	known	frame_shift_del	c.1077	p.L362fs	1.000	pfam_Peptidase_M48	pfam_Peptidase_M48	-	no_errors	ZMPSTE24	HGNC	ENSG00000084073				147	1	0.675676	78	32	29.0909
LRRC41	0	genome.wustl.edu	37	1	46726877	46726877	+	RNA	DEL	T	T	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	46726877	46726877	T	-	DEL	LRRC41	ENST00000496156	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	LRRC41	HGNC	ENSG00000132128				63	0	0	26	20	43.4783
ENSG00000266993	0	genome.wustl.edu	37	1	52264099	52264099	+	RNA	DEL	A	A	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	52264099	52264099	A	-	DEL	ENSG00000266993	ENST00000586761	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RP4-657D16.3	Clone_based_vega_gene	ENSG00000266993				82	0	0	46	13	22.0339
TMEM59	0	genome.wustl.edu	37	1	54502396	54502396	+	RNA	DEL	A	A	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	54502396	54502396	A	-	DEL	TMEM59	ENST00000470395	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	TMEM59	HGNC	ENSG00000116209				14	0	0	11	6	35.2941
FAM151A	0	genome.wustl.edu	37	1	55081756	55081757	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	55081756	55081757	-	G	INS	FAM151A	ENST00000302250	human	ensembl	74_37	-1	known	frame_shift_ins	c.352_351	p.T117fs	0.716:0.037	pfam_DUF2181	pfam_DUF2181	-	no_errors	FAM151A	HGNC	ENSG00000162391				77	0	0	65	15	18.75
NPHP4	0	genome.wustl.edu	37	1	5927142	5927142	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	5927142	5927142	G	-	DEL	NPHP4	ENST00000378156	human	ensembl	74_37	-1	known	frame_shift_del	c.3506	p.P1169fs	0.202	NULL	NULL	-	no_errors	NPHP4	HGNC	ENSG00000131697				48	0	0	23	8	25.8065
RPL22	0	genome.wustl.edu	37	1	6257785	6257785	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	6257785	6257785	T	-	DEL	RPL22	ENST00000234875	human	ensembl	74_37	-1	known	frame_shift_del	c.44	p.K15fs	1.000	pfam_Ribosomal_L22e	pfam_Ribosomal_L22e	-	no_errors	RPL22	HGNC	ENSG00000116251				115	0	0	44	34	43.5897
SGIP1	0	genome.wustl.edu	37	1	67099769	67099769	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	67099769	67099769	A	-	DEL	SGIP1	ENST00000237247	human	ensembl	74_37	+1	known	frame_shift_del	c.106	p.K38fs	0.997	NULL	pfam_Muniscin_C-term_mu_dom,pfam_Clathrin_mu_C,superfamily_Clathrin_mu_C	-	no_errors	SGIP1	HGNC	ENSG00000118473				30	0	0	18	9	33.3333
WDR78	0	genome.wustl.edu	37	1	67390426	67390426	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	67390426	67390426	T	-	DEL	WDR78	ENST00000371026	human	ensembl	74_37	-1	known	frame_shift_del	c.89	p.K30fs	0.001	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR78	HGNC	ENSG00000152763				268	1	0.371747	152	36	19.1489
ZRANB2	0	genome.wustl.edu	37	1	71532487	71532487	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	71532487	71532487	T	-	DEL	ZRANB2	ENST00000370920	human	ensembl	74_37	-1	known	frame_shift_del	c.901	p.R301fs	1.000	pirsf_UCP037956_Znf_RanB2	pfam_Znf_RanBP2,smart_Znf_RanBP2,pirsf_UCP037956_Znf_RanB2,pfscan_Znf_RanBP2	-	no_errors	ZRANB2	HGNC	ENSG00000132485				196	0	0	103	25	19.5312
ASB17	0	genome.wustl.edu	37	1	76387916	76387916	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	76387916	76387916	T	-	DEL	ASB17	ENST00000284142	human	ensembl	74_37	-1	known	frame_shift_del	c.530	p.N177fs	0.996	superfamily_Ankyrin_rpt-contain_dom	pfam_SOCS_C,superfamily_Ankyrin_rpt-contain_dom,smart_SOCS_C,pfscan_SOCS_C	-	no_errors	ASB17	HGNC	ENSG00000154007				66	0	0	36	20	35.7143
ZNF644	0	genome.wustl.edu	37	1	91406040	91406040	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	91406040	91406040	T	-	DEL	ZNF644	ENST00000337393	human	ensembl	74_37	-1	known	frame_shift_del	c.871	p.R291fs	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF644	HGNC	ENSG00000122482				102	0	0	36	33	47.8261
MTF2	0	genome.wustl.edu	37	1	93602676	93602677	+	RNA	DEL	AA	AA	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	93602676	93602677	AA	-	DEL	MTF2	ENST00000467953	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000:0.997	-	-	-	no_errors	MTF2	HGNC	ENSG00000143033				29	0	0	11	5	31.25
CCDC18	0	genome.wustl.edu	37	1	93649684	93649684	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	1	93649684	93649684	A	-	DEL	CCDC18	ENST00000557479	human	ensembl	74_37	+1	known	frame_shift_del	c.638	p.K215fs	0.544	NULL	superfamily_Prefoldin,superfamily_tRNA-bd_arm	-	no_errors	CCDC18	HGNC	ENSG00000122483				85	0	0	53	19	26.3889
ENTPD7	0	genome.wustl.edu	37	10	101458541	101458541	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	10	101458541	101458541	T	-	DEL	ENTPD7	ENST00000370489	human	ensembl	74_37	+1	known	frame_shift_del	c.1261	p.Y423fs	1.000	pfam_GDA1_CD39_NTPase	pfam_GDA1_CD39_NTPase	-	no_errors	ENTPD7	HGNC	ENSG00000198018				78	0	0	38	14	26.9231
KCNIP2	0	genome.wustl.edu	37	10	103586910	103586910	+	RNA	DEL	C	C	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	10	103586910	103586910	C	-	DEL	KCNIP2	ENST00000355657	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.005	-	-	-	no_errors	KCNIP2	HGNC	ENSG00000120049				20	0	0	6	4	40
GBF1	0	genome.wustl.edu	37	10	104120909	104120909	+	RNA	DEL	A	A	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	10	104120909	104120909	A	-	DEL	GBF1	ENST00000476019	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	GBF1	HGNC	ENSG00000107862				83	0	0	51	12	19.0476
SMC3	0	genome.wustl.edu	37	10	112356187	112356188	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	10	112356187	112356188	-	G	INS	SMC3	ENST00000361804	human	ensembl	74_37	+1	known	frame_shift_ins	c.1995_1996	p.Y667fs	0.999:1.000	pfam_RecF/RecN/SMC_N,superfamily_P-loop_NTPase,superfamily_SMC_hinge	pfam_RecF/RecN/SMC_N,pfam_SMC_hinge,superfamily_P-loop_NTPase,superfamily_SMC_hinge,smart_SMC_hinge	-	no_errors	SMC3	HGNC	ENSG00000108055				311	0	0	191	56	22.6721
NHLRC2	0	genome.wustl.edu	37	10	115662308	115662308	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	10	115662308	115662308	A	-	DEL	NHLRC2	ENST00000369301	human	ensembl	74_37	+1	known	frame_shift_del	c.1450	p.R486fs	0.833	pfam_NHL_repeat,pfscan_NHL_repeat_subgr	pfam_NHL_repeat,superfamily_Thioredoxin-like_fold,pfscan_NHL_repeat_subgr	-	no_errors	NHLRC2	HGNC	ENSG00000196865				249	1	0.4	106	88	45.3608
PDZD8	0	genome.wustl.edu	37	10	119044331	119044331	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	10	119044331	119044331	T	-	DEL	PDZD8	ENST00000334464	human	ensembl	74_37	-1	known	frame_shift_del	c.1913	p.N638fs	0.000	NULL	pfam_PDZ,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_PDZ,smart_PDZ,smart_Prot_Kinase_C-like_PE/DAG-bd,pfscan_PDZ,pfscan_Prot_Kinase_C-like_PE/DAG-bd	-	no_errors	PDZD8	HGNC	ENSG00000165650				185	0	0	86	22	20.3704
INPP5F	0	genome.wustl.edu	37	10	121587063	121587065	+	In_Frame_Del	DEL	CTT	CTT	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	CTT	CTT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	10	121587063	121587065	CTT	-	DEL	INPP5F	ENST00000361976	human	ensembl	74_37	+1	known	in_frame_del	c.3170_3172	p.S1058in_frame_del	1.000:1.000:1.000	NULL	pfam_Syja_N,pfam_Inositol_phosphatase,pfscan_Syja_N	-	no_errors	INPP5F	HGNC	ENSG00000198825				241	0	0	135	55	28.9474
CHST15	0	genome.wustl.edu	37	10	125805647	125805647	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	10	125805647	125805647	G	-	DEL	CHST15	ENST00000346248	human	ensembl	74_37	-1	known	frame_shift_del	c.82	p.H28fs	0.004	NULL	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase	-	no_errors	CHST15	HGNC	ENSG00000182022				153	1	0.649351	76	25	24.7525
CDNF	0	genome.wustl.edu	37	10	14862076	14862077	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	10	14862076	14862077	-	C	INS	CDNF	ENST00000465530	human	ensembl	74_37	-1	known	frame_shift_ins	c.467_466	p.E156fs	1.000:1.000	pfam_Armet_prot	pfam_Armet_prot	-	no_errors	CDNF	HGNC	ENSG00000185267				380	0	0	188	61	24.498
DCLRE1C	0	genome.wustl.edu	37	10	14950433	14950433	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	10	14950433	14950433	T	-	DEL	DCLRE1C	ENST00000378278	human	ensembl	74_37	-1	known	frame_shift_del	c.2053	p.R685fs	0.022	NULL	pfam_DRMBL	-	no_errors	DCLRE1C	HGNC	ENSG00000152457				154	0	0	68	32	32
DNAJC1	0	genome.wustl.edu	37	10	22048437	22048437	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	10	22048437	22048437	C	-	DEL	DNAJC1	ENST00000376980	human	ensembl	74_37	-1	known	frame_shift_del	c.1258	p.V420fs	0.003	NULL	pfam_DnaJ_domain,pfam_SANT/Myb,superfamily_DnaJ_domain,superfamily_Homeodomain-like,smart_DnaJ_domain,smart_SANT/Myb,pfscan_Myb-like_dom,pfscan_DnaJ_domain,prints_DnaJ_domain	-	no_errors	DNAJC1	HGNC	ENSG00000136770				143	0	0	58	19	24.6753
GAD2	0	genome.wustl.edu	37	10	26581462	26581462	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	10	26581462	26581462	A	-	DEL	GAD2	ENST00000259271	human	ensembl	74_37	+1	known	frame_shift_del	c.1455	p.N487fs	1.000	pfam_PyrdxlP-dep_de-COase,superfamily_PyrdxlP-dep_Trfase	pfam_PyrdxlP-dep_de-COase,superfamily_PyrdxlP-dep_Trfase	-	no_errors	GAD2	HGNC	ENSG00000136750				255	0	0	152	42	21.6495
SVIL	0	genome.wustl.edu	37	10	29760116	29760116	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	10	29760116	29760116	C	-	DEL	SVIL	ENST00000355867	human	ensembl	74_37	-1	known	frame_shift_del	c.5586	p.M1863fs	0.474	NULL	pfam_Gelsolin_dom,pfam_Villin_headpiece,superfamily_Villin_headpiece,smart_Villin/Gelsolin,smart_Villin_headpiece,pfscan_Villin_headpiece,prints_Villin/Gelsolin	-	no_errors	SVIL	HGNC	ENSG00000197321				66	0	0	45	11	19.6429
KIAA1462	0	genome.wustl.edu	37	10	30317905	30317905	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	10	30317905	30317905	G	-	DEL	KIAA1462	ENST00000375377	human	ensembl	74_37	-1	known	frame_shift_del	c.1172	p.P391fs	0.000	NULL	NULL	-	no_errors	KIAA1462	HGNC	ENSG00000165757				225	0	0	171	10	5.52486
CREM	0	genome.wustl.edu	37	10	35456558	35456559	+	RNA	INS	-	-	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	10	35456558	35456559	-	T	INS	CREM	ENST00000497686	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	CREM	HGNC	ENSG00000095794				68	0	0	26	16	38.0952
ENSG00000234864	0	genome.wustl.edu	37	10	43199721	43199722	+	RNA	INS	-	-	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	10	43199721	43199722	-	T	INS	ENSG00000234864	ENST00000439913	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001:0.001	-	-	-	no_errors	AL022344.5	Clone_based_vega_gene	ENSG00000234864				42	0	0	26	4	13.3333
GPRIN2	0	genome.wustl.edu	37	10	46999604	46999604	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	10	46999604	46999604	A	-	DEL	GPRIN2	ENST00000374314	human	ensembl	74_37	+1	known	frame_shift_del	c.724	p.R242fs	0.049	NULL	NULL	-	no_errors	GPRIN2	HGNC	ENSG00000204175				133	0	0	97	12	11.0092
GDF2	0	genome.wustl.edu	37	10	48414131	48414131	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	10	48414131	48414131	G	-	DEL	GDF2	ENST00000249598	human	ensembl	74_37	-1	known	frame_shift_del	c.737	p.P246fs	0.839	pfam_TGF-b_N	pfam_TGF-b_C,pfam_TGF-b_N,smart_TGF-b_C,prints_Inhibin_asu	-	no_errors	GDF2	HGNC	ENSG00000128802				143	0	0	74	32	30.1887
DNA2	0	genome.wustl.edu	37	10	70192211	70192211	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	10	70192211	70192211	T	-	DEL	DNA2	ENST00000399180	human	ensembl	74_37	-1	known	frame_shift_del	c.1961	p.N654fs	0.971	NULL	pfam_DNA_replication_fac_Dna2_N,superfamily_P-loop_NTPase	-	no_errors	DNA2	HGNC	ENSG00000138346				26	0	0	15	7	31.8182
TET1	0	genome.wustl.edu	37	10	70332153	70332153	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	10	70332153	70332153	A	-	DEL	TET1	ENST00000373644	human	ensembl	74_37	+1	known	frame_shift_del	c.58	p.K22fs	0.855	NULL	pfam_Znf_CXXC,pfscan_Znf_CXXC	-	no_errors	TET1	HGNC	ENSG00000138336				87	0	0	29	13	30.9524
VPS26A	0	genome.wustl.edu	37	10	70930940	70930940	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	10	70930940	70930940	A	-	DEL	VPS26A	ENST00000263559	human	ensembl	74_37	+1	known	frame_shift_del	c.899	p.K301fs	1.000	NULL	pfam_VPS26	-	no_errors	VPS26A	HGNC	ENSG00000122958				162	0	0	69	27	28.125
ZSWIM8	0	genome.wustl.edu	37	10	75560464	75560464	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	10	75560464	75560464	C	-	DEL	ZSWIM8	ENST00000398706	human	ensembl	74_37	+1	known	frame_shift_del	c.5093	p.Y1701fs	1.000	NULL	pfscan_Znf_SWIM	-	no_errors	ZSWIM8	HGNC	ENSG00000214655				184	0	0	137	16	10.4575
LRIT1	0	genome.wustl.edu	37	10	86001144	86001144	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	10	86001144	86001144	G	-	DEL	LRIT1	ENST00000372105	human	ensembl	74_37	-1	known	frame_shift_del	c.52	p.Q18fs	0.600	NULL	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Leu-rich_rpt,superfamily_Fibronectin_type3,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	LRIT1	HGNC	ENSG00000148602				48	0	0	40	7	14.8936
STAMBPL1	0	genome.wustl.edu	37	10	90682146	90682146	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	10	90682146	90682146	A	-	DEL	STAMBPL1	ENST00000371927	human	ensembl	74_37	+1	known	frame_shift_del	c.1207	p.K405fs	1.000	NULL	pfam_JAB_MPN_dom,smart_JAB_MPN_dom	-	no_errors	STAMBPL1	HGNC	ENSG00000138134				132	0	0	83	35	29.661
BTAF1	0	genome.wustl.edu	37	10	93748921	93748921	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	10	93748921	93748921	T	-	DEL	BTAF1	ENST00000265990	human	ensembl	74_37	+1	known	frame_shift_del	c.2438	p.F814fs	1.000	pfam_DUF3535,superfamily_ARM-type_fold	pfam_DUF3535,pfam_SNF2_N,pfam_HEAT,pfam_Helicase_C,superfamily_ARM-type_fold,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	BTAF1	HGNC	ENSG00000095564				75	0	0	33	9	21.4286
ENSG00000228553	0	genome.wustl.edu	37	10	95986973	95986974	+	RNA	INS	-	-	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	10	95986973	95986974	-	T	INS	ENSG00000228553	ENST00000447227	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.010:0.012	-	-	-	no_errors	RP11-391J2.3	Clone_based_vega_gene	ENSG00000228553				35	0	0	11	6	35.2941
NOC3L	0	genome.wustl.edu	37	10	96117098	96117098	+	RNA	DEL	A	A	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	10	96117098	96117098	A	-	DEL	NOC3L	ENST00000463649	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	NOC3L	HGNC	ENSG00000173145				49	0	0	48	17	26.1538
TRPC6	0	genome.wustl.edu	37	11	101362287	101362287	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	101362287	101362287	T	-	DEL	TRPC6	ENST00000344327	human	ensembl	74_37	-1	known	frame_shift_del	c.1128	p.K376fs	1.000	tigrfam_TRP_channel	pfam_Ion_trans_dom,pfam_TRP_dom,pfam_PKD1_2_channel,superfamily_Ankyrin_rpt-contain_dom,superfamily_ARM-type_fold,smart_Ankyrin_rpt,prints_TRPC6_channel,prints_TRPC_channel,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,tigrfam_TRP_channel	-	no_errors	TRPC6	HGNC	ENSG00000137672				359	0	0	269	15	5.28169
MUC6	0	genome.wustl.edu	37	11	1015927	1015927	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	1015927	1015927	C	-	DEL	MUC6	ENST00000421673	human	ensembl	74_37	-1	known	frame_shift_del	c.6874	p.V2292fs	0.001	NULL	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_Cys_knot_C,pfscan_Cys_knot_C	-	no_errors	MUC6	HGNC	ENSG00000184956				182	0	0	115	45	28.125
CUL5	0	genome.wustl.edu	37	11	107965658	107965658	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	107965658	107965658	A	-	DEL	CUL5	ENST00000393094	human	ensembl	74_37	+1	known	frame_shift_del	c.1687	p.N565fs	1.000	pfam_Cullin_N,superfamily_Cullin_homology,smart_Cullin_homology,pfscan_Cullin_homology	pfam_Cullin_N,pfam_Cullin_neddylation_domain,superfamily_Cullin_repeat-like_dom,superfamily_Cullin_homology,smart_Cullin_homology,smart_Cullin_neddylation_domain,pfscan_Cullin_homology	-	no_errors	CUL5	HGNC	ENSG00000166266				100	0	0	63	21	25
DDX10	0	genome.wustl.edu	37	11	108544239	108544239	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	108544239	108544239	A	-	DEL	DDX10	ENST00000322536	human	ensembl	74_37	+1	known	frame_shift_del	c.232	p.T80fs	0.988	pfscan_RNA_helicase_DEAD_Q_motif	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX10	HGNC	ENSG00000178105				101	0	0	46	16	25.8065
DLAT	0	genome.wustl.edu	37	11	111896977	111896977	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	111896977	111896977	A	-	DEL	DLAT	ENST00000280346	human	ensembl	74_37	+1	known	frame_shift_del	c.335	p.E115fs	1.000	pfam_Biotin_lipoyl,superfamily_Single_hybrid_motif,pfscan_Biotin_lipoyl	pfam_2-oxoacid_DH_actylTfrase,pfam_Biotin_lipoyl,pfam_E3-bd,superfamily_Single_hybrid_motif,superfamily_E3-bd,pfscan_Biotin_lipoyl,tigrfam_LAT1	-	no_errors	DLAT	HGNC	ENSG00000150768				49	0	0	16	4	20
CADM1	0	genome.wustl.edu	37	11	115047097	115047097	+	RNA	DEL	A	A	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	115047097	115047097	A	-	DEL	CADM1	ENST00000543375	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.997	-	-	-	no_errors	CADM1	HGNC	ENSG00000182985				153	0	0	72	40	35.7143
AMICA1	0	genome.wustl.edu	37	11	118065068	118065068	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	118065068	118065068	C	-	DEL	AMICA1	ENST00000356289	human	ensembl	74_37	-1	known	frame_shift_del	c.1157	p.G386fs	0.000	NULL	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like_dom	-	no_errors	AMICA1	HGNC	ENSG00000160593				145	0	0	86	23	21.1009
PDZD3	0	genome.wustl.edu	37	11	119058341	119058341	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	119058341	119058341	G	-	DEL	PDZD3	ENST00000392817	human	ensembl	74_37	+1	known	frame_shift_del	c.787	p.A264fs	0.982	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	PDZD3	HGNC	ENSG00000172367				12	0	0	7	2	22.2222
MFRP	0	genome.wustl.edu	37	11	119216273	119216273	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	119216273	119216273	G	-	DEL	MFRP	ENST00000449574	human	ensembl	74_37	-1	known	frame_shift_del	c.498	p.N167fs	1.000	pfam_CUB_dom,superfamily_CUB_dom,smart_CUB_dom,pfscan_CUB_dom	pfam_CUB_dom,pfam_Frizzled_dom,pfam_LDrepeatLR_classA_rpt,superfamily_CUB_dom,superfamily_Frizzled_dom,superfamily_LDrepeatLR_classA_rpt,smart_CUB_dom,smart_LDrepeatLR_classA_rpt,smart_Frizzled_dom,pfscan_CUB_dom,pfscan_Frizzled_dom,pfscan_LDrepeatLR_classA_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	MFRP	HGNC	ENSG00000235718				122	0	0	66	16	19.5122
SORL1	0	genome.wustl.edu	37	11	121475905	121475905	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	121475905	121475905	A	-	DEL	SORL1	ENST00000260197	human	ensembl	74_37	+1	known	frame_shift_del	c.4735	p.M1581fs	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_LDrepeatLR_classA_rpt,pfam_Fibronectin_type3,pfam_LDLR_classB_rpt,superfamily_Fibronectin_type3,superfamily_LDrepeatLR_classA_rpt,smart_VPS10,smart_LDLR_classB_rpt,smart_LDrepeatLR_classA_rpt,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	SORL1	HGNC	ENSG00000137642				351	1	0.284091	200	60	23.0769
OR8D4	0	genome.wustl.edu	37	11	123777442	123777442	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	123777442	123777442	T	-	DEL	OR8D4	ENST00000321355	human	ensembl	74_37	+1	known	frame_shift_del	c.304	p.F104fs	0.939	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR8D4	HGNC	ENSG00000181518				606	0	0	344	104	23.2143
OR8B2	0	genome.wustl.edu	37	11	124253238	124253239	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	124253238	124253239	-	T	INS	OR8B2	ENST00000375013	human	ensembl	74_37	-1	known	frame_shift_ins	c.2_1	p.M1fs	0.673:0.574	NULL	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR8B2	HGNC	ENSG00000204293				196	0	0	122	8	6.15385
OR8B3	0	genome.wustl.edu	37	11	124267246	124267247	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	124267246	124267247	-	T	INS	OR8B3	ENST00000354597	human	ensembl	74_37	-1	known	frame_shift_ins	c.2_1	p.M1fs	0.023:0.010	NULL	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR8B3	HGNC	ENSG00000196661				98	0	0	67	5	6.94444
SRPR	0	genome.wustl.edu	37	11	126137087	126137087	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	126137087	126137087	T	-	DEL	SRPR	ENST00000332118	human	ensembl	74_37	-1	known	frame_shift_del	c.509	p.K170fs	0.991	pfam_Sig_recog_particle_rcpt_asu_N	pfam_Sig_recog_particle_rcpt_asu_N,pfam_SRP54_GTPase_dom,pfam_ArgK,pfam_CobQ/CobB/MinD/ParA_Nub-bd_dom,pfam_Signal_recog_particl_SRP54_hlx,superfamily_Longin-like_dom,superfamily_P-loop_NTPase,superfamily_Signal_recog_particl_SRP54_hlx,smart_Signal_recog_particl_SRP54_hlx,smart_AAA+_ATPase,smart_SRP54_GTPase_dom	-	no_errors	SRPR	HGNC	ENSG00000182934				612	2	0.325733	419	111	20.9434
IGSF9B	0	genome.wustl.edu	37	11	133790374	133790374	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	133790374	133790374	G	-	DEL	IGSF9B	ENST00000321016	human	ensembl	74_37	-1	known	frame_shift_del	c.3246	p.T1083fs	0.022	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	IGSF9B	HGNC	ENSG00000080854				90	0	0	49	8	14.0351
PIK3C2A	0	genome.wustl.edu	37	11	17112906	17112907	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	17112906	17112907	-	T	INS	PIK3C2A	ENST00000265970	human	ensembl	74_37	-1	known	frame_shift_ins	c.4853_4852	p.T1618fs	1.000:1.000	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	pfam_PI3/4_kinase_cat_dom,pfam_PInositide-3_kin_accessory_dom,pfam_PI3K_C2_dom,pfam_PI3K_Ras-bd_dom,pfam_Phox,pfam_C2_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_dom,superfamily_Phox,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,smart_Phox,pfscan_C2_dom,pfscan_Phox,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3C2A	HGNC	ENSG00000011405				155	0	0	115	41	26.2821
MRGPRX1	0	genome.wustl.edu	37	11	18955770	18955771	+	Frame_Shift_Del	DEL	AT	AT	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	AT	AT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	18955770	18955771	AT	-	DEL	MRGPRX1	ENST00000302797	human	ensembl	74_37	-1	known	frame_shift_del	c.562_561	p.V189fs	0.804:0.323	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	-	no_errors	MRGPRX1	HGNC	ENSG00000170255				183	0	0	110	27	19.708
CCDC73	0	genome.wustl.edu	37	11	32637520	32637520	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	32637520	32637520	T	-	DEL	CCDC73	ENST00000335185	human	ensembl	74_37	-1	known	frame_shift_del	c.1341	p.E448fs	0.000	NULL	NULL	-	no_errors	CCDC73	HGNC	ENSG00000186714				16	0	0	12	10	45.4545
B4GALNT4	0	genome.wustl.edu	37	11	380921	380921	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	380921	380921	G	-	DEL	B4GALNT4	ENST00000329962	human	ensembl	74_37	+1	known	frame_shift_del	c.2966	p.G991fs	1.000	pfam_Chond_GalNAc	pfam_Chond_GalNAc,pfam_PA14,smart_PA14	-	no_errors	B4GALNT4	HGNC	ENSG00000182272				53	0	0	24	9	27.2727
HNRNPKP3	0	genome.wustl.edu	37	11	43283606	43283608	+	RNA	DEL	AAA	AAA	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	AAA	AAA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	43283606	43283608	AAA	-	DEL	HNRNPKP3	ENST00000511537	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.986:0.995:0.998	-	-	-	no_errors	HNRNPKP3	HGNC	ENSG00000251557				21	0	0	8	4	33.3333
DGKZ	0	genome.wustl.edu	37	11	46393274	46393275	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	46393274	46393275	-	C	INS	DGKZ	ENST00000454345	human	ensembl	74_37	+1	known	frame_shift_ins	c.1344_1345	p.K448fs	1.000:1.000	NULL	pfam_Diacylglycerol_kin_accessory,pfam_Diacylglycerol_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_Ankyrin_rpt-contain_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Diacylglycerol_kinase_cat_dom,smart_Diacylglycerol_kin_accessory,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	DGKZ	HGNC	ENSG00000149091				47	0	0	29	3	9.375
OR51E2	0	genome.wustl.edu	37	11	4703475	4703475	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	4703475	4703475	A	-	DEL	OR51E2	ENST00000396950	human	ensembl	74_37	-1	known	frame_shift_del	c.467	p.F156fs	0.027	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR51E2	HGNC	ENSG00000167332				139	0	0	86	10	10.4167
SPI1	0	genome.wustl.edu	37	11	47399860	47399861	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	47399860	47399861	-	G	INS	SPI1	ENST00000227163	human	ensembl	74_37	-1	known	frame_shift_ins	c.45_44	p.Q16fs	1.000:1.000	NULL	pfam_Ets_dom,smart_Ets_dom,pfscan_Ets_dom,prints_Ets_dom	-	no_errors	SPI1	HGNC	ENSG00000066336				39	0	0	26	5	16.129
NUP160	0	genome.wustl.edu	37	11	47826036	47826036	+	RNA	DEL	A	A	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	47826036	47826036	A	-	DEL	NUP160	ENST00000527750	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.001	-	-	-	no_errors	NUP160	HGNC	ENSG00000030066				78	0	0	32	20	38.4615
OR4A16	0	genome.wustl.edu	37	11	55110761	55110761	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	55110761	55110761	T	-	DEL	OR4A16	ENST00000314721	human	ensembl	74_37	+1	known	frame_shift_del	c.85	p.L30fs	0.013	prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4A16	HGNC	ENSG00000181961				177	0	0	77	30	28.0374
UBQLN3	0	genome.wustl.edu	37	11	5529729	5529729	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	5529729	5529729	G	-	DEL	UBQLN3	ENST00000311659	human	ensembl	74_37	-1	known	frame_shift_del	c.1060	p.Q354fs	0.004	NULL	pfam_Ubiquitin_dom,pfam_Rad60/SUMO_like,pfam_UBA/Ts_N,superfamily_UBA-like,superfamily_ARM-type_fold,smart_Ubiquitin_dom,smart_STI1_HS-bd,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Ubiquitin_supergroup	-	no_errors	UBQLN3	HGNC	ENSG00000175520				249	0	0	125	34	21.3836
TRIM51	0	genome.wustl.edu	37	11	55653610	55653610	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	55653610	55653610	A	-	DEL	TRIM51	ENST00000449290	human	ensembl	74_37	+1	known	frame_shift_del	c.423	p.M144fs	0.001	NULL	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl_sf,smart_Znf_RING,smart_Znf_B-box,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	TRIM51	HGNC	ENSG00000124900				86	0	0	42	9	17.6471
TNKS1BP1	0	genome.wustl.edu	37	11	57077906	57077906	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	57077906	57077906	C	-	DEL	TNKS1BP1	ENST00000358252	human	ensembl	74_37	-1	known	frame_shift_del	c.2279	p.G760fs	0.462	NULL	NULL	-	no_errors	TNKS1BP1	HGNC	ENSG00000149115				146	0	0	75	27	26.4706
PRG3	0	genome.wustl.edu	37	11	57147266	57147266	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	57147266	57147266	G	-	DEL	PRG3	ENST00000287143	human	ensembl	74_37	-1	known	frame_shift_del	c.76	p.H26fs	0.000	prints_Eosinophil_major_basic	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin,prints_Eosinophil_major_basic	-	no_errors	PRG3	HGNC	ENSG00000156575				154	0	0	97	19	16.3793
RTN4RL2	0	genome.wustl.edu	37	11	57244233	57244233	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	57244233	57244233	G	-	DEL	RTN4RL2	ENST00000335099	human	ensembl	74_37	+1	known	frame_shift_del	c.1112	p.G373fs	1.000	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	RTN4RL2	HGNC	ENSG00000186907				33	0	0	11	5	31.25
ZP1	0	genome.wustl.edu	37	11	60637322	60637322	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	60637322	60637322	C	-	DEL	ZP1	ENST00000278853	human	ensembl	74_37	+1	known	frame_shift_del	c.631	p.H212fs	0.000	NULL	pfam_ZP_dom,superfamily_P_trefoil,smart_P_trefoil,smart_ZP_dom,pfscan_ZP_dom,prints_ZP_dom	-	no_errors	ZP1	HGNC	ENSG00000149506				98	0	0	63	18	22.2222
TMEM132A	0	genome.wustl.edu	37	11	60699534	60699534	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	60699534	60699534	G	-	DEL	TMEM132A	ENST00000005286	human	ensembl	74_37	+1	known	frame_shift_del	c.1294	p.A434fs	0.988	NULL	NULL	-	no_errors	TMEM132A	HGNC	ENSG00000006118				152	0	0	87	22	20.1835
PHRF1	0	genome.wustl.edu	37	11	607110	607112	+	In_Frame_Del	DEL	GAA	GAA	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	GAA	GAA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	607110	607112	GAA	-	DEL	PHRF1	ENST00000264555	human	ensembl	74_37	+1	known	in_frame_del	c.1654_1656	p.E553in_frame_del	0.002:0.001:0.000	NULL	pfam_Znf_PHD-finger,pfam_Znf_C3HC4_RING-type,superfamily_Znf_FYVE_PHD,smart_Znf_RING,smart_Znf_PHD,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	PHRF1	HGNC	ENSG00000070047				65	0	0	49	10	16.9492
MYRF	0	genome.wustl.edu	37	11	61539013	61539013	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	61539013	61539013	C	-	DEL	MYRF	ENST00000278836	human	ensembl	74_37	+1	known	frame_shift_del	c.782	p.S264fs	1.000	NULL	pfam_NDT80_DNA-bd_dom,superfamily_p53-like_TF_DNA-bd	-	no_errors	MYRF	HGNC	ENSG00000124920				304	0	0	200	63	23.9544
SLC22A6	0	genome.wustl.edu	37	11	62749334	62749334	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	62749334	62749334	A	-	DEL	SLC22A6	ENST00000377871	human	ensembl	74_37	-1	known	frame_shift_del	c.777	p.F259fs	0.986	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Orgcat_transp	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Orgcat_transp	-	no_errors	SLC22A6	HGNC	ENSG00000197901				36	0	0	24	4	14.2857
CCDC88B	0	genome.wustl.edu	37	11	64121543	64121543	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	64121543	64121543	G	-	DEL	CCDC88B	ENST00000356786	human	ensembl	74_37	+1	known	frame_shift_del	c.4000	p.L1336fs	0.867	NULL	pfam_Hook-related_fam	-	no_errors	CCDC88B	HGNC	ENSG00000168071				24	0	0	12	2	14.2857
