Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
NTNG1	0	genome.wustl.edu	37	1	107691131	107691131	+	RNA	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	1	107691131	107691131	G	A	SNP	NTNG1	ENST00000462149	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	NTNG1	HGNC	ENSG00000162631				52	0	0	43	11	20.3704
SARS	0	genome.wustl.edu	37	1	109778671	109778671	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	1	109778671	109778671	G	A	SNP	SARS	ENST00000369923	human	ensembl	74_37	+1	known	missense	c.1042	p.A348T	1.000	pfam_aa-tRNA-synt_IIb_cons-dom,pirsf_Ser-tRNA-ligase_type_1,pfscan_aa-tRNA-synth_II,tigrfam_Ser-tRNA-ligase_type_1	pfam_aa-tRNA-synt_IIb_cons-dom,pfam_Ser-tRNA-synth_1_N,superfamily_tRNA-bd_arm,pirsf_Ser-tRNA-ligase_type_1,pfscan_aa-tRNA-synth_II,prints_Ser-tRNA-ligase_type_1,tigrfam_Ser-tRNA-ligase_type_1	-	no_errors	SARS	HGNC	ENSG00000031698				132	0	0	106	37	25.8741
SORT1	0	genome.wustl.edu	37	1	109910092	109910092	+	Silent	SNP	G	G	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	1	109910092	109910092	G	T	SNP	SORT1	ENST00000256637	human	ensembl	74_37	-1	known	silent	c.378	p.V126	1.000	NULL	pfam_BNR_rpt,smart_VPS10	-	no_errors	SORT1	HGNC	ENSG00000134243				208	0	0	150	51	25.3731
GSTM3	0	genome.wustl.edu	37	1	110280341	110280341	+	Silent	SNP	T	T	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	1	110280341	110280341	T	C	SNP	GSTM3	ENST00000256594	human	ensembl	74_37	-1	known	silent	c.405	p.L135	0.176	pfam_GST_C,superfamily_Glutathione-S-Trfase_C-like	pfam_Glutathione_S-Trfase_N,pfam_GST_C,superfamily_Glutathione-S-Trfase_C-like,superfamily_Thioredoxin-like_fold,prints_GST_mu	-	no_errors	GSTM3	HGNC	ENSG00000134202				241	0	0	231	22	8.69565
KCNC4	0	genome.wustl.edu	37	1	110765914	110765914	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	1	110765914	110765914	C	T	SNP	KCNC4	ENST00000369787	human	ensembl	74_37	+1	known	missense	c.1007	p.S336F	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_K_chnl_volt-dep_Kv3_ID,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv3,prints_K_chnl_volt-dep_Kv3.4,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv9	-	no_errors	KCNC4	HGNC	ENSG00000116396				49	0	0	50	11	18.0328
KCNC4	0	genome.wustl.edu	37	1	110766270	110766270	+	Silent	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	1	110766270	110766270	C	T	SNP	KCNC4	ENST00000369787	human	ensembl	74_37	+1	known	silent	c.1363	p.L455	0.999	pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom,prints_K_chnl	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_K_chnl_volt-dep_Kv3_ID,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv3,prints_K_chnl_volt-dep_Kv3.4,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv9	-	no_errors	KCNC4	HGNC	ENSG00000116396				138	0	0	62	29	31.8681
KCNA2	0	genome.wustl.edu	37	1	111147188	111147188	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	1	111147188	111147188	G	A	SNP	KCNA2	ENST00000316361	human	ensembl	74_37	-1	known	nonsense	c.217	p.R73*	1.000	pfam_T1-type_BTB,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl_volt-dep_Kv1	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv1.2,prints_K_chnl_volt-dep_Kv1,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv1.3,prints_2pore_dom_K_chnl,prints_K_chnl_volt-dep_Kv1.1	-	no_errors	KCNA2	HGNC	ENSG00000177301				150	0	0	105	47	30.9211
CHIA	0	genome.wustl.edu	37	1	111858017	111858017	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	1	111858017	111858017	G	A	SNP	CHIA	ENST00000343320	human	ensembl	74_37	+1	known	missense	c.440	p.S147N	1.000	pfam_Glyco_hydro18cat,superfamily_Glycoside_hydrolase_SF,smart_Chitinase_II	pfam_Glyco_hydro18cat,pfam_Chitin-bd_dom,superfamily_Glycoside_hydrolase_SF,superfamily_Chitin-bd_dom,smart_Chitinase_II,smart_Chitin-bd_dom,pfscan_Chitin-bd_dom	-	no_errors	CHIA	HGNC	ENSG00000134216				106	0	0	109	6	5.21739
MTOR	0	genome.wustl.edu	37	1	11300580	11300580	+	Silent	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	1	11300580	11300580	G	A	SNP	MTOR	ENST00000361445	human	ensembl	74_37	-1	known	silent	c.1566	p.Y522	0.571	superfamily_ARM-type_fold	pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,pfam_DUF3385_TOR,pfam_Rapamycin-bd_dom,pfam_FATC,superfamily_ARM-type_fold,superfamily_Kinase-like_dom,superfamily_Rapamycin-bd_dom,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	MTOR	HGNC	ENSG00000198793				170	0	0	107	29	21.3235
WNT2B	0	genome.wustl.edu	37	1	113051996	113051996	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	1	113051996	113051996	C	T	SNP	WNT2B	ENST00000369684	human	ensembl	74_37	+1	known	missense	c.112	p.R38C	0.991	NULL	pfam_Wnt,smart_Wnt,prints_Wnt,prints_Wnt2	-	no_errors	WNT2B	HGNC	ENSG00000134245				32	0	0	22	5	18.5185