MAP4K2	0	genome.wustl.edu	37	11	64569202	64569203	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	64569202	64569203	-	C	INS	MAP4K2	ENST00000294066	human	ensembl	74_37	-1	known	frame_shift_ins	c.394_393	p.K131fs	1.000:0.978	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Citron,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Citron,pfscan_Prot_kinase_dom	-	no_errors	MAP4K2	HGNC	ENSG00000168067				225	0	0	137	35	20.3488
CDCA5	0	genome.wustl.edu	37	11	64851183	64851183	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	64851183	64851183	G	-	DEL	CDCA5	ENST00000275517	human	ensembl	74_37	-1	known	frame_shift_del	c.59	p.P20fs	0.002	pfam_Sororin	pfam_Sororin	-	no_errors	CDCA5	HGNC	ENSG00000146670				77	0	0	41	12	22.6415
VPS51	0	genome.wustl.edu	37	11	64876853	64876853	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	64876853	64876853	G	-	DEL	VPS51	ENST00000279281	human	ensembl	74_37	+1	known	frame_shift_del	c.1545	p.G517fs	1.000	NULL	pfam_COG8,pfam_Vacuolar_sorting-assoc_54,pfam_COG_su2_N,pfam_RZZ-complex_Zw10,superfamily_Cullin_repeat-like_dom	-	no_errors	VPS51	HGNC	ENSG00000149823				106	1	0.934579	54	16	22.8571
MALAT1	0	genome.wustl.edu	37	11	65267659	65267659	+	RNA	DEL	A	A	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	65267659	65267659	A	-	DEL	MALAT1	ENST00000534336	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	MALAT1	HGNC	ENSG00000251562				24	0	0	13	5	27.7778
PCNXL3	0	genome.wustl.edu	37	11	65386239	65386239	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	65386239	65386239	G	-	DEL	PCNXL3	ENST00000355703	human	ensembl	74_37	+1	known	frame_shift_del	c.1406	p.A470fs	1.000	NULL	pfam_Pecanex	-	no_errors	PCNXL3	HGNC	ENSG00000197136				43	0	0	27	4	12.9032
YIF1A	0	genome.wustl.edu	37	11	66052323	66052323	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	66052323	66052323	G	-	DEL	YIF1A	ENST00000471387	human	ensembl	74_37	-1	putative	frame_shift_del	c.327	p.I110fs	0.002	NULL	pfam_Hrf1	-	no_errors	YIF1A	HGNC	ENSG00000174851				94	0	0	57	22	27.8481
YIF1A	0	genome.wustl.edu	37	11	66055105	66055105	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	66055105	66055105	G	-	DEL	YIF1A	ENST00000376901	human	ensembl	74_37	-1	known	frame_shift_del	c.391	p.R131fs	0.484	pfam_Hrf1,pfam_Yip1	pfam_Hrf1,pfam_Yip1	-	no_errors	YIF1A	HGNC	ENSG00000174851				74	0	0	37	11	22.9167
DCHS1	0	genome.wustl.edu	37	11	6662142	6662142	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	6662142	6662142	G	-	DEL	DCHS1	ENST00000299441	human	ensembl	74_37	-1	known	frame_shift_del	c.703	p.R235fs	0.606	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	DCHS1	HGNC	ENSG00000166341				354	0	0	216	38	14.9606
ENSG00000225805	0	genome.wustl.edu	37	11	71589510	71589511	+	RNA	INS	-	-	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	71589510	71589511	-	T	INS	ENSG00000225805	ENST00000530210	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.024:0.018	-	-	-	no_errors	CTD-2313N18.7	Clone_based_vega_gene	ENSG00000225805				258	0	0	98	41	29.4964
MYO7A	0	genome.wustl.edu	37	11	76867058	76867058	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	76867058	76867058	C	-	DEL	MYO7A	ENST00000409709	human	ensembl	74_37	+1	known	frame_shift_del	c.391	p.H133fs	1.000	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_MyTH4_dom,pfam_FERM_central,pfam_FERM_N,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,superfamily_FERM_central,superfamily_SH3_domain,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_MyTH4_dom,smart_Band_41_domain,smart_SH3_domain,pfscan_FERM_domain,pfscan_IQ_motif_EF-hand-BS,pfscan_MyTH4_dom,pfscan_SH3_domain,prints_Myosin_head_motor_dom	-	no_errors	MYO7A	HGNC	ENSG00000137474				62	0	0	27	6	18.1818
AAMDC	0	genome.wustl.edu	37	11	77553633	77553633	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	77553633	77553633	G	-	DEL	AAMDC	ENST00000393427	human	ensembl	74_37	+1	known	frame_shift_del	c.91	p.G32fs	1.000	pfam_NADH_Ub_cplx-1_asu_assmbl-fac3,superfamily_NADH_Ub_cplx-1_asu_assmbl-fac3	pfam_NADH_Ub_cplx-1_asu_assmbl-fac3,superfamily_NADH_Ub_cplx-1_asu_assmbl-fac3	-	no_errors	AAMDC	HGNC	ENSG00000087884				105	0	0	77	18	18.9474
ENSG00000254420	0	genome.wustl.edu	37	11	78154811	78154812	+	RNA	DEL	AA	AA	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	78154811	78154812	AA	-	DEL	ENSG00000254420	ENST00000534168	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000:0.006	-	-	-	no_errors	RP11-452H21.1	Clone_based_vega_gene	ENSG00000254420				57	0	0	26	6	18.75
TENM4	0	genome.wustl.edu	37	11	78413021	78413022	+	Frame_Shift_Ins	INS	-	-	CA			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	78413021	78413022	-	CA	INS	TENM4	ENST00000278550	human	ensembl	74_37	-1	known	frame_shift_ins	c.4637_4636	p.A1546fs	1.000:1.000	NULL	pfam_Ten_N,pfam_EGF_extracell,pfam_YD,superfamily_CarboxyPept-like_regulatory,smart_EG-like_dom,pfscan_EG-like_dom,tigrfam_YD,tigrfam_Rhs_assc_core	-	no_errors	TENM4	HGNC	ENSG00000149256				104	0	0	69	14	16.8675
ME3	0	genome.wustl.edu	37	11	86157515	86157515	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	86157515	86157515	A	-	DEL	ME3	ENST00000359636	human	ensembl	74_37	-1	known	frame_shift_del	c.1395	p.F465fs	1.000	pfam_Malic_NAD-bd,smart_Malic_NAD-bd	pfam_Malic_NAD-bd,pfam_Malic_N,smart_Malic_NAD-bd,prints_Malic_OxRdtase	-	no_errors	ME3	HGNC	ENSG00000151376				73	0	0	47	23	32.8571
MIR548L	0	genome.wustl.edu	37	11	94199691	94199691	+	RNA	DEL	T	T	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	11	94199691	94199691	T	-	DEL	MIR548L	ENST00000408303	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.046	-	-	-	no_errors	MIR548L	HGNC	ENSG00000221230				115	0	0	68	34	33.3333
KLRAP1	0	genome.wustl.edu	37	12	10748370	10748370	+	RNA	DEL	T	T	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	12	10748370	10748370	T	-	DEL	KLRAP1	ENST00000535939	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	KLRAP1	HGNC	ENSG00000256667				87	0	0	47	23	32.8571
ACACB	0	genome.wustl.edu	37	12	109604775	109604775	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	12	109604775	109604775	G	-	DEL	ACACB	ENST00000338432	human	ensembl	74_37	+1	known	frame_shift_del	c.763	p.D257fs	1.000	superfamily_PreATP-grasp_dom	pfam_AcCoA_COase_cen,pfam_Carboxyl_trans,pfam_CbamoylP_synth_lsu-like_ATP-bd,pfam_CarbamoylP_synth_lsu_N,pfam_Biotin_COase_C,pfam_Biotin_lipoyl,superfamily_PreATP-grasp_dom,superfamily_Rudment_hybrid_motif,superfamily_Single_hybrid_motif,smart_Biotin_COase_C,pfscan_ATP-grasp,pfscan_Biotin_carboxylation_dom,pfscan_COA_CT_N,pfscan_COA_CT_C,pfscan_Biotin_lipoyl	-	no_errors	ACACB	HGNC	ENSG00000076555				131	0	0	91	22	19.469
ALDH2	0	genome.wustl.edu	37	12	112229927	112229927	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	12	112229927	112229927	G	-	DEL	ALDH2	ENST00000261733	human	ensembl	74_37	+1	known	frame_shift_del	c.858	p.K289fs	0.991	pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH	pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH	-	no_errors	ALDH2	HGNC	ENSG00000111275				166	0	0	96	17	15.0442
HECTD4	0	genome.wustl.edu	37	12	112600859	112600860	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	12	112600859	112600860	-	G	INS	HECTD4	ENST00000377560	human	ensembl	74_37	-1	known	frame_shift_ins	c.12591_12590	p.D4198fs	0.555:1.000	pfam_HECT,superfamily_HECT,smart_HECT,pfscan_HECT	pfam_HECT,superfamily_HECT,superfamily_ConA-like_lec_gl_sf,smart_HECT,pfscan_HECT	-	no_errors	HECTD4	HGNC	ENSG00000173064				245	0	0	142	31	17.9191
FBXO21	0	genome.wustl.edu	37	12	117615412	117615412	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	12	117615412	117615412	T	-	DEL	FBXO21	ENST00000330622	human	ensembl	74_37	-1	known	frame_shift_del	c.505	p.I169fs	1.000	superfamily_F-box_dom	pfam_Hemimethylated_DNA-bd_dom,superfamily_Hemimethylated_DNA-bd_dom,superfamily_F-box_dom,tigrfam_Hemimethylated_DNA-bd_dom	-	no_errors	FBXO21	HGNC	ENSG00000135108				137	0	0	99	7	6.60377
CCDC60	0	genome.wustl.edu	37	12	119942961	119942961	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	12	119942961	119942961	G	-	DEL	CCDC60	ENST00000327554	human	ensembl	74_37	+1	known	frame_shift_del	c.736	p.S248fs	0.730	NULL	NULL	-	no_errors	CCDC60	HGNC	ENSG00000183273				387	0	0	241	64	20.9836
KDM2B	0	genome.wustl.edu	37	12	122018773	122018773	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	12	122018773	122018773	G	-	DEL	KDM2B	ENST00000377071	human	ensembl	74_37	-1	known	frame_shift_del	c.44	p.P15fs	0.013	NULL	pfam_Znf_CXXC,pfam_F-box_dom,pfam_JmjC_dom,superfamily_Znf_FYVE_PHD,smart_JmjC_dom,smart_Znf_PHD,smart_Leu-rich_rpt_Cys-con_subtyp,pfscan_JmjC_dom,pfscan_Znf_PHD-finger,pfscan_Znf_CXXC	-	no_errors	KDM2B	HGNC	ENSG00000089094				405	0	0	240	52	17.8082
CLIP1	0	genome.wustl.edu	37	12	122812630	122812631	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	12	122812630	122812631	-	T	INS	CLIP1	ENST00000540338	human	ensembl	74_37	-1	known	frame_shift_ins	c.3113_3112	p.T1038fs	0.000:0.000	NULL	pfam_CAP-Gly_domain,superfamily_CAP-Gly_domain,superfamily_Znf_CCHC,superfamily_Prefoldin,pfscan_CAP-Gly_domain	-	no_errors	CLIP1	HGNC	ENSG00000130779				307	0	0	156	78	33.3333
RSRC2	0	genome.wustl.edu	37	12	123006781	123006781	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	12	123006781	123006781	T	-	DEL	RSRC2	ENST00000331738	human	ensembl	74_37	-1	known	frame_shift_del	c.72	p.E25fs	1.000	NULL	NULL	-	no_errors	RSRC2	HGNC	ENSG00000111011				96	0	0	88	10	10.2041
VPS37B	0	genome.wustl.edu	37	12	123351892	123351892	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	12	123351892	123351892	G	-	DEL	VPS37B	ENST00000267202	human	ensembl	74_37	-1	known	frame_shift_del	c.629	p.P210fs	0.609	NULL	pfam_Mod_r	-	no_errors	VPS37B	HGNC	ENSG00000139722				38	0	0	18	9	33.3333
RPL22P19	0	genome.wustl.edu	37	12	125420367	125420367	+	RNA	DEL	T	T	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	12	125420367	125420367	T	-	DEL	RPL22P19	ENST00000480427	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	RPL22P19	HGNC	ENSG00000241129				15	0	0	6	5	45.4545
EP400	0	genome.wustl.edu	37	12	132491394	132491394	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	12	132491394	132491394	T	-	DEL	EP400	ENST00000333577	human	ensembl	74_37	+1	known	frame_shift_del	c.3384	p.F1130fs	0.686	pfam_SNF2_N,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_SNF2_N,pfam_Helicase/SANT-assoc_DNA-bd,pfam_Helicase_C,superfamily_P-loop_NTPase,superfamily_Homeodomain-like,smart_HAS_subgr,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Myb-like_dom,pfscan_Helicase/SANT-assoc_DNA-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	EP400	HGNC	ENSG00000183495				159	0	0	85	33	27.9661
POLE	0	genome.wustl.edu	37	12	133219487	133219487	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	12	133219487	133219487	G	-	DEL	POLE	ENST00000320574	human	ensembl	74_37	-1	known	frame_shift_del	c.4647	p.K1550fs	0.119	pfam_DNA_pol_e_suA_C	pfam_DNA_pol_e_suA_C,pfam_DNA-dir_DNA_pol_B_exonuc,pfam_DNA-dir_DNA_pol_B_multi_dom,pfam_3'-5'_exonuclease_PolB-like,superfamily_RNaseH-like_dom,smart_DNA-dir_DNA_pol_B	-	no_errors	POLE	HGNC	ENSG00000177084				183	0	0	116	25	17.7305
SOX5	0	genome.wustl.edu	37	12	23998928	23998928	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	12	23998928	23998928	T	-	DEL	SOX5	ENST00000451604	human	ensembl	74_37	-1	known	frame_shift_del	c.470	p.N157fs	1.000	NULL	pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	-	no_errors	SOX5	HGNC	ENSG00000134532				205	0	0	121	8	6.20155
ITPR2	0	genome.wustl.edu	37	12	26775326	26775327	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	12	26775326	26775327	-	T	INS	ITPR2	ENST00000381340	human	ensembl	74_37	-1	known	frame_shift_ins	c.3135_3134	p.N1045fs	0.805:0.822	superfamily_ARM-type_fold	pfam_Ca-rel_channel,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ARM-type_fold,smart_MIR_motif,prints_InsP3_rcpt-bd,pfscan_MIR_motif	-	no_errors	ITPR2	HGNC	ENSG00000123104				53	0	0	27	9	25
ASUN	0	genome.wustl.edu	37	12	27069026	27069026	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	12	27069026	27069026	A	-	DEL	ASUN	ENST00000261191	human	ensembl	74_37	-1	known	frame_shift_del	c.1157	p.L386fs	1.000	pfam_Cell_cycle_regulator_Mat89Bb	pfam_Cell_cycle_regulator_Mat89Bb	-	no_errors	ASUN	HGNC	ENSG00000064102				77	0	0	47	14	22.9508
CACNA1C-AS1	0	genome.wustl.edu	37	12	2786184	2786184	+	RNA	DEL	A	A	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	12	2786184	2786184	A	-	DEL	CACNA1C-AS1	ENST00000501371	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.778	-	-	-	no_errors	CACNA1C-AS1	HGNC	ENSG00000246627				11	0	0	6	5	45.4545
KIF21A	0	genome.wustl.edu	37	12	39734129	39734129	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	12	39734129	39734129	T	-	DEL	KIF21A	ENST00000395670	human	ensembl	74_37	-1	known	frame_shift_del	c.2148	p.V717fs	1.000	NULL	pfam_Kinesin_motor_dom,pfam_WD40_repeat,superfamily_P-loop_NTPase,superfamily_WD40_repeat_dom,superfamily_Prefoldin,superfamily_ARM-type_fold,smart_Kinesin_motor_dom,smart_WD40_repeat,pfscan_Kinesin_motor_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Kinesin_motor_dom	-	no_errors	KIF21A	HGNC	ENSG00000139116				32	0	0	17	9	34.6154
LRRK2	0	genome.wustl.edu	37	12	40713870	40713870	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	12	40713870	40713870	A	-	DEL	LRRK2	ENST00000298910	human	ensembl	74_37	+1	known	frame_shift_del	c.4908	p.R1639fs	0.408	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_MIRO-like,pfam_Small_GTPase,pfam_Leu-rich_rpt,pfam_Small_GTPase_ARF/SAR,superfamily_Kinase-like_dom,superfamily_P-loop_NTPase,superfamily_ARM-type_fold,superfamily_WD40_repeat_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Small_GTPase_Rab_type,smart_Tyr_kinase_cat_dom,smart_Ser/Thr_dual-sp_kinase_dom,prints_Small_GTPase,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,tigrfam_Small_GTP-bd_dom	-	no_errors	LRRK2	HGNC	ENSG00000188906				134	0	0	91	22	19.469
KDM5A	0	genome.wustl.edu	37	12	419071	419071	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	12	419071	419071	T	-	DEL	KDM5A	ENST00000399788	human	ensembl	74_37	-1	known	frame_shift_del	c.3276	p.V1093fs	0.949	NULL	pfam_Lys_sp_deMease_like_dom,pfam_JmjC_dom,pfam_Znf_PHD-finger,pfam_ARID/BRIGHT_DNA-bd,pfam_Znf_C5HC2,pfam_TF_JmjN,superfamily_ARID/BRIGHT_DNA-bd,superfamily_Znf_FYVE_PHD,smart_TF_JmjN,smart_ARID/BRIGHT_DNA-bd,smart_Znf_PHD,smart_JmjC_dom,pfscan_TF_JmjN,pfscan_JmjC_dom,pfscan_Znf_PHD-finger,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	KDM5A	HGNC	ENSG00000073614				178	0	0	75	34	31.1927
PCED1B	0	genome.wustl.edu	37	12	47628998	47628998	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	12	47628998	47628998	G	-	DEL	PCED1B	ENST00000432328	human	ensembl	74_37	+1	known	frame_shift_del	c.152	p.E53fs	1.000	NULL	NULL	-	no_errors	PCED1B	HGNC	ENSG00000179715				96	0	0	44	19	30.1587
NDUFA9	0	genome.wustl.edu	37	12	4794302	4794303	+	Frame_Shift_Del	DEL	AA	AA	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	12	4794302	4794303	AA	-	DEL	NDUFA9	ENST00000540688	human	ensembl	74_37	+1	putative	frame_shift_del	c.51_52	p.N21fs	0.000:0.000	NULL	NULL	-	no_errors	NDUFA9	HGNC	ENSG00000139180				11	0	0	3	8	72.7273
RPAP3	0	genome.wustl.edu	37	12	48084302	48084302	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	12	48084302	48084302	T	-	DEL	RPAP3	ENST00000005386	human	ensembl	74_37	-1	known	frame_shift_del	c.666	p.D223fs	1.000	pfam_TPR_1,pfam_TPR_2,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	pfam_TPR_1,pfam_TPR_2,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	RPAP3	HGNC	ENSG00000005175				338	0	0	186	56	23.1405
KMT2D	0	genome.wustl.edu	37	12	49440135	49440136	+	Frame_Shift_Del	DEL	GT	GT	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	GT	GT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	12	49440135	49440136	GT	-	DEL	KMT2D	ENST00000301067	human	ensembl	74_37	-1	known	frame_shift_del	c.4491_4490	p.H1497fs	1.000:1.000	superfamily_Znf_FYVE_PHD	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_box_dom,smart_Znf_PHD,smart_Znf_RING,smart_HMG_box_dom,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	KMT2D	HGNC	ENSG00000167548				159	0	0	98	38	27.9412
KRT2	0	genome.wustl.edu	37	12	53044122	53044124	+	Splice_Site	DEL	CTT	CTT	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	CTT	CTT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	12	53044122	53044124	CTT	-	DEL	KRT2	ENST00000309680	human	ensembl	74_37	-1	known	splice_site_del	c.800+3_800+1	e3-1	1.000:1.000:1.000	-	-	-	no_errors	KRT2	HGNC	ENSG00000172867				413	0	0	238	90	27.439
SPRYD3	0	genome.wustl.edu	37	12	53460135	53460136	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	12	53460135	53460136	-	C	INS	SPRYD3	ENST00000301463	human	ensembl	74_37	-1	known	frame_shift_ins	c.1157_1156	p.E386fs	1.000:1.000	superfamily_ConA-like_lec_gl_sf,smart_SPla/RYanodine_receptor_subgr	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl_sf,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY	-	no_errors	SPRYD3	HGNC	ENSG00000167778				176	0	0	97	20	17.094
NEUROD4	0	genome.wustl.edu	37	12	55421128	55421128	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	12	55421128	55421128	C	-	DEL	NEUROD4	ENST00000242994	human	ensembl	74_37	+1	known	frame_shift_del	c.905	p.R304fs	0.400	pirsf_TF_bHLH_NeuroD	pfam_Neurogenic_DUF,pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pirsf_TF_bHLH_NeuroD,pfscan_bHLH_dom	-	no_errors	NEUROD4	HGNC	ENSG00000123307				1252	0	0	695	206	22.8635
DGKA	0	genome.wustl.edu	37	12	56347514	56347514	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	12	56347514	56347514	C	-	DEL	DGKA	ENST00000331886	human	ensembl	74_37	+1	known	frame_shift_del	c.2170	p.R726fs	0.749	NULL	pfam_Diacylglycerol_kin_accessory,pfam_Diacylglycerol_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,smart_EF_hand_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Diacylglycerol_kinase_cat_dom,smart_Diacylglycerol_kin_accessory,pfscan_EF_hand_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd	-	no_errors	DGKA	HGNC	ENSG00000065357				200	0	0	120	28	18.9189
SLC39A5	0	genome.wustl.edu	37	12	56630390	56630392	+	In_Frame_Del	DEL	AGA	AGA	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	AGA	AGA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	12	56630390	56630392	AGA	-	DEL	SLC39A5	ENST00000266980	human	ensembl	74_37	+1	known	in_frame_del	c.1067_1069	p.K357in_frame_del	0.803:0.161:0.076	pfam_ZIP	pfam_ZIP	-	no_errors	SLC39A5	HGNC	ENSG00000139540				222	0	0	105	20	16
ANKRD52	0	genome.wustl.edu	37	12	56638574	56638574	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	12	56638574	56638574	G	-	DEL	ANKRD52	ENST00000267116	human	ensembl	74_37	-1	known	frame_shift_del	c.2584	p.L862fs	1.000	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	ANKRD52	HGNC	ENSG00000139645				131	0	0	117	21	15.2174
APOF	0	genome.wustl.edu	37	12	56755285	56755285	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	12	56755285	56755285	C	-	DEL	APOF	ENST00000398189	human	ensembl	74_37	-1	known	frame_shift_del	c.705	p.P236fs	0.052	NULL	NULL	-	no_errors	APOF	HGNC	ENSG00000175336				123	0	0	60	20	25
MYO1A	0	genome.wustl.edu	37	12	57422573	57422573	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	12	57422573	57422573	T	-	DEL	MYO1A	ENST00000300119	human	ensembl	74_37	-1	known	frame_shift_del	c.3098	p.K1033fs	1.000	pfam_Myosin_tail_2	pfam_Myosin_head_motor_dom,pfam_Myosin_tail_2,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS	-	no_errors	MYO1A	HGNC	ENSG00000166866				230	2	0.862069	140	29	17.1598
MBD6	0	genome.wustl.edu	37	12	57919175	57919175	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	12	57919175	57919175	C	-	DEL	MBD6	ENST00000355673	human	ensembl	74_37	+1	known	frame_shift_del	c.424	p.S144fs	1.000	NULL	superfamily_DNA-bd_dom,smart_Methyl_CpG_DNA-bd,pfscan_Methyl_CpG_DNA-bd	-	no_errors	MBD6	HGNC	ENSG00000166987				141	0	0	76	26	25.4902
ARHGEF25	0	genome.wustl.edu	37	12	58004055	58004056	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	12	58004055	58004056	-	G	INS	ARHGEF25	ENST00000333972	human	ensembl	74_37	+1	known	frame_shift_ins	c.56_57	p.M22fs	1.000:1.000	NULL	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	ARHGEF25	HGNC	ENSG00000240771				26	0	0	14	5	26.3158
PPM1H	0	genome.wustl.edu	37	12	63195674	63195674	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	12	63195674	63195674	G	-	DEL	PPM1H	ENST00000228705	human	ensembl	74_37	-1	known	frame_shift_del	c.678	p.T227fs	1.000	superfamily_PP2C-like_dom,smart_PP2C-like_dom	pfam_PP2C-like_dom,superfamily_PP2C-like_dom,smart_PP2C-like_dom	-	no_errors	PPM1H	HGNC	ENSG00000111110				136	0	0	78	8	9.30233
GRIP1	0	genome.wustl.edu	37	12	66849209	66849209	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	12	66849209	66849209	T	-	DEL	GRIP1	ENST00000359742	human	ensembl	74_37	-1	known	frame_shift_del	c.1334	p.K445fs	1.000	NULL	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	GRIP1	HGNC	ENSG00000155974				279	0	0	163	16	8.93855
NUP107	0	genome.wustl.edu	37	12	69126366	69126366	+	RNA	DEL	A	A	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	12	69126366	69126366	A	-	DEL	NUP107	ENST00000401003	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	NUP107	HGNC	ENSG00000111581				40	0	0	8	12	60
ZFC3H1	0	genome.wustl.edu	37	12	72038781	72038781	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	12	72038781	72038781	T	-	DEL	ZFC3H1	ENST00000378743	human	ensembl	74_37	-1	known	frame_shift_del	c.1155	p.K385fs	1.000	NULL	pfam_Putative_zinc-finger_domain,smart_HAT,pfscan_TPR-contain_dom	-	no_errors	ZFC3H1	HGNC	ENSG00000133858				73	0	0	40	16	28.5714
C1RL	0	genome.wustl.edu	37	12	7249400	7249400	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	12	7249400	7249400	G	-	DEL	C1RL	ENST00000266542	human	ensembl	74_37	-1	known	frame_shift_del	c.1051	p.L351fs	0.908	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1	pfam_Peptidase_S1,pfam_CUB_dom,superfamily_Trypsin-like_Pept_dom,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_CUB_dom,smart_Peptidase_S1,pfscan_CUB_dom,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	C1RL	HGNC	ENSG00000139178				151	0	0	68	31	31.3131
GALNT4	0	genome.wustl.edu	37	12	89917838	89917840	+	In_Frame_Del	DEL	AGG	AGG	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	AGG	AGG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	12	89917838	89917840	AGG	-	DEL	GALNT4	ENST00000529983	human	ensembl	74_37	-1	known	in_frame_del	c.489_487	p.P163in_frame_del	0.112:1.000:0.999	pfam_Glyco_trans_2	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	GALNT4	HGNC	ENSG00000257594				140	0	0	64	14	17.9487
CCDC38	0	genome.wustl.edu	37	12	96292432	96292432	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	12	96292432	96292432	T	-	DEL	CCDC38	ENST00000344280	human	ensembl	74_37	-1	known	frame_shift_del	c.447	p.A150fs	0.125	NULL	NULL	-	no_errors	CCDC38	HGNC	ENSG00000165972				140	0	0	81	20	19.802
FAM155A	0	genome.wustl.edu	37	13	108518350	108518350	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	13	108518350	108518350	C	-	DEL	FAM155A	ENST00000375915	human	ensembl	74_37	-1	known	frame_shift_del	c.595	p.A199fs	0.042	NULL	NULL	-	no_errors	FAM155A	HGNC	ENSG00000204442				289	0	0	170	26	13.2653
UPF3A	0	genome.wustl.edu	37	13	115057211	115057211	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	13	115057211	115057211	A	-	DEL	UPF3A	ENST00000375299	human	ensembl	74_37	+1	known	frame_shift_del	c.790	p.E267fs	0.943	NULL	pfam_Nonsense_mediated_decay_UPF3	-	no_errors	UPF3A	HGNC	ENSG00000169062				24	0	0	10	4	28.5714
SACS	0	genome.wustl.edu	37	13	23912864	23912864	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	13	23912864	23912864	T	-	DEL	SACS	ENST00000382292	human	ensembl	74_37	-1	known	frame_shift_del	c.5151	p.K1717fs	0.000	NULL	pfam_HEPN,pfam_Ubiquitin_dom,superfamily_HATPase_ATP-bd,superfamily_DnaJ_domain,smart_HEPN,pfscan_HEPN,pfscan_DnaJ_domain,pfscan_Ubiquitin_supergroup	-	no_errors	SACS	HGNC	ENSG00000151835				113	0	0	44	38	46.3415
BRCA2	0	genome.wustl.edu	37	13	32972893	32972893	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	13	32972893	32972893	A	-	DEL	BRCA2	ENST00000380152	human	ensembl	74_37	+1	known	frame_shift_del	c.10243	p.K3416fs	0.000	pirsf_BRCA2	pfam_DNA_recomb/repair_BRCA2_hlx,pfam_BRCA2_repeat,pfam_BRCA2_OB_3,pfam_BRCA2_OB_1,pfam_Tower,superfamily_DNA_recomb/repair_BRCA2_hlx,superfamily_NA-bd_OB-fold,pirsf_BRCA2,pfscan_BRCA2_repeat	-	no_errors	BRCA2	HGNC	ENSG00000139618				116	0	0	70	21	23.0769
PDS5B	0	genome.wustl.edu	37	13	33344580	33344580	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	13	33344580	33344580	A	-	DEL	PDS5B	ENST00000315596	human	ensembl	74_37	+1	known	frame_shift_del	c.3946	p.K1318fs	1.000	NULL	superfamily_ARM-type_fold	-	no_errors	PDS5B	HGNC	ENSG00000083642				100	0	0	38	8	17.3913
NBEA	0	genome.wustl.edu	37	13	36125104	36125104	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	13	36125104	36125104	A	-	DEL	NBEA	ENST00000310336	human	ensembl	74_37	+1	known	frame_shift_del	c.6741	p.V2250fs	0.214	NULL	pfam_BEACH_dom,pfam_DUF1088,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_ConA-like_lec_gl_sf,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom,pfscan_WD40_repeat_dom	-	no_errors	NBEA	HGNC	ENSG00000172915				60	0	0	43	14	24.5614
SPG20	0	genome.wustl.edu	37	13	36886628	36886628	+	RNA	DEL	A	A	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	13	36886628	36886628	A	-	DEL	SPG20	ENST00000491805	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.004	-	-	-	no_errors	SPG20	HGNC	ENSG00000133104				171	0	0	83	22	20.9524
COG6	0	genome.wustl.edu	37	13	40254101	40254101	+	RNA	DEL	T	T	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	13	40254101	40254101	T	-	DEL	COG6	ENST00000465775	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	COG6	HGNC	ENSG00000133103				92	0	0	43	10	18.8679
AKAP11	0	genome.wustl.edu	37	13	42873774	42873774	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	13	42873774	42873774	T	-	DEL	AKAP11	ENST00000025301	human	ensembl	74_37	+1	known	frame_shift_del	c.892	p.S300fs	0.000	NULL	NULL	-	no_errors	AKAP11	HGNC	ENSG00000023516				169	0	0	87	36	29.2683
ZC3H13	0	genome.wustl.edu	37	13	46543660	46543661	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	13	46543660	46543661	-	T	INS	ZC3H13	ENST00000242848	human	ensembl	74_37	-1	known	frame_shift_ins	c.3019_3018	p.R1006fs	1.000:0.998	NULL	pfam_Znf_CCCH,smart_Znf_CCCH	-	no_errors	ZC3H13	HGNC	ENSG00000123200				212	0	0	126	12	8.69565
ZC3H13	0	genome.wustl.edu	37	13	46543691	46543691	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	13	46543691	46543691	T	-	DEL	ZC3H13	ENST00000242848	human	ensembl	74_37	-1	known	frame_shift_del	c.2988	p.G997fs	1.000	NULL	pfam_Znf_CCCH,smart_Znf_CCCH	-	no_errors	ZC3H13	HGNC	ENSG00000123200				291	1	0.342466	146	40	21.5054
VPS36	0	genome.wustl.edu	37	13	53000038	53000038	+	RNA	DEL	A	A	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	13	53000038	53000038	A	-	DEL	VPS36	ENST00000492650	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	VPS36	HGNC	ENSG00000136100				122	0	0	51	21	29.1667
DIAPH3	0	genome.wustl.edu	37	13	60385030	60385030	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	13	60385030	60385030	T	-	DEL	DIAPH3	ENST00000400324	human	ensembl	74_37	-1	known	frame_shift_del	c.3055	p.R1019fs	1.000	smart_FH2_Formin	pfam_FH2_Formin,pfam_FH3_dom,pfam_GTPase-bd,pfam_Drf_DAD,superfamily_ARM-type_fold,smart_FH2_Formin	-	no_errors	DIAPH3	HGNC	ENSG00000139734				50	0	0	36	10	21.7391
EDNRB	0	genome.wustl.edu	37	13	78475267	78475267	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	13	78475267	78475267	A	-	DEL	EDNRB	ENST00000334286	human	ensembl	74_37	-1	known	frame_shift_del	c.877	p.Y293fs	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_Endthln_rcpt,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_ETB_rcpt,prints_Endthln_rcpt,prints_GPCR_Rhodpsn,prints_Bombsn_rcpt	-	no_errors	EDNRB	HGNC	ENSG00000136160				155	0	0	73	28	27.7228
DCT	0	genome.wustl.edu	37	13	95121039	95121040	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	13	95121039	95121040	-	A	INS	DCT	ENST00000446125	human	ensembl	74_37	-1	known	frame_shift_ins	c.556_555	p.V185fs	1.000:0.999	pfam_Tyrosinase,superfamily_Unchr_di-copper_centre	pfam_Tyrosinase,superfamily_Unchr_di-copper_centre,prints_Tyrosinase	-	no_errors	DCT	HGNC	ENSG00000080166				372	0	0	162	45	21.7391
INF2	0	genome.wustl.edu	37	14	105174185	105174185	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	14	105174185	105174185	C	-	DEL	INF2	ENST00000392634	human	ensembl	74_37	+1	known	frame_shift_del	c.1581	p.V530fs	0.011	NULL	pfam_FH2_Formin,pfam_FH3_dom,pfam_GTPase-bd,pfam_WH2_dom,superfamily_ARM-type_fold,smart_FH2_Formin,pfscan_WH2_dom	-	no_errors	INF2	HGNC	ENSG00000203485				40	0	0	17	8	32