LRIG2	0	genome.wustl.edu	37	1	113653186	113653186	+	Splice_Site	SNP	T	T	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	1	113653186	113653186	T	C	SNP	LRIG2	ENST00000361127	human	ensembl	74_37	+1	known	splice_site	c.1798+2	e13+2	1.000	-	-	-	no_errors	LRIG2	HGNC	ENSG00000198799				47	0	0	55	11	16.6667
PTPN22	0	genome.wustl.edu	37	1	114380688	114380688	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	1	114380688	114380688	G	C	SNP	PTPN22	ENST00000359785	human	ensembl	74_37	-1	known	missense	c.1334	p.T445R	0.042	pirsf_Non-rcpt_Tyr_Pase_8/22	pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pirsf_Non-rcpt_Tyr_Pase_8/22,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPN22	HGNC	ENSG00000134242				135	0	0	118	42	26.25
ATP1A1	0	genome.wustl.edu	37	1	116946596	116946596	+	Silent	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	1	116946596	116946596	C	T	SNP	ATP1A1	ENST00000295598	human	ensembl	74_37	+1	known	silent	c.3042	p.G1014	0.990	tigrfam_ATPase_P-typ_Na/K_IIC	pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_cation-transptr_C,pfam_HAD-like_dom,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_P-typ_cyto_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Na/K_IIC,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP1A1	HGNC	ENSG00000163399				146	0	0	116	30	20.5479
PTGFRN	0	genome.wustl.edu	37	1	117484558	117484558	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	1	117484558	117484558	G	A	SNP	PTGFRN	ENST00000393203	human	ensembl	74_37	+1	known	missense	c.271	p.E91K	0.992	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	-	no_errors	PTGFRN	HGNC	ENSG00000134247				40	0	0	35	13	27.0833
GDAP2	0	genome.wustl.edu	37	1	118455209	118455209	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	1	118455209	118455209	C	T	SNP	GDAP2	ENST00000369443	human	ensembl	74_37	-1	known	missense	c.413	p.R138H	1.000	pfam_Macro_dom,smart_Macro_dom,pfscan_Macro_dom	pfam_Macro_dom,superfamily_CRAL-TRIO_dom,smart_Macro_dom,smart_CRAL-TRIO_dom,pfscan_Macro_dom	-	no_errors	GDAP2	HGNC	ENSG00000196505				133	0	0	79	39	33.0508
WARS2	0	genome.wustl.edu	37	1	119575812	119575812	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	1	119575812	119575812	G	A	SNP	WARS2	ENST00000235521	human	ensembl	74_37	-1	known	missense	c.805	p.R269C	0.980	pfam_aa-tRNA-synth_Ic,tigrfam_Trp-tRNA-ligase	pfam_aa-tRNA-synth_Ic,prints_Trp-tRNA-ligase,tigrfam_Trp-tRNA-ligase	-	no_errors	WARS2	HGNC	ENSG00000116874				124	0	0	76	38	33.3333
TNFRSF1B	0	genome.wustl.edu	37	1	12251952	12251952	+	Silent	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	1	12251952	12251952	C	T	SNP	TNFRSF1B	ENST00000376259	human	ensembl	74_37	+1	known	silent	c.429	p.C143	0.002	smart_TNFR/NGFR_Cys_rich_reg,pfscan_TNFR/NGFR_Cys_rich_reg	pfam_TNFR/NGFR_Cys_rich_reg,smart_TNFR/NGFR_Cys_rich_reg,pfscan_TNFR/NGFR_Cys_rich_reg,prints_TNFR_1B	-	no_errors	TNFRSF1B	HGNC	ENSG00000028137				39	0	0	37	9	19.5652
TNFRSF1B	0	genome.wustl.edu	37	1	12262065	12262065	+	Silent	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	1	12262065	12262065	C	T	SNP	TNFRSF1B	ENST00000376259	human	ensembl	74_37	+1	known	silent	c.942	p.P314	0.000	prints_TNFR_1B	pfam_TNFR/NGFR_Cys_rich_reg,smart_TNFR/NGFR_Cys_rich_reg,pfscan_TNFR/NGFR_Cys_rich_reg,prints_TNFR_1B	-	no_errors	TNFRSF1B	HGNC	ENSG00000028137				22	0	0	21	5	19.2308
TAS1R3	0	genome.wustl.edu	37	1	1269811	1269811	+	Silent	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	1	1269811	1269811	C	T	SNP	TAS1R3	ENST00000339381	human	ensembl	74_37	+1	known	silent	c.2526	p.D842	0.000	NULL	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_GPCR_3_9-Cys_dom,superfamily_Peripla_BP_I,pfscan_GPCR_3_C,prints_GPCR_3	-	no_errors	TAS1R3	HGNC	ENSG00000169962				14	0	0	6	5	45.4545
HNRNPCL1	0	genome.wustl.edu	37	1	12907413	12907413	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	1	12907413	12907413	C	A	SNP	HNRNPCL1	ENST00000317869	human	ensembl	74_37	-1	known	missense	c.730	p.A244S	0.193	pirsf_hnRNP_C_Raly	pfam_RRM_dom,smart_RRM_dom,pirsf_hnRNP_C_Raly,pfscan_RRM_dom	-	no_errors	HNRNPCL1	HGNC	ENSG00000179172				246	0	0	200	52	20.6349
PRAMEF22	0	genome.wustl.edu	37	1	13036638	13036638	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	1	13036638	13036638	G	A	SNP	PRAMEF22	ENST00000376187	human	ensembl	74_37	+1	known	missense	c.710	p.R237H	0.002	NULL	NULL	-	no_errors	PRAMEF22	HGNC	ENSG00000204508				286	0	0	213	40	15.8103