AHNAK2	0	genome.wustl.edu	37	14	105406621	105406621	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	14	105406621	105406621	C	-	DEL	AHNAK2	ENST00000333244	human	ensembl	74_37	-1	known	frame_shift_del	c.15167	p.G5056fs	0.013	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK2	HGNC	ENSG00000185567				280	0	0	175	53	23.2456
LOC101929718	0	genome.wustl.edu	37	14	21464349	21464349	+	RNA	DEL	T	T	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	14	21464349	21464349	T	-	DEL	LOC101929718	ENST00000557335	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RP11-84C10.4	Clone_based_vega_gene	ENSG00000258471				653	0	0	391	155	28.3883
ARHGEF40	0	genome.wustl.edu	37	14	21546604	21546604	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	14	21546604	21546604	G	-	DEL	ARHGEF40	ENST00000298694	human	ensembl	74_37	+1	known	frame_shift_del	c.2203	p.A737fs	0.899	NULL	pfam_DH-domain,superfamily_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	ARHGEF40	HGNC	ENSG00000165801				217	0	0	145	23	13.6905
ZNF219	0	genome.wustl.edu	37	14	21561669	21561670	+	RNA	INS	-	-	AG			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	14	21561669	21561670	-	AG	INS	ZNF219	ENST00000556101	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.047:0.039	-	-	-	no_errors	ZNF219	HGNC	ENSG00000165804				97	0	0	51	10	16.3934
CHD8	0	genome.wustl.edu	37	14	21859175	21859176	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	14	21859175	21859176	-	T	INS	CHD8	ENST00000399982	human	ensembl	74_37	-1	known	frame_shift_ins	c.7113_7112	p.N2371fs	0.915:1.000	NULL	pfam_SNF2_N,pfam_Chromo_domain,pfam_BRK_domain,pfam_Helicase_C,pfam_Helicase/UvrB_dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,smart_BRK_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD8	HGNC	ENSG00000100888				24	0	0	16	3	15.7895
CHD8	0	genome.wustl.edu	37	14	21883980	21883981	+	In_Frame_Ins	INS	-	-	TCT			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	14	21883980	21883981	-	TCT	INS	CHD8	ENST00000399982	human	ensembl	74_37	-1	known	in_frame_ins	c.1803_1802	p.602in_frame_insE	0.999:1.000	NULL	pfam_SNF2_N,pfam_Chromo_domain,pfam_BRK_domain,pfam_Helicase_C,pfam_Helicase/UvrB_dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,smart_BRK_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD8	HGNC	ENSG00000100888				281	1	0.35461	176	39	18.1395
HECTD1	0	genome.wustl.edu	37	14	31576889	31576891	+	In_Frame_Del	DEL	CTT	CTT	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	CTT	CTT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	14	31576889	31576891	CTT	-	DEL	HECTD1	ENST00000399332	human	ensembl	74_37	-1	known	in_frame_del	c.6502_6500	p.E2167in_frame_del	1.000:1.000:1.000	superfamily_HECT,smart_HECT,pfscan_HECT	pfam_HECT,pfam_Sad1_UNC_C,pfam_Mib_Herc2,pfam_Ankyrin_rpt,superfamily_HECT,superfamily_Ankyrin_rpt-contain_dom,superfamily_ARM-type_fold,superfamily_Galactose-bd-like,smart_Ankyrin_rpt,smart_HECT,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_HECT	-	no_errors	HECTD1	HGNC	ENSG00000092148				159	0	0	86	22	20.3704
ARHGAP5	0	genome.wustl.edu	37	14	32562696	32562696	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	14	32562696	32562696	A	-	DEL	ARHGAP5	ENST00000345122	human	ensembl	74_37	+1	known	frame_shift_del	c.2821	p.N943fs	1.000	NULL	pfam_RhoGAP_dom,pfam_FF_domain,pfam_Small_GTPase,superfamily_Rho_GTPase_activation_prot,superfamily_P-loop_NTPase,superfamily_FF_domain,smart_FF_domain,smart_RhoGAP_dom,pfscan_RhoGAP_dom,prints_Small_GTPase	-	no_errors	ARHGAP5	HGNC	ENSG00000100852				121	0	0	62	15	19.4805
FOXA1	0	genome.wustl.edu	37	14	38061905	38061907	+	In_Frame_Del	DEL	GGA	GGA	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	GGA	GGA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	14	38061905	38061907	GGA	-	DEL	FOXA1	ENST00000250448	human	ensembl	74_37	-1	known	in_frame_del	c.84_82	p.S28in_frame_del	0.197:1.000:1.000	pfam_Fork-head_N	pfam_TF_fork_head,pfam_Fork-head_N,pfam_Forkhead_box_C,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXA1	HGNC	ENSG00000129514				191	0	0	84	16	16
CTAGE5	0	genome.wustl.edu	37	14	39746243	39746243	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	14	39746243	39746243	T	-	DEL	CTAGE5	ENST00000396158	human	ensembl	74_37	+1	known	frame_shift_del	c.169	p.L59fs	0.000	NULL	NULL	-	no_errors	CTAGE5	HGNC	ENSG00000150527				204	2	0.970874	119	38	24.2038
C14orf28	0	genome.wustl.edu	37	14	45369723	45369724	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	14	45369723	45369724	-	G	INS	C14orf28	ENST00000325192	human	ensembl	74_37	+1	known	frame_shift_ins	c.85_86	p.V32fs	1.000:1.000	NULL	NULL	-	no_errors	C14orf28	HGNC	ENSG00000179476				171	0	0	85	42	33.0709
FAM179B	0	genome.wustl.edu	37	14	45481238	45481239	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	14	45481238	45481239	-	A	INS	FAM179B	ENST00000361577	human	ensembl	74_37	+1	known	frame_shift_ins	c.3198_3199	p.I1068fs	0.993:0.997	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	FAM179B	HGNC	ENSG00000198718				132	0	0	72	15	17.2414
GNPNAT1	0	genome.wustl.edu	37	14	53250196	53250196	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	14	53250196	53250196	A	-	DEL	GNPNAT1	ENST00000216410	human	ensembl	74_37	-1	known	frame_shift_del	c.162	p.F54fs	0.996	superfamily_Acyl_CoA_acyltransferase,pfscan_GNAT_dom	pfam_GNAT_dom,superfamily_Acyl_CoA_acyltransferase,pfscan_GNAT_dom	-	no_errors	GNPNAT1	HGNC	ENSG00000100522				89	0	0	50	14	21.875
DDHD1	0	genome.wustl.edu	37	14	53619422	53619422	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	14	53619422	53619422	C	-	DEL	DDHD1	ENST00000323669	human	ensembl	74_37	-1	known	frame_shift_del	c.395	p.G132fs	0.957	NULL	pfam_DDHD,pfscan_DDHD	-	no_errors	DDHD1	HGNC	ENSG00000100523				30	0	0	20	2	9.09091
OTX2	0	genome.wustl.edu	37	14	57271049	57271049	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	14	57271049	57271049	G	-	DEL	OTX2	ENST00000339475	human	ensembl	74_37	-1	known	frame_shift_del	c.130	p.R44fs	0.947	superfamily_Homeodomain-like,pfscan_Homeobox_dom	pfam_Otx_TF_C,pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Otx2_TF,prints_Otx_TF	-	no_errors	OTX2	HGNC	ENSG00000165588				115	0	0	63	17	21.25
KIAA0586	0	genome.wustl.edu	37	14	58895013	58895013	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	14	58895013	58895013	A	-	DEL	KIAA0586	ENST00000261244	human	ensembl	74_37	+1	known	frame_shift_del	c.31	p.K13fs	0.000	NULL	NULL	-	no_errors	KIAA0586	HGNC	ENSG00000100578				77	0	0	40	3	6.97674
DHRS7	0	genome.wustl.edu	37	14	60616897	60616897	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	14	60616897	60616897	A	-	DEL	DHRS7	ENST00000216500	human	ensembl	74_37	-1	known	frame_shift_del	c.642	p.F214fs	0.812	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,prints_Glc/ribitol_DH,prints_DH_sc/Rdtase_SDR	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,prints_Glc/ribitol_DH,prints_DH_sc/Rdtase_SDR	-	no_errors	DHRS7	HGNC	ENSG00000100612				116	0	0	67	10	12.987
KCNH5	0	genome.wustl.edu	37	14	63417154	63417155	+	Frame_Shift_Del	DEL	AC	AC	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	AC	AC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	14	63417154	63417155	AC	-	DEL	KCNH5	ENST00000322893	human	ensembl	74_37	-1	known	frame_shift_del	c.1066_1065	p.F356fs	1.000:0.994	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom,pfam_cNMP-bd_dom,pfam_PAS_fold,superfamily_cNMP-bd-like,superfamily_PAS,smart_PAC,smart_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG,prints_K_chnl_volt-dep_EAG/ELK/ERG,prints_K_chnl_volt-dep_ERG,pfscan_cNMP-bd_dom,pfscan_PAS-assoc_C,tigrfam_PAS	-	no_errors	KCNH5	HGNC	ENSG00000140015				206	0	0	132	16	10.8108
ENSG00000272909	0	genome.wustl.edu	37	14	64908057	64908058	+	RNA	INS	-	-	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	14	64908057	64908058	-	T	INS	ENSG00000272909	ENST00000609125	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.002:0.005	-	-	-	no_errors	CTD-2555O16.4	Clone_based_vega_gene	ENSG00000272909				129	0	0	95	26	21.4876
PTPN21	0	genome.wustl.edu	37	14	88940113	88940113	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	14	88940113	88940113	T	-	DEL	PTPN21	ENST00000328736	human	ensembl	74_37	-1	known	frame_shift_del	c.2545	p.I849fs	0.995	pirsf_Tyr_Pase_non-rcpt_typ-14/21	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_FERM_central,pfam_FERM_N,pfam_FERM_PH-like_C,superfamily_FERM_central,smart_Band_41_domain,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pirsf_Tyr_Pase_non-rcpt_typ-14/21,pfscan_FERM_domain,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt,prints_Band_41_fam	-	no_errors	PTPN21	HGNC	ENSG00000070778				209	1	0.47619	140	52	27.0833
KCNK13	0	genome.wustl.edu	37	14	90651284	90651285	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	14	90651284	90651285	-	G	INS	KCNK13	ENST00000282146	human	ensembl	74_37	+1	known	frame_shift_ins	c.1164_1165	p.V390fs	0.587:1.000	NULL	pfam_2pore_dom_K_chnl_dom,prints_2pore_dom_K_chnl_THIK,prints_2pore_dom_K_chnl,prints_2pore_dom_K_chnl_TASK	-	no_errors	KCNK13	HGNC	ENSG00000152315				75	0	0	55	5	8.33333
UNC79	0	genome.wustl.edu	37	14	94088050	94088050	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	14	94088050	94088050	A	-	DEL	UNC79	ENST00000553484	human	ensembl	74_37	+1	known	frame_shift_del	c.4537	p.K1515fs	1.000	superfamily_ARM-type_fold	superfamily_P-loop_NTPase,superfamily_ARM-type_fold	-	no_errors	UNC79	HGNC	ENSG00000133958				147	0	0	91	30	24.7934
TCL6	0	genome.wustl.edu	37	14	96136820	96136821	+	RNA	INS	-	-	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	14	96136820	96136821	-	A	INS	TCL6	ENST00000352367	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.011:0.007	-	-	-	no_errors	TCL6	HGNC	ENSG00000187621				75	0	0	50	20	28.5714
VIMP	0	genome.wustl.edu	37	15	101816826	101816828	+	In_Frame_Del	DEL	AGA	AGA	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	AGA	AGA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	15	101816826	101816828	AGA	-	DEL	VIMP	ENST00000537379	human	ensembl	74_37	-1	known	in_frame_del	c.131_129	p.L44in_frame_del	0.998:0.950:0.002	pfam_Selenoprotein_S	pfam_Selenoprotein_S	-	no_errors	VIMP	HGNC	ENSG00000131871				128	0	0	69	25	26.5957
HERC2P3	0	genome.wustl.edu	37	15	20588685	20588685	+	RNA	DEL	A	A	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	15	20588685	20588685	A	-	DEL	HERC2P3	ENST00000426501	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	HERC2P3	HGNC	ENSG00000180229				86	0	0	51	14	21.5385
SNHG14	0	genome.wustl.edu	37	15	25227367	25227367	+	RNA	DEL	T	T	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	15	25227367	25227367	T	-	DEL	SNHG14	ENST00000551361	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SNHG14	HGNC	ENSG00000224078				24	0	0	8	6	42.8571
SNORD116-6	0	genome.wustl.edu	37	15	25310193	25310193	+	RNA	DEL	A	A	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	15	25310193	25310193	A	-	DEL	SNORD116-6	ENST00000384711	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	SNORD116-6	HGNC	ENSG00000207442				224	0	0	120	30	20
HERC2	0	genome.wustl.edu	37	15	28421670	28421671	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	15	28421670	28421671	-	G	INS	HERC2	ENST00000261609	human	ensembl	74_37	-1	known	frame_shift_ins	c.9590_9589	p.Q3197fs	1.000:1.000	pfam_Reg_chr_condens,superfamily_RCC1/BLIP-II,pfscan_Reg_chr_condens	pfam_Reg_chr_condens,pfam_HECT,pfam_CPH_domain,pfam_Mib_Herc2,pfam_Cyt_B5-like_heme/steroid-bd,pfam_Znf_ZZ,pfam_APC_su10/DOC_dom,superfamily_RCC1/BLIP-II,superfamily_HECT,superfamily_Galactose-bd-like,superfamily_Cyt_B5-like_heme/steroid-bd,superfamily_UBA-like,superfamily_CUB_dom,smart_Beta-propeller_rpt_TECPR,smart_Znf_ZZ,smart_HECT,pfscan_HECT,pfscan_Znf_ZZ,pfscan_Reg_chr_condens,pfscan_Cyt_B5-like_heme/steroid-bd,prints_Reg_chr_condens	-	no_errors	HERC2	HGNC	ENSG00000128731				284	0	0	146	42	22.3404
FAN1	0	genome.wustl.edu	37	15	31198007	31198009	+	In_Frame_Del	DEL	GTG	GTG	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	GTG	GTG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	15	31198007	31198009	GTG	-	DEL	FAN1	ENST00000362065	human	ensembl	74_37	+1	known	in_frame_del	c.1141_1143	p.V382in_frame_del	0.013:0.982:0.996	NULL	pfam_VRR_NUC,smart_Znf_Rad18_put	-	no_errors	FAN1	HGNC	ENSG00000198690				350	0	0	171	48	21.9178
AQR	0	genome.wustl.edu	37	15	35224524	35224524	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	15	35224524	35224524	A	-	DEL	AQR	ENST00000156471	human	ensembl	74_37	-1	known	frame_shift_del	c.895	p.S299fs	1.000	NULL	superfamily_P-loop_NTPase	-	no_errors	AQR	HGNC	ENSG00000021776				194	0	0	86	37	30.0813
CASC5	0	genome.wustl.edu	37	15	40915672	40915672	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	15	40915672	40915672	A	-	DEL	CASC5	ENST00000346991	human	ensembl	74_37	+1	known	frame_shift_del	c.3288	p.N1098fs	0.270	NULL	NULL	-	no_errors	CASC5	HGNC	ENSG00000137812				138	0	0	84	12	12.5
ENSG00000259521	0	genome.wustl.edu	37	15	41319994	41319994	+	RNA	DEL	A	A	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	15	41319994	41319994	A	-	DEL	ENSG00000259521	ENST00000560178	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	RP11-540O11.4	Clone_based_vega_gene	ENSG00000259521				40	0	0	12	8	40
RPAP1	0	genome.wustl.edu	37	15	41815100	41815101	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	15	41815100	41815101	-	G	INS	RPAP1	ENST00000304330	human	ensembl	74_37	-1	known	frame_shift_ins	c.2605_2604	p.S868fs	1.000:0.997	NULL	pfam_RNA_pol_II_AP1_C,pfam_RNA_pol_II_AP1_N,superfamily_ARM-type_fold	-	no_errors	RPAP1	HGNC	ENSG00000103932				87	0	0	61	11	15.2778
PLA2G4E	0	genome.wustl.edu	37	15	42275979	42275981	+	In_Frame_Del	DEL	CTT	CTT	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	CTT	CTT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	15	42275979	42275981	CTT	-	DEL	PLA2G4E	ENST00000413860	human	ensembl	74_37	-1	known	in_frame_del	c.2493_2491	p.K831in_frame_del	0.156:0.613:0.992	superfamily_Acyl_Trfase/lysoPLipase,pfscan_LysoPLipase_cat_dom	pfam_LysoPLipase_cat_dom,pfam_C2_dom,superfamily_Acyl_Trfase/lysoPLipase,superfamily_C2_dom,smart_C2_dom,smart_LysoPLipase_cat_dom,pfscan_C2_dom,pfscan_LysoPLipase_cat_dom	-	no_errors	PLA2G4E	HGNC	ENSG00000188089				13	0	0	8	3	27.2727
TUBGCP4	0	genome.wustl.edu	37	15	43670055	43670055	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	15	43670055	43670055	T	-	DEL	TUBGCP4	ENST00000260383	human	ensembl	74_37	+1	known	frame_shift_del	c.395	p.S135fs	1.000	pfam_TUBGCP	pfam_TUBGCP	-	no_errors	TUBGCP4	HGNC	ENSG00000137822				173	0	0	148	10	6.32911
CEP152	0	genome.wustl.edu	37	15	49036443	49036443	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	15	49036443	49036443	T	-	DEL	CEP152	ENST00000380950	human	ensembl	74_37	-1	known	frame_shift_del	c.3829	p.I1277fs	1.000	NULL	NULL	-	no_errors	CEP152	HGNC	ENSG00000103995				96	0	0	71	19	21.1111
FAM214A	0	genome.wustl.edu	37	15	52901069	52901069	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	15	52901069	52901069	T	-	DEL	FAM214A	ENST00000261844	human	ensembl	74_37	-1	known	frame_shift_del	c.2042	p.N681fs	0.001	NULL	NULL	-	no_errors	FAM214A	HGNC	ENSG00000047346				100	0	0	34	15	30.6122
ZNF280D	0	genome.wustl.edu	37	15	56924285	56924285	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	15	56924285	56924285	T	-	DEL	ZNF280D	ENST00000267807	human	ensembl	74_37	-1	known	frame_shift_del	c.2351	p.N784fs	0.121	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF280D	HGNC	ENSG00000137871				86	0	0	54	16	22.8571
ENSG00000261460	0	genome.wustl.edu	37	15	72638557	72638557	+	RNA	DEL	C	C	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	15	72638557	72638557	C	-	DEL	ENSG00000261460	ENST00000570175	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RP11-106M3.3	Clone_based_vega_gene	ENSG00000261460				37	0	0	13	9	40.9091
STRA6	0	genome.wustl.edu	37	15	74494643	74494643	+	RNA	DEL	A	A	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	15	74494643	74494643	A	-	DEL	STRA6	ENST00000573456	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.003	-	-	-	no_errors	STRA6	HGNC	ENSG00000137868				31	0	0	37	7	15.9091
IL16	0	genome.wustl.edu	37	15	81585324	81585325	+	Frame_Shift_Del	DEL	AG	AG	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	15	81585324	81585325	AG	-	DEL	IL16	ENST00000302987	human	ensembl	74_37	+1	known	frame_shift_del	c.1848_1849	p.N620fs	0.000:0.008	NULL	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ,prints_IL-16	-	no_errors	IL16	HGNC	ENSG00000172349				96	0	0	65	6	8.4507
KIF7	0	genome.wustl.edu	37	15	90190146	90190147	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	15	90190146	90190147	-	G	INS	KIF7	ENST00000394412	human	ensembl	74_37	-1	known	frame_shift_ins	c.1703_1702	p.L568fs	0.995:0.995	NULL	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF7	HGNC	ENSG00000166813				109	0	0	60	16	21.0526
TVP23A	0	genome.wustl.edu	37	16	10867203	10867203	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	16	10867203	10867203	A	-	DEL	TVP23A	ENST00000299866	human	ensembl	74_37	-1	known	frame_shift_del	c.420	p.F140fs	1.000	pfam_DUF846_euk	pfam_DUF846_euk	-	no_errors	TVP23A	HGNC	ENSG00000166676				138	0	0	71	19	21.1111
NPRL3	0	genome.wustl.edu	37	16	167321	167321	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	16	167321	167321	A	-	DEL	NPRL3	ENST00000399953	human	ensembl	74_37	-1	known	frame_shift_del	c.372	p.F124fs	0.982	pfam_NPR3	pfam_NPR3,superfamily_Galactose-bd-like	-	no_errors	NPRL3	HGNC	ENSG00000103148				50	0	0	33	9	21.4286
KNOP1	0	genome.wustl.edu	37	16	19725706	19725706	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	16	19725706	19725706	T	-	DEL	KNOP1	ENST00000219837	human	ensembl	74_37	-1	known	frame_shift_del	c.652	p.I218fs	0.397	NULL	NULL	-	no_errors	KNOP1	HGNC	ENSG00000103550				216	0	0	161	22	12.0219
ACSM3	0	genome.wustl.edu	37	16	20807775	20807776	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	16	20807775	20807776	-	A	INS	ACSM3	ENST00000289416	human	ensembl	74_37	+1	known	frame_shift_ins	c.1638_1639	p.T548fs	0.822:0.991	NULL	pfam_AMP-dep_Synth/Lig	-	no_errors	ACSM3	HGNC	ENSG00000005187				139	0	0	75	24	24.2424
BRICD5	0	genome.wustl.edu	37	16	2259579	2259579	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	16	2259579	2259579	G	-	DEL	BRICD5	ENST00000562360	human	ensembl	74_37	-1	known	frame_shift_del	c.567	p.I190fs	1.000	pfam_BRICHOS_dom,pfscan_BRICHOS_dom	pfam_BRICHOS_dom,pfscan_BRICHOS_dom	-	no_errors	BRICD5	HGNC	ENSG00000182685				293	1	0.340136	164	49	23.0047
AQP8	0	genome.wustl.edu	37	16	25232875	25232875	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	16	25232875	25232875	G	-	DEL	AQP8	ENST00000219660	human	ensembl	74_37	+1	known	frame_shift_del	c.358	p.M122fs	1.000	pfam_MIP,superfamily_Aquaporin-like,prints_MIP	pfam_MIP,superfamily_Aquaporin-like,prints_Aquaporin_8,prints_MIP	-	no_errors	AQP8	HGNC	ENSG00000103375				258	0	0	141	30	17.5439
PAGR1	0	genome.wustl.edu	37	16	29831021	29831021	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	16	29831021	29831021	C	-	DEL	PAGR1	ENST00000609618	human	ensembl	74_37	+1	known	frame_shift_del	c.711	p.P239fs	1.000	NULL	NULL	-	no_errors	PAGR1	Uniprot_gn	ENSG00000263136				243	0	0	124	10	7.46269
CLDN6	0	genome.wustl.edu	37	16	3065455	3065456	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	16	3065455	3065456	-	C	INS	CLDN6	ENST00000328796	human	ensembl	74_37	-1	known	frame_shift_ins	c.568_567	p.S189fs	0.016:0.007	prints_Claudin6	pfam_PMP22/EMP/MP20/Claudin,prints_Claudin,prints_Claudin6	-	no_errors	CLDN6	HGNC	ENSG00000184697				101	0	0	75	12	13.7931
OR1F1	0	genome.wustl.edu	37	16	3254416	3254416	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	16	3254416	3254416	C	-	DEL	OR1F1	ENST00000304646	human	ensembl	74_37	+1	known	frame_shift_del	c.170	p.M59fs	0.022	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR1F1	HGNC	ENSG00000168124				268	0	0	185	11	5.61224
ZSCAN32	0	genome.wustl.edu	37	16	3433031	3433032	+	Frame_Shift_Del	DEL	CA	CA	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	CA	CA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	16	3433031	3433032	CA	-	DEL	ZSCAN32	ENST00000396846	human	ensembl	74_37	-1	known	frame_shift_del	c.1915_1914	p.C638fs	1.000:1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZSCAN32	HGNC	ENSG00000140987				170	0	0	83	14	14.433
CREBBP	0	genome.wustl.edu	37	16	3817720	3817721	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	16	3817720	3817721	-	T	INS	CREBBP	ENST00000262367	human	ensembl	74_37	-1	known	frame_shift_ins	c.3251_3250	p.I1084fs	1.000:1.000	superfamily_Bromodomain,smart_Bromodomain	pfam_Histone_H3-K56_AcTrfase_RTT109,pfam_Nuc_rcpt_coact_CREBbp,pfam_KIX_dom,pfam_DUF902_CREBbp,pfam_Znf_TAZ,pfam_Bromodomain,pfam_Znf_ZZ,superfamily_Bromodomain,superfamily_Znf_TAZ,superfamily_KIX_dom,superfamily_Nuc_rcpt_coact,superfamily_Znf_FYVE_PHD,smart_Znf_TAZ,smart_Bromodomain,smart_Znf_ZZ,pfscan_KIX_dom,pfscan_Znf_TAZ,pfscan_Znf_ZZ,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	CREBBP	HGNC	ENSG00000005339				290	0	0	165	47	22.1698
NETO2	0	genome.wustl.edu	37	16	47120148	47120148	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	16	47120148	47120148	T	-	DEL	NETO2	ENST00000562435	human	ensembl	74_37	-1	known	frame_shift_del	c.986	p.N329fs	1.000	pfam_LDrepeatLR_classA_rpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,pfscan_LDrepeatLR_classA_rpt	pfam_CUB_dom,pfam_LDrepeatLR_classA_rpt,superfamily_CUB_dom,superfamily_LDrepeatLR_classA_rpt,smart_CUB_dom,smart_LDrepeatLR_classA_rpt,pfscan_CUB_dom,pfscan_LDrepeatLR_classA_rpt	-	no_errors	NETO2	HGNC	ENSG00000171208				105	0	0	94	8	7.84314
SEPT12	0	genome.wustl.edu	37	16	4827851	4827851	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	16	4827851	4827851	G	-	DEL	SEPT12	ENST00000268231	human	ensembl	74_37	-1	known	frame_shift_del	c.1024	p.R342fs	0.000	pirsf_Septin	pfam_Cell_div_GTP-bd,pfam_AIG1,superfamily_P-loop_NTPase,pirsf_Septin	-	no_errors	SEPT12	HGNC	ENSG00000140623				30	0	0	6	3	33.3333
GLYR1	0	genome.wustl.edu	37	16	4862229	4862229	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	16	4862229	4862229	C	-	DEL	GLYR1	ENST00000321919	human	ensembl	74_37	-1	known	frame_shift_del	c.1140	p.R381fs	0.170	pfam_6PGDH_NADP-bd	pfam_6PGDH_NADP-bd,pfam_PWWP_dom,superfamily_6-PGluconate_DH_C-like,smart_PWWP_dom,pfscan_PWWP_dom	-	no_errors	GLYR1	HGNC	ENSG00000140632				69	0	0	38	6	13.6364
PPL	0	genome.wustl.edu	37	16	4944499	4944500	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	16	4944499	4944500	-	G	INS	PPL	ENST00000345988	human	ensembl	74_37	-1	known	frame_shift_ins	c.1363_1362	p.T454fs	0.994:0.933	smart_Spectrin/alpha-actinin	pfam_Plectin_repeat,smart_Spectrin/alpha-actinin,smart_Plectin_repeat	-	no_errors	PPL	HGNC	ENSG00000118898				141	0	0	95	27	22.1311
NKD1	0	genome.wustl.edu	37	16	50667134	50667135	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	16	50667134	50667135	-	C	INS	NKD1	ENST00000268459	human	ensembl	74_37	+1	known	frame_shift_ins	c.855_856	p.R287fs	1.000:1.000	NULL	pfscan_EF_hand_dom	-	no_errors	NKD1	HGNC	ENSG00000140807				169	0	0	85	34	28.5714
RBL2	0	genome.wustl.edu	37	16	53476704	53476704	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	16	53476704	53476704	T	-	DEL	RBL2	ENST00000262133	human	ensembl	74_37	+1	known	frame_shift_del	c.506	p.Q171fs	1.000	pfam_RB_N	pfam_RB_A,pfam_RB_B,pfam_RB_N,superfamily_Cyclin-like,smart_Cyclin-like	-	no_errors	RBL2	HGNC	ENSG00000103479				122	0	0	64	19	22.8916
NUDT21	0	genome.wustl.edu	37	16	56485066	56485066	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	16	56485066	56485066	C	-	DEL	NUDT21	ENST00000300291	human	ensembl	74_37	-1	known	frame_shift_del	c.49	p.V17fs	1.000	pirsf_Cleav_polyA_spec_factor_su5	superfamily_NUDIX_hydrolase_dom-like,pirsf_Cleav_polyA_spec_factor_su5	-	no_errors	NUDT21	HGNC	ENSG00000167005				159	0	0	100	12	10.7143
CNOT1	0	genome.wustl.edu	37	16	58589340	58589340	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	16	58589340	58589340	A	-	DEL	CNOT1	ENST00000317147	human	ensembl	74_37	-1	known	frame_shift_del	c.2706	p.Q904fs	0.995	NULL	pfam_CCR4-Not_Not1_C,superfamily_ARM-type_fold	-	no_errors	CNOT1	HGNC	ENSG00000125107				366	0	0	218	46	17.4242
FHOD1	0	genome.wustl.edu	37	16	67267852	67267852	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	16	67267852	67267852	G	-	DEL	FHOD1	ENST00000258201	human	ensembl	74_37	-1	known	frame_shift_del	c.1754	p.P585fs	1.000	NULL	pfam_FH2_Formin,superfamily_ARM-type_fold,smart_FH2_Formin	-	no_errors	FHOD1	HGNC	ENSG00000135723				40	0	0	20	15	42.8571
KCTD19	0	genome.wustl.edu	37	16	67325658	67325658	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	16	67325658	67325658	G	-	DEL	KCTD19	ENST00000304372	human	ensembl	74_37	-1	known	frame_shift_del	c.2301	p.V768fs	0.051	NULL	pfam_T1-type_BTB,superfamily_BTB/POZ_fold	-	no_errors	KCTD19	HGNC	ENSG00000168676				129	0	0	73	24	24.7423
CTCF	0	genome.wustl.edu	37	16	67645338	67645339	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	16	67645338	67645339	-	A	INS	CTCF	ENST00000264010	human	ensembl	74_37	+1	known	frame_shift_ins	c.603_604	p.T203fs	1.000:1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	CTCF	HGNC	ENSG00000102974				162	0	0	86	23	21.1009
COG4	0	genome.wustl.edu	37	16	70543282	70543282	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	16	70543282	70543282	C	-	DEL	COG4	ENST00000323786	human	ensembl	74_37	-1	known	frame_shift_del	c.854	p.R285fs	1.000	pfam_COG_su4,smart_COG_su4	pfam_COG_su4,smart_COG_su4	-	no_errors	COG4	HGNC	ENSG00000103051				132	0	0	81	18	18.1818
ZFHX3	0	genome.wustl.edu	37	16	72830903	72830904	+	Frame_Shift_Del	DEL	CT	CT	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	CT	CT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	16	72830903	72830904	CT	-	DEL	ZFHX3	ENST00000268489	human	ensembl	74_37	-1	known	frame_shift_del	c.5678_5677	p.R1893fs	0.999:0.991	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Znf_C2H2-like,smart_Znf_U1,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	ZFHX3	HGNC	ENSG00000140836				186	0	0	132	8	5.71429
ZFHX3	0	genome.wustl.edu	37	16	72991671	72991671	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	16	72991671	72991671	C	-	DEL	ZFHX3	ENST00000268489	human	ensembl	74_37	-1	known	frame_shift_del	c.2374	p.A792fs	1.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Znf_C2H2-like,smart_Znf_U1,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	ZFHX3	HGNC	ENSG00000140836				161	0	0	75	21	21.875
CHTF18	0	genome.wustl.edu	37	16	846972	846972	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	16	846972	846972	C	-	DEL	CHTF18	ENST00000317063	human	ensembl	74_37	+1	known	frame_shift_del	c.3240	p.P1082fs	0.000	NULL	pfam_ATPase_AAA_core,pfam_ATPase_dyneun-rel_AAA,pfam_DNA_helicase_Holl-junc_RuvB_N,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	CHTF18	HGNC	ENSG00000127586				300	0	0	240	13	5.13834
C16orf74	0	genome.wustl.edu	37	16	85743813	85743813	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	16	85743813	85743813	G	-	DEL	C16orf74	ENST00000284245	human	ensembl	74_37	-1	known	frame_shift_del	c.129	p.T44fs	0.601	NULL	NULL	-	no_errors	C16orf74	HGNC	ENSG00000154102				15	0	0	6	3	33.3333
ANKRD11	0	genome.wustl.edu	37	16	89349641	89349641	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	16	89349641	89349641	T	-	DEL	ANKRD11	ENST00000301030	human	ensembl	74_37	-1	known	frame_shift_del	c.3309	p.D1104fs	1.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD11	HGNC	ENSG00000167522				421	0	0	271	108	28.496
CENPBD1	0	genome.wustl.edu	37	16	90038141	90038141	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	16	90038141	90038141	T	-	DEL	CENPBD1	ENST00000314994	human	ensembl	74_37	-1	known	frame_shift_del	c.190	p.I64fs	0.056	pfam_HTH_Psq,superfamily_Homeodomain-like,pfscan_HTH_Psq	pfam_HTH_CenpB_DNA-bd_dom,pfam_HTH_Psq,superfamily_Homeodomain-like,pfscan_HTH_Psq	-	no_errors	CENPBD1	HGNC	ENSG00000177946				62	0	0	27	14	34.1463
GRIN2A	0	genome.wustl.edu	37	16	9857380	9857380	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	16	9857380	9857380	T	-	DEL	GRIN2A	ENST00000330684	human	ensembl	74_37	-1	known	frame_shift_del	c.4021	p.S1341fs	0.070	pfam_NMDAR2_C	pfam_NMDAR2_C,pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIN2A	HGNC	ENSG00000183454				170	0	0	70	36	33.9623
ZSWIM7	0	genome.wustl.edu	37	17	15897110	15897110	+	RNA	DEL	A	A	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	17	15897110	15897110	A	-	DEL	ZSWIM7	ENST00000475498	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	ZSWIM7	HGNC	ENSG00000214941				77	0	0	41	10	19.6078
C17orf76-AS1	0	genome.wustl.edu	37	17	16344524	16344524	+	RNA	DEL	A	A	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	17	16344524	16344524	A	-	DEL	C17orf76-AS1	ENST00000460249	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	C17orf76-AS1	HGNC	ENSG00000175061				126	1	0.787402	72	14	16.2791
MPRIP	0	genome.wustl.edu	37	17	17046886	17046886	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	17	17046886	17046886	C	-	DEL	MPRIP	ENST00000395811	human	ensembl	74_37	+1	known	frame_shift_del	c.1052	p.P353fs	0.999	NULL	pfam_Pleckstrin_homology,superfamily_Ferritin-like_SF,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	MPRIP	HGNC	ENSG00000133030				34	0	0	17	6	26.087
NT5M	0	genome.wustl.edu	37	17	17250190	17250190	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	17	17250190	17250190	C	-	DEL	NT5M	ENST00000389022	human	ensembl	74_37	+1	known	frame_shift_del	c.616	p.R208fs	1.000	pfam_5'(3')-deoxyribonucleotidase,superfamily_HAD-like_dom	pfam_5'(3')-deoxyribonucleotidase,superfamily_HAD-like_dom	-	no_errors	NT5M	HGNC	ENSG00000205309				91	0	0	60	11	15.493
ZNF286B	0	genome.wustl.edu	37	17	18566528	18566529	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	17	18566528	18566529	-	A	INS	ZNF286B	ENST00000545289	human	ensembl	74_37	-1	known	frame_shift_ins	c.291_290	p.L97fs	0.526:0.532	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF286B	HGNC	ENSG00000249459				88	0	0	59	14	19.1781
UBBP4	0	genome.wustl.edu	37	17	21731488	21731489	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	17	21731488	21731489	-	C	INS	UBBP4	ENST00000578713	human	ensembl	74_37	+1	putative	frame_shift_ins	c.563_564	p.D191fs	1.000:1.000	pfam_Ubiquitin_dom,pfam_Rad60/SUMO_like,smart_Ubiquitin_dom,pfscan_Ubiquitin_supergroup	pfam_Ubiquitin_dom,pfam_Rad60/SUMO_like,smart_Ubiquitin_dom,pfscan_Ubiquitin_supergroup,prints_Ubiquitin	-	no_errors	UBBP4	HGNC	ENSG00000263563				89	0	0	49	10	16.9492
NLK	0	genome.wustl.edu	37	17	26449739	26449740	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	17	26449739	26449740	-	T	INS	NLK	ENST00000407008	human	ensembl	74_37	+1	known	frame_shift_ins	c.569_570	p.K193fs	1.000:1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	NLK	HGNC	ENSG00000087095				174	0	0	124	12	8.82353
PIGS	0	genome.wustl.edu	37	17	26898027	26898027	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	17	26898027	26898027	G	-	DEL	PIGS	ENST00000582721	human	ensembl	74_37	-1	known	frame_shift_del	c.214	p.R72fs	0.000	NULL	pfam_PtdIno-glycan_biosynth_class_S	-	no_errors	PIGS	HGNC	ENSG00000087111				200	0	0	109	35	24.3056
PHF12	0	genome.wustl.edu	37	17	27233246	27233247	+	Frame_Shift_Del	DEL	GA	GA	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	GA	GA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	17	27233246	27233247	GA	-	DEL	PHF12	ENST00000332830	human	ensembl	74_37	-1	known	frame_shift_del	c.2970_2969	p.L990fs	1.000:1.000	NULL	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,superfamily_SMAD_FHA_domain,smart_Znf_PHD,pfscan_FHA_dom,pfscan_Znf_PHD-finger	-	no_errors	PHF12	HGNC	ENSG00000109118				97	0	0	47	5	9.61538
TMEM132E	0	genome.wustl.edu	37	17	32953916	32953916	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	17	32953916	32953916	C	-	DEL	TMEM132E	ENST00000321639	human	ensembl	74_37	+1	known	frame_shift_del	c.568	p.R192fs	0.996	NULL	NULL	-	no_errors	TMEM132E	HGNC	ENSG00000181291				65	0	0	32	13	28.8889
DDX52	0	genome.wustl.edu	37	17	35993318	35993319	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	17	35993318	35993319	-	T	INS	DDX52	ENST00000349699	human	ensembl	74_37	-1	known	frame_shift_ins	c.417_416	p.I140fs	1.000:1.000	NULL	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX52	HGNC	ENSG00000141141				181	0	0	137	12	8.05369
CCDC43	0	genome.wustl.edu	37	17	42756253	42756253	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	17	42756253	42756253	T	-	DEL	CCDC43	ENST00000315286	human	ensembl	74_37	-1	known	frame_shift_del	c.646	p.R216fs	1.000	NULL	NULL	-	no_errors	CCDC43	HGNC	ENSG00000180329				76	0	0	37	18	32.7273
KIF18B	0	genome.wustl.edu	37	17	43006220	43006220	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	17	43006220	43006220	C	-	DEL	KIF18B	ENST00000339151	human	ensembl	74_37	-1	known	frame_shift_del	c.1726	p.A576fs	0.000	NULL	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF18B	HGNC	ENSG00000186185				61	0	0	23	8	25.8065
GGT6	0	genome.wustl.edu	37	17	4461470	4461471	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	17	4461470	4461471	-	T	INS	GGT6	ENST00000574154	human	ensembl	74_37	-1	known	frame_shift_ins	c.1322_1321	p.R441fs	0.000:0.003	NULL	pfam_GGT_peptidase,prints_GGT_peptidase	-	no_errors	GGT6	HGNC	ENSG00000167741				125	0	0	71	14	16.4706
SP2	0	genome.wustl.edu	37	17	45994350	45994350	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	17	45994350	45994350	C	-	DEL	SP2	ENST00000376741	human	ensembl	74_37	+1	known	frame_shift_del	c.913	p.K307fs	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	SP2	HGNC	ENSG00000167182				151	0	0	112	8	6.66667
XYLT2	0	genome.wustl.edu	37	17	48433967	48433967	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	17	48433967	48433967	C	-	DEL	XYLT2	ENST00000017003	human	ensembl	74_37	+1	known	frame_shift_del	c.1578	p.G529fs	1.000	pfam_XylT	pfam_XylT,pfam_Glyco_trans_14	-	no_errors	XYLT2	HGNC	ENSG00000015532				138	0	0	91	18	16.5138
USP6	0	genome.wustl.edu	37	17	5049390	5049391	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	17	5049390	5049391	-	A	INS	USP6	ENST00000250066	human	ensembl	74_37	+1	known	frame_shift_ins	c.2240_2241	p.Q750fs	1.000:0.999	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	pfam_Peptidase_C19/C67,pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom,pfscan_Peptidase_C19/C67	-	no_errors	USP6	HGNC	ENSG00000129204				165	0	0	111	43	27.9221
RNF43	0	genome.wustl.edu	37	17	56435161	56435161	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	17	56435161	56435161	C	-	DEL	RNF43	ENST00000407977	human	ensembl	74_37	-1	known	frame_shift_del	c.1976	p.G659fs	0.900	NULL	pfam_Znf_C3HC4_RING-type,superfamily_PAS,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF43	HGNC	ENSG00000108375				330	0	0	145	73	33.4862
PRR11	0	genome.wustl.edu	37	17	57247171	57247171	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	17	57247171	57247171	A	-	DEL	PRR11	ENST00000262293	human	ensembl	74_37	+1	known	frame_shift_del	c.58	p.E23fs	0.749	NULL	NULL	-	no_errors	PRR11	HGNC	ENSG00000068489				126	0	0	57	23	28.75
RPL12P38	0	genome.wustl.edu	37	17	58512419	58512419	+	RNA	DEL	A	A	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	17	58512419	58512419	A	-	DEL	RPL12P38	ENST00000588627	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.998	-	-	-	no_errors	RPL12P38	HGNC	ENSG00000213228				25	0	0	13	6	31.5789
AXIN2	0	genome.wustl.edu	37	17	63532584	63532585	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	17	63532584	63532585	-	C	INS	AXIN2	ENST00000307078	human	ensembl	74_37	-1	known	frame_shift_ins	c.1995_1994	p.N666fs	0.125:0.436	NULL	pfam_DIX,pfam_RGS_dom,pfam_Axin_b-cat-bd,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal_superfam,smart_DIX,pfscan_DIX,pfscan_Regulat_G_prot_signal_superfam,prints_RGS_dom	-	no_errors	AXIN2	HGNC	ENSG00000168646				138	0	0	56	16	22.2222
ABCA6	0	genome.wustl.edu	37	17	67125767	67125767	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	17	67125767	67125767	A	-	DEL	ABCA6	ENST00000284425	human	ensembl	74_37	-1	known	frame_shift_del	c.917	p.L306fs	1.000	NULL	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA6	HGNC	ENSG00000154262				145	0	0	105	22	17.3228
PHF23	0	genome.wustl.edu	37	17	7139443	7139443	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	17	7139443	7139443	C	-	DEL	PHF23	ENST00000320316	human	ensembl	74_37	-1	known	frame_shift_del	c.803	p.G268fs	0.836	NULL	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD	-	no_errors	PHF23	HGNC	ENSG00000040633				283	0	0	167	51	23.3945
KIAA0195	0	genome.wustl.edu	37	17	73491063	73491063	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	17	73491063	73491063	C	-	DEL	KIAA0195	ENST00000314256	human	ensembl	74_37	+1	known	frame_shift_del	c.2676	p.S895fs	0.999	NULL	pfam_ATPase_P-typ_cation-transptr_C	-	no_errors	KIAA0195	HGNC	ENSG00000177728				195	0	0	127	14	9.92908
GALK1	0	genome.wustl.edu	37	17	73759466	73759466	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	17	73759466	73759466	C	-	DEL	GALK1	ENST00000437911	human	ensembl	74_37	-1	known	frame_shift_del	c.500	p.G167fs	1.000	pfam_GHMP_kinase_N_dom,superfamily_Ribosomal_S5_D2-typ_fold,pirsf_Galactokinase,prints_Mevalonate/galactokinase,prints_Galactokinase,prints_Galkinase,tigrfam_Galactokinase	pfam_GalKase_gal-bd,pfam_GHMP_kinase_C_dom,pfam_GHMP_kinase_N_dom,superfamily_Ribosomal_S5_D2-typ_fold,pirsf_Galactokinase,prints_Mevalonate/galactokinase,prints_Galactokinase,prints_Galkinase,tigrfam_Galactokinase	-	no_errors	GALK1	HGNC	ENSG00000108479				47	0	0	25	4	13.7931
UNK	0	genome.wustl.edu	37	17	73780852	73780852	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	17	73780852	73780852	G	-	DEL	UNK	ENST00000293218	human	ensembl	74_37	+1	known	frame_shift_del	c.119	p.V42fs	1.000	NULL	pfam_Znf_CCCH,smart_Znf_CCCH	-	no_errors	UNK	HGNC	ENSG00000132478				62	0	0	36	7	16.2791
CARD14	0	genome.wustl.edu	37	17	78172264	78172264	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	17	78172264	78172264	G	-	DEL	CARD14	ENST00000344227	human	ensembl	74_37	+1	known	frame_shift_del	c.1725	p.D577fs	1.000	pfscan_PDZ	pfam_CARD,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,superfamily_PDZ,pfscan_CARD,pfscan_PDZ,pfscan_Guanylate_kin-like	-	no_errors	CARD14	HGNC	ENSG00000141527				168	0	0	80	25	23.8095
TSPAN10	0	genome.wustl.edu	37	17	79612317	79612317	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	17	79612317	79612317	G	-	DEL	TSPAN10	ENST00000328585	human	ensembl	74_37	+1	known	frame_shift_del	c.336	p.116fs	0.002	pfam_Tetraspanin/Peripherin	pfam_Tetraspanin/Peripherin,superfamily_Tetraspanin_EC2,prints_Tetraspanin	-	no_errors	TSPAN10	HGNC	ENSG00000182612				75	0	0	53	13	19.697
LDLRAD4	0	genome.wustl.edu	37	18	13612766	13612766	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	18	13612766	13612766	A	-	DEL	LDLRAD4	ENST00000587757	human	ensembl	74_37	+1	known	frame_shift_del	c.63	p.A24fs	0.789	NULL	NULL	-	no_errors	LDLRAD4	HGNC	ENSG00000168675				82	0	0	51	16	23.8806
TTC39C	0	genome.wustl.edu	37	18	21660762	21660762	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	18	21660762	21660762	T	-	DEL	TTC39C	ENST00000317571	human	ensembl	74_37	+1	known	frame_shift_del	c.674	p.H227fs	1.000	pfam_OMP_IML2_mit/TPR_39	pfam_OMP_IML2_mit/TPR_39,pfam_Cohesin_loading_factor	-	no_errors	TTC39C	HGNC	ENSG00000168234				131	0	0	74	32	30.1887
DSG3	0	genome.wustl.edu	37	18	29044269	29044269	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	18	29044269	29044269	A	-	DEL	DSG3	ENST00000257189	human	ensembl	74_37	+1	known	frame_shift_del	c.1195	p.K400fs	0.030	superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin,prints_Desmoglein,prints_Desmosomal_cadherin	-	no_errors	DSG3	HGNC	ENSG00000134757				191	0	0	86	35	28.9256
EMILIN2	0	genome.wustl.edu	37	18	2913316	2913316	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	18	2913316	2913316	G	-	DEL	EMILIN2	ENST00000254528	human	ensembl	74_37	+1	known	frame_shift_del	c.3076	p.G1027fs	1.000	pfam_C1q,superfamily_Tumour_necrosis_fac-like_dom,smart_C1q,pfscan_C1q	pfam_EMI_domain,pfam_C1q,superfamily_Tumour_necrosis_fac-like_dom,smart_C1q,pfscan_C1q,pfscan_EMI_domain	-	no_errors	EMILIN2	HGNC	ENSG00000132205				142	0	0	75	10	11.7647
LPIN2	0	genome.wustl.edu	37	18	2920395	2920395	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	18	2920395	2920395	G	-	DEL	LPIN2	ENST00000261596	human	ensembl	74_37	-1	known	frame_shift_del	c.2587	p.L863fs	0.999	NULL	pfam_LNS2,pfam_Lipin_N,superfamily_HAD-like_dom,smart_LNS2	-	no_errors	LPIN2	HGNC	ENSG00000101577				127	0	0	69	15	17.8571
ENSG00000263606	0	genome.wustl.edu	37	18	2946534	2946534	+	RNA	DEL	T	T	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	18	2946534	2946534	T	-	DEL	ENSG00000263606	ENST00000581139	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.978	-	-	-	no_errors	RP11-737O24.3	Clone_based_vega_gene	ENSG00000263606				30	0	0	15	7	31.8182
KLHL14	0	genome.wustl.edu	37	18	30349862	30349862	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	18	30349862	30349862	G	-	DEL	KLHL14	ENST00000359358	human	ensembl	74_37	-1	known	frame_shift_del	c.693	p.V232fs	0.982	pfam_BACK,smart_BACK,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL14	HGNC	ENSG00000197705				85	0	0	47	17	26.5625
FHOD3	0	genome.wustl.edu	37	18	34205516	34205516	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	18	34205516	34205516	C	-	DEL	FHOD3	ENST00000257209	human	ensembl	74_37	+1	known	frame_shift_del	c.1000	p.S336fs	0.999	superfamily_ARM-type_fold	pfam_FH2_Formin,superfamily_ARM-type_fold,smart_FH2_Formin	-	no_errors	FHOD3	HGNC	ENSG00000134775				131	0	0	66	20	23.2558
WDR7	0	genome.wustl.edu	37	18	54358511	54358512	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	18	54358511	54358512	-	T	INS	WDR7	ENST00000254442	human	ensembl	74_37	+1	known	frame_shift_ins	c.782_783	p.G262fs	1.000:0.277	superfamily_Quinonprotein_ADH-like_supfam	pfam_WD40_repeat,superfamily_Quinonprotein_ADH-like_supfam,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR7	HGNC	ENSG00000091157				278	0	0	170	45	20.9302
ATP8B1	0	genome.wustl.edu	37	18	55365039	55365040	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	18	55365039	55365040	-	T	INS	ATP8B1	ENST00000283684	human	ensembl	74_37	-1	known	frame_shift_ins	c.615_614	p.N205fs	1.000:1.000	pfam_ATPase_P-typ_transduc_dom_A,tigrfam_ATPase_P-typ_Plipid-transp	pfam_ATPase_P-typ_transduc_dom_A,pfam_HAD-like_dom,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Plipid-transp,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP8B1	HGNC	ENSG00000081923				77	0	0	45	14	23.7288
NEDD4L	0	genome.wustl.edu	37	18	55990515	55990515	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	18	55990515	55990515	A	-	DEL	NEDD4L	ENST00000400345	human	ensembl	74_37	+1	known	frame_shift_del	c.462	p.N156fs	0.010	superfamily_C2_dom	pfam_HECT,pfam_WW_dom,pfam_C2_dom,superfamily_HECT,superfamily_C2_dom,superfamily_WW_dom,smart_C2_dom,smart_WW_dom,smart_HECT,pfscan_HECT,pfscan_C2_dom,pfscan_WW_dom,prints_C2_dom	-	no_errors	NEDD4L	HGNC	ENSG00000049759				28	0	0	12	7	36.8421
PHLPP1	0	genome.wustl.edu	37	18	60506242	60506242	+	RNA	DEL	T	T	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	18	60506242	60506242	T	-	DEL	PHLPP1	ENST00000588953	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	PHLPP1	HGNC	ENSG00000081913				42	0	0	18	9	33.3333
SERPINB12	0	genome.wustl.edu	37	18	61228375	61228376	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	18	61228375	61228376	-	A	INS	SERPINB12	ENST00000269491	human	ensembl	74_37	+1	known	frame_shift_ins	c.442_443	p.N150fs	0.524:0.009	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	-	no_errors	SERPINB12	HGNC	ENSG00000166634				219	1	0.454545	143	35	19.6629
SERPINB10	0	genome.wustl.edu	37	18	61584739	61584739	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	18	61584739	61584739	A	-	DEL	SERPINB10	ENST00000238508	human	ensembl	74_37	+1	known	frame_shift_del	c.218	p.R76fs	0.998	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	-	no_errors	SERPINB10	HGNC	ENSG00000242550				21	0	0	10	7	41.1765
TSHZ1	0	genome.wustl.edu	37	18	72998443	72998443	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	18	72998443	72998443	C	-	DEL	TSHZ1	ENST00000580243	human	ensembl	74_37	+1	known	frame_shift_del	c.1081	p.C363fs	0.898	NULL	superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	TSHZ1	HGNC	ENSG00000179981				150	1	0.662252	96	14	12.7273
ANKRD12	0	genome.wustl.edu	37	18	9256062	9256062	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	18	9256062	9256062	A	-	DEL	ANKRD12	ENST00000262126	human	ensembl	74_37	+1	known	frame_shift_del	c.2797	p.N935fs	0.997	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	ANKRD12	HGNC	ENSG00000101745				18	0	0	13	5	27.7778
ILF3	0	genome.wustl.edu	37	19	10794194	10794195	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	19	10794194	10794195	-	G	INS	ILF3	ENST00000449870	human	ensembl	74_37	+1	known	frame_shift_ins	c.1839_1840	p.P615fs	0.625:0.723	NULL	pfam_DZF,pfam_dsRNA-bd_dom,smart_DZF,smart_dsRNA-bd_dom,pfscan_dsRNA-bd_dom	-	no_errors	ILF3	HGNC	ENSG00000129351				183	0	0	114	27	19.1489
DAZAP1	0	genome.wustl.edu	37	19	1430254	1430254	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	19	1430254	1430254	C	-	DEL	DAZAP1	ENST00000233078	human	ensembl	74_37	+1	known	frame_shift_del	c.764	p.P257fs	0.998	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	DAZAP1	HGNC	ENSG00000071626				62	0	0	37	9	19.5652
ANO8	0	genome.wustl.edu	37	19	17435828	17435828	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	19	17435828	17435828	G	-	DEL	ANO8	ENST00000159087	human	ensembl	74_37	-1	known	frame_shift_del	c.3029	p.P1010fs	0.419	NULL	pfam_Anoctamin	-	no_errors	ANO8	HGNC	ENSG00000074855				276	0	0	150	38	20.2128
CRTC1	0	genome.wustl.edu	37	19	18887992	18887993	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	19	18887992	18887993	-	C	INS	CRTC1	ENST00000338797	human	ensembl	74_37	+1	known	frame_shift_ins	c.1753_1754	p.S588fs	1.000:1.000	NULL	NULL	-	no_errors	CRTC1	HGNC	ENSG00000105662				159	1	0.625	92	29	23.9669
ZNF43	0	genome.wustl.edu	37	19	21992086	21992087	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	19	21992086	21992087	-	T	INS	ZNF43	ENST00000354959	human	ensembl	74_37	-1	known	frame_shift_ins	c.753_752	p.N251fs	0.967:0.932	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF43	HGNC	ENSG00000198521				130	1	0.763359	90	20	18.1818
NFKBID	0	genome.wustl.edu	37	19	36388622	36388623	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	19	36388622	36388623	-	T	INS	NFKBID	ENST00000352614	human	ensembl	74_37	-1	known	frame_shift_ins	c.393_392	p.N131fs	0.006:0.004	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	NFKBID	HGNC	ENSG00000167604				109	0	0	76	24	24
DYRK1B	0	genome.wustl.edu	37	19	40320999	40320999	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	19	40320999	40320999	G	-	DEL	DYRK1B	ENST00000601972	human	ensembl	74_37	-1	putative	frame_shift_del	c.388	p.H130fs	0.002	NULL	superfamily_Kinase-like_dom	-	no_errors	DYRK1B	HGNC	ENSG00000105204				95	0	0	58	21	26.5823
SERTAD1	0	genome.wustl.edu	37	19	40929341	40929341	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	19	40929341	40929341	G	-	DEL	SERTAD1	ENST00000357949	human	ensembl	74_37	-1	known	frame_shift_del	c.113	p.P38fs	0.018	pfscan_SERTA	pfam_SERTA,pfscan_SERTA	-	no_errors	SERTAD1	HGNC	ENSG00000197019				103	0	0	64	15	18.9873
SNRPA	0	genome.wustl.edu	37	19	41265481	41265481	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	19	41265481	41265481	C	-	DEL	SNRPA	ENST00000243563	human	ensembl	74_37	+1	known	frame_shift_del	c.392	p.V133fs	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	SNRPA	HGNC	ENSG00000077312				96	0	0	66	14	17.5
RTN2	0	genome.wustl.edu	37	19	45996513	45996513	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	19	45996513	45996513	G	-	DEL	RTN2	ENST00000245923	human	ensembl	74_37	-1	known	frame_shift_del	c.938	p.P313fs	0.005	NULL	pfam_Reticulon,pfscan_Reticulon	-	no_errors	RTN2	HGNC	ENSG00000125744				311	0	0	188	26	12.1495
SIX5	0	genome.wustl.edu	37	19	46269107	46269107	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	19	46269107	46269107	G	-	DEL	SIX5	ENST00000317578	human	ensembl	74_37	-1	known	frame_shift_del	c.1872	p.A625fs	0.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	-	no_errors	SIX5	HGNC	ENSG00000177045				44	0	0	15	8	34.7826
TEAD2	0	genome.wustl.edu	37	19	49850473	49850473	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	19	49850473	49850473	G	-	DEL	TEAD2	ENST00000311227	human	ensembl	74_37	-1	known	frame_shift_del	c.883	p.H295fs	0.961	pfam_TEA/ATTS,pirsf_TEF	pfam_TEA/ATTS,smart_TEA/ATTS,pirsf_TEF,pfscan_TEA/ATTS,prints_TEA/ATTS	-	no_errors	TEAD2	HGNC	ENSG00000074219				531	0	0	296	86	22.5131
SCAF1	0	genome.wustl.edu	37	19	50155693	50155694	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	19	50155693	50155694	-	G	INS	SCAF1	ENST00000360565	human	ensembl	74_37	+1	known	frame_shift_ins	c.2047_2048	p.A685fs	0.998:0.997	NULL	NULL	-	no_errors	SCAF1	HGNC	ENSG00000126461				28	0	0	13	5	27.7778
ENSG00000267896	0	genome.wustl.edu	37	19	50363639	50363639	+	RNA	DEL	G	G	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	19	50363639	50363639	G	-	DEL	ENSG00000267896	ENST00000596624	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	AC018766.4	Clone_based_vega_gene	ENSG00000267896				15	0	0	6	3	33.3333
NLRP12	0	genome.wustl.edu	37	19	54310804	54310804	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	19	54310804	54310804	C	-	DEL	NLRP12	ENST00000324134	human	ensembl	74_37	-1	known	frame_shift_del	c.2188	p.V730fs	0.996	smart_Leu-rich_rpt_RNase_inh_sub-typ	pfam_DAPIN,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP12	HGNC	ENSG00000142405				75	0	0	30	17	36.1702
DNAAF3	0	genome.wustl.edu	37	19	55672058	55672059	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	19	55672058	55672059	-	C	INS	DNAAF3	ENST00000527223	human	ensembl	74_37	-1	known	frame_shift_ins	c.1202_1201	p.D401fs	0.001:0.002	NULL	NULL	-	no_errors	DNAAF3	HGNC	ENSG00000167646				281	1	0.35461	168	32	16
BRSK1	0	genome.wustl.edu	37	19	55815036	55815036	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	19	55815036	55815036	C	-	DEL	BRSK1	ENST00000590333	human	ensembl	74_37	+1	known	frame_shift_del	c.1176	p.R395fs	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Prot_kinase_dom	-	no_errors	BRSK1	HGNC	ENSG00000160469				160	1	0.621118	98	40	28.9855
ZNF749	0	genome.wustl.edu	37	19	57955159	57955160	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	19	57955159	57955160	-	A	INS	ZNF749	ENST00000334181	human	ensembl	74_37	+1	known	frame_shift_ins	c.643_644	p.T217fs	0.100:0.073	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF749	HGNC	ENSG00000186230				97	0	0	48	18	27.2727
BSG	0	genome.wustl.edu	37	19	579603	579603	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	19	579603	579603	G	-	DEL	BSG	ENST00000333511	human	ensembl	74_37	+1	known	frame_shift_del	c.519	p.G175fs	0.001	pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	BSG	HGNC	ENSG00000172270				158	0	0	80	6	6.97674
CAMSAP3	0	genome.wustl.edu	37	19	7675769	7675769	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	19	7675769	7675769	C	-	DEL	CAMSAP3	ENST00000446248	human	ensembl	74_37	+1	known	frame_shift_del	c.1082	p.R363fs	1.000	NULL	pfam_CKK_domain,pfam_CAMSAP_CH,pfam_CH-domain,superfamily_PRC_barrel-like,superfamily_CH-domain	-	no_errors	CAMSAP3	HGNC	ENSG00000076826				141	0	0	93	11	10.5769
FBN3	0	genome.wustl.edu	37	19	8162273	8162273	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	19	8162273	8162273	G	-	DEL	FBN3	ENST00000270509	human	ensembl	74_37	-1	known	frame_shift_del	c.5187	p.A1730fs	0.003	pfam_EGF-like_Ca-bd_dom,superfamily_TB_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pirsf_FBN,pfscan_EG-like_dom	pfam_EGF-like_Ca-bd_dom,pfam_TB_dom,pfam_EG-like_dom,superfamily_TB_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pirsf_FBN,pfscan_EG-like_dom	-	no_errors	FBN3	HGNC	ENSG00000142449				44	0	0	26	4	13.3333
OR7E24	0	genome.wustl.edu	37	19	9362217	9362217	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	19	9362217	9362217	T	-	DEL	OR7E24	ENST00000456448	human	ensembl	74_37	+1	known	frame_shift_del	c.498	p.F168fs	0.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR7E24	HGNC	ENSG00000237521				102	0	0	55	20	26.6667
MFSD9	0	genome.wustl.edu	37	2	103334978	103334978	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	103334978	103334978	G	-	DEL	MFSD9	ENST00000258436	human	ensembl	74_37	-1	known	frame_shift_del	c.1326	p.S443fs	0.000	superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,prints_Tet-R_TetA/multi-R_MdtG	-	no_errors	MFSD9	HGNC	ENSG00000135953				128	0	0	71	12	14.4578
RGPD3	0	genome.wustl.edu	37	2	107041513	107041513	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	107041513	107041513	A	-	DEL	RGPD3	ENST00000304514	human	ensembl	74_37	-1	known	frame_shift_del	c.2910	p.F970fs	0.984	NULL	pfam_Ran_bind_dom,pfam_GRIP,pfam_TPR_1,pfam_TPR_2,smart_TPR_repeat,smart_Ran_bind_dom,smart_GRIP,pfscan_GRIP,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_Ran_bind_dom	-	no_errors	RGPD3	HGNC	ENSG00000153165				589	0	0	408	44	9.73451
NPHP1	0	genome.wustl.edu	37	2	110926098	110926098	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	110926098	110926098	T	-	DEL	NPHP1	ENST00000316534	human	ensembl	74_37	-1	known	frame_shift_del	c.555	p.K185fs	0.398	pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	NPHP1	HGNC	ENSG00000144061				236	0	0	177	32	15.311
ANAPC1	0	genome.wustl.edu	37	2	112636490	112636492	+	In_Frame_Del	DEL	TCA	TCA	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	TCA	TCA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	112636490	112636492	TCA	-	DEL	ANAPC1	ENST00000341068	human	ensembl	74_37	-1	known	in_frame_del	c.272_270	p.D90in_frame_del	1.000:1.000:0.996	NULL	NULL	-	no_errors	ANAPC1	HGNC	ENSG00000153107				326	0	0	206	36	14.876
ROCK2	0	genome.wustl.edu	37	2	11355500	11355500	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	11355500	11355500	T	-	DEL	ROCK2	ENST00000315872	human	ensembl	74_37	-1	known	frame_shift_del	c.1636	p.R546fs	1.000	pirsf_Rho-assoc_coiled-coil_kin	pfam_Prot_kinase_dom,pfam_Rho-bd_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pleckstrin_homology,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_tRNA-bd_arm,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,smart_Pleckstrin_homology,smart_Prot_Kinase_C-like_PE/DAG-bd,pirsf_Rho-assoc_coiled-coil_kin,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_dom	-	no_errors	ROCK2	HGNC	ENSG00000134318				64	0	0	49	7	12.5
PTPN4	0	genome.wustl.edu	37	2	120677773	120677773	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	120677773	120677773	T	-	DEL	PTPN4	ENST00000263708	human	ensembl	74_37	+1	known	frame_shift_del	c.957	p.F321fs	1.000	pirsf_Tyr_Pase_non-rcpt_typ-3/4	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_FERM_PH-like_C,pfam_FERM_central,pfam_FERM_N,pfam_PDZ,pfam_FERM-adjacent,superfamily_FERM_central,superfamily_PDZ,smart_Band_41_domain,smart_PDZ,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pirsf_Tyr_Pase_non-rcpt_typ-3/4,pfscan_FERM_domain,pfscan_PDZ,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt,prints_Band_41_fam,prints_Ez/rad/moesin_like	-	no_errors	PTPN4	HGNC	ENSG00000088179				288	0	0	161	53	24.7664
GPR17	0	genome.wustl.edu	37	2	128409237	128409237	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	128409237	128409237	A	-	DEL	GPR17	ENST00000272644	human	ensembl	74_37	+1	known	frame_shift_del	c.1012	p.N338fs	0.061	NULL	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_Protea_act_rcpt	-	no_errors	GPR17	HGNC	ENSG00000144230				226	0	0	132	33	20
ACVR2A	0	genome.wustl.edu	37	2	148657041	148657041	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	148657041	148657041	A	-	DEL	ACVR2A	ENST00000241416	human	ensembl	74_37	+1	known	frame_shift_del	c.278	p.D96fs	1.000	pfam_Activin_rcpt,prints_TGFB_receptor	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Activin_rcpt,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_TGFB_receptor	-	no_errors	ACVR2A	HGNC	ENSG00000121989				226	0	0	98	45	31.4685
ARL5A	0	genome.wustl.edu	37	2	152684705	152684705	+	RNA	DEL	C	C	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	152684705	152684705	C	-	DEL	ARL5A	ENST00000487723	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.920	-	-	-	no_errors	ARL5A	HGNC	ENSG00000162980				35	0	0	28	5	15.1515
TANC1	0	genome.wustl.edu	37	2	159954333	159954334	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	159954333	159954334	-	A	INS	TANC1	ENST00000263635	human	ensembl	74_37	+1	known	frame_shift_ins	c.246_247	p.S84fs	1.000:1.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,superfamily_P-loop_NTPase,smart_Ankyrin_rpt,smart_TPR_repeat,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_TPR_repeat,pfscan_TPR-contain_dom,prints_Ankyrin_rpt	-	no_errors	TANC1	HGNC	ENSG00000115183				298	0	0	184	48	20.6897
SLC4A10	0	genome.wustl.edu	37	2	162760516	162760516	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	162760516	162760516	T	-	DEL	SLC4A10	ENST00000446997	human	ensembl	74_37	+1	known	frame_shift_del	c.1445	p.F483fs	1.000	pfam_HCO3_transpt_C,tigrfam_HCO3_transpt_euk	pfam_HCO3_transpt_C,pfam_Band3_cytoplasmic_dom,superfamily_PTrfase/Anion_transptr,prints_HCO3_transpt_euk,prints_Na/HCO3_transpt,tigrfam_HCO3_transpt_euk	-	no_errors	SLC4A10	HGNC	ENSG00000144290				14	0	0	6	3	33.3333