BCL9	0	genome.wustl.edu	37	1	147084979	147084979	+	Silent	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	1	147084979	147084979	C	T	SNP	BCL9	ENST00000234739	human	ensembl	74_37	+1	known	silent	c.351	p.N117	1.000	NULL	pfam_BCL9_beta-catenin-bd_dom	-	no_errors	BCL9	HGNC	ENSG00000116128				72	0	0	48	23	32.3944
BCL9	0	genome.wustl.edu	37	1	147086415	147086415	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	1	147086415	147086415	A	G	SNP	BCL9	ENST00000234739	human	ensembl	74_37	+1	known	missense	c.560	p.K187R	1.000	NULL	pfam_BCL9_beta-catenin-bd_dom	-	no_errors	BCL9	HGNC	ENSG00000116128				50	0	0	42	7	14.2857
RORC	0	genome.wustl.edu	37	1	151785595	151785595	+	RNA	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	1	151785595	151785595	G	A	SNP	RORC	ENST00000480719	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RORC	HGNC	ENSG00000143365				48	0	0	38	19	33.3333
HRNR	0	genome.wustl.edu	37	1	152192330	152192330	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	1	152192330	152192330	C	T	SNP	HRNR	ENST00000368801	human	ensembl	74_37	-1	known	missense	c.1775	p.G592E	0.001	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom	-	no_errors	HRNR	HGNC	ENSG00000197915				372	0	0	373	70	15.8014
FLG	0	genome.wustl.edu	37	1	152283080	152283080	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	1	152283080	152283080	G	A	SNP	FLG	ENST00000368799	human	ensembl	74_37	-1	known	missense	c.4282	p.R1428C	0.000	NULL	pfam_Filaggrin,pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom,prints_Filaggrin	-	no_errors	FLG	HGNC	ENSG00000143631				374	0	0	247	100	28.8184
FLG2	0	genome.wustl.edu	37	1	152328128	152328128	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	1	152328128	152328128	T	C	SNP	FLG2	ENST00000388718	human	ensembl	74_37	-1	known	missense	c.2134	p.S712G	0.007	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom,prints_Filaggrin	-	no_errors	FLG2	HGNC	ENSG00000143520				454	0	0	439	89	16.8561
FLG2	0	genome.wustl.edu	37	1	152329376	152329376	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	1	152329376	152329376	T	G	SNP	FLG2	ENST00000388718	human	ensembl	74_37	-1	known	missense	c.886	p.S296R	0.998	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom,prints_Filaggrin	-	no_errors	FLG2	HGNC	ENSG00000143520				357	1	0.27933	311	73	19.0104
LCE1E	0	genome.wustl.edu	37	1	152759779	152759779	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	1	152759779	152759779	T	G	SNP	LCE1E	ENST00000368770	human	ensembl	74_37	+1	known	missense	c.4	p.S2A	1.000	NULL	NULL	-	no_errors	LCE1E	HGNC	ENSG00000186226				343	2	0.57971	230	84	26.7516
CHTOP	0	genome.wustl.edu	37	1	153617558	153617558	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	1	153617558	153617558	G	A	SNP	CHTOP	ENST00000368694	human	ensembl	74_37	+1	known	missense	c.560	p.R187Q	1.000	NULL	NULL	-	no_errors	CHTOP	HGNC	ENSG00000160679				93	0	0	93	27	22.5
DENND4B	0	genome.wustl.edu	37	1	153914361	153914361	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	1	153914361	153914361	G	A	SNP	DENND4B	ENST00000361217	human	ensembl	74_37	-1	known	missense	c.1039	p.R347C	1.000	pfam_DENN_dom,smart_DENN_dom,pfscan_DENN_dom	pfam_DENN_dom,pfam_dDENN_dom,pfam_uDENN_dom,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom	-	no_errors	DENND4B	HGNC	ENSG00000198837				61	0	0	39	14	26.4151
TPM3	0	genome.wustl.edu	37	1	154145237	154145237	+	RNA	SNP	G	G	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	1	154145237	154145237	G	T	SNP	TPM3	ENST00000469717	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	TPM3	HGNC	ENSG00000143549				29	0	0	14	4	22.2222
AQP10	0	genome.wustl.edu	37	1	154294498	154294498	+	Silent	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	1	154294498	154294498	C	T	SNP	AQP10	ENST00000324978	human	ensembl	74_37	+1	known	silent	c.195	p.A65	0.621	pfam_MIP,superfamily_Aquaporin-like,prints_MIP,tigrfam_MIP	pfam_MIP,superfamily_Aquaporin-like,prints_MIP,prints_Aquaporin_10,prints_Aquaporin_3,tigrfam_MIP	-	no_errors	AQP10	HGNC	ENSG00000143595				34	0	0	32	9	21.9512
ADAR	0	genome.wustl.edu	37	1	154562368	154562368	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	1	154562368	154562368	C	T	SNP	ADAR	ENST00000292205	human	ensembl	74_37	-1	known	missense	c.2662	p.A888T	1.000	smart_A_deamin	pfam_A_deamin,pfam_dsRNA_A_deaminase,pfam_dsRNA-bd_dom,smart_dsRNA_A_deaminase,smart_dsRNA-bd_dom,smart_A_deamin,pfscan_dsRNA-bd_dom,pfscan_dsRNA_A_deaminase,pfscan_A_deamin	-	no_errors	ADAR	HGNC	ENSG00000160710				50	0	0	34	3	8.10811