SCN1A	0	genome.wustl.edu	37	2	166847923	166847925	+	In_Frame_Del	DEL	AAG	AAG	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	AAG	AAG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	166847923	166847925	AAG	-	DEL	SCN1A	ENST00000303395	human	ensembl	74_37	-1	known	in_frame_del	c.5862_5860	p.L1954in_frame_del	0.978:0.986:1.000	NULL	pfam_Ion_trans_dom,pfam_DUF3451,pfam_Na_trans_assoc,pfam_PKD1_2_channel,prints_Na_channel_a1su,prints_Na_channel_asu,prints_PKD_2	-	no_errors	SCN1A	HGNC	ENSG00000144285				125	0	0	53	15	22.0588
DHRS9	0	genome.wustl.edu	37	2	169948388	169948389	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	169948388	169948389	-	A	INS	DHRS9	ENST00000432060	human	ensembl	74_37	+1	known	frame_shift_ins	c.841_842	p.L284fs	0.100:0.158	NULL	pfam_DH_sc/Rdtase_SDR,prints_Glc/ribitol_DH,prints_DH_sc/Rdtase_SDR	-	no_errors	DHRS9	HGNC	ENSG00000073737				114	0	0	51	22	30.137
CIR1	0	genome.wustl.edu	37	2	175213713	175213713	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	175213713	175213713	T	-	DEL	CIR1	ENST00000342016	human	ensembl	74_37	-1	known	frame_shift_del	c.865	p.I289fs	0.130	NULL	pfam_CIR_N_dom,superfamily_Znf_CCHC	-	no_errors	CIR1	HGNC	ENSG00000138433				170	0	0	86	32	27.1186
HOXD8	0	genome.wustl.edu	37	2	176995417	176995417	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	176995417	176995417	C	-	DEL	HOXD8	ENST00000313173	human	ensembl	74_37	+1	known	frame_shift_del	c.323	p.P110fs	1.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,prints_Homeobox_metazoa,pfscan_Homeobox_dom	-	no_errors	HOXD8	HGNC	ENSG00000175879				136	1	0.729927	71	22	23.6559
ENSG00000271011	0	genome.wustl.edu	37	2	179442293	179442293	+	RNA	DEL	A	A	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	179442293	179442293	A	-	DEL	ENSG00000271011	ENST00000604215	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.038	-	-	-	no_errors	RP11-171I2.5	Clone_based_vega_gene	ENSG00000271011				45	0	0	15	9	37.5
TTN-AS1	0	genome.wustl.edu	37	2	179479100	179479100	+	RNA	DEL	A	A	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	179479100	179479100	A	-	DEL	TTN-AS1	ENST00000456053	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.004	-	-	-	no_errors	TTN-AS1	HGNC	ENSG00000237298				100	0	0	56	11	16.4179
TTN	0	genome.wustl.edu	37	2	179529600	179529600	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	179529600	179529600	T	-	DEL	TTN	ENST00000589042	human	ensembl	74_37	-1	putative	frame_shift_del	c.36097	p.R12033fs	0.000	superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_PPAK_motif,pfam_Titin_Z,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,superfamily_ARM-type_fold,superfamily_P-loop_NTPase,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				43	0	0	26	11	29.7297
MYT1L	0	genome.wustl.edu	37	2	1926367	1926367	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	1926367	1926367	G	-	DEL	MYT1L	ENST00000399161	human	ensembl	74_37	-1	known	frame_shift_del	c.1174	p.R392fs	0.234	NULL	pfam_Myelin_TF,pfam_Znf_C2HC	-	no_errors	MYT1L	HGNC	ENSG00000186487				85	0	0	49	8	14.0351
ANKRD44	0	genome.wustl.edu	37	2	197943349	197943349	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	197943349	197943349	A	-	DEL	ANKRD44	ENST00000409153	human	ensembl	74_37	-1	known	frame_shift_del	c.1728	p.P577fs	0.002	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	ANKRD44	HGNC	ENSG00000065413				21	0	0	3	2	40
NBEAL1	0	genome.wustl.edu	37	2	204058623	204058623	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	204058623	204058623	T	-	DEL	NBEAL1	ENST00000449802	human	ensembl	74_37	+1	known	frame_shift_del	c.6940	p.F2315fs	1.000	NULL	pfam_BEACH_dom,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_ConA-like_lec_gl_sf,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	NBEAL1	HGNC	ENSG00000144426				177	0	0	118	29	19.7279
INO80D	0	genome.wustl.edu	37	2	206869434	206869436	+	In_Frame_Del	DEL	AAG	AAG	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	AAG	AAG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	206869434	206869436	AAG	-	DEL	INO80D	ENST00000403263	human	ensembl	74_37	-1	known	in_frame_del	c.2742_2740	p.L914in_frame_del	0.805:1.000:1.000	NULL	NULL	-	no_errors	INO80D	HGNC	ENSG00000114933				86	0	0	33	7	17.5
GCSHP3	0	genome.wustl.edu	37	2	206980715	206980715	+	RNA	DEL	T	T	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	206980715	206980715	T	-	DEL	GCSHP3	ENST00000453039	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.033	-	-	-	no_errors	AC007383.4	Clone_based_vega_gene	ENSG00000231955				13	0	0	8	4	33.3333
CRYGD	0	genome.wustl.edu	37	2	208986447	208986447	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	208986447	208986447	C	-	DEL	CRYGD	ENST00000264376	human	ensembl	74_37	-1	known	frame_shift_del	c.475	p.A159fs	0.200	pfam_Beta/gamma_crystallin,superfamily_G_crystallin-rel,smart_Beta/gamma_crystallin,pfscan_Beta/gamma_crystallin	pfam_Beta/gamma_crystallin,superfamily_G_crystallin-rel,smart_Beta/gamma_crystallin,pfscan_Beta/gamma_crystallin,prints_Beta/gamma_crystallin	-	no_errors	CRYGD	HGNC	ENSG00000118231				135	0	0	58	19	24.6753
SPAG16	0	genome.wustl.edu	37	2	214878730	214878730	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	214878730	214878730	T	-	DEL	SPAG16	ENST00000331683	human	ensembl	74_37	+1	known	frame_shift_del	c.1456	p.P488fs	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	SPAG16	HGNC	ENSG00000144451				297	0	0	167	54	24.4344
CNPPD1	0	genome.wustl.edu	37	2	220037412	220037413	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	220037412	220037413	-	G	INS	CNPPD1	ENST00000360507	human	ensembl	74_37	-1	known	frame_shift_ins	c.1129_1128	p.W376fs	0.891:0.041	NULL	pfam_Cyclin_PHO80-like,superfamily_Cyclin-like	-	no_errors	CNPPD1	HGNC	ENSG00000115649				115	0	0	63	15	19.2308
TRIP12	0	genome.wustl.edu	37	2	230672544	230672544	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	230672544	230672544	A	-	DEL	TRIP12	ENST00000283943	human	ensembl	74_37	-1	known	frame_shift_del	c.2232	p.F744fs	1.000	superfamily_ARM-type_fold	pfam_HECT,superfamily_HECT,superfamily_ARM-type_fold,smart_HECT,pfscan_HECT,pfscan_WWE-dom	-	no_errors	TRIP12	HGNC	ENSG00000153827				72	0	0	34	6	15
UGT1A4	0	genome.wustl.edu	37	2	234627976	234627977	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	234627976	234627977	-	T	INS	UGT1A4	ENST00000373409	human	ensembl	74_37	+1	known	frame_shift_ins	c.510_511	p.W172fs	0.339:0.388	pfam_UDP_glucos_trans	pfam_UDP_glucos_trans,pfam_Glyco_trans_28_C	-	no_errors	UGT1A4	HGNC	ENSG00000244474				432	0	0	271	80	22.792
IQCA1	0	genome.wustl.edu	37	2	237405943	237405943	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	237405943	237405943	G	-	DEL	IQCA1	ENST00000409907	human	ensembl	74_37	-1	known	frame_shift_del	c.199	p.Q67fs	1.000	NULL	pfam_ATPase_AAA_core,superfamily_P-loop_NTPase,pfscan_IQ_motif_EF-hand-BS	-	no_errors	IQCA1	HGNC	ENSG00000132321				59	0	0	29	11	27.5
RBM44	0	genome.wustl.edu	37	2	238725990	238725990	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	238725990	238725990	T	-	DEL	RBM44	ENST00000316997	human	ensembl	74_37	+1	known	frame_shift_del	c.431	p.F146fs	0.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBM44	HGNC	ENSG00000177483				40	0	0	13	11	45.8333
HDAC4	0	genome.wustl.edu	37	2	240002823	240002823	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	240002823	240002823	G	-	DEL	HDAC4	ENST00000345617	human	ensembl	74_37	-1	known	frame_shift_del	c.2703	p.M902fs	1.000	pfam_His_deacetylse_dom,pirsf_Histone_deAcase_II_euk	pfam_His_deacetylse_dom,pfam_Hist_deacetylase_Gln_rich_N,pfam_Arb2_domain,pirsf_Histone_deAcase_II_euk,prints_His_deacetylse	-	no_errors	HDAC4	HGNC	ENSG00000068024				58	0	0	14	10	41.6667
OTOS	0	genome.wustl.edu	37	2	241078631	241078631	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	241078631	241078631	G	-	DEL	OTOS	ENST00000319460	human	ensembl	74_37	-1	known	frame_shift_del	c.226	p.L76fs	1.000	NULL	NULL	-	no_errors	OTOS	HGNC	ENSG00000178602				179	0	0	95	8	7.76699
HDLBP	0	genome.wustl.edu	37	2	242178074	242178075	+	Frame_Shift_Del	DEL	CT	CT	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	CT	CT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	242178074	242178075	CT	-	DEL	HDLBP	ENST00000310931	human	ensembl	74_37	-1	known	frame_shift_del	c.2739_2738	p.E913fs	1.000:1.000	pfam_KH_dom_type_1,smart_KH_dom,pfscan_KH_dom_type_1	pfam_KH_dom_type_1,smart_KH_dom,pfscan_KH_dom_type_1	-	no_errors	HDLBP	HGNC	ENSG00000115677				461	0	0	292	118	28.7805
THAP4	0	genome.wustl.edu	37	2	242573292	242573292	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	242573292	242573292	C	-	DEL	THAP4	ENST00000407315	human	ensembl	74_37	-1	known	frame_shift_del	c.280	p.A94fs	0.000	NULL	pfam_DUF1794,pfam_Znf_C2CH,superfamily_Calycin-like,smart_Znf_C2CH,pfscan_Znf_C2CH	-	no_errors	THAP4	HGNC	ENSG00000176946				309	0	0	163	53	24.537
ZNF513	0	genome.wustl.edu	37	2	27601437	27601437	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	27601437	27601437	G	-	DEL	ZNF513	ENST00000323703	human	ensembl	74_37	-1	known	frame_shift_del	c.696	p.T233fs	0.998	pfscan_Znf_C2H2	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF513	HGNC	ENSG00000163795				126	0	0	87	7	7.44681
SPDYA	0	genome.wustl.edu	37	2	29063182	29063182	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	29063182	29063182	A	-	DEL	SPDYA	ENST00000334056	human	ensembl	74_37	+1	known	frame_shift_del	c.697	p.R235fs	1.000	NULL	pfam_Cell_cycle_regulatory_Spy1	-	no_errors	SPDYA	HGNC	ENSG00000163806				94	0	0	46	22	32.3529
C2orf71	0	genome.wustl.edu	37	2	29294162	29294162	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	29294162	29294162	G	-	DEL	C2orf71	ENST00000331664	human	ensembl	74_37	-1	known	frame_shift_del	c.2966	p.P989fs	0.000	NULL	NULL	-	no_errors	C2orf71	HGNC	ENSG00000179270				159	0	0	72	26	26.5306
FAM98A	0	genome.wustl.edu	37	2	33809925	33809925	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	33809925	33809925	C	-	DEL	FAM98A	ENST00000238823	human	ensembl	74_37	-1	known	frame_shift_del	c.1475	p.G492fs	1.000	NULL	pfam_Uncharacterised_FAM98	-	no_errors	FAM98A	HGNC	ENSG00000119812				406	1	0.2457	228	68	22.973
EML4	0	genome.wustl.edu	37	2	42488302	42488302	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	42488302	42488302	A	-	DEL	EML4	ENST00000318522	human	ensembl	74_37	+1	known	frame_shift_del	c.380	p.E130fs	1.000	NULL	pfam_HELP,pfam_WD40_repeat,superfamily_Quinonprotein_ADH-like_supfam,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	EML4	HGNC	ENSG00000143924				108	0	0	39	14	26.4151
MSH6	0	genome.wustl.edu	37	2	48030640	48030640	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	48030640	48030640	C	-	DEL	MSH6	ENST00000234420	human	ensembl	74_37	+1	known	frame_shift_del	c.3254	p.F1088fs	0.003	pfam_DNA_mismatch_repair_MutS_C,superfamily_P-loop_NTPase,smart_DNA_mismatch_repair_MutS_core,pirsf_DNA_mismatch_repair_Msh6	pfam_DNA_mismatch_repair_MutS_C,pfam_DNA_mismatch_repair_MutS-lik_N,pfam_DNA_mismatch_repair_MutS_core,pfam_PWWP_dom,pfam_DNA_mismatch_repair_MutS_clamp,pfam_DNA_mmatch_repair_MutS_con_dom,superfamily_DNA_mismatch_repair_MutS_core,superfamily_P-loop_NTPase,superfamily_DNA_mismatch_repair_MutS_N,superfamily_DNA_mmatch_repair_MutS_con_dom,smart_PWWP_dom,smart_DNA_mismatch_repair_MutS_core,smart_DNA_mismatch_repair_MutS_C,pirsf_DNA_mismatch_repair_Msh6,pfscan_PWWP_dom	-	no_errors	MSH6	HGNC	ENSG00000116062				129	0	0	89	35	28.2258
MTIF2	0	genome.wustl.edu	37	2	55481808	55481808	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	55481808	55481808	T	-	DEL	MTIF2	ENST00000263629	human	ensembl	74_37	-1	known	frame_shift_del	c.485	p.N162fs	1.000	NULL	pfam_EF_GTP-bd_dom,pfam_TIF_IF2_dom3,pfam_Transl_elong_EFTu/EF1A_2,pfam_MIRO-like,pfam_GTP_binding_domain,pfam_Small_GTPase,pfam_SRP_receptor_beta_su,superfamily_P-loop_NTPase,superfamily_TIF_IF2_dom3,superfamily_Transl_B-barrel,tigrfam_Small_GTP-bd_dom	-	no_errors	MTIF2	HGNC	ENSG00000085760				233	0	0	178	49	21.5859
CCDC88A	0	genome.wustl.edu	37	2	55570930	55570930	+	Splice_Site	DEL	T	T	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	55570930	55570930	T	-	DEL	CCDC88A	ENST00000436346	human	ensembl	74_37	-1	known	splice_site_del	c.1189-2	e12-2	1.000	-	-	-	no_errors	CCDC88A	HGNC	ENSG00000115355				59	0	0	40	9	18.3673
AUP1	0	genome.wustl.edu	37	2	74754443	74754443	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	74754443	74754443	C	-	DEL	AUP1	ENST00000377526	human	ensembl	74_37	-1	known	frame_shift_del	c.1009	p.A337fs	0.986	smart_CUE,pfscan_CUE	pfam_CUE,smart_CUE,pfscan_CUE	-	no_errors	AUP1	HGNC	ENSG00000115307				75	0	0	33	14	29.7872
AUP1	0	genome.wustl.edu	37	2	74755602	74755603	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	74755602	74755603	-	A	INS	AUP1	ENST00000377526	human	ensembl	74_37	-1	known	frame_shift_ins	c.539_538	p.S180fs	1.000:1.000	NULL	pfam_CUE,smart_CUE,pfscan_CUE	-	no_errors	AUP1	HGNC	ENSG00000115307				92	0	0	71	7	8.97436
LRRTM1	0	genome.wustl.edu	37	2	80529785	80529785	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	80529785	80529785	G	-	DEL	LRRTM1	ENST00000295057	human	ensembl	74_37	-1	known	frame_shift_del	c.1160	p.P387fs	0.000	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRTM1	HGNC	ENSG00000162951				66	0	0	39	6	13.3333
GGCX	0	genome.wustl.edu	37	2	85780733	85780733	+	RNA	DEL	T	T	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	85780733	85780733	T	-	DEL	GGCX	ENST00000482662	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.004	-	-	-	no_errors	GGCX	HGNC	ENSG00000115486				36	0	0	18	8	30.7692
RNF103	0	genome.wustl.edu	37	2	86831015	86831015	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	86831015	86831015	T	-	DEL	RNF103	ENST00000237455	human	ensembl	74_37	-1	known	frame_shift_del	c.2009	p.K670fs	1.000	NULL	pfam_Znf_C3HC4_RING-type,superfamily_Thioredoxin-like_fold,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF103	HGNC	ENSG00000239305				236	1	0.421941	126	24	16
FAHD2A	0	genome.wustl.edu	37	2	96078466	96078466	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	96078466	96078466	C	-	DEL	FAHD2A	ENST00000233379	human	ensembl	74_37	+1	known	frame_shift_del	c.836	p.P281fs	0.997	pfam_Fumarylacetoacetase_C,superfamily_Fumarylacetoacetase_C-rel	pfam_Fumarylacetoacetase_C,superfamily_Fumarylacetoacetase_C-rel	-	no_errors	FAHD2A	HGNC	ENSG00000115042				55	0	0	33	7	17.5
NCAPH	0	genome.wustl.edu	37	2	97024802	97024802	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	97024802	97024802	G	-	DEL	NCAPH	ENST00000240423	human	ensembl	74_37	+1	known	frame_shift_del	c.1228	p.D411fs	1.000	pfam_Condensin_barren_su2,pirsf_Condensin_barren_su2	pfam_Condensin_barren_su2,pirsf_Condensin_barren_su2	-	no_errors	NCAPH	HGNC	ENSG00000121152				176	0	0	84	36	30
TMEM131	0	genome.wustl.edu	37	2	98427639	98427639	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	98427639	98427639	T	-	DEL	TMEM131	ENST00000186436	human	ensembl	74_37	-1	known	frame_shift_del	c.1920	p.K640fs	0.983	pfam_DUF3651_TMEM131	pfam_DUF3651_TMEM131	-	no_errors	TMEM131	HGNC	ENSG00000075568				615	1	0.162338	370	110	22.9167
LIPT1	0	genome.wustl.edu	37	2	99778781	99778781	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	2	99778781	99778781	A	-	DEL	LIPT1	ENST00000340066	human	ensembl	74_37	+1	known	frame_shift_del	c.361	p.K123fs	0.994	pfam_BPL_LipA_LipB,tigrfam_LipoylTrfase_LipoateP_Ligase	pfam_BPL_LipA_LipB,tigrfam_LipoylTrfase_LipoateP_Ligase	-	no_errors	LIPT1	HGNC	ENSG00000144182				152	0	0	71	17	19.3182
ESF1	0	genome.wustl.edu	37	20	13698067	13698067	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	20	13698067	13698067	T	-	DEL	ESF1	ENST00000202816	human	ensembl	74_37	-1	known	frame_shift_del	c.2210	p.K737fs	1.000	NULL	pfam_NUC153	-	no_errors	ESF1	HGNC	ENSG00000089048				260	1	0.383142	126	51	28.8136
NDUFAF5	0	genome.wustl.edu	37	20	13789596	13789596	+	RNA	DEL	A	A	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	20	13789596	13789596	A	-	DEL	NDUFAF5	ENST00000464269	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	NDUFAF5	HGNC	ENSG00000101247				68	0	0	42	10	19.2308
DSTN	0	genome.wustl.edu	37	20	17581679	17581680	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	20	17581679	17581680	-	T	INS	DSTN	ENST00000246069	human	ensembl	74_37	+1	known	frame_shift_ins	c.300_301	p.L102fs	1.000:1.000	pfam_Actin-bd_cofilin/tropomyosin,smart_Actin-bd_cofilin/tropomyosin,prints_ADF/Cofilin/Destrin	pfam_Actin-bd_cofilin/tropomyosin,smart_Actin-bd_cofilin/tropomyosin,prints_ADF/Cofilin/Destrin	-	no_errors	DSTN	HGNC	ENSG00000125868				166	0	0	88	17	16.1905
RBBP9	0	genome.wustl.edu	37	20	18476496	18476496	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	20	18476496	18476496	T	-	DEL	RBBP9	ENST00000337227	human	ensembl	74_37	-1	known	frame_shift_del	c.128	p.N43fs	1.000	pfam_DUF1234_Hydrolase	pfam_DUF1234_Hydrolase	-	no_errors	RBBP9	HGNC	ENSG00000089050				130	0	0	59	20	25.3165
CD93	0	genome.wustl.edu	37	20	23066469	23066469	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	20	23066469	23066469	C	-	DEL	CD93	ENST00000246006	human	ensembl	74_37	-1	known	frame_shift_del	c.361	p.E121fs	0.689	pirsf_CD93/CD141,pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	pirsf_CD93/CD141,pfam_EGF-like_Ca-bd_dom,pfam_EG-like_dom,pfam_C-type_lectin,superfamily_C-type_lectin_fold,superfamily_MFS_dom_general_subst_transpt,smart_C-type_lectin,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom,pfscan_C-type_lectin	-	no_errors	CD93	HGNC	ENSG00000125810				26	0	0	19	12	38.7097
HM13	0	genome.wustl.edu	37	20	30142485	30142488	+	RNA	DEL	AAAA	AAAA	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	AAAA	AAAA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	20	30142485	30142488	AAAA	-	DEL	HM13	ENST00000474466	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.172:0.159:0.155:0.142	-	-	-	no_errors	HM13	HGNC	ENSG00000101294				49	0	0	17	11	39.2857
MIR644A	0	genome.wustl.edu	37	20	33054130	33054130	+	RNA	DEL	T	T	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	20	33054130	33054130	T	-	DEL	MIR644A	ENST00000385262	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.030	-	-	-	no_errors	MIR644A	HGNC	ENSG00000207997				41	0	0	21	13	38.2353
ZHX3	0	genome.wustl.edu	37	20	39832962	39832962	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	20	39832962	39832962	T	-	DEL	ZHX3	ENST00000309060	human	ensembl	74_37	-1	known	frame_shift_del	c.595	p.I199fs	1.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeobox_dom,pfscan_Homeobox_dom	-	no_errors	ZHX3	HGNC	ENSG00000174306				215	0	0	109	35	24.3056
SMOX	0	genome.wustl.edu	37	20	4163027	4163028	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	20	4163027	4163028	-	G	INS	SMOX	ENST00000305958	human	ensembl	74_37	+1	known	frame_shift_ins	c.901_902	p.R304fs	0.105:0.064	NULL	pfam_Amino_oxidase,pfam_FAD-dep_OxRdtase,pfam_FAD_bind_dom	-	no_errors	SMOX	HGNC	ENSG00000088826				70	0	0	35	21	37.5
KCNK15	0	genome.wustl.edu	37	20	43379277	43379278	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	20	43379277	43379278	-	C	INS	KCNK15	ENST00000372861	human	ensembl	74_37	+1	known	frame_shift_ins	c.791_792	p.G268fs	0.004:0.417	pirsf_2pore_dom_K_chnl_TASK	pfam_2pore_dom_K_chnl_dom,pirsf_2pore_dom_K_chnl_TASK,prints_TASK5,prints_2pore_dom_K_chnl_TASK,prints_2pore_dom_K_chnl	-	no_errors	KCNK15	HGNC	ENSG00000124249				38	0	0	27	2	6.89655
DNTTIP1	0	genome.wustl.edu	37	20	44433957	44433957	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	20	44433957	44433957	G	-	DEL	DNTTIP1	ENST00000372622	human	ensembl	74_37	+1	known	frame_shift_del	c.675	p.G227fs	1.000	NULL	NULL	-	no_errors	DNTTIP1	HGNC	ENSG00000101457				185	0	0	88	22	20
PCIF1	0	genome.wustl.edu	37	20	44576407	44576409	+	RNA	DEL	GGA	GGA	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	GGA	GGA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	20	44576407	44576409	GGA	-	DEL	PCIF1	ENST00000479348	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.951:0.947:0.952	-	-	-	no_errors	PCIF1	HGNC	ENSG00000100982				64	0	0	37	4	9.7561
MIR296	0	genome.wustl.edu	37	20	57392726	57392726	+	RNA	DEL	G	G	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	20	57392726	57392726	G	-	DEL	MIR296	ENST00000385215	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.994	-	-	-	no_errors	MIR296	HGNC	ENSG00000268649				76	0	0	43	15	25.8621
ZNF831	0	genome.wustl.edu	37	20	57766220	57766220	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	20	57766220	57766220	C	-	DEL	ZNF831	ENST00000371030	human	ensembl	74_37	+1	novel	frame_shift_del	c.146	p.T52fs	0.643	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF831	HGNC	ENSG00000124203				80	0	0	49	11	18.3333
SYCP2	0	genome.wustl.edu	37	20	58467046	58467047	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	20	58467046	58467047	-	T	INS	SYCP2	ENST00000357552	human	ensembl	74_37	-1	known	frame_shift_ins	c.2363_2362	p.M788fs	0.102:0.029	NULL	NULL	-	no_errors	SYCP2	HGNC	ENSG00000196074				98	0	0	44	15	25.4237
CDH26	0	genome.wustl.edu	37	20	58587784	58587784	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	20	58587784	58587784	A	-	DEL	CDH26	ENST00000348616	human	ensembl	74_37	+1	known	frame_shift_del	c.2498	p.*833fs	0.000	NULL	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH26	HGNC	ENSG00000124215				100	0	0	38	32	45.7143
DIDO1	0	genome.wustl.edu	37	20	61512074	61512074	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	20	61512074	61512074	C	-	DEL	DIDO1	ENST00000266070	human	ensembl	74_37	-1	known	frame_shift_del	c.5234	p.G1745fs	0.000	NULL	pfam_TFIIS_cen_dom,pfam_SPOC_C,pfam_Znf_PHD-finger,superfamily_TFIIS_cen_dom,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_TFS2M,pfscan_Znf_PHD-finger	-	no_errors	DIDO1	HGNC	ENSG00000101191				244	0	0	160	41	20.398
SCAF4	0	genome.wustl.edu	37	21	33073336	33073336	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	21	33073336	33073336	G	-	DEL	SCAF4	ENST00000286835	human	ensembl	74_37	-1	known	frame_shift_del	c.749	p.P250fs	0.926	NULL	pfam_RNA_pol_II-bd,pfam_RRM_dom,superfamily_ENTH_VHS,smart_CID_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	SCAF4	HGNC	ENSG00000156304				159	0	0	89	26	22.6087
CLIC6	0	genome.wustl.edu	37	21	36081075	36081076	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	21	36081075	36081076	-	A	INS	CLIC6	ENST00000360731	human	ensembl	74_37	+1	known	frame_shift_ins	c.1742_1743	p.N583fs	0.999:0.438	superfamily_Glutathione-S-Trfase_C-like,prints_Int_Cl_channel,tigrfam_Int_Cl_channel	superfamily_Glutathione-S-Trfase_C-like,superfamily_Thioredoxin-like_fold,prints_Int_Cl_channel,tigrfam_Int_Cl_channel	-	no_errors	CLIC6	HGNC	ENSG00000159212				94	0	0	62	21	25.3012
DOPEY2	0	genome.wustl.edu	37	21	37650357	37650358	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	21	37650357	37650358	-	T	INS	DOPEY2	ENST00000399151	human	ensembl	74_37	+1	known	frame_shift_ins	c.5797_5798	p.P1935fs	0.998:0.996	NULL	pfam_Dopey_N	-	no_errors	DOPEY2	HGNC	ENSG00000142197				216	0	0	123	41	25
TTC3	0	genome.wustl.edu	37	21	38524243	38524243	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	21	38524243	38524243	A	-	DEL	TTC3	ENST00000354749	human	ensembl	74_37	+1	known	frame_shift_del	c.2327	p.E779fs	1.000	NULL	pfam_Znf_C3HC4_RING-type,superfamily_DEATH-like_dom,smart_TPR_repeat,smart_Znf_RING,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_Znf_RING	-	no_errors	TTC3	HGNC	ENSG00000182670				101	0	0	52	24	31.5789
DERL3	0	genome.wustl.edu	37	22	24180552	24180552	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	22	24180552	24180552	C	-	DEL	DERL3	ENST00000318109	human	ensembl	74_37	-1	known	frame_shift_del	c.314	p.G105fs	1.000	pfam_DER1	pfam_DER1	-	no_errors	DERL3	HGNC	ENSG00000099958				41	0	0	12	6	33.3333
MN1	0	genome.wustl.edu	37	22	28196286	28196286	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	22	28196286	28196286	C	-	DEL	MN1	ENST00000302326	human	ensembl	74_37	-1	known	frame_shift_del	c.246	p.L83fs	0.997	NULL	NULL	-	no_errors	MN1	HGNC	ENSG00000169184				81	0	0	47	7	12.963
TRIOBP	0	genome.wustl.edu	37	22	38121772	38121772	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	22	38121772	38121772	C	-	DEL	TRIOBP	ENST00000406386	human	ensembl	74_37	+1	known	frame_shift_del	c.3209	p.R1072fs	1.000	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	TRIOBP	HGNC	ENSG00000100106				174	0	0	108	22	16.9231
CSNK1E	0	genome.wustl.edu	37	22	38699188	38699188	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	22	38699188	38699188	G	-	DEL	CSNK1E	ENST00000359867	human	ensembl	74_37	-1	known	frame_shift_del	c.142	p.Q48fs	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	CSNK1E	HGNC	ENSG00000213923				31	0	0	15	8	34.7826
DDX17	0	genome.wustl.edu	37	22	38897211	38897211	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	22	38897211	38897211	T	-	DEL	DDX17	ENST00000396821	human	ensembl	74_37	-1	known	frame_shift_del	c.362	p.K121fs	1.000	NULL	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX17	HGNC	ENSG00000100201				111	0	0	84	10	10.6383
CSDC2	0	genome.wustl.edu	37	22	41970850	41970850	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	22	41970850	41970850	C	-	DEL	CSDC2	ENST00000306149	human	ensembl	74_37	+1	known	frame_shift_del	c.413	p.H140fs	1.000	NULL	pfam_CSP_DNA-bd,superfamily_NA-bd_OB-fold,smart_Cold_shock_prot	-	no_errors	CSDC2	HGNC	ENSG00000172346				28	0	0	33	3	8.33333
EFCAB6-AS1	0	genome.wustl.edu	37	22	43930759	43930759	+	RNA	DEL	A	A	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	22	43930759	43930759	A	-	DEL	EFCAB6-AS1	ENST00000431327	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.015	-	-	-	no_errors	EFCAB6-AS1	HGNC	ENSG00000223843				188	0	0	118	37	23.871
SAMM50	0	genome.wustl.edu	37	22	44392209	44392209	+	RNA	DEL	T	T	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	22	44392209	44392209	T	-	DEL	SAMM50	ENST00000493621	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SAMM50	HGNC	ENSG00000100347				1057	0	0	713	97	11.9753
MIR1249	0	genome.wustl.edu	37	22	45596846	45596846	+	RNA	DEL	G	G	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	22	45596846	45596846	G	-	DEL	MIR1249	ENST00000408671	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	MIR1249	HGNC	ENSG00000221598				21	0	0	10	4	28.5714
KIAA0930	0	genome.wustl.edu	37	22	45607914	45607914	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	22	45607914	45607914	G	-	DEL	KIAA0930	ENST00000251993	human	ensembl	74_37	-1	known	frame_shift_del	c.154	p.R52fs	0.989	pfam_DUF2045	pfam_DUF2045	-	no_errors	KIAA0930	HGNC	ENSG00000100364				123	0	0	74	11	12.9412
MAPK8IP2	0	genome.wustl.edu	37	22	51044095	51044095	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	22	51044095	51044095	G	-	DEL	MAPK8IP2	ENST00000329492	human	ensembl	74_37	+1	known	frame_shift_del	c.1944	p.E650fs	0.085	pfam_SH3_domain,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	pfam_PTB/PI_dom,pfam_SH3_domain,superfamily_SH3_domain,smart_SH3_domain,smart_PTB/PI_dom,pfscan_PTB/PI_dom,pfscan_SH3_domain	-	no_errors	MAPK8IP2	HGNC	ENSG00000008735				36	0	0	23	5	17.8571
ZBTB11	0	genome.wustl.edu	37	3	101370324	101370325	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	3	101370324	101370325	-	T	INS	ZBTB11	ENST00000312938	human	ensembl	74_37	-1	known	frame_shift_ins	c.2848_2847	p.D949fs	1.000:1.000	NULL	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB11	HGNC	ENSG00000066422				285	1	0.34965	157	56	26.2911
TATDN2	0	genome.wustl.edu	37	3	10291121	10291123	+	In_Frame_Del	DEL	CTC	CTC	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	CTC	CTC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	3	10291121	10291123	CTC	-	DEL	TATDN2	ENST00000287652	human	ensembl	74_37	+1	known	in_frame_del	c.237_239	p.S83in_frame_del	0.706:0.669:0.673	NULL	pfam_TatD_family	-	no_errors	TATDN2	HGNC	ENSG00000157014				424	1	0.235294	219	62	22.0641
MORC1	0	genome.wustl.edu	37	3	108682419	108682419	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	3	108682419	108682419	T	-	DEL	MORC1	ENST00000232603	human	ensembl	74_37	-1	known	frame_shift_del	c.2641	p.I881fs	0.062	NULL	pfam_Znf_CW,superfamily_HATPase_ATP-bd,pfscan_Znf_CW	-	no_errors	MORC1	HGNC	ENSG00000114487				127	0	0	75	21	21.875
ZBTB20	0	genome.wustl.edu	37	3	114058003	114058003	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	3	114058003	114058003	G	-	DEL	ZBTB20	ENST00000474710	human	ensembl	74_37	-1	known	frame_shift_del	c.2075	p.P692fs	0.678	NULL	pfam_BTB_POZ,pfam_Znf_C2H2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB20	HGNC	ENSG00000181722				168	0	0	68	22	24.4444