ZBTB7B	0	genome.wustl.edu	37	1	154987252	154987252	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	1	154987252	154987252	G	A	SNP	ZBTB7B	ENST00000417934	human	ensembl	74_37	+1	known	missense	c.218	p.R73Q	1.000	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like	pfam_BTB_POZ,pfam_Znf_C2H2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB7B	HGNC	ENSG00000160685				100	0	0	105	34	24.4604
DCST2	0	genome.wustl.edu	37	1	154998843	154998843	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	1	154998843	154998843	A	T	SNP	DCST2	ENST00000368424	human	ensembl	74_37	-1	known	missense	c.1546	p.F516I	0.925	pfam_DC_STAMP-like	pfam_DC_STAMP-like	-	no_errors	DCST2	HGNC	ENSG00000163354				72	0	0	105	9	7.89474
TRIM46	0	genome.wustl.edu	37	1	155152138	155152138	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	1	155152138	155152138	G	A	SNP	TRIM46	ENST00000334634	human	ensembl	74_37	+1	known	missense	c.1316	p.R439H	1.000	superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_Fibronectin_type3,superfamily_ConA-like_lec_gl_sf,smart_Znf_RING,smart_Znf_B-box,pfscan_B30.2/SPRY,pfscan_Fibronectin_type3,pfscan_Znf_B-box	-	no_errors	TRIM46	HGNC	ENSG00000163462				46	0	0	32	10	23.8095
RUSC1	0	genome.wustl.edu	37	1	155300265	155300265	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	1	155300265	155300265	T	C	SNP	RUSC1	ENST00000368352	human	ensembl	74_37	+1	known	missense	c.2612	p.L871P	1.000	pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	pfam_Run,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_Run,smart_SH3_domain,pfscan_Run,pfscan_SH3_domain	-	no_errors	RUSC1	HGNC	ENSG00000160753				74	0	0	36	14	28
DAP3	0	genome.wustl.edu	37	1	155707980	155707980	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	1	155707980	155707980	T	C	SNP	DAP3	ENST00000343043	human	ensembl	74_37	+1	known	missense	c.1144	p.F382L	0.993	pfam_Ribosomal_S23/S29_mit,superfamily_P-loop_NTPase	pfam_Ribosomal_S23/S29_mit,superfamily_P-loop_NTPase,prints_Ribosomal_S29_mit	-	no_errors	DAP3	HGNC	ENSG00000132676				65	0	0	36	12	25
APOA1BP	0	genome.wustl.edu	37	1	156562003	156562003	+	Splice_Site	SNP	T	T	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	1	156562003	156562003	T	G	SNP	APOA1BP	ENST00000368235	human	ensembl	74_37	+1	known	splice_site	c.291+2	e2+2	0.982	-	-	-	no_errors	APOA1BP	HGNC	ENSG00000163382				87	0	0	72	7	8.86076
FCRL5	0	genome.wustl.edu	37	1	157491151	157491151	+	RNA	SNP	T	T	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	1	157491151	157491151	T	A	SNP	FCRL5	ENST00000461387	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	FCRL5	HGNC	ENSG00000143297				23	0	0	13	5	27.7778
FCRL1	0	genome.wustl.edu	37	1	157772072	157772072	+	RNA	SNP	T	T	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	1	157772072	157772072	T	G	SNP	FCRL1	ENST00000489998	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.006	-	-	-	no_errors	FCRL1	HGNC	ENSG00000163534				97	0	0	47	24	33.8028
FCER1A	0	genome.wustl.edu	37	1	159277558	159277558	+	Silent	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	1	159277558	159277558	C	T	SNP	FCER1A	ENST00000368115	human	ensembl	74_37	+1	known	silent	c.610	p.L204	0.003	NULL	pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	FCER1A	HGNC	ENSG00000179639				152	0	0	125	51	28.9773
KCNJ10	0	genome.wustl.edu	37	1	160012141	160012141	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	1	160012141	160012141	T	C	SNP	KCNJ10	ENST00000368089	human	ensembl	74_37	-1	known	missense	c.182	p.D61G	1.000	pfam_K_chnl_inward-rec_Kir,pirsf_K_chnl_inward-rec_Kir	pfam_K_chnl_inward-rec_Kir,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir1.2,prints_K_chnl_inward-rec_Kir1.1	-	no_errors	KCNJ10	HGNC	ENSG00000177807				179	0	0	125	37	22.8395
ATP1A2	0	genome.wustl.edu	37	1	160098475	160098475	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	1	160098475	160098475	C	T	SNP	ATP1A2	ENST00000361216	human	ensembl	74_37	+1	known	missense	c.1051	p.R351W	0.979	pfam_ATPase_P-typ_transduc_dom_A,tigrfam_ATPase_P-typ_Na/K_IIC,tigrfam_Cation_transp_P_typ_ATPase	pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_cation-transptr_C,pfam_HAD-like_dom,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_P-typ_cyto_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Na/K_IIC,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP1A2	HGNC	ENSG00000018625				125	0	0	96	46	32.3944
NCSTN	0	genome.wustl.edu	37	1	160326990	160326990	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	1	160326990	160326990	C	T	SNP	NCSTN	ENST00000294785	human	ensembl	74_37	+1	known	missense	c.1954	p.R652C	1.000	NULL	pfam_Nicastrin	-	no_errors	NCSTN	HGNC	ENSG00000162736				51	0	0	32	11	25.5814
SPEN	0	genome.wustl.edu	37	1	16256980	16256980	+	Silent	SNP	A	A	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	1	16256980	16256980	A	G	SNP	SPEN	ENST00000375759	human	ensembl	74_37	+1	known	silent	c.4245	p.L1415	0.821	NULL	pfam_RRM_dom,pfam_SPOC_C,superfamily_SPOC_like_C_dom,smart_RRM_dom,pfscan_SPOC_met,pfscan_RRM_dom	-	no_errors	SPEN	HGNC	ENSG00000065526				157	0	0	125	9	6.71642
CLCNKB	0	genome.wustl.edu	37	1	16380237	16380237	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	1	16380237	16380237	G	A	SNP	CLCNKB	ENST00000375679	human	ensembl	74_37	+1	known	missense	c.1726	p.V576M	0.000	pfam_CBS_dom,smart_CBS_dom	pfam_Cl-channel_volt-gated,pfam_CBS_dom,superfamily_Cl-channel_core,smart_CBS_dom,prints_Cl-channel_volt-gated,prints_Cl_channel-K	-	no_errors	CLCNKB	HGNC	ENSG00000184908				61	0	0	42	18	30
RSG1	0	genome.wustl.edu	37	1	16560163	16560163	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	1	16560163	16560163	G	A	SNP	RSG1	ENST00000375599	human	ensembl	74_37	-1	known	missense	c.209	p.A70V	0.764	pfam_MIRO-like,pfam_Small_GTPase,superfamily_P-loop_NTPase,prints_Small_GTPase	pfam_MIRO-like,pfam_Small_GTPase,superfamily_P-loop_NTPase,prints_Small_GTPase	-	no_errors	RSG1	HGNC	ENSG00000132881				160	0	0	115	48	29.4479
ILDR2	0	genome.wustl.edu	37	1	166890449	166890449	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	1	166890449	166890449	G	A	SNP	ILDR2	ENST00000271417	human	ensembl	74_37	-1	known	missense	c.1379	p.S460L	0.623	NULL	pfam_LISCH7,smart_Ig_sub	-	no_errors	ILDR2	HGNC	ENSG00000143195				18	0	0	7	4	36.3636
GPA33	0	genome.wustl.edu	37	1	167023552	167023552	+	RNA	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	1	167023552	167023552	G	A	SNP	GPA33	ENST00000527955	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	GPA33	HGNC	ENSG00000143167				130	0	0	91	44	32.5926
DUSP27	0	genome.wustl.edu	37	1	167095702	167095702	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	1	167095702	167095702	G	A	SNP	DUSP27	ENST00000271385	human	ensembl	74_37	+1	known	missense	c.1334	p.S445N	0.937	NULL	pfam_Dual-sp_phosphatase_cat-dom,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Tyr/Dual-sp_Pase,pfscan_Dual-sp_phosphatase_subgr_cat,prints_Atypical_DUSP,prints_Atypical_DUSP_famA	-	no_errors	DUSP27	HGNC	ENSG00000198842				13	0	0	6	4	40
CD247	0	genome.wustl.edu	37	1	167408619	167408619	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	1	167408619	167408619	C	T	SNP	CD247	ENST00000362089	human	ensembl	74_37	-1	known	missense	c.181	p.A61T	0.000	pfscan_Phos_immunorcpt_sig_ITAM	pfam_Phos_immunorcpt_sig_ITAM,pfam_CR3_zeta/IgE_Fc_rcpt_gamma,smart_Phos_immunorcpt_sig_ITAM,pfscan_Phos_immunorcpt_sig_ITAM	-	no_errors	CD247	HGNC	ENSG00000198821				110	0	0	74	25	25.2525
NCF2	0	genome.wustl.edu	37	1	183534900	183534900	+	Silent	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	1	183534900	183534900	C	T	SNP	NCF2	ENST00000367535	human	ensembl	74_37	-1	known	silent	c.939	p.P313	0.000	superfamily_SH3_domain	pfam_SH3_domain,pfam_SH3_2,pfam_TPR_1,pfam_OPR_PB1,superfamily_SH3_domain,smart_TPR_repeat,smart_SH3_domain,smart_OPR_PB1,pfscan_SH3_domain,pfscan_TPR_repeat,pfscan_TPR-contain_dom,prints_p67phox,prints_SH3_domain	-	no_errors	NCF2	HGNC	ENSG00000116701				106	0	0	105	6	5.40541
HMCN1	0	genome.wustl.edu	37	1	185931759	185931759	+	Silent	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	1	185931759	185931759	C	T	SNP	HMCN1	ENST00000271588	human	ensembl	74_37	+1	known	silent	c.1938	p.T646	0.011	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_G2_nidogen/fibulin_G2F,pfam_EGF-like_Ca-bd_dom,pfam_Thrombospondin_1_rpt,superfamily_GFP,superfamily_Thrombospondin_1_rpt,superfamily_Growth_fac_rcpt_N_dom,superfamily_Cadherin-like,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Thrombospondin_1_rpt,smart_G2_nidogen/fibulin_G2F,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_G2_nidogen/fibulin_G2F,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like_dom	-	no_errors	HMCN1	HGNC	ENSG00000143341				227	0	0	157	68	30.2222
RGS21	0	genome.wustl.edu	37	1	192316502	192316502	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	1	192316502	192316502	C	T	SNP	RGS21	ENST00000417209	human	ensembl	74_37	+1	known	missense	c.71	p.T24M	0.986	pfam_RGS_dom,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal_superfam,pfscan_Regulat_G_prot_signal_superfam,prints_RGS_dom	pfam_RGS_dom,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal_superfam,pfscan_Regulat_G_prot_signal_superfam,prints_RGS_dom	-	no_errors	RGS21	HGNC	ENSG00000253148				164	1	0.606061	108	27	20