POLQ	0	genome.wustl.edu	37	3	121208704	121208704	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	3	121208704	121208704	T	-	DEL	POLQ	ENST00000264233	human	ensembl	74_37	-1	known	frame_shift_del	c.3074	p.K1025fs	0.383	NULL	pfam_DNA-dir_DNA_pol_A_palm_dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,superfamily_RNaseH-like_dom,smart_Helicase_ATP-bd,smart_Helicase_C,smart_DNA-dir_DNA_pol_A_palm_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,prints_DNA_polymerase_A	-	no_errors	POLQ	HGNC	ENSG00000051341				244	0	0	153	48	23.8806
SEMA5B	0	genome.wustl.edu	37	3	122629052	122629052	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	3	122629052	122629052	G	-	DEL	SEMA5B	ENST00000451055	human	ensembl	74_37	-1	known	frame_shift_del	c.3556	p.L1186fs	0.996	NULL	pfam_Semap_dom,pfam_Thrombospondin_1_rpt,superfamily_Semap_dom,superfamily_Thrombospondin_1_rpt,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_Thrombospondin_1_rpt,pfscan_Semap_dom,pfscan_Thrombospondin_1_rpt	-	no_errors	SEMA5B	HGNC	ENSG00000082684				128	0	0	87	19	17.9245
PIK3R4	0	genome.wustl.edu	37	3	130454824	130454824	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	3	130454824	130454824	A	-	DEL	PIK3R4	ENST00000356763	human	ensembl	74_37	-1	known	frame_shift_del	c.756	p.F252fs	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_WD40_repeat,pfam_HEAT,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_WD40_repeat,pfscan_HEAT_type_2,pfscan_Prot_kinase_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	PIK3R4	HGNC	ENSG00000196455				210	0	0	89	32	26.4463
ASTE1	0	genome.wustl.edu	37	3	130743303	130743303	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	3	130743303	130743303	T	-	DEL	ASTE1	ENST00000264992	human	ensembl	74_37	-1	known	frame_shift_del	c.848	p.K283fs	0.177	NULL	pfam_XPG_DNA_repair_N	-	no_errors	ASTE1	HGNC	ENSG00000034533				200	0	0	98	37	27.4074
TOPBP1	0	genome.wustl.edu	37	3	133335731	133335731	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	3	133335731	133335731	T	-	DEL	TOPBP1	ENST00000260810	human	ensembl	74_37	-1	known	frame_shift_del	c.3798	p.K1266fs	1.000	pfam_BRCT_dom,superfamily_BRCT_dom,smart_BRCT_dom,pfscan_BRCT_dom	pfam_BRCT_dom,superfamily_BRCT_dom,superfamily_Secretoglobin,smart_BRCT_dom,pfscan_BRCT_dom	-	no_errors	TOPBP1	HGNC	ENSG00000163781				16	0	0	6	5	45.4545
STAG1	0	genome.wustl.edu	37	3	136088059	136088060	+	Frame_Shift_Del	DEL	CT	CT	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	CT	CT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	3	136088059	136088060	CT	-	DEL	STAG1	ENST00000383202	human	ensembl	74_37	-1	known	frame_shift_del	c.2436_2435	p.E812fs	1.000:1.000	NULL	pfam_STAG,superfamily_ARM-type_fold	-	no_errors	STAG1	HGNC	ENSG00000118007				139	0	0	72	20	21.7391
CNTN6	0	genome.wustl.edu	37	3	1371501	1371501	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	3	1371501	1371501	A	-	DEL	CNTN6	ENST00000350110	human	ensembl	74_37	+1	known	frame_shift_del	c.1246	p.K418fs	0.992	pfam_Ig_I-set,smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	CNTN6	HGNC	ENSG00000134115				137	0	0	59	18	23.3766
XRN1	0	genome.wustl.edu	37	3	142142409	142142409	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	3	142142409	142142409	T	-	DEL	XRN1	ENST00000264951	human	ensembl	74_37	-1	known	frame_shift_del	c.703	p.T235fs	0.869	pirsf_5_3_exoribonuclease_1	pfam_Put_53exo,pirsf_5_3_exoribonuclease_1	-	no_errors	XRN1	HGNC	ENSG00000114127				45	0	0	32	13	28.8889
SMC4	0	genome.wustl.edu	37	3	160143940	160143940	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	3	160143940	160143940	A	-	DEL	SMC4	ENST00000344722	human	ensembl	74_37	+1	known	frame_shift_del	c.2557	p.K855fs	0.998	pfam_RecF/RecN/SMC_N,superfamily_P-loop_NTPase,superfamily_Chemotax_Me-accpt_rcpt_lig-bd	pfam_RecF/RecN/SMC_N,pfam_SMC_hinge,superfamily_P-loop_NTPase,superfamily_SMC_hinge,superfamily_Chemotax_Me-accpt_rcpt_lig-bd,superfamily_Prefoldin,smart_SMC_hinge	-	no_errors	SMC4	HGNC	ENSG00000113810				306	0	0	195	63	24.4186
WDR49	0	genome.wustl.edu	37	3	167217955	167217955	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	3	167217955	167217955	G	-	DEL	WDR49	ENST00000308378	human	ensembl	74_37	-1	known	frame_shift_del	c.1961	p.P654fs	0.018	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	WDR49	HGNC	ENSG00000174776				402	0	0	229	73	24.1722
LRRIQ4	0	genome.wustl.edu	37	3	169540249	169540249	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	3	169540249	169540249	C	-	DEL	LRRIQ4	ENST00000340806	human	ensembl	74_37	+1	known	frame_shift_del	c.540	p.Q182fs	1.000	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,pfscan_IQ_motif_EF-hand-BS	-	no_errors	LRRIQ4	HGNC	ENSG00000188306				171	0	0	97	34	25.9542
TBL1XR1	0	genome.wustl.edu	37	3	176769342	176769342	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	3	176769342	176769342	T	-	DEL	TBL1XR1	ENST00000430069	human	ensembl	74_37	-1	known	frame_shift_del	c.377	p.N126fs	1.000	NULL	pfam_WD40_repeat,pfam_LisH_dimerisation_subgr,superfamily_WD40_repeat_dom,smart_LisH_dimerisation,smart_WD40_repeat,pfscan_LisH_dimerisation,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	TBL1XR1	HGNC	ENSG00000177565				203	0	0	140	40	22.2222
CCDC39	0	genome.wustl.edu	37	3	180377245	180377246	+	Frame_Shift_Del	DEL	CA	CA	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	CA	CA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	3	180377245	180377246	CA	-	DEL	CCDC39	ENST00000442201	human	ensembl	74_37	-1	known	frame_shift_del	c.733_732	p.A245fs	1.000:1.000	NULL	superfamily_Prefoldin,superfamily_tRNA-bd_arm	-	no_errors	CCDC39	HGNC	ENSG00000145075				94	0	0	45	18	28.5714
HRG	0	genome.wustl.edu	37	3	186395646	186395646	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	3	186395646	186395646	T	-	DEL	HRG	ENST00000232003	human	ensembl	74_37	+1	known	frame_shift_del	c.1552	p.F519fs	0.979	NULL	pfam_Prot_inh_cystat,smart_Prot_inh_cystat	-	no_errors	HRG	HGNC	ENSG00000113905				202	0	0	111	35	23.9726
PPP1R2	0	genome.wustl.edu	37	3	195245976	195245976	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	3	195245976	195245976	T	-	DEL	PPP1R2	ENST00000328432	human	ensembl	74_37	-1	known	frame_shift_del	c.410	p.K137fs	1.000	pfam_PPI-2	pfam_PPI-2	-	no_errors	PPP1R2	HGNC	ENSG00000184203				124	0	0	71	29	29
SGOL1	0	genome.wustl.edu	37	3	20216050	20216050	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	3	20216050	20216050	T	-	DEL	SGOL1	ENST00000263753	human	ensembl	74_37	-1	known	frame_shift_del	c.973	p.M325fs	0.000	NULL	pfam_Shugoshin_N,pfam_Shugoshin_C	-	no_errors	SGOL1	HGNC	ENSG00000129810				93	0	0	38	13	25.4902
EPM2AIP1	0	genome.wustl.edu	37	3	37034280	37034281	+	Frame_Shift_Del	DEL	CT	CT	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	CT	CT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	3	37034280	37034281	CT	-	DEL	EPM2AIP1	ENST00000322716	human	ensembl	74_37	-1	known	frame_shift_del	c.289_288	p.R96fs	0.020:0.014	NULL	NULL	-	no_errors	EPM2AIP1	HGNC	ENSG00000178567				168	0	0	113	9	7.37705
VILL	0	genome.wustl.edu	37	3	38039624	38039625	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	3	38039624	38039625	-	C	INS	VILL	ENST00000283713	human	ensembl	74_37	+1	known	frame_shift_ins	c.808_809	p.L273fs	0.589:0.638	pfam_Gelsolin_dom,smart_Villin/Gelsolin	pfam_Gelsolin_dom,pfam_Villin_headpiece,superfamily_Villin_headpiece,smart_Villin/Gelsolin,smart_Villin_headpiece,pfscan_Villin_headpiece,prints_Villin/Gelsolin	-	no_errors	VILL	HGNC	ENSG00000136059				43	0	0	27	11	28.9474
SCN10A	0	genome.wustl.edu	37	3	38750970	38750970	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	3	38750970	38750970	T	-	DEL	SCN10A	ENST00000449082	human	ensembl	74_37	-1	known	frame_shift_del	c.4280	p.K1427fs	1.000	NULL	pfam_Ion_trans_dom,pfam_Na_trans_assoc,pfam_PKD1_2_channel,prints_Na_channel_asu,prints_PKD_2	-	no_errors	SCN10A	HGNC	ENSG00000185313				174	0	0	108	32	22.8571
SCN11A	0	genome.wustl.edu	37	3	38949441	38949441	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	3	38949441	38949441	T	-	DEL	SCN11A	ENST00000302328	human	ensembl	74_37	-1	known	frame_shift_del	c.1472	p.K491fs	0.352	NULL	pfam_Ion_trans_dom,pfam_Na_trans_assoc,prints_Na_channel_asu	-	no_errors	SCN11A	HGNC	ENSG00000168356				140	0	0	80	27	25.2336
NKTR	0	genome.wustl.edu	37	3	42679036	42679036	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	3	42679036	42679036	C	-	DEL	NKTR	ENST00000232978	human	ensembl	74_37	+1	known	frame_shift_del	c.1840	p.P616fs	1.000	NULL	pfam_Cyclophilin-like_PPIase_dom,superfamily_Cyclophilin-like_PPIase_dom,pfscan_Cyclophilin-like_PPIase_dom,prints_Cyclophilin-like_PPIase_dom	-	no_errors	NKTR	HGNC	ENSG00000114857				432	1	0.230947	231	70	23.2558
COL7A1	0	genome.wustl.edu	37	3	48612871	48612871	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	3	48612871	48612871	G	-	DEL	COL7A1	ENST00000328333	human	ensembl	74_37	-1	known	frame_shift_del	c.6081	p.P2029fs	0.981	pfam_Collagen	pfam_Collagen,pfam_Fibronectin_type3,pfam_VWF_A,pfam_Prot_inh_Kunz-m,superfamily_Fibronectin_type3,superfamily_Prot_inh_Kunz-m,smart_VWF_A,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_VWF_A,pfscan_Prot_inh_Kunz-m,prints_Prot_inh_Kunz-m	-	no_errors	COL7A1	HGNC	ENSG00000114270				61	0	0	25	9	26.4706
AMT	0	genome.wustl.edu	37	3	49457336	49457336	+	RNA	DEL	A	A	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	3	49457336	49457336	A	-	DEL	AMT	ENST00000480957	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	AMT	HGNC	ENSG00000145020				38	0	0	22	3	12
DOCK3	0	genome.wustl.edu	37	3	51417604	51417604	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	3	51417604	51417604	C	-	DEL	DOCK3	ENST00000266037	human	ensembl	74_37	+1	known	frame_shift_del	c.5549	p.P1852fs	0.115	NULL	pfam_DOCK_C,pfam_SH3_2,superfamily_SH3_domain,superfamily_ARM-type_fold,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	DOCK3	HGNC	ENSG00000088538				132	0	0	50	29	36.7089
STAB1	0	genome.wustl.edu	37	3	52547907	52547908	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	3	52547907	52547908	-	C	INS	STAB1	ENST00000321725	human	ensembl	74_37	+1	known	frame_shift_ins	c.3357_3358	p.R1121fs	0.951:0.999	superfamily_FAS1_domain,smart_FAS1_domain	pfam_FAS1_domain,pfam_Link,superfamily_C-type_lectin_fold,superfamily_FAS1_domain,smart_EG-like_dom,smart_EGF_laminin,smart_FAS1_domain,smart_EGF-like_Ca-bd_dom,smart_Link,pfscan_EG-like_dom,pfscan_FAS1_domain,pfscan_Link	-	no_errors	STAB1	HGNC	ENSG00000010327				549	1	0.181818	341	75	18.0288
IL17RB	0	genome.wustl.edu	37	3	53889347	53889347	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	3	53889347	53889347	A	-	DEL	IL17RB	ENST00000288167	human	ensembl	74_37	+1	known	frame_shift_del	c.508	p.K172fs	0.036	NULL	pfam_SEFIR	-	no_errors	IL17RB	HGNC	ENSG00000056736				19	0	0	16	5	23.8095
DNAH12	0	genome.wustl.edu	37	3	57509313	57509313	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	3	57509313	57509313	T	-	DEL	DNAH12	ENST00000351747	human	ensembl	74_37	-1	known	frame_shift_del	c.276	p.G93fs	1.000	NULL	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH12	HGNC	ENSG00000174844				31	0	0	14	4	22.2222
ENSG00000244513	0	genome.wustl.edu	37	3	69105268	69105268	+	RNA	DEL	T	T	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	3	69105268	69105268	T	-	DEL	ENSG00000244513	ENST00000595925	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	CTD-2013N24.2	Clone_based_vega_gene	ENSG00000244513				90	0	0	41	13	24.0741
EBLN2	0	genome.wustl.edu	37	3	73111542	73111542	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	3	73111542	73111542	A	-	DEL	EBLN2	ENST00000533473	human	ensembl	74_37	+1	known	frame_shift_del	c.310	p.A106fs	0.001	pfam_P40_nucleoprot_BD-vir,superfamily_P40_nucleoprot_BD-vir	pfam_P40_nucleoprot_BD-vir,superfamily_P40_nucleoprot_BD-vir	-	no_errors	EBLN2	HGNC	ENSG00000255423				31	0	0	15	2	11.7647
OR5H1	0	genome.wustl.edu	37	3	97852456	97852456	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	3	97852456	97852456	A	-	DEL	OR5H1	ENST00000354565	human	ensembl	74_37	+1	known	frame_shift_del	c.915	p.K307fs	0.000	NULL	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR5H1	HGNC	ENSG00000231192				105	0	0	49	19	27.9412
TADA3	0	genome.wustl.edu	37	3	9831567	9831567	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	3	9831567	9831567	G	-	DEL	TADA3	ENST00000301964	human	ensembl	74_37	-1	known	frame_shift_del	c.288	p.K97fs	0.002	NULL	pfam_Histone_AcTrfase_su3	-	no_errors	TADA3	HGNC	ENSG00000171148				188	0	0	96	32	25
RRH	0	genome.wustl.edu	37	4	110756541	110756541	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	4	110756541	110756541	T	-	DEL	RRH	ENST00000317735	human	ensembl	74_37	+1	known	frame_shift_del	c.317	p.F108fs	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Peropsin,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Peropsin,prints_GPCR_Rhodpsn	-	no_errors	RRH	HGNC	ENSG00000180245				177	0	0	77	35	31.25
ENPEP	0	genome.wustl.edu	37	4	111482570	111482571	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	4	111482570	111482571	-	T	INS	ENPEP	ENST00000265162	human	ensembl	74_37	+1	known	frame_shift_ins	c.2730_2731	p.A912fs	0.996:1.000	NULL	pfam_Peptidase_M1_N,prints_Peptidase_M1_N	-	no_errors	ENPEP	HGNC	ENSG00000138792				57	0	0	34	10	22.7273
LARP7	0	genome.wustl.edu	37	4	113578483	113578483	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	4	113578483	113578483	A	-	DEL	LARP7	ENST00000324052	human	ensembl	74_37	+1	known	frame_shift_del	c.1749	p.*583fs	1.000	NULL	pfam_RRM_3,pfam_Lupus_La_RNA-bd,pfam_RRM_dom,smart_Lupus_La_RNA-bd,smart_RRM_dom,pfscan_Lupus_La_RNA-bd,pfscan_RRM_dom,prints_Lupus_La	-	no_errors	LARP7	HGNC	ENSG00000174720				26	0	0	11	4	26.6667
KIAA1109	0	genome.wustl.edu	37	4	123140723	123140726	+	Splice_Site	DEL	GTAA	GTAA	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	GTAA	GTAA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	4	123140723	123140726	GTAA	-	DEL	KIAA1109	ENST00000264501	human	ensembl	74_37	+1	known	splice_site_del	c.2475+1_2475+1	e19+1	1.000:1.000:1.000:1.000	-	-	-	no_errors	KIAA1109	HGNC	ENSG00000138688				179	0	0	108	6	5.26316
RNF150	0	genome.wustl.edu	37	4	141832328	141832328	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	4	141832328	141832328	G	-	DEL	RNF150	ENST00000515673	human	ensembl	74_37	-1	known	frame_shift_del	c.1168	p.Q390fs	0.996	NULL	pfam_Protease-assoc_domain,pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF150	HGNC	ENSG00000170153				198	0	0	107	21	16.4062
PPID	0	genome.wustl.edu	37	4	159636518	159636518	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	4	159636518	159636518	T	-	DEL	PPID	ENST00000307720	human	ensembl	74_37	-1	known	frame_shift_del	c.683	p.N228fs	1.000	smart_TPR_repeat	pfam_Cyclophilin-like_PPIase_dom,pfam_TPR_1,superfamily_Cyclophilin-like_PPIase_dom,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_Cyclophilin-like_PPIase_dom,prints_Cyclophilin-like_PPIase_dom	-	no_errors	PPID	HGNC	ENSG00000171497				11	0	0	2	6	75
FNIP2	0	genome.wustl.edu	37	4	159789659	159789660	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	4	159789659	159789660	-	G	INS	FNIP2	ENST00000379346	human	ensembl	74_37	+1	known	frame_shift_ins	c.1940_1941	p.S649fs	0.012:0.003	NULL	NULL	-	no_errors	FNIP2	HGNC	ENSG00000052795				42	0	0	22	5	18.5185
PROM1	0	genome.wustl.edu	37	4	15995680	15995680	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	4	15995680	15995680	T	-	DEL	PROM1	ENST00000447510	human	ensembl	74_37	-1	known	frame_shift_del	c.1697	p.N566fs	0.415	pfam_Prominin	pfam_Prominin	-	no_errors	PROM1	HGNC	ENSG00000007062				214	1	0.465116	120	43	26.3804
RAPGEF2	0	genome.wustl.edu	37	4	160271311	160271311	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	4	160271311	160271311	A	-	DEL	RAPGEF2	ENST00000264431	human	ensembl	74_37	+1	known	frame_shift_del	c.3252	p.I1087fs	1.000	NULL	pfam_RasGRF_CDC25,pfam_Ras-assoc,pfam_Ras-like_Gua-exchang_fac_N,pfam_PDZ,pfam_cNMP-bd_dom,superfamily_Ras_GEF_dom,superfamily_PDZ,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,smart_Ras-like_Gua-exchang_fac_N,smart_PDZ,smart_Ras-assoc,smart_RasGRF_CDC25,pfscan_cNMP-bd_dom,pfscan_PDZ,pfscan_Ras-assoc,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RAPGEF2	HGNC	ENSG00000109756				92	0	0	51	13	20.3125
NCAPG	0	genome.wustl.edu	37	4	17844998	17844999	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	4	17844998	17844999	-	A	INS	NCAPG	ENST00000251496	human	ensembl	74_37	+1	known	frame_shift_ins	c.2998_2999	p.S1002fs	0.989:0.990	NULL	superfamily_ARM-type_fold	-	no_errors	NCAPG	HGNC	ENSG00000109805				195	0	0	121	35	22.4359
SLIT2	0	genome.wustl.edu	37	4	20469438	20469438	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	4	20469438	20469438	A	-	DEL	SLIT2	ENST00000504154	human	ensembl	74_37	+1	known	frame_shift_del	c.459	p.N155fs	1.000	smart_Leu-rich_rpt_typical-subtyp	pfam_EG-like_dom,pfam_Laminin_G,pfam_Leu-rich_rpt,pfam_LRR-contain_N,pfam_Cys-rich_flank_reg_C,superfamily_ConA-like_lec_gl_sf,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_Fol_N,smart_Laminin_G,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	SLIT2	HGNC	ENSG00000145147				58	0	0	34	10	22.7273
RBPJ	0	genome.wustl.edu	37	4	26417146	26417146	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	4	26417146	26417146	A	-	DEL	RBPJ	ENST00000342295	human	ensembl	74_37	+1	known	frame_shift_del	c.244	p.E85fs	1.000	pfam_LAG1_DNA-bd,superfamily_p53-like_TF_DNA-bd	pfam_Beta-trefoil_DNA-bd_dom,pfam_LAG1_DNA-bd,pfam_IPT,superfamily_Beta-trefoil_DNA-bd_dom,superfamily_p53-like_TF_DNA-bd,superfamily_Ig_E-set	-	no_errors	RBPJ	HGNC	ENSG00000168214				268	1	0.371747	156	48	23.5294
FAM193A	0	genome.wustl.edu	37	4	2695394	2695394	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	4	2695394	2695394	C	-	DEL	FAM193A	ENST00000324666	human	ensembl	74_37	+1	known	frame_shift_del	c.2012	p.L673fs	0.593	NULL	NULL	-	no_errors	FAM193A	HGNC	ENSG00000125386				392	0	0	238	48	16.7832
SH3BP2	0	genome.wustl.edu	37	4	2831652	2831652	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	4	2831652	2831652	C	-	DEL	SH3BP2	ENST00000503393	human	ensembl	74_37	+1	known	frame_shift_del	c.1190	p.R399fs	0.989	NULL	pfam_Pleckstrin_homology,pfam_SH2,smart_Pleckstrin_homology,smart_SH2,pfscan_Pleckstrin_homology,pfscan_SH2	-	no_errors	SH3BP2	HGNC	ENSG00000087266				203	0	0	111	30	21.2766
GRK4	0	genome.wustl.edu	37	4	3015470	3015470	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	4	3015470	3015470	A	-	DEL	GRK4	ENST00000398052	human	ensembl	74_37	+1	known	frame_shift_del	c.656	p.R222fs	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_RGS_dom,superfamily_Kinase-like_dom,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal_superfam,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_Regulat_G_prot_signal_superfam,pfscan_Prot_kinase_dom,prints_GPCR_kinase	-	no_errors	GRK4	HGNC	ENSG00000125388				389	0	0	254	45	15.0502
KLF3	0	genome.wustl.edu	37	4	38690460	38690460	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	4	38690460	38690460	A	-	DEL	KLF3	ENST00000261438	human	ensembl	74_37	+1	known	frame_shift_del	c.312	p.K106fs	0.008	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	KLF3	HGNC	ENSG00000109787				158	0	0	117	23	16.4286
TLR1	0	genome.wustl.edu	37	4	38798148	38798148	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	4	38798148	38798148	A	-	DEL	TLR1	ENST00000308979	human	ensembl	74_37	-1	known	frame_shift_del	c.2305	p.W769fs	1.000	pirsf_Toll-like_receptor,pfam_TIR_dom,superfamily_TIR_dom,smart_TIR_dom,pfscan_TIR_dom	pirsf_Toll-like_receptor,pfam_TIR_dom,pfam_Leu-rich_rpt,superfamily_TIR_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_TIR_dom,pfscan_TIR_dom	-	no_errors	TLR1	HGNC	ENSG00000174125				120	0	0	65	18	21.6867
GUF1	0	genome.wustl.edu	37	4	44700615	44700615	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	4	44700615	44700615	A	-	DEL	GUF1	ENST00000281543	human	ensembl	74_37	+1	known	frame_shift_del	c.1927	p.K645fs	0.999	pfam_LepA_GTP-bd_C,tigrfam_EF-4	pfam_EF_GTP-bd_dom,pfam_LepA_GTP-bd_C,pfam_EFG_V,pfam_Transl_elong_EFTu/EF1A_2,pfam_Small_GTPase,superfamily_P-loop_NTPase,superfamily_EFG_III-V,superfamily_Transl_B-barrel,prints_EF_GTP-bd_dom,tigrfam_EF-4,tigrfam_Small_GTP-bd_dom	-	no_errors	GUF1	HGNC	ENSG00000151806				138	0	0	67	31	31.6327
GNPDA2	0	genome.wustl.edu	37	4	44719257	44719257	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	4	44719257	44719257	A	-	DEL	GNPDA2	ENST00000295448	human	ensembl	74_37	-1	known	frame_shift_del	c.282	p.F94fs	1.000	pfam_Glc/Gal-6P_isomerase,tigrfam_Glucosamine6P_isomerase	pfam_Glc/Gal-6P_isomerase,tigrfam_Glucosamine6P_isomerase	-	no_errors	GNPDA2	HGNC	ENSG00000163281				78	0	0	41	14	25.4545
CENPC	0	genome.wustl.edu	37	4	68384936	68384936	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	4	68384936	68384936	T	-	DEL	CENPC	ENST00000273853	human	ensembl	74_37	-1	known	frame_shift_del	c.616	p.R206fs	1.000	NULL	pfam_Mif2/CENP-C_cupin,pfam_Cupin_2,superfamily_RmlC_Cupin	-	no_errors	CENPC	HGNC	ENSG00000145241				82	0	0	63	17	21.25
SULT1B1	0	genome.wustl.edu	37	4	70615468	70615470	+	In_Frame_Del	DEL	GAA	GAA	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	GAA	GAA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	4	70615468	70615470	GAA	-	DEL	SULT1B1	ENST00000310613	human	ensembl	74_37	-1	known	in_frame_del	c.346_344	p.L115in_frame_del	0.959:0.944:0.964	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase	-	no_errors	SULT1B1	HGNC	ENSG00000173597				199	0	0	130	48	26.9663
PPEF2	0	genome.wustl.edu	37	4	76793305	76793305	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	4	76793305	76793305	A	-	DEL	PPEF2	ENST00000286719	human	ensembl	74_37	-1	known	frame_shift_del	c.1522	p.S508fs	1.000	pirsf_Ser/Thr-Pase_EF-hand_contain,smart_Ser/Thr-sp_prot-phosphatase,prints_Ser/Thr-sp_prot-phosphatase	pirsf_Ser/Thr-Pase_EF-hand_contain,pfam_PEstase_dom,pfam_PPP_dom,smart_Ser/Thr-sp_prot-phosphatase,smart_EF_hand_dom,prints_Ser/Thr-sp_prot-phosphatase,pfscan_EF_hand_dom	-	no_errors	PPEF2	HGNC	ENSG00000156194				114	0	0	78	28	26.4151
ANTXR2	0	genome.wustl.edu	37	4	80905990	80905990	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	4	80905990	80905990	C	-	DEL	ANTXR2	ENST00000307333	human	ensembl	74_37	-1	known	frame_shift_del	c.1069	p.A357fs	0.559	pirsf_Anthrax_toxin_rcpt	pirsf_Anthrax_toxin_rcpt,pfam_Anthrax_toxin_rcpt_C,pfam_Anthrax_toxin_rcpt_extracel,pfam_VWF_A,superfamily_Ig_E-set,smart_VWF_A,pfscan_VWF_A	-	no_errors	ANTXR2	HGNC	ENSG00000163297				32	0	0	19	7	26.9231
SEC31A	0	genome.wustl.edu	37	4	83785565	83785565	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	4	83785565	83785565	T	-	DEL	SEC31A	ENST00000432794	human	ensembl	74_37	-1	known	frame_shift_del	c.1384	p.I462fs	0.985	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	SEC31A	HGNC	ENSG00000138674				151	1	0.657895	110	35	24.1379
HERC5	0	genome.wustl.edu	37	4	89381266	89381266	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	4	89381266	89381266	A	-	DEL	HERC5	ENST00000264350	human	ensembl	74_37	+1	known	frame_shift_del	c.410	p.I140fs	1.000	superfamily_RCC1/BLIP-II,prints_Reg_chr_condens	pfam_HECT,pfam_Reg_chr_condens,superfamily_HECT,superfamily_RCC1/BLIP-II,superfamily_Haem_Oase-like_multi-hlx,smart_HECT,pfscan_HECT,pfscan_Reg_chr_condens,prints_Reg_chr_condens	-	no_errors	HERC5	HGNC	ENSG00000138646				53	0	0	30	9	23.0769
PPIP5K2	0	genome.wustl.edu	37	5	102537309	102537309	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	5	102537309	102537309	A	-	DEL	PPIP5K2	ENST00000358359	human	ensembl	74_37	+1	known	frame_shift_del	c.3706	p.N1238fs	0.999	NULL	pfam_His_Pase_superF_clade-2	-	no_errors	PPIP5K2	HGNC	ENSG00000145725				30	0	0	25	8	24.2424
MAN2A1	0	genome.wustl.edu	37	5	109103387	109103388	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	5	109103387	109103388	-	T	INS	MAN2A1	ENST00000261483	human	ensembl	74_37	+1	known	frame_shift_ins	c.987_988	p.W331fs	1.000:1.000	pfam_Glyco_hydro_38_N,superfamily_Glyco_hydro/deAcase_b/a-brl	pfam_Glyco_hydro_38_N,pfam_Glyco_hydro_38_C,pfam_Glyco_hydro_38_cen_dom,superfamily_Gal_mutarotase_SF_dom,superfamily_Glyco_hydro/deAcase_b/a-brl,smart_Glyco_hydro_38_cen_dom	-	no_errors	MAN2A1	HGNC	ENSG00000112893				277	1	0.359712	204	60	22.7273
EPB41L4A	0	genome.wustl.edu	37	5	111519758	111519758	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	5	111519758	111519758	T	-	DEL	EPB41L4A	ENST00000261486	human	ensembl	74_37	-1	known	frame_shift_del	c.1577	p.N526fs	0.988	NULL	pfam_FERM_central,pfam_FERM_N,pfam_FERM_PH-like_C,pfam_FERM-adjacent,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain,prints_Band_41_fam,prints_Ez/rad/moesin_like	-	no_errors	EPB41L4A	HGNC	ENSG00000129595				194	0	0	119	23	16.1972
PRRC1	0	genome.wustl.edu	37	5	126860489	126860489	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	5	126860489	126860489	C	-	DEL	PRRC1	ENST00000512635	human	ensembl	74_37	+1	known	frame_shift_del	c.370	p.P125fs	0.934	NULL	pfam_NTPase/PRRC1	-	no_errors	PRRC1	HGNC	ENSG00000164244				570	0	0	307	101	24.7549
CHSY3	0	genome.wustl.edu	37	5	129241153	129241153	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	5	129241153	129241153	C	-	DEL	CHSY3	ENST00000305031	human	ensembl	74_37	+1	known	frame_shift_del	c.631	p.N213fs	0.998	pfam_Fringe-like	pfam_Chond_GalNAc,pfam_Fringe-like	-	no_errors	CHSY3	HGNC	ENSG00000198108				66	0	0	32	14	30.4348
PCDHA12	0	genome.wustl.edu	37	5	140255609	140255609	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	5	140255609	140255609	A	-	DEL	PCDHA12	ENST00000398631	human	ensembl	74_37	+1	known	frame_shift_del	c.552	p.D187fs	0.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA12	HGNC	ENSG00000251664				82	0	0	40	14	25.9259
TRIO	0	genome.wustl.edu	37	5	14487781	14487781	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	5	14487781	14487781	C	-	DEL	TRIO	ENST00000344204	human	ensembl	74_37	+1	known	frame_shift_del	c.7044	p.V2351fs	1.000	superfamily_Capsid/spike_ssDNA_virus	pfam_DH-domain,pfam_Prot_kinase_dom,pfam_Spectrin_repeat,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ig_I-set,pfam_SH3_domain,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_SH3_domain,superfamily_CRAL-TRIO_dom,superfamily_Capsid/spike_ssDNA_virus,smart_CRAL-TRIO_dom,smart_Spectrin/alpha-actinin,smart_DH-domain,smart_Pleckstrin_homology,smart_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_CRAL-TRIO_dom,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,pfscan_DH-domain	-	no_errors	TRIO	HGNC	ENSG00000038382				25	0	0	20	6	23.0769
RBM27	0	genome.wustl.edu	37	5	145647320	145647320	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	5	145647320	145647320	A	-	DEL	RBM27	ENST00000265271	human	ensembl	74_37	+1	known	frame_shift_del	c.2440	p.K816fs	1.000	NULL	pfam_PWI_dom,pfam_Znf_CCCH,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBM27	HGNC	ENSG00000091009				127	1	0.78125	74	35	32.1101
DPYSL3	0	genome.wustl.edu	37	5	146775201	146775201	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	5	146775201	146775201	G	-	DEL	DPYSL3	ENST00000398514	human	ensembl	74_37	-1	known	frame_shift_del	c.1545	p.A516fs	0.163	NULL	pfam_Amidohydro_1,superfamily_Metal-dep_hydrolase_composite,tigrfam_Hydantoinase/dihydroPyrase	-	no_errors	DPYSL3	HGNC	ENSG00000113657				104	0	0	49	20	28.9855
SPINK5	0	genome.wustl.edu	37	5	147499875	147499875	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	5	147499875	147499875	A	-	DEL	SPINK5	ENST00000359874	human	ensembl	74_37	+1	known	frame_shift_del	c.2459	p.K823fs	0.998	pfam_Kazal_dom,smart_Kazal_dom	pfam_Kazal_dom,smart_Kazal_dom	-	no_errors	SPINK5	HGNC	ENSG00000133710				33	0	0	10	5	33.3333
FBXO38	0	genome.wustl.edu	37	5	147818027	147818027	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	5	147818027	147818027	G	-	DEL	FBXO38	ENST00000340253	human	ensembl	74_37	+1	known	frame_shift_del	c.2990	p.R997fs	1.000	NULL	superfamily_F-box_dom	-	no_errors	FBXO38	HGNC	ENSG00000145868				186	0	0	118	26	18.0556
FAT2	0	genome.wustl.edu	37	5	150886794	150886794	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	5	150886794	150886794	G	-	DEL	FAT2	ENST00000261800	human	ensembl	74_37	-1	known	frame_shift_del	c.12438	p.R4147fs	0.985	NULL	pfam_Cadherin,pfam_Laminin_G,superfamily_Cadherin-like,superfamily_ConA-like_lec_gl_sf,smart_Cadherin,smart_Laminin_G,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT2	HGNC	ENSG00000086570				223	0	0	148	33	18.232
LARP1	0	genome.wustl.edu	37	5	154173390	154173391	+	Frame_Shift_Del	DEL	CC	CC	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	CC	CC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	5	154173390	154173391	CC	-	DEL	LARP1	ENST00000336314	human	ensembl	74_37	+1	known	frame_shift_del	c.668_669	p.P225fs	0.999:0.994	NULL	pfam_Lupus_La_RNA-bd,smart_Lupus_La_RNA-bd,smart_DM15,pfscan_Lupus_La_RNA-bd	-	no_errors	LARP1	HGNC	ENSG00000155506				567	0	0	310	55	15.0685