UBR4	0	genome.wustl.edu	37	1	19473420	19473420	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	1	19473420	19473420	C	A	SNP	UBR4	ENST00000375267	human	ensembl	74_37	-1	known	missense	c.7704	p.E2568D	1.000	superfamily_ARM-type_fold	superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_Znf_N-recognin_met,pfscan_Znf_N-recognin	-	no_errors	UBR4	HGNC	ENSG00000127481				365	1	0.273224	262	68	20.6061
AKR7A3	0	genome.wustl.edu	37	1	19610525	19610525	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	1	19610525	19610525	T	C	SNP	AKR7A3	ENST00000361640	human	ensembl	74_37	-1	known	missense	c.799	p.T267A	0.988	pfam_NADP_OxRdtase_dom,superfamily_NADP_OxRdtase_dom	pfam_NADP_OxRdtase_dom,superfamily_NADP_OxRdtase_dom	-	no_errors	AKR7A3	HGNC	ENSG00000162482				83	0	0	71	10	12.3457
AKR7A3	0	genome.wustl.edu	37	1	19610544	19610544	+	Silent	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	1	19610544	19610544	G	A	SNP	AKR7A3	ENST00000361640	human	ensembl	74_37	-1	known	silent	c.780	p.A260	0.960	pfam_NADP_OxRdtase_dom,superfamily_NADP_OxRdtase_dom	pfam_NADP_OxRdtase_dom,superfamily_NADP_OxRdtase_dom	-	no_errors	AKR7A3	HGNC	ENSG00000162482				91	0	0	74	19	20.4301
CRB1	0	genome.wustl.edu	37	1	197390150	197390150	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	1	197390150	197390150	G	A	SNP	CRB1	ENST00000367400	human	ensembl	74_37	+1	known	missense	c.1192	p.V398I	0.901	smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom	pfam_EG-like_dom,pfam_Laminin_G,pfam_EGF_extracell,pfam_EGF-like_Ca-bd_dom,superfamily_ConA-like_lec_gl_sf,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	CRB1	HGNC	ENSG00000134376				186	0	0	125	44	26.0355
KIF21B	0	genome.wustl.edu	37	1	200946499	200946499	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	1	200946499	200946499	G	A	SNP	KIF21B	ENST00000422435	human	ensembl	74_37	-1	known	missense	c.4166	p.S1389L	1.000	superfamily_WD40_repeat_dom,pfscan_WD40_repeat_dom	pfam_Kinesin_motor_dom,pfam_WD40_repeat,superfamily_P-loop_NTPase,superfamily_WD40_repeat_dom,superfamily_Prefoldin,smart_Kinesin_motor_dom,smart_WD40_repeat,pfscan_Kinesin_motor_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Kinesin_motor_dom	-	no_errors	KIF21B	HGNC	ENSG00000116852				73	0	0	61	21	25.6098
TMCO4	0	genome.wustl.edu	37	1	20097887	20097887	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	1	20097887	20097887	C	T	SNP	TMCO4	ENST00000294543	human	ensembl	74_37	-1	known	missense	c.268	p.G90S	0.977	NULL	pfam_DUF726,pfam_DUF900_hydrolase	-	no_errors	TMCO4	HGNC	ENSG00000162542				90	0	0	75	12	13.7931
PKP1	0	genome.wustl.edu	37	1	201282591	201282591	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	1	201282591	201282591	C	T	SNP	PKP1	ENST00000263946	human	ensembl	74_37	+1	known	missense	c.604	p.R202C	0.825	NULL	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	PKP1	HGNC	ENSG00000081277				24	0	0	10	6	37.5
NAV1	0	genome.wustl.edu	37	1	201781716	201781716	+	Silent	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	1	201781716	201781716	C	T	SNP	NAV1	ENST00000367296	human	ensembl	74_37	+1	known	silent	c.5148	p.L1716	0.847	NULL	superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	NAV1	HGNC	ENSG00000134369				161	1	0.617284	141	49	25.7895
RNPEP	0	genome.wustl.edu	37	1	201958135	201958135	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	1	201958135	201958135	C	T	SNP	RNPEP	ENST00000295640	human	ensembl	74_37	+1	known	missense	c.551	p.T184M	1.000	pfam_Peptidase_M1_N,prints_Peptidase_M1_N	pfam_Peptidase_M1_N,pfam_Peptidase_M1_C,superfamily_ARM-type_fold,prints_Peptidase_M1_N	-	no_errors	RNPEP	HGNC	ENSG00000176393				224	0	0	151	46	23.3503
TMEM183A	0	genome.wustl.edu	37	1	202992114	202992114	+	Silent	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	1	202992114	202992114	C	T	SNP	TMEM183A	ENST00000367242	human	ensembl	74_37	+1	known	silent	c.1077	p.S359	0.526	NULL	superfamily_F-box_dom	-	no_errors	TMEM183A	HGNC	ENSG00000163444				63	0	0	50	28	35.8974
MYOG	0	genome.wustl.edu	37	1	203054894	203054894	+	Silent	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	1	203054894	203054894	G	A	SNP	MYOG	ENST00000241651	human	ensembl	74_37	-1	known	silent	c.196	p.L66	1.000	pfam_Basic,smart_Basic	pfam_Basic,pfam_bHLH_dom,superfamily_bHLH_dom,smart_Basic,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	MYOG	HGNC	ENSG00000122180				150	0	0	120	34	22.0779
SNRPE	0	genome.wustl.edu	37	1	203830822	203830822	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	1	203830822	203830822	A	C	SNP	SNRPE	ENST00000414487	human	ensembl	74_37	+1	known	missense	c.35	p.K12T	1.000	NULL	pfam_Ribonucl_LSM,superfamily_LSM_dom,smart_Ribonucl_LSM_euk/arc	-	no_errors	SNRPE	HGNC	ENSG00000182004				73	0	0	66	5	7.04225
DSTYK	0	genome.wustl.edu	37	1	205119814	205119814	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	1	205119814	205119814	A	G	SNP	DSTYK	ENST00000367162	human	ensembl	74_37	-1	known	missense	c.2461	p.F821L	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	DSTYK	HGNC	ENSG00000133059				146	0	0	93	34	26.7717
CTSE	0	genome.wustl.edu	37	1	206328829	206328829	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	1	206328829	206328829	A	G	SNP	CTSE	ENST00000361052	human	ensembl	74_37	+1	known	missense	c.911	p.N304S	0.000	pfam_Aspartic_peptidase,superfamily_Peptidase_aspartic_dom	pfam_Aspartic_peptidase,pfam_Aspartic_peptidase_N,superfamily_Peptidase_aspartic_dom,prints_Aspartic_peptidase	-	no_errors	CTSE	HGNC	ENSG00000196188				85	0	0	63	16	20.2532
IL10	0	genome.wustl.edu	37	1	206944526	206944526	+	RNA	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	1	206944526	206944526	G	A	SNP	IL10	ENST00000471071	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	IL10	HGNC	ENSG00000136634				31	0	0	29	7	19.4444
PLXNA2	0	genome.wustl.edu	37	1	208205091	208205091	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	1	208205091	208205091	T	G	SNP	PLXNA2	ENST00000367033	human	ensembl	74_37	-1	known	missense	c.5069	p.K1690T	1.000	pfam_Plexin_cytoplasmic_RasGAP_dom,superfamily_Rho_GTPase_activation_prot	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_Semap_dom,pfam_IPT,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_IPT,pfscan_Semap_dom	-	no_errors	PLXNA2	HGNC	ENSG00000076356				80	0	0	61	25	29.0698
PLXNA2	0	genome.wustl.edu	37	1	208269412	208269412	+	Silent	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	1	208269412	208269412	G	A	SNP	PLXNA2	ENST00000367033	human	ensembl	74_37	-1	known	silent	c.1944	p.S648	1.000	NULL	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_Semap_dom,pfam_IPT,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_IPT,pfscan_Semap_dom	-	no_errors	PLXNA2	HGNC	ENSG00000076356				573	0	0	423	144	25.3968
PINK1	0	genome.wustl.edu	37	1	20971112	20971112	+	Silent	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	1	20971112	20971112	C	T	SNP	PINK1	ENST00000321556	human	ensembl	74_37	+1	known	silent	c.906	p.R302	0.001	pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	PINK1	HGNC	ENSG00000158828				144	0	0	98	33	25.1908
KIF17	0	genome.wustl.edu	37	1	21031369	21031369	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	1	21031369	21031369	G	A	SNP	KIF17	ENST00000247986	human	ensembl	74_37	-1	known	missense	c.694	p.R232W	1.000	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF17	HGNC	ENSG00000117245				91	0	0	58	31	34.8315
HHAT	0	genome.wustl.edu	37	1	210686512	210686512	+	Silent	SNP	A	A	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	1	210686512	210686512	A	G	SNP	HHAT	ENST00000391905	human	ensembl	74_37	+1	known	silent	c.1023	p.G341	0.994	pfam_MBOAT_fam	pfam_MBOAT_fam	-	no_errors	HHAT	HGNC	ENSG00000054392				40	0	0	33	9	21.4286
RCOR3	0	genome.wustl.edu	37	1	211486764	211486764	+	Splice_Site	SNP	A	A	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	1	211486764	211486764	A	G	SNP	RCOR3	ENST00000367005	human	ensembl	74_37	+1	known	splice_site	c.1144-2	e11-2	1.000	-	-	-	no_errors	RCOR3	HGNC	ENSG00000117625				122	0	0	100	10	9.09091
PTPN14	0	genome.wustl.edu	37	1	214557016	214557016	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	1	214557016	214557016	G	A	SNP	PTPN14	ENST00000366956	human	ensembl	74_37	-1	known	missense	c.2182	p.R728W	0.581	pirsf_Tyr_Pase_non-rcpt_typ-14/21	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_FERM_central,pfam_FERM_N,pfam_FERM_PH-like_C,pfam_Dual-sp_phosphatase_cat-dom,superfamily_FERM_central,smart_Band_41_domain,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pirsf_Tyr_Pase_non-rcpt_typ-14/21,pfscan_FERM_domain,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt,prints_Band_41_fam	-	no_errors	PTPN14	HGNC	ENSG00000152104				74	0	0	51	20	28.169
PTPN14	0	genome.wustl.edu	37	1	214575076	214575076	+	Silent	SNP	A	A	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	1	214575076	214575076	A	G	SNP	PTPN14	ENST00000366956	human	ensembl	74_37	-1	known	silent	c.621	p.N207	0.827	pfam_FERM_central,superfamily_FERM_central,smart_Band_41_domain,pirsf_Tyr_Pase_non-rcpt_typ-14/21,pfscan_FERM_domain,prints_Band_41_fam	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_FERM_central,pfam_FERM_N,pfam_FERM_PH-like_C,pfam_Dual-sp_phosphatase_cat-dom,superfamily_FERM_central,smart_Band_41_domain,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pirsf_Tyr_Pase_non-rcpt_typ-14/21,pfscan_FERM_domain,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt,prints_Band_41_fam	-	no_errors	PTPN14	HGNC	ENSG00000152104				190	1	0.52356	148	48	24.4898