GABRA6	0	genome.wustl.edu	37	5	161115971	161115971	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	5	161115971	161115971	T	-	DEL	GABRA6	ENST00000274545	human	ensembl	74_37	+1	known	frame_shift_del	c.242	p.F83fs	1.000	pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,prints_Neur_channel,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABAAa_rcpt,prints_GABAA_rcpt,prints_GABBAa6_rcpt,prints_Neur_channel,prints_GABBAg_rcpt,tigrfam_Neur_channel	-	no_errors	GABRA6	HGNC	ENSG00000145863				260	0	0	162	54	25
WWC1	0	genome.wustl.edu	37	5	167850888	167850888	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	5	167850888	167850888	C	-	DEL	WWC1	ENST00000265293	human	ensembl	74_37	+1	known	frame_shift_del	c.1625	p.S544fs	1.000	NULL	pfam_WW_dom,superfamily_C2_dom,superfamily_WW_dom,smart_WW_dom,pfscan_WW_dom	-	no_errors	WWC1	HGNC	ENSG00000113645				151	0	0	72	36	33.3333
SPDL1	0	genome.wustl.edu	37	5	169015404	169015404	+	RNA	DEL	A	A	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	5	169015404	169015404	A	-	DEL	SPDL1	ENST00000510751	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	SPDL1	HGNC	ENSG00000040275				94	0	0	35	33	48.5294
BNIP1	0	genome.wustl.edu	37	5	172578611	172578611	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	5	172578611	172578611	T	-	DEL	BNIP1	ENST00000231668	human	ensembl	74_37	+1	known	frame_shift_del	c.220	p.F76fs	0.000	NULL	pfam_Sec20	-	no_errors	BNIP1	HGNC	ENSG00000113734				157	0	0	121	17	12.3188
CDHR2	0	genome.wustl.edu	37	5	176011640	176011640	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	5	176011640	176011640	G	-	DEL	CDHR2	ENST00000261944	human	ensembl	74_37	+1	known	frame_shift_del	c.2358	p.G788fs	0.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDHR2	HGNC	ENSG00000074276				274	0	0	136	37	21.3873
CDH10	0	genome.wustl.edu	37	5	24488219	24488219	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	5	24488219	24488219	T	-	DEL	CDH10	ENST00000264463	human	ensembl	74_37	-1	known	frame_shift_del	c.1920	p.E641fs	1.000	pfam_Cadherin_cytoplasmic-dom	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	CDH10	HGNC	ENSG00000040731				131	0	0	66	18	21.4286
PDZD2	0	genome.wustl.edu	37	5	31799656	31799657	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	5	31799656	31799657	-	G	INS	PDZD2	ENST00000282493	human	ensembl	74_37	+1	known	frame_shift_ins	c.301_302	p.K104fs	1.000:1.000	superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	PDZD2	HGNC	ENSG00000133401				256	1	0.389105	149	29	16.2921
RICTOR	0	genome.wustl.edu	37	5	38954826	38954826	+	RNA	DEL	T	T	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	5	38954826	38954826	T	-	DEL	RICTOR	ENST00000503698	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RICTOR	HGNC	ENSG00000164327				42	0	0	12	13	52
KIAA0947	0	genome.wustl.edu	37	5	5461230	5461231	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	5	5461230	5461231	-	A	INS	KIAA0947	ENST00000296564	human	ensembl	74_37	+1	known	frame_shift_ins	c.1783_1784	p.E597fs	0.067:0.020	NULL	superfamily_Vitellinogen_superhlx	-	no_errors	KIAA0947	HGNC	ENSG00000164151				242	0	0	128	44	25.5814
SMIM15	0	genome.wustl.edu	37	5	60455819	60455819	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	5	60455819	60455819	T	-	DEL	SMIM15	ENST00000339020	human	ensembl	74_37	-1	known	frame_shift_del	c.180	p.K60fs	1.000	NULL	NULL	-	no_errors	SMIM15	HGNC	ENSG00000188725				249	0	0	145	56	27.8607
IPO11	0	genome.wustl.edu	37	5	61847115	61847115	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	5	61847115	61847115	T	-	DEL	IPO11	ENST00000409296	human	ensembl	74_37	+1	known	frame_shift_del	c.2532	p.S847fs	0.988	superfamily_ARM-type_fold	pfam_Importin-beta_N,superfamily_ARM-type_fold,smart_Importin-beta_N,pfscan_Importin-beta_N	-	no_errors	IPO11	HGNC	ENSG00000086200				258	0	0	151	46	23.3503
WDR41	0	genome.wustl.edu	37	5	76728856	76728856	+	RNA	DEL	A	A	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	5	76728856	76728856	A	-	DEL	WDR41	ENST00000512033	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.004	-	-	-	no_errors	WDR41	HGNC	ENSG00000164253				51	0	0	22	11	33.3333
AP3B1	0	genome.wustl.edu	37	5	77334907	77334907	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	5	77334907	77334907	T	-	DEL	AP3B1	ENST00000255194	human	ensembl	74_37	-1	known	frame_shift_del	c.2769	p.K923fs	0.419	pirsf_AP3_beta	pfam_Clathrin/coatomer_adapt-like_N,superfamily_ARM-type_fold,pirsf_AP3_beta	-	no_errors	AP3B1	HGNC	ENSG00000132842				116	1	0.854701	66	25	27.4725
BRD9	0	genome.wustl.edu	37	5	889777	889777	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	5	889777	889777	A	-	DEL	BRD9	ENST00000323510	human	ensembl	74_37	-1	known	frame_shift_del	c.38	p.F13fs	0.002	NULL	pfam_DUF3512,pfam_Bromodomain,superfamily_Bromodomain,smart_Bromodomain,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BRD9	HGNC	ENSG00000028310				197	0	0	116	24	17.1429
ARRDC3	0	genome.wustl.edu	37	5	90678675	90678677	+	In_Frame_Del	DEL	CTT	CTT	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	CTT	CTT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	5	90678675	90678677	CTT	-	DEL	ARRDC3	ENST00000265138	human	ensembl	74_37	-1	known	in_frame_del	c.235_233	p.E78in_frame_del	1.000:1.000:1.000	pfam_Arrestin-like_N,superfamily_Ig_E-set	pfam_Arrestin-like_N,pfam_Arrestin_C-like,superfamily_Ig_E-set	-	no_errors	ARRDC3	HGNC	ENSG00000113369				274	0	0	147	46	23.8342
MCHR2	0	genome.wustl.edu	37	6	100382358	100382358	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	6	100382358	100382358	A	-	DEL	MCHR2	ENST00000281806	human	ensembl	74_37	-1	known	frame_shift_del	c.623	p.F208fs	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_MCH2_receptor,prints_GPCR_Rhodpsn,prints_MCH_rcpt	-	no_errors	MCHR2	HGNC	ENSG00000152034				106	0	0	54	16	22.8571
ASCC3	0	genome.wustl.edu	37	6	101296336	101296336	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	6	101296336	101296336	A	-	DEL	ASCC3	ENST00000369162	human	ensembl	74_37	-1	known	frame_shift_del	c.489	p.F163fs	1.000	NULL	pfam_Sec63-dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase/UvrB_dom,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_AAA+_ATPase,smart_Helicase_C,smart_Sec63-dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	ASCC3	HGNC	ENSG00000112249				128	0	0	59	20	25.3165
KIAA1919	0	genome.wustl.edu	37	6	111587361	111587361	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	6	111587361	111587361	T	-	DEL	KIAA1919	ENST00000368847	human	ensembl	74_37	+1	known	frame_shift_del	c.596	p.C202fs	0.469	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	-	no_errors	KIAA1919	HGNC	ENSG00000173214				114	1	0.869565	50	37	42.5287
RNF146	0	genome.wustl.edu	37	6	127608767	127608767	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	6	127608767	127608767	G	-	DEL	RNF146	ENST00000368314	human	ensembl	74_37	+1	known	frame_shift_del	c.1009	p.G338fs	1.000	NULL	pfam_WWE-dom,smart_Znf_RING,smart_WWE-dom_subgr,pfscan_WWE-dom,pfscan_Znf_RING	-	no_errors	RNF146	HGNC	ENSG00000118518				181	0	0	127	7	5.22388
ARG1	0	genome.wustl.edu	37	6	131894346	131894346	+	RNA	DEL	A	A	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	6	131894346	131894346	A	-	DEL	ARG1	ENST00000469293	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.285	-	-	-	no_errors	ARG1	HGNC	ENSG00000118520				37	0	0	16	14	46.6667
PBOV1	0	genome.wustl.edu	37	6	138539364	138539365	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	6	138539364	138539365	-	T	INS	PBOV1	ENST00000527246	human	ensembl	74_37	-1	known	frame_shift_ins	c.169_168	p.E56fs	0.003:0.061	NULL	NULL	-	no_errors	PBOV1	HGNC	ENSG00000254440				109	0	0	57	18	24
GRM1	0	genome.wustl.edu	37	6	146755183	146755183	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	6	146755183	146755183	T	-	DEL	GRM1	ENST00000282753	human	ensembl	74_37	+1	known	frame_shift_del	c.2836	p.S947fs	1.000	prints_GPCR_3_mtglu_rcpt_1	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_Metabotropic_Glu_rcpt_Homer-bd,pfam_GPCR_3_9-Cys_dom,superfamily_Peripla_BP_I,pfscan_GPCR_3_C,prints_GPCR_3_mtglu_rcpt_1,prints_GPCR_3,prints_GPCR_3_mtglu_rcpt,prints_GPCR_3_mtglu_rcpt_5	-	no_errors	GRM1	HGNC	ENSG00000152822				316	0	0	164	57	25.7919
SYNE1	0	genome.wustl.edu	37	6	152673183	152673183	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	6	152673183	152673183	T	-	DEL	SYNE1	ENST00000265368	human	ensembl	74_37	-1	known	frame_shift_del	c.11559	p.A3854fs	1.000	pfam_Spectrin_repeat,superfamily_Calpain_domain_III,superfamily_ABC1_TM_dom,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_CH-domain,pfam_KASH,superfamily_CH-domain,superfamily_Calpain_domain_III,superfamily_ABC1_TM_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE1	HGNC	ENSG00000131018				183	0	0	94	39	29.3233
ENSG00000235381	0	genome.wustl.edu	37	6	155575539	155575539	+	RNA	DEL	C	C	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	6	155575539	155575539	C	-	DEL	ENSG00000235381	ENST00000435295	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RP11-477D19.2	Clone_based_vega_gene	ENSG00000235381				96	0	0	51	14	21.5385
SYNJ2	0	genome.wustl.edu	37	6	158497755	158497755	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	6	158497755	158497755	C	-	DEL	SYNJ2	ENST00000355585	human	ensembl	74_37	+1	known	frame_shift_del	c.2390	p.A799fs	0.878	pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase,smart_IPPc	pfam_Syja_N,pfam_DUF1866,pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase,smart_IPPc,pfscan_RRM_dom,pfscan_Syja_N	-	no_errors	SYNJ2	HGNC	ENSG00000078269				85	0	0	55	8	12.6984
WTAP	0	genome.wustl.edu	37	6	160163106	160163106	+	RNA	DEL	T	T	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	6	160163106	160163106	T	-	DEL	WTAP	ENST00000462110	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.006	-	-	-	no_errors	WTAP	HGNC	ENSG00000146457				90	0	0	67	20	22.9885
T	0	genome.wustl.edu	37	6	166571994	166571994	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	6	166571994	166571994	C	-	DEL	T	ENST00000296946	human	ensembl	74_37	-1	known	frame_shift_del	c.1117	p.A373fs	0.438	NULL	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,prints_TF_Brachyury,prints_TF_T-box,pfscan_TF_T-box	-	no_errors	T	HGNC	ENSG00000164458				69	0	0	43	4	8.51064
HLA-F	0	genome.wustl.edu	37	6	29694803	29694803	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	6	29694803	29694803	T	-	DEL	HLA-F	ENST00000259951	human	ensembl	74_37	+1	known	frame_shift_del	c.1180	p.L396fs	1.000	NULL	pfam_MHC_I_a_a1/a2,pfam_Ig_C1-set,superfamily_MHC_I/II-like_Ag-recog,smart_Ig_C1-set,pfscan_Ig-like_dom,prints_MHC_I_a	-	no_errors	HLA-F	HGNC	ENSG00000204642				552	0	0	202	122	37.6543
TRIM26	0	genome.wustl.edu	37	6	30157254	30157254	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	6	30157254	30157254	T	-	DEL	TRIM26	ENST00000437089	human	ensembl	74_37	-1	known	frame_shift_del	c.845	p.K282fs	0.012	NULL	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl_sf,smart_Znf_RING,smart_Znf_B-box,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	TRIM26	HGNC	ENSG00000234127				230	0	0	93	10	9.70874
GPSM3	0	genome.wustl.edu	37	6	32160025	32160026	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	6	32160025	32160026	-	A	INS	GPSM3	ENST00000375040	human	ensembl	74_37	-1	known	frame_shift_ins	c.45_44	p.Q18fs	0.079:0.120	NULL	pfam_GoLoco_motif,smart_GoLoco_motif,pfscan_GoLoco_motif	-	no_errors	GPSM3	HGNC	ENSG00000213654				71	0	0	17	16	48.4848
TAP2	0	genome.wustl.edu	37	6	32805788	32805788	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	6	32805788	32805788	G	-	DEL	TAP2	ENST00000374897	human	ensembl	74_37	-1	known	frame_shift_del	c.223	p.L75fs	0.060	prints_ABC_B3,tigrfam_Ag_transporter2	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC1_TM_dom,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom,prints_ABC_B3,prints_ABC_B2,tigrfam_Ag_transporter2	-	no_errors	TAP2	HGNC	ENSG00000204267				161	0	0	24	32	57.1429
TRERF1	0	genome.wustl.edu	37	6	42231112	42231112	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	6	42231112	42231112	G	-	DEL	TRERF1	ENST00000541110	human	ensembl	74_37	-1	known	frame_shift_del	c.1830	p.S611fs	0.834	NULL	pfam_ELM2_dom,superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_SANT/Myb,pfscan_ELM2_dom,pfscan_Znf_C2H2	-	no_errors	TRERF1	HGNC	ENSG00000124496				172	0	0	87	27	23.6842
ENPP4	0	genome.wustl.edu	37	6	46107942	46107942	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	6	46107942	46107942	A	-	DEL	ENPP4	ENST00000321037	human	ensembl	74_37	+1	known	frame_shift_del	c.622	p.I210fs	0.950	pfam_Phosphodiest/P_Trfase,pfam_Sulfatase,superfamily_Alkaline_phosphatase_core	pfam_Phosphodiest/P_Trfase,pfam_Sulfatase,superfamily_Alkaline_phosphatase_core	-	no_errors	ENPP4	HGNC	ENSG00000001561				243	0	0	110	41	27.1523
GPR115	0	genome.wustl.edu	37	6	47682443	47682443	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	6	47682443	47682443	T	-	DEL	GPR115	ENST00000371220	human	ensembl	74_37	+1	known	frame_shift_del	c.1633	p.F546fs	1.000	pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like,prints_GPCR_2_Ig-hepta_rcpt	-	no_errors	GPR115	HGNC	ENSG00000153294				611	0	0	404	123	23.3397
DST	0	genome.wustl.edu	37	6	56484643	56484643	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	6	56484643	56484643	T	-	DEL	DST	ENST00000370765	human	ensembl	74_37	-1	known	frame_shift_del	c.4189	p.T1397fs	0.006	NULL	pfam_Plectin_repeat,pfam_Spectrin_repeat,superfamily_Ig/albumin-bd,smart_Spectrin/alpha-actinin,smart_Plectin_repeat	-	no_errors	DST	HGNC	ENSG00000151914				250	0	0	109	38	25.8503
SMAP1	0	genome.wustl.edu	37	6	71508370	71508370	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	6	71508370	71508370	A	-	DEL	SMAP1	ENST00000370455	human	ensembl	74_37	+1	known	frame_shift_del	c.506	p.K172fs	1.000	NULL	pfam_ArfGAP,smart_ArfGAP,pfscan_ArfGAP,prints_ArfGAP	-	no_errors	SMAP1	HGNC	ENSG00000112305				13	0	0	3	6	66.6667
DSP	0	genome.wustl.edu	37	6	7580103	7580103	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	6	7580103	7580103	A	-	DEL	DSP	ENST00000379802	human	ensembl	74_37	+1	known	frame_shift_del	c.3680	p.E1229fs	1.000	NULL	pfam_Plectin_repeat,smart_Spectrin/alpha-actinin,smart_Plectin_repeat	-	no_errors	DSP	HGNC	ENSG00000096696				227	0	0	114	46	28.75
DSP	0	genome.wustl.edu	37	6	7580509	7580509	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	6	7580509	7580509	A	-	DEL	DSP	ENST00000379802	human	ensembl	74_37	+1	known	frame_shift_del	c.4086	p.N1364fs	0.741	NULL	pfam_Plectin_repeat,smart_Spectrin/alpha-actinin,smart_Plectin_repeat	-	no_errors	DSP	HGNC	ENSG00000096696				211	0	0	105	33	23.913
TTK	0	genome.wustl.edu	37	6	80751897	80751897	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	6	80751897	80751897	A	-	DEL	TTK	ENST00000369798	human	ensembl	74_37	+1	known	frame_shift_del	c.2552	p.R854fs	0.102	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	TTK	HGNC	ENSG00000112742				71	0	0	43	4	8.51064
BCKDHB	0	genome.wustl.edu	37	6	80881073	80881074	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	6	80881073	80881074	-	T	INS	BCKDHB	ENST00000320393	human	ensembl	74_37	+1	known	frame_shift_ins	c.708_709	p.E238fs	1.000:1.000	pfam_Transketolase-like_Pyr-bd,smart_Transketolase-like_Pyr-bd	pfam_Transketolase-like_Pyr-bd,pfam_Transketolase_C,superfamily_Transketo_C/Pyr-ferredox_oxred,smart_Transketolase-like_Pyr-bd	-	no_errors	BCKDHB	HGNC	ENSG00000083123				60	0	0	36	6	14.2857
MDN1	0	genome.wustl.edu	37	6	90415853	90415853	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	6	90415853	90415853	A	-	DEL	MDN1	ENST00000369393	human	ensembl	74_37	-1	known	frame_shift_del	c.8073	p.F2691fs	1.000	pirsf_Midasin	pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA-3,superfamily_P-loop_NTPase,superfamily_ARM-type_fold,smart_AAA+_ATPase,smart_VWF_A,pirsf_Midasin,pfscan_VWF_A	-	no_errors	MDN1	HGNC	ENSG00000112159				153	0	0	76	17	18.2796
CASP8AP2	0	genome.wustl.edu	37	6	90576391	90576391	+	RNA	DEL	A	A	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	6	90576391	90576391	A	-	DEL	CASP8AP2	ENST00000237177	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	CASP8AP2	HGNC	ENSG00000118412				27	0	0	22	3	12
MAP3K7	0	genome.wustl.edu	37	6	91226169	91226170	+	RNA	INS	-	-	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	6	91226169	91226170	-	A	INS	MAP3K7	ENST00000479630	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.999:0.947	-	-	-	no_errors	MAP3K7	HGNC	ENSG00000135341				103	0	0	49	20	28.9855
MEPCE	0	genome.wustl.edu	37	7	100028068	100028068	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	7	100028068	100028068	G	-	DEL	MEPCE	ENST00000310512	human	ensembl	74_37	+1	known	frame_shift_del	c.427	p.G145fs	0.496	NULL	pfam_Bin3	-	no_errors	MEPCE	HGNC	ENSG00000146834				31	0	0	12	8	40
PUS7	0	genome.wustl.edu	37	7	105122810	105122810	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	7	105122810	105122810	T	-	DEL	PUS7	ENST00000356362	human	ensembl	74_37	-1	known	frame_shift_del	c.998	p.N333fs	1.000	pfam_PsdUridine_synth_TruD,superfamily_PsdUridine_synth_cat_dom,pirsf_PsdUridine_synth_TruD_euk,tigrfam_PsdUridine_synth_TruD	pfam_PsdUridine_synth_TruD,superfamily_PsdUridine_synth_cat_dom,pirsf_PsdUridine_synth_TruD_euk,pfscan_PsdUridine_synth_TruD_insert,tigrfam_PsdUridine_synth_TruD	-	no_errors	PUS7	HGNC	ENSG00000091127				466	0	0	264	94	26.257
PHF14	0	genome.wustl.edu	37	7	11022426	11022426	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	7	11022426	11022426	A	-	DEL	PHF14	ENST00000403050	human	ensembl	74_37	+1	known	frame_shift_del	c.540	p.K182fs	0.990	NULL	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	PHF14	HGNC	ENSG00000106443				85	0	0	62	15	19.4805
PPP1R3A	0	genome.wustl.edu	37	7	113518397	113518398	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	7	113518397	113518398	-	A	INS	PPP1R3A	ENST00000284601	human	ensembl	74_37	-1	known	frame_shift_ins	c.2750_2749	p.S917fs	0.002:0.001	NULL	pfam_CBM_21,pfscan_CBM_21	-	no_errors	PPP1R3A	HGNC	ENSG00000154415				293	0	0	166	51	23.5023
SCIN	0	genome.wustl.edu	37	7	12664736	12664737	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	7	12664736	12664737	-	G	INS	SCIN	ENST00000297029	human	ensembl	74_37	+1	known	frame_shift_ins	c.861_862	p.A288fs	0.986:0.997	pfam_Gelsolin_dom,smart_Villin/Gelsolin	pfam_Gelsolin_dom,smart_Villin/Gelsolin,prints_Villin/Gelsolin	-	no_errors	SCIN	HGNC	ENSG00000006747				26	0	0	16	3	15.7895
ZNF800	0	genome.wustl.edu	37	7	127014068	127014068	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	7	127014068	127014068	T	-	DEL	ZNF800	ENST00000265827	human	ensembl	74_37	-1	known	frame_shift_del	c.1322	p.K441fs	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF800	HGNC	ENSG00000048405				199	0	0	72	39	35.1351
ATP6V1F	0	genome.wustl.edu	37	7	128502969	128502969	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	7	128502969	128502969	G	-	DEL	ATP6V1F	ENST00000249289	human	ensembl	74_37	+1	known	frame_shift_del	c.11	p.G5fs	1.000	pirsf_ATPase_V1-cplx_fsu_euk,tigrfam_ATPase_V1-cplx_fsu_euk	pfam_ATPase_V1-cplx_f_g_su,pirsf_ATPase_V1-cplx_fsu_euk,tigrfam_ATPase_V1-cplx_fsu_euk	-	no_errors	ATP6V1F	HGNC	ENSG00000128524				44	0	0	30	4	11.7647
ATP6V0A4	0	genome.wustl.edu	37	7	138394461	138394461	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	7	138394461	138394461	A	-	DEL	ATP6V0A4	ENST00000310018	human	ensembl	74_37	-1	known	frame_shift_del	c.2337	p.F779fs	0.983	pfam_V-ATPase_116kDa_su	pfam_V-ATPase_116kDa_su	-	no_errors	ATP6V0A4	HGNC	ENSG00000105929				403	0	0	213	40	15.8103
SSPO	0	genome.wustl.edu	37	7	149523542	149523543	+	RNA	INS	-	-	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	7	149523542	149523543	-	C	INS	SSPO	ENST00000378016	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000:0.997	-	-	-	no_errors	SSPO	HGNC	ENSG00000197558				43	0	0	19	6	24
XRCC2	0	genome.wustl.edu	37	7	152345769	152345769	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	7	152345769	152345769	T	-	DEL	XRCC2	ENST00000359321	human	ensembl	74_37	-1	known	frame_shift_del	c.801	p.K267fs	0.957	superfamily_P-loop_NTPase	pfam_DNA_recomb/repair_Rad51_C,superfamily_P-loop_NTPase,pfscan_DNA_recomb_RecA/RadB_ATP-bd	-	no_errors	XRCC2	HGNC	ENSG00000196584				151	0	0	77	32	29.3578
HOXA11	0	genome.wustl.edu	37	7	27222462	27222462	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	7	27222462	27222462	T	-	DEL	HOXA11	ENST00000006015	human	ensembl	74_37	-1	known	frame_shift_del	c.895	p.I299fs	1.000	superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	pfam_DUF3528,pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa	-	no_errors	HOXA11	HGNC	ENSG00000005073				253	1	0.393701	134	58	30.2083
TRIL	0	genome.wustl.edu	37	7	28996482	28996482	+	RNA	DEL	G	G	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	7	28996482	28996482	G	-	DEL	TRIL	ENST00000322982	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.426	-	-	-	no_errors	TRIL	HGNC	ENSG00000176734				91	0	0	44	8	15.3846
CARD11	0	genome.wustl.edu	37	7	2968323	2968323	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	7	2968323	2968323	G	-	DEL	CARD11	ENST00000396946	human	ensembl	74_37	-1	known	frame_shift_del	c.1663	p.R555fs	0.080	NULL	pfam_CARD,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,superfamily_PDZ,pfscan_CARD	-	no_errors	CARD11	HGNC	ENSG00000198286				139	0	0	52	27	34.1772
C7orf25	0	genome.wustl.edu	37	7	42949523	42949524	+	Frame_Shift_Del	DEL	CT	CT	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	CT	CT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	7	42949523	42949524	CT	-	DEL	C7orf25	ENST00000431882	human	ensembl	74_37	-1	known	frame_shift_del	c.1151_1150	p.R384fs	1.000:1.000	pfam_DUF1308	pfam_DUF1308	-	no_errors	C7orf25	HGNC	ENSG00000136197				201	0	0	70	37	34.5794
TNS3	0	genome.wustl.edu	37	7	47336680	47336681	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	7	47336680	47336681	-	T	INS	TNS3	ENST00000311160	human	ensembl	74_37	-1	known	frame_shift_ins	c.3676_3675	p.A1225fs	1.000:1.000	pfam_SH2,smart_SH2,pfscan_SH2	pfam_PTB,pfam_Tensin_phosphatase_C2-dom,pfam_SH2,superfamily_C2_dom,smart_Tyr_Pase_cat,smart_SH2,smart_PTB/PI_dom,pfscan_SH2,pfscan_Tyr/Dual-sp_Pase,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	TNS3	HGNC	ENSG00000136205				266	0	0	127	39	23.494
FIGNL1	0	genome.wustl.edu	37	7	50514060	50514060	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	7	50514060	50514060	T	-	DEL	FIGNL1	ENST00000356889	human	ensembl	74_37	-1	known	frame_shift_del	c.926	p.K309fs	0.976	NULL	pfam_ATPase_AAA_core,pfam_Vps4_C,pfam_DNA_helicase_Holl-junc_RuvB_N,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	FIGNL1	HGNC	ENSG00000132436				163	0	0	80	17	17.5258
DTX2P1-UPK3BP1-PMS2P11	0	genome.wustl.edu	37	7	76610356	76610356	+	RNA	DEL	C	C	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	7	76610356	76610356	C	-	DEL	DTX2P1-UPK3BP1-PMS2P11	ENST00000584900	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.847	-	-	-	no_errors	DTX2P1-UPK3BP1-PMS2P11	HGNC	ENSG00000265479				257	0	0	133	69	34.1584
PCLO	0	genome.wustl.edu	37	7	82595551	82595551	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	7	82595551	82595551	T	-	DEL	PCLO	ENST00000333891	human	ensembl	74_37	-1	known	frame_shift_del	c.3553	p.I1185fs	0.000	NULL	pfam_Znf_piccolo,pfam_C2_dom,pfam_PDZ,superfamily_C2_dom,superfamily_PDZ,superfamily_Znf_FYVE_PHD,smart_PDZ,smart_C2_dom,pfscan_C2_dom,pfscan_PDZ	-	no_errors	PCLO	HGNC	ENSG00000186472				238	0	0	125	40	24.2424
RUNDC3B	0	genome.wustl.edu	37	7	87258157	87258157	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	7	87258157	87258157	G	-	DEL	RUNDC3B	ENST00000338056	human	ensembl	74_37	+1	known	frame_shift_del	c.18	p.G8fs	1.000	NULL	pfam_Run,smart_Run,pfscan_Run	-	no_errors	RUNDC3B	HGNC	ENSG00000105784				15	0	0	6	5	45.4545
AKAP9	0	genome.wustl.edu	37	7	91671392	91671393	+	Frame_Shift_Del	DEL	AG	AG	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	7	91671392	91671393	AG	-	DEL	AKAP9	ENST00000359028	human	ensembl	74_37	+1	known	frame_shift_del	c.4986_4987	p.R1666fs	1.000:1.000	NULL	pfam_PACT_domain,superfamily_Prefoldin,superfamily_YbaB	-	no_errors	AKAP9	HGNC	ENSG00000127914				134	0	0	72	16	18.1818
TRIM4	0	genome.wustl.edu	37	7	99489911	99489913	+	In_Frame_Del	DEL	AGA	AGA	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	AGA	AGA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	7	99489911	99489913	AGA	-	DEL	TRIM4	ENST00000355947	human	ensembl	74_37	-1	known	in_frame_del	c.1378_1376	p.F459in_frame_del	1.000:1.000:1.000	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl_sf,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,prints_Butyrophylin	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl_sf,smart_Znf_RING,smart_Znf_B-box,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	TRIM4	HGNC	ENSG00000146833				475	0	0	238	82	25.625
VPS13B	0	genome.wustl.edu	37	8	100133608	100133608	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	8	100133608	100133608	C	-	DEL	VPS13B	ENST00000358544	human	ensembl	74_37	+1	known	frame_shift_del	c.1141	p.Q381fs	0.940	NULL	pfam_Autophagy-rel_C	-	no_errors	VPS13B	HGNC	ENSG00000132549				245	0	0	225	13	5.46218
RGS22	0	genome.wustl.edu	37	8	100990178	100990178	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	8	100990178	100990178	T	-	DEL	RGS22	ENST00000360863	human	ensembl	74_37	-1	known	frame_shift_del	c.3486	p.K1162fs	0.010	NULL	pfam_RGS_dom,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal_superfam,pfscan_Regulat_G_prot_signal_superfam	-	no_errors	RGS22	HGNC	ENSG00000132554				119	0	0	113	34	23.1293
POLR2K	0	genome.wustl.edu	37	8	101164033	101164033	+	RNA	DEL	T	T	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	8	101164033	101164033	T	-	DEL	POLR2K	ENST00000519765	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.004	-	-	-	no_errors	POLR2K	HGNC	ENSG00000147669				45	0	0	34	10	22.7273
UBR5	0	genome.wustl.edu	37	8	103289349	103289349	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	8	103289349	103289349	T	-	DEL	UBR5	ENST00000520539	human	ensembl	74_37	-1	known	frame_shift_del	c.6360	p.E2121fs	0.987	NULL	pfam_HECT,pfam_E3_UbLigase_EDD_UBA,pfam_PABP_HYD,pfam_Znf_N-recognin,superfamily_HECT,superfamily_PABP_HYD,superfamily_RCC1/BLIP-II,smart_Znf_N-recognin_met,smart_PABP_HYD,smart_HECT,pfscan_HECT,pfscan_Znf_N-recognin	-	no_errors	UBR5	HGNC	ENSG00000104517				263	0	0	160	105	39.6226
LRP12	0	genome.wustl.edu	37	8	105509717	105509717	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	8	105509717	105509717	A	-	DEL	LRP12	ENST00000424843	human	ensembl	74_37	-1	known	frame_shift_del	c.1006	p.C336fs	1.000	pfam_CUB_dom,superfamily_CUB_dom,smart_CUB_dom,pfscan_CUB_dom	pfam_CUB_dom,pfam_LDrepeatLR_classA_rpt,superfamily_CUB_dom,superfamily_LDrepeatLR_classA_rpt,smart_CUB_dom,smart_LDrepeatLR_classA_rpt,pfscan_CUB_dom,pfscan_LDrepeatLR_classA_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP12	HGNC	ENSG00000147650				207	0	0	160	32	16.6667
SOX7	0	genome.wustl.edu	37	8	10583646	10583646	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	8	10583646	10583646	G	-	DEL	SOX7	ENST00000553390	human	ensembl	74_37	-1	known	frame_shift_del	c.925	p.L309fs	0.665	pfam_Sox_C_TAD	pfam_Sox_C_TAD,pfam_G_patch_dom,pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_G_patch_dom,pfscan_G_patch_dom,pfscan_HMG_box_dom	-	no_errors	SOX7	HGNC	ENSG00000171056				106	0	0	85	21	19.8113
ATAD2	0	genome.wustl.edu	37	8	124368685	124368685	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	8	124368685	124368685	A	-	DEL	ATAD2	ENST00000287394	human	ensembl	74_37	-1	known	frame_shift_del	c.1590	p.F530fs	1.000	pfam_ATPase_AAA_core,superfamily_P-loop_NTPase,smart_AAA+_ATPase	pfam_ATPase_AAA_core,pfam_Bromodomain,superfamily_P-loop_NTPase,superfamily_Bromodomain,smart_AAA+_ATPase,smart_Bromodomain,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	ATAD2	HGNC	ENSG00000156802				58	0	0	72	6	7.69231
DLC1	0	genome.wustl.edu	37	8	12957997	12957997	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	8	12957997	12957997	G	-	DEL	DLC1	ENST00000276297	human	ensembl	74_37	-1	known	frame_shift_del	c.1849	p.R617fs	0.834	NULL	pfam_START_lipid-bd_dom,pfam_RhoGAP_dom,pfam_SAM_2,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,smart_START_lipid-bd_dom,pfscan_START_lipid-bd_dom,pfscan_RhoGAP_dom	-	no_errors	DLC1	HGNC	ENSG00000164741				211	0	0	176	23	11.5578
ZFAT-AS1	0	genome.wustl.edu	37	8	135612914	135612914	+	RNA	DEL	A	A	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	8	135612914	135612914	A	-	DEL	ZFAT-AS1	ENST00000505776	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	ZFAT-AS1	HGNC	ENSG00000248492				99	0	0	86	16	15.6863
AGO2	0	genome.wustl.edu	37	8	141559309	141559309	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	8	141559309	141559309	C	-	DEL	AGO2	ENST00000220592	human	ensembl	74_37	-1	known	frame_shift_del	c.1492	p.A498fs	0.995	NULL	pfam_Piwi,pfam_PAZ_dom,pfam_DUF1785,superfamily_RNaseH-like_dom,superfamily_PAZ_dom,smart_PAZ_dom,smart_Piwi,pfscan_PAZ_dom,pfscan_Piwi	-	no_errors	AGO2	HGNC	ENSG00000123908				84	0	0	79	5	5.95238
SCRIB	0	genome.wustl.edu	37	8	144890900	144890902	+	In_Frame_Del	DEL	TCC	TCC	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	TCC	TCC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	8	144890900	144890902	TCC	-	DEL	SCRIB	ENST00000320476	human	ensembl	74_37	-1	known	in_frame_del	c.1994_1992	p.E666in_frame_del	0.923:0.929:0.830	NULL	pfam_PDZ,pfam_Leu-rich_rpt,superfamily_PDZ,smart_Leu-rich_rpt_typical-subtyp,smart_PDZ,pfscan_PDZ	-	no_errors	SCRIB	HGNC	ENSG00000180900				103	0	0	96	19	16.5217
MYOM2	0	genome.wustl.edu	37	8	2088683	2088683	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	8	2088683	2088683	G	-	DEL	MYOM2	ENST00000262113	human	ensembl	74_37	+1	known	frame_shift_del	c.3838	p.S1282fs	1.000	NULL	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	MYOM2	HGNC	ENSG00000036448				183	0	0	136	17	11.1111
DMTN	0	genome.wustl.edu	37	8	21926551	21926552	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	8	21926551	21926552	-	C	INS	DMTN	ENST00000265800	human	ensembl	74_37	+1	known	frame_shift_ins	c.274_275	p.P95fs	1.000:1.000	NULL	pfam_Villin_headpiece,superfamily_Villin_headpiece,smart_Villin_headpiece,pfscan_Villin_headpiece	-	no_errors	DMTN	HGNC	ENSG00000158856				187	0	0	162	16	8.98876
ADAM28	0	genome.wustl.edu	37	8	24188715	24188715	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	8	24188715	24188715	T	-	DEL	ADAM28	ENST00000265769	human	ensembl	74_37	+1	known	frame_shift_del	c.1156	p.F387fs	0.969	pfam_Peptidase_M12B,pfscan_Peptidase_M12B	pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_ADAM_Cys-rich,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_EG-like_dom,pfscan_Peptidase_M12B,prints_Blood-coag_inhib_Disintegrin	-	no_errors	ADAM28	HGNC	ENSG00000042980				327	0	0	270	46	14.557
ADAMDEC1	0	genome.wustl.edu	37	8	24257686	24257686	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	8	24257686	24257686	A	-	DEL	ADAMDEC1	ENST00000256412	human	ensembl	74_37	+1	known	frame_shift_del	c.1015	p.K341fs	0.044	pfam_Peptidase_M12B,pfscan_Peptidase_M12B	pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,pfscan_Blood-coag_inhib_Disintegrin,pfscan_Peptidase_M12B	-	no_errors	ADAMDEC1	HGNC	ENSG00000134028				53	0	0	32	16	33.3333
RBPMS	0	genome.wustl.edu	37	8	30361897	30361898	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	8	30361897	30361898	-	A	INS	RBPMS	ENST00000339877	human	ensembl	74_37	+1	known	frame_shift_ins	c.341_342	p.N115fs	1.000:1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBPMS	HGNC	ENSG00000157110				192	0	0	169	26	13.3333
RAB11FIP1	0	genome.wustl.edu	37	8	37730180	37730181	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	8	37730180	37730181	-	T	INS	RAB11FIP1	ENST00000330843	human	ensembl	74_37	-1	known	frame_shift_ins	c.2140_2139	p.Q713fs	0.015:0.000	NULL	pfam_Rab-bd_FIP-RBD,pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	-	no_errors	RAB11FIP1	HGNC	ENSG00000156675				163	0	0	111	26	18.9781
PCMTD1	0	genome.wustl.edu	37	8	52758239	52758239	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	8	52758239	52758239	T	-	DEL	PCMTD1	ENST00000360540	human	ensembl	74_37	-1	known	frame_shift_del	c.392	p.N131fs	1.000	pfam_PCMT	pfam_PCMT	-	no_errors	PCMTD1	HGNC	ENSG00000168300				79	0	0	56	14	20
CHD7	0	genome.wustl.edu	37	8	61778454	61778454	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	8	61778454	61778454	G	-	DEL	CHD7	ENST00000423902	human	ensembl	74_37	+1	known	frame_shift_del	c.8956	p.D2988fs	1.000	NULL	pfam_SNF2_N,pfam_BRK_domain,pfam_Chromo_domain,pfam_Helicase_C,superfamily_P-loop_NTPase,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,smart_BRK_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD7	HGNC	ENSG00000171316				34	0	0	26	5	16.129
RRS1	0	genome.wustl.edu	37	8	67341501	67341501	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	8	67341501	67341501	C	-	DEL	RRS1	ENST00000320270	human	ensembl	74_37	+1	known	frame_shift_del	c.135	p.P47fs	1.000	pfam_Ribosom_reg	pfam_Ribosom_reg	-	no_errors	RRS1	HGNC	ENSG00000179041				14	0	0	16	8	33.3333
SGK3	0	genome.wustl.edu	37	8	67763086	67763086	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	8	67763086	67763086	T	-	DEL	SGK3	ENST00000345714	human	ensembl	74_37	+1	known	frame_shift_del	c.1251	p.F419fs	0.029	pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Phox,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_Phox,smart_Phox,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_Phox,pfscan_Prot_kinase_dom	-	no_errors	SGK3	HGNC	ENSG00000104205				23	0	0	24	3	11.1111
SULF1	0	genome.wustl.edu	37	8	70514026	70514026	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	8	70514026	70514026	T	-	DEL	SULF1	ENST00000260128	human	ensembl	74_37	+1	known	frame_shift_del	c.1023	p.F343fs	0.786	pfam_Sulfatase,superfamily_Alkaline_phosphatase_core,pirsf_Extracellular_sulfatase	pfam_Sulfatase,pfam_Extracellular_sulfatase_C,pfam_Phosphodiest/P_Trfase,superfamily_Alkaline_phosphatase_core,pirsf_Extracellular_sulfatase	-	no_errors	SULF1	HGNC	ENSG00000137573				604	1	0.165289	533	115	17.7469
PRDM14	0	genome.wustl.edu	37	8	70981471	70981471	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	8	70981471	70981471	C	-	DEL	PRDM14	ENST00000276594	human	ensembl	74_37	-1	known	frame_shift_del	c.625	p.V209fs	0.000	NULL	pfam_Znf_C2H2,pfam_SET_dom,smart_SET_dom,smart_Znf_C2H2-like,pfscan_SET_dom,pfscan_Znf_C2H2	-	no_errors	PRDM14	HGNC	ENSG00000147596				211	0	0	161	29	15.2632
TRPA1	0	genome.wustl.edu	37	8	72958792	72958792	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	8	72958792	72958792	T	-	DEL	TRPA1	ENST00000262209	human	ensembl	74_37	-1	known	frame_shift_del	c.2017	p.T673fs	0.001	NULL	pfam_Ankyrin_rpt,pfam_Ion_trans_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	TRPA1	HGNC	ENSG00000104321				197	0	0	158	33	17.2775
KCNB2	0	genome.wustl.edu	37	8	73480397	73480397	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	8	73480397	73480397	A	-	DEL	KCNB2	ENST00000523207	human	ensembl	74_37	+1	known	frame_shift_del	c.428	p.E146fs	1.000	prints_K_chnl_volt-dep_Kv2	pfam_K_chnl_volt-dep_Kv2,pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv2.2,prints_K_chnl_volt-dep_Kv2,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv6,prints_K_chnl_volt-dep_Kv3,prints_K_chnl_volt-dep_Kv8	-	no_errors	KCNB2	HGNC	ENSG00000182674				265	0	0	179	32	15.1659
STAU2	0	genome.wustl.edu	37	8	74507471	74507471	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	8	74507471	74507471	T	-	DEL	STAU2	ENST00000524300	human	ensembl	74_37	-1	known	frame_shift_del	c.1091	p.N364fs	1.000	pfam_dsRNA-bd_dom,smart_dsRNA-bd_dom,pfscan_dsRNA-bd_dom	pfam_dsRNA-bd_dom,smart_dsRNA-bd_dom,pfscan_dsRNA-bd_dom	-	no_errors	STAU2	HGNC	ENSG00000040341				131	0	0	111	25	18.3824
IL7	0	genome.wustl.edu	37	8	79588016	79588016	+	RNA	DEL	T	T	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	8	79588016	79588016	T	-	DEL	IL7	ENST00000523959	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.995	-	-	-	no_errors	IL7	HGNC	ENSG00000104432				205	0	0	158	32	16.8421
ENSG00000253334	0	genome.wustl.edu	37	8	82727641	82727641	+	RNA	DEL	A	A	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	8	82727641	82727641	A	-	DEL	ENSG00000253334	ENST00000524337	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.496	-	-	-	no_errors	RP13-923O23.6	Clone_based_vega_gene	ENSG00000253334				45	0	0	20	11	35.4839
RALYL	0	genome.wustl.edu	37	8	85799997	85799997	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	8	85799997	85799997	G	-	DEL	RALYL	ENST00000521268	human	ensembl	74_37	+1	known	frame_shift_del	c.844	p.G283fs	1.000	pirsf_hnRNP_C_Raly	pfam_RRM_dom,smart_RRM_dom,pirsf_hnRNP_C_Raly,pfscan_RRM_dom	-	no_errors	RALYL	HGNC	ENSG00000184672				204	0	0	145	30	17.1429
LRRCC1	0	genome.wustl.edu	37	8	86041489	86041489	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	8	86041489	86041489	A	-	DEL	LRRCC1	ENST00000360375	human	ensembl	74_37	+1	known	frame_shift_del	c.1501	p.K502fs	1.000	NULL	pfam_Leu-rich_rpt,superfamily_Prefoldin	-	no_errors	LRRCC1	HGNC	ENSG00000133739				247	1	0.403226	226	59	20.7018
RBM12B	0	genome.wustl.edu	37	8	94746312	94746312	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	8	94746312	94746312	G	-	DEL	RBM12B	ENST00000399300	human	ensembl	74_37	-1	known	frame_shift_del	c.2327	p.P776fs	0.042	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBM12B	HGNC	ENSG00000183808				147	0	0	99	18	15.3846
ESRP1	0	genome.wustl.edu	37	8	95686611	95686611	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	8	95686611	95686611	A	-	DEL	ESRP1	ENST00000433389	human	ensembl	74_37	+1	known	frame_shift_del	c.1528	p.N512fs	1.000	smart_RRM_dom	superfamily_RNaseH-like_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	ESRP1	HGNC	ENSG00000104413				114	0	0	92	23	20
SNORA72	0	genome.wustl.edu	37	8	99054837	99054837	+	RNA	DEL	A	A	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	8	99054837	99054837	A	-	DEL	SNORA72	ENST00000501016	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.049	-	-	-	no_errors	KB-1208A12.3	Clone_based_vega_gene	ENSG00000245970				99	0	0	73	30	29.1262
XPA	0	genome.wustl.edu	37	9	100437634	100437634	+	RNA	DEL	T	T	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	9	100437634	100437634	T	-	DEL	XPA	ENST00000485042	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.004	-	-	-	no_errors	XPA	HGNC	ENSG00000136936				10	0	0	9	5	35.7143
SUSD1	0	genome.wustl.edu	37	9	114825229	114825229	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	9	114825229	114825229	T	-	DEL	SUSD1	ENST00000374264	human	ensembl	74_37	-1	known	frame_shift_del	c.1838	p.N613fs	0.991	NULL	pfam_EGF-like_Ca-bd_dom,pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,superfamily_Fibronectin_type3,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Sushi_SCR_CCP,pfscan_EG-like_dom,pfscan_Sushi_SCR_CCP	-	no_errors	SUSD1	HGNC	ENSG00000106868				356	1	0.280112	191	66	25.6809
ZFP37	0	genome.wustl.edu	37	9	115806416	115806416	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	9	115806416	115806416	T	-	DEL	ZFP37	ENST00000553380	human	ensembl	74_37	-1	known	frame_shift_del	c.527	p.N176fs	0.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZFP37	HGNC	ENSG00000136866				212	1	0.469484	115	36	23.8411
GAPVD1	0	genome.wustl.edu	37	9	128116933	128116933	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	9	128116933	128116933	A	-	DEL	GAPVD1	ENST00000394105	human	ensembl	74_37	+1	known	frame_shift_del	c.3651	p.R1219fs	1.000	NULL	pfam_RasGAP,pfam_VPS9,superfamily_Rho_GTPase_activation_prot,smart_VPS9_subgr,pfscan_VPS9,pfscan_RasGAP	-	no_errors	GAPVD1	HGNC	ENSG00000165219				230	0	0	115	42	26.7516
MVB12B	0	genome.wustl.edu	37	9	129157961	129157961	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	9	129157961	129157961	C	-	DEL	MVB12B	ENST00000361171	human	ensembl	74_37	+1	known	frame_shift_del	c.647	p.N218fs	1.000	pfam_FAM125	pfam_FAM125	-	no_errors	MVB12B	HGNC	ENSG00000196814				326	0	0	186	25	11.8483
SLC2A8	0	genome.wustl.edu	37	9	130165880	130165880	+	RNA	DEL	G	G	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	9	130165880	130165880	G	-	DEL	SLC2A8	ENST00000489239	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SLC2A8	HGNC	ENSG00000136856				103	0	0	56	11	16.4179
ODF2	0	genome.wustl.edu	37	9	131222909	131222909	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	9	131222909	131222909	A	-	DEL	ODF2	ENST00000351030	human	ensembl	74_37	+1	known	frame_shift_del	c.72	p.K26fs	1.000	NULL	NULL	-	no_errors	ODF2	HGNC	ENSG00000136811				180	0	0	94	27	22.314
NUP214	0	genome.wustl.edu	37	9	134007993	134007993	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	9	134007993	134007993	A	-	DEL	NUP214	ENST00000451030	human	ensembl	74_37	+1	known	frame_shift_del	c.674	p.V228fs	1.000	NULL	smart_WD40_repeat	-	no_errors	NUP214	HGNC	ENSG00000126883				253	0	0	113	43	27.5641
NUP214	0	genome.wustl.edu	37	9	134073008	134073008	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	9	134073008	134073008	C	-	DEL	NUP214	ENST00000451030	human	ensembl	74_37	+1	known	frame_shift_del	c.4130	p.P1379fs	0.000	NULL	smart_WD40_repeat	-	no_errors	NUP214	HGNC	ENSG00000126883				230	0	0	125	31	19.8718
SNHG7	0	genome.wustl.edu	37	9	139616526	139616526	+	RNA	DEL	G	G	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	9	139616526	139616526	G	-	DEL	SNHG7	ENST00000414282	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SNHG7	HGNC	ENSG00000233016				87	0	0	59	20	25.3165
MAN1B1	0	genome.wustl.edu	37	9	139995548	139995548	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	9	139995548	139995548	G	-	DEL	MAN1B1	ENST00000371589	human	ensembl	74_37	+1	known	frame_shift_del	c.1008	p.L339fs	0.999	pfam_Glyco_hydro_47,superfamily_Glyco_hydro_47,prints_Glyco_hydro_47	pfam_Glyco_hydro_47,superfamily_Glyco_hydro_47,prints_Glyco_hydro_47	-	no_errors	MAN1B1	HGNC	ENSG00000177239				215	0	0	95	31	24.6032
CACNA1B	0	genome.wustl.edu	37	9	141016157	141016157	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	9	141016157	141016157	C	-	DEL	CACNA1B	ENST00000371355	human	ensembl	74_37	+1	known	frame_shift_del	c.6729	p.L2245fs	0.987	NULL	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,pfscan_EF_hand_dom,prints_VDCCAlpha1,prints_VDCC_N_a1su,prints_PKD_2	-	no_errors	CACNA1B	HGNC	ENSG00000148408				96	0	0	57	18	24
PSIP1	0	genome.wustl.edu	37	9	15490046	15490050	+	Frame_Shift_Del	DEL	CTTTT	CTTTT	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	CTTTT	CTTTT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	9	15490046	15490050	CTTTT	-	DEL	PSIP1	ENST00000380733	human	ensembl	74_37	-1	known	frame_shift_del	c.226_222	p.K75fs	1.000:1.000:1.000:1.000:0.999	pfam_PWWP_dom	pfam_LEDGF,pfam_PWWP_dom,smart_PWWP_dom,pfscan_PWWP_dom,prints_Treacle-like_TCS	-	no_errors	PSIP1	HGNC	ENSG00000164985				45	0	0	59	14	19.1781
MLLT3	0	genome.wustl.edu	37	9	20413952	20413952	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	9	20413952	20413952	T	-	DEL	MLLT3	ENST00000380338	human	ensembl	74_37	-1	known	frame_shift_del	c.892	p.R298fs	1.000	NULL	pfam_YEATS,pfscan_YEATS	-	no_errors	MLLT3	HGNC	ENSG00000171843				459	0	0	315	17	5.12048
DNAJA1	0	genome.wustl.edu	37	9	33026949	33026949	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	9	33026949	33026949	T	-	DEL	DNAJA1	ENST00000330899	human	ensembl	74_37	+1	known	frame_shift_del	c.271	p.F92fs	1.000	superfamily_DnaJ_domain	pfam_DnaJ_C,pfam_DnaJ_domain,pfam_HSP_DnaJ_Cys-rich_dom,superfamily_DnaJ_domain,superfamily_HSP40/DnaJ_pept-bd,superfamily_HSP_DnaJ_Cys-rich_dom,smart_DnaJ_domain,pfscan_DnaJ_domain,pfscan_HSP_DnaJ_Cys-rich_dom,prints_DnaJ_domain	-	no_errors	DNAJA1	HGNC	ENSG00000086061				143	0	0	92	28	23.3333
FANCG	0	genome.wustl.edu	37	9	35077347	35077347	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	9	35077347	35077347	G	-	DEL	FANCG	ENST00000378643	human	ensembl	74_37	-1	known	frame_shift_del	c.560	p.P187fs	0.943	superfamily_Sig_transdc_His_kin_Hpt_dom	superfamily_Sig_transdc_His_kin_Hpt_dom,smart_TPR_repeat	-	no_errors	FANCG	HGNC	ENSG00000221829				312	0	0	199	15	7.00935
FAM166B	0	genome.wustl.edu	37	9	35562439	35562439	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	9	35562439	35562439	G	-	DEL	FAM166B	ENST00000447837	human	ensembl	74_37	-1	known	frame_shift_del	c.609	p.T204fs	0.001	NULL	pfam_UPF0573/UPF0605	-	no_errors	FAM166B	HGNC	ENSG00000215187				22	0	0	7	6	46.1538
DOCK8	0	genome.wustl.edu	37	9	405014	405015	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	9	405014	405015	-	T	INS	DOCK8	ENST00000453981	human	ensembl	74_37	+1	known	frame_shift_ins	c.3331_3332	p.M1114fs	1.000:1.000	NULL	pfam_DOCK_C,pfam_DOCK_C/D_N,superfamily_ARM-type_fold	-	no_errors	DOCK8	HGNC	ENSG00000107099				134	1	0.740741	115	10	8
ERMP1	0	genome.wustl.edu	37	9	5801292	5801292	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	9	5801292	5801292	T	-	DEL	ERMP1	ENST00000339450	human	ensembl	74_37	-1	known	frame_shift_del	c.1951	p.T651fs	0.994	NULL	pfam_Peptidase_M28,pfam_Peptidase_M20	-	no_errors	ERMP1	HGNC	ENSG00000099219				126	0	0	54	26	32.5
SPATA31D1	0	genome.wustl.edu	37	9	84608132	84608132	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	9	84608132	84608132	G	-	DEL	SPATA31D1	ENST00000344803	human	ensembl	74_37	+1	known	frame_shift_del	c.2747	p.G917fs	0.000	NULL	NULL	-	no_errors	SPATA31D1	HGNC	ENSG00000214929				86	0	0	45	14	23.7288
DAPK1	0	genome.wustl.edu	37	9	90254368	90254368	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	9	90254368	90254368	A	-	DEL	DAPK1	ENST00000469640	human	ensembl	74_37	+1	known	frame_shift_del	c.523	p.N176fs	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ankyrin_rpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Death_domain,pfam_LipoPS_kinase,pfam_RIO-like_kinase,superfamily_Kinase-like_dom,superfamily_Ankyrin_rpt-contain_dom,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Ankyrin_rpt,smart_Death_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Death_domain,pfscan_Prot_kinase_dom,prints_Ankyrin_rpt	-	no_errors	DAPK1	HGNC	ENSG00000196730				230	0	0	178	13	6.80628
OMD	0	genome.wustl.edu	37	9	95179830	95179830	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	9	95179830	95179830	A	-	DEL	OMD	ENST00000375550	human	ensembl	74_37	-1	known	frame_shift_del	c.11	p.L4fs	0.989	NULL	pfam_Leu-rich_rpt,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	OMD	HGNC	ENSG00000127083				58	0	0	33	8	19.5122
WNK2	0	genome.wustl.edu	37	9	96082789	96082789	+	RNA	DEL	T	T	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	9	96082789	96082789	T	-	DEL	WNK2	ENST00000471076	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	WNK2	HGNC	ENSG00000165238				13	0	0	9	6	40
PHF2	0	genome.wustl.edu	37	9	96422612	96422612	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	9	96422612	96422612	A	-	DEL	PHF2	ENST00000359246	human	ensembl	74_37	+1	known	frame_shift_del	c.1468	p.K492fs	1.000	NULL	pfam_JmjC_dom,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_JmjC_dom,pfscan_JmjC_dom,pfscan_Znf_PHD-finger	-	no_errors	PHF2	HGNC	ENSG00000197724				35	0	0	9	3	25
NUTM2G	0	genome.wustl.edu	37	9	99699450	99699450	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	9	99699450	99699450	C	-	DEL	NUTM2G	ENST00000372322	human	ensembl	74_37	+1	known	frame_shift_del	c.1087	p.P364fs	0.008	NULL	NULL	-	no_errors	NUTM2G	HGNC	ENSG00000188152				169	0	0	119	8	6.29921
BTK	0	genome.wustl.edu	37	X	100608059	100608061	+	RNA	DEL	AAA	AAA	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	AAA	AAA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	X	100608059	100608061	AAA	-	DEL	BTK	ENST00000470069	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.006:0.016:0.023	-	-	-	no_errors	BTK	HGNC	ENSG00000010671				83	0	0	23	7	23.3333
NRK	0	genome.wustl.edu	37	X	105152922	105152923	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	X	105152922	105152923	-	G	INS	NRK	ENST00000428173	human	ensembl	74_37	+1	known	frame_shift_ins	c.1292_1293	p.Q433fs	0.392:0.384	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Citron,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Citron,pfscan_Prot_kinase_dom	-	no_errors	NRK	HGNC	ENSG00000123572				103	0	0	56	14	20
IRS4	0	genome.wustl.edu	37	X	107977802	107977803	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	X	107977802	107977803	-	C	INS	IRS4	ENST00000372129	human	ensembl	74_37	-1	known	frame_shift_ins	c.1773_1772	p.K592fs	0.031:0.016	NULL	pfam_Insln_rcpt_S1,smart_Pleckstrin_homology,smart_Insln_rcpt_S1,pfscan_Pleckstrin_homology,pfscan_Insln_rcpt_S1,prints_Insln_rcpt_S1	-	no_errors	IRS4	HGNC	ENSG00000133124				766	1	0.130378	476	86	15.3025
AGTR2	0	genome.wustl.edu	37	X	115303928	115303928	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	X	115303928	115303928	T	-	DEL	AGTR2	ENST00000371906	human	ensembl	74_37	+1	known	frame_shift_del	c.395	p.F134fs	1.000	pfam_GPCR_Rhodpsn,prints_GPCR_Rhodpsn,prints_ATII_rcpt,prints_Chemokine_rcpt,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,prints_ATII_AT2_rcpt,prints_GPCR_Rhodpsn,prints_ATII_rcpt,prints_Brdyknn_rcpt,prints_Chemokine_rcpt,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	AGTR2	HGNC	ENSG00000180772				687	0	0	375	137	26.7578
ZNF280C	0	genome.wustl.edu	37	X	129370542	129370543	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	X	129370542	129370543	-	T	INS	ZNF280C	ENST00000370978	human	ensembl	74_37	-1	known	frame_shift_ins	c.565_564	p.P188fs	0.805:0.653	NULL	smart_Znf_C2H2-like	-	no_errors	ZNF280C	HGNC	ENSG00000056277				157	0	0	117	8	6.4
HS6ST2	0	genome.wustl.edu	37	X	131762581	131762582	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	X	131762581	131762582	-	A	INS	HS6ST2	ENST00000521489	human	ensembl	74_37	-1	known	frame_shift_ins	c.1608_1607	p.L536fs	1.000:1.000	NULL	pfam_Sulfotransferase,superfamily_P-loop_NTPase	-	no_errors	HS6ST2	HGNC	ENSG00000171004				514	0	0	263	69	20.7831
MOSPD1	0	genome.wustl.edu	37	X	134033048	134033048	+	RNA	DEL	T	T	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	X	134033048	134033048	T	-	DEL	MOSPD1	ENST00000462060	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	MOSPD1	HGNC	ENSG00000101928				163	1	0.609756	83	35	29.661
MAP7D3	0	genome.wustl.edu	37	X	135314194	135314194	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	X	135314194	135314194	G	-	DEL	MAP7D3	ENST00000370663	human	ensembl	74_37	-1	known	frame_shift_del	c.868	p.Q290fs	0.000	NULL	pfam_MAP7	-	no_errors	MAP7D3	HGNC	ENSG00000129680				639	0	0	377	107	22.1074
OFD1	0	genome.wustl.edu	37	X	13778758	13778758	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	X	13778758	13778758	G	-	DEL	OFD1	ENST00000340096	human	ensembl	74_37	+1	known	frame_shift_del	c.2179	p.G728fs	0.000	NULL	superfamily_Lipoprotein_6,smart_LisH_dimerisation,pfscan_LisH_dimerisation	-	no_errors	OFD1	HGNC	ENSG00000046651				238	0	0	121	35	22.4359
OFD1	0	genome.wustl.edu	37	X	13787350	13787350	+	RNA	DEL	T	T	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	X	13787350	13787350	T	-	DEL	OFD1	ENST00000490265	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	OFD1	HGNC	ENSG00000046651				107	1	0.925926	46	19	29.2308
ATP11C	0	genome.wustl.edu	37	X	138864772	138864773	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	X	138864772	138864773	-	T	INS	ATP11C	ENST00000327569	human	ensembl	74_37	-1	known	frame_shift_ins	c.1895_1894	p.M632fs	1.000:0.995	pfam_HAD-like_dom,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,tigrfam_ATPase_P-typ_Plipid-transp	pfam_ATPase_P-typ_transduc_dom_A,pfam_HAD-like_dom,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,tigrfam_ATPase_P-typ_Plipid-transp,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP11C	HGNC	ENSG00000101974				156	0	0	100	30	23.0769
ENSG00000270726	0	genome.wustl.edu	37	X	155255057	155255058	+	RNA	INS	-	-	C			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	X	155255057	155255058	-	C	INS	ENSG00000270726	ENST00000285718	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.069:0.076	-	-	-	no_errors	AJ271736.10	Clone_based_vega_gene	ENSG00000270726				72	0	0	47	6	11.3208
ACE2	0	genome.wustl.edu	37	X	15584646	15584646	+	RNA	DEL	A	A	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	X	15584646	15584646	A	-	DEL	ACE2	ENST00000473851	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ACE2	HGNC	ENSG00000130234				83	0	0	48	7	12.7273
NR0B1	0	genome.wustl.edu	37	X	30326975	30326975	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	X	30326975	30326975	C	-	DEL	NR0B1	ENST00000378970	human	ensembl	74_37	-1	known	frame_shift_del	c.506	p.G169fs	0.002	NULL	pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Nucl_hrmn_rcpt_lig-bd_core,prints_Str_hrmn_rcpt	-	no_errors	NR0B1	HGNC	ENSG00000169297				44	0	0	30	7	18.9189
PRRG1	0	genome.wustl.edu	37	X	37312611	37312611	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	X	37312611	37312611	C	-	DEL	PRRG1	ENST00000378628	human	ensembl	74_37	+1	known	frame_shift_del	c.394	p.P134fs	0.109	NULL	pfam_GLA_domain,superfamily_GLA_domain,smart_GLA_domain,pfscan_GLA_domain,prints_GLA_domain	-	no_errors	PRRG1	HGNC	ENSG00000130962				330	2	0.60241	185	52	21.9409
RPGR	0	genome.wustl.edu	37	X	38144857	38144857	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	X	38144857	38144857	T	-	DEL	RPGR	ENST00000378505	human	ensembl	74_37	-1	known	frame_shift_del	c.3395	p.N1132fs	0.069	NULL	pfam_Reg_chr_condens,superfamily_RCC1/BLIP-II,pfscan_Reg_chr_condens,prints_Reg_chr_condens	-	no_errors	RPGR	HGNC	ENSG00000156313				485	0	0	279	130	31.7848
BCOR	0	genome.wustl.edu	37	X	39923086	39923087	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	X	39923086	39923087	-	T	INS	BCOR	ENST00000378444	human	ensembl	74_37	-1	known	frame_shift_ins	c.3622_3621	p.Q1207fs	1.000:0.999	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	BCOR	HGNC	ENSG00000183337				135	0	0	78	30	27.7778
MED14	0	genome.wustl.edu	37	X	40588606	40588608	+	RNA	DEL	AAA	AAA	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	AAA	AAA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	X	40588606	40588608	AAA	-	DEL	MED14	ENST00000463072	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000:0.000:0.610	-	-	-	no_errors	MED14	HGNC	ENSG00000180182				89	0	0	55	15	21.4286
USP9X	0	genome.wustl.edu	37	X	41055854	41055855	+	Frame_Shift_Del	DEL	AG	AG	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	X	41055854	41055855	AG	-	DEL	USP9X	ENST00000324545	human	ensembl	74_37	+1	known	frame_shift_del	c.4096_4097	p.R1368fs	0.999:1.000	NULL	pfam_Peptidase_C19/C67,superfamily_ARM-type_fold,pfscan_Peptidase_C19/C67	-	no_errors	USP9X	HGNC	ENSG00000124486				191	0	0	123	7	5.38462
SHROOM4	0	genome.wustl.edu	37	X	50345633	50345634	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	X	50345633	50345634	-	T	INS	SHROOM4	ENST00000289292	human	ensembl	74_37	-1	known	frame_shift_ins	c.3942_3941	p.I1315fs	1.000:1.000	pfam_ASD2	pfam_ASD2,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	SHROOM4	HGNC	ENSG00000158352				461	1	0.21645	290	76	20.765
UBQLN2	0	genome.wustl.edu	37	X	56591874	56591874	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	X	56591874	56591874	C	-	DEL	UBQLN2	ENST00000338222	human	ensembl	74_37	+1	known	frame_shift_del	c.1568	p.P525fs	0.175	NULL	pfam_Ubiquitin_dom,pfam_Rad60/SUMO_like,pfam_UBA/Ts_N,superfamily_UBA-like,superfamily_ARM-type_fold,superfamily_XPC-bd,smart_Ubiquitin_dom,smart_STI1_HS-bd,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Ubiquitin_supergroup	-	no_errors	UBQLN2	HGNC	ENSG00000188021				22	0	0	15	8	34.7826
ZC3H12B	0	genome.wustl.edu	37	X	64721671	64721671	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	X	64721671	64721671	A	-	DEL	ZC3H12B	ENST00000338957	human	ensembl	74_37	+1	known	frame_shift_del	c.1093	p.K366fs	1.000	NULL	pfam_RNase_Zc3h12	-	no_errors	ZC3H12B	HGNC	ENSG00000102053				26	0	0	14	4	22.2222
NAP1L2	0	genome.wustl.edu	37	X	72433979	72433979	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	X	72433979	72433979	T	-	DEL	NAP1L2	ENST00000373517	human	ensembl	74_37	-1	known	frame_shift_del	c.350	p.K117fs	1.000	pfam_NAP_family	pfam_NAP_family	-	no_errors	NAP1L2	HGNC	ENSG00000186462				283	0	0	157	47	23.0392
XIST	0	genome.wustl.edu	37	X	73071762	73071762	+	RNA	DEL	A	A	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	X	73071762	73071762	A	-	DEL	XIST	ENST00000429829	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.649	-	-	-	no_errors	XIST	HGNC	ENSG00000229807				179	0	0	90	33	26.8293
KIAA2022	0	genome.wustl.edu	37	X	73960658	73960658	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	X	73960658	73960658	C	-	DEL	KIAA2022	ENST00000055682	human	ensembl	74_37	-1	known	frame_shift_del	c.3734	p.G1245fs	0.055	NULL	NULL	-	no_errors	KIAA2022	HGNC	ENSG00000050030				85	0	0	49	12	19.6721
ATRX	0	genome.wustl.edu	37	X	76763680	76763681	+	RNA	DEL	AA	AA	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	X	76763680	76763681	AA	-	DEL	ATRX	ENST00000480283	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.003:0.001	-	-	-	no_errors	ATRX	HGNC	ENSG00000085224				25	0	0	12	4	25
TNMD	0	genome.wustl.edu	37	X	99854070	99854070	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4361-01A-01D-1158-08	TCGA-BR-4361-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f77aa205-e68f-4aaf-9d3c-29c8f821aa26	53c89408-014c-4e0a-b04d-497c1ce75a51	X	99854070	99854070	A	-	DEL	TNMD	ENST00000373031	human	ensembl	74_37	+1	known	frame_shift_del	c.635	p.216fs	0.000	NULL	pfam_BRICHOS_dom,superfamily_Chitin-bd_1,pfscan_BRICHOS_dom	-	no_errors	TNMD	HGNC	ENSG00000000005				72	0	0	59	8	11.9403