USH2A	0	genome.wustl.edu	37	1	216465672	216465672	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	1	216465672	216465672	C	T	SNP	USH2A	ENST00000366943	human	ensembl	74_37	-1	known	missense	c.1685	p.R562H	0.928	smart_EGF_laminin	pfam_Fibronectin_type3,pfam_EGF_laminin,pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_LamG-like,smart_Laminin_N,smart_EGF_laminin,smart_Fibronectin_type3,smart_Laminin_G,pfscan_EGF_laminin,pfscan_Fibronectin_type3,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	USH2A	HGNC	ENSG00000042781				103	0	0	81	28	25.6881
LYPLAL1	0	genome.wustl.edu	37	1	219366532	219366532	+	Silent	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	1	219366532	219366532	G	A	SNP	LYPLAL1	ENST00000366928	human	ensembl	74_37	+1	known	silent	c.300	p.V100	0.739	pfam_PLipase/COase/thioEstase,pfam_Esterase_put	pfam_PLipase/COase/thioEstase,pfam_Dienelactn_hydro,pfam_Esterase_put	-	no_errors	LYPLAL1	HGNC	ENSG00000143353				53	0	0	29	15	34.0909
IARS2	0	genome.wustl.edu	37	1	220279373	220279373	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	1	220279373	220279373	G	A	SNP	IARS2	ENST00000302637	human	ensembl	74_37	+1	known	missense	c.1207	p.G403S	1.000	pfam_aa-tRNA-synth_Ia,superfamily_Val/Leu/Ile-tRNA-synth_edit,tigrfam_Ile-tRNA-ligase	pfam_aa-tRNA-synth_Ia,pfam_V/L/I-tRNA-synth_anticodon-bd,pfam_Methionyl/Leucyl_tRNA_Synth,pfam_Znf_DNA_glyclase/IsotRNA_synth,superfamily_tRNAsynth_1a_anticodon-bd,superfamily_Val/Leu/Ile-tRNA-synth_edit,prints_Ile-tRNA-ligase,tigrfam_Ile-tRNA-ligase	-	no_errors	IARS2	HGNC	ENSG00000067704				144	0	0	88	39	30.7087
RAB3GAP2	0	genome.wustl.edu	37	1	220364615	220364615	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	1	220364615	220364615	C	T	SNP	RAB3GAP2	ENST00000358951	human	ensembl	74_37	-1	known	missense	c.1282	p.A428T	1.000	superfamily_WD40_repeat_dom	superfamily_WD40_repeat_dom	-	no_errors	RAB3GAP2	HGNC	ENSG00000118873				46	0	0	29	12	29.2683
HLX	0	genome.wustl.edu	37	1	221057685	221057685	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	1	221057685	221057685	G	A	SNP	HLX	ENST00000366903	human	ensembl	74_37	+1	known	missense	c.1106	p.R369H	1.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_HTH_motif,prints_Homeobox_metazoa	-	no_errors	HLX	HGNC	ENSG00000136630				41	0	0	32	12	27.2727
HSPG2	0	genome.wustl.edu	37	1	22191363	22191363	+	Silent	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	1	22191363	22191363	C	T	SNP	HSPG2	ENST00000374695	human	ensembl	74_37	-1	known	silent	c.4599	p.P1533	0.929	pfam_EGF_laminin,smart_EGF_laminin	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Laminin_G,pfam_Laminin_B_type_IV,pfam_EGF_laminin,pfam_LDrepeatLR_classA_rpt,pfam_EG-like_dom,superfamily_ConA-like_lec_gl_sf,superfamily_LDrepeatLR_classA_rpt,smart_SEA_dom,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Laminin_B_subgr,smart_EGF_laminin,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_LDrepeatLR_classA_rpt,pfscan_SEA_dom,pfscan_Ig-like_dom,prints_LDrepeatLR_classA_rpt	-	no_errors	HSPG2	HGNC	ENSG00000142798				17	0	0	20	5	20
C1orf65	0	genome.wustl.edu	37	1	223567946	223567946	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	1	223567946	223567946	C	T	SNP	C1orf65	ENST00000366875	human	ensembl	74_37	+1	known	missense	c.1129	p.R377W	0.077	NULL	NULL	-	no_errors	C1orf65	HGNC	ENSG00000178395				23	0	0	22	6	21.4286
TMEM63A	0	genome.wustl.edu	37	1	226037670	226037670	+	Silent	SNP	A	A	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	1	226037670	226037670	A	G	SNP	TMEM63A	ENST00000366835	human	ensembl	74_37	-1	known	silent	c.2014	p.L672	1.000	pfam_DUF221	pfam_DUF221	-	no_errors	TMEM63A	HGNC	ENSG00000196187				117	0	0	117	9	7.14286
TMEM63A	0	genome.wustl.edu	37	1	226053597	226053597	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	1	226053597	226053597	C	T	SNP	TMEM63A	ENST00000366835	human	ensembl	74_37	-1	known	missense	c.746	p.R249Q	1.000	NULL	pfam_DUF221	-	no_errors	TMEM63A	HGNC	ENSG00000196187				52	0	0	18	8	30.7692
ARF1	0	genome.wustl.edu	37	1	228285737	228285737	+	RNA	SNP	T	T	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	1	228285737	228285737	T	A	SNP	ARF1	ENST00000470558	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.255	-	-	-	no_errors	ARF1	HGNC	ENSG00000143761				58	0	0	44	16	26.6667
OBSCN	0	genome.wustl.edu	37	1	228401921	228401921	+	Silent	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	1	228401921	228401921	C	T	SNP	OBSCN	ENST00000422127	human	ensembl	74_37	+1	known	silent	c.1305	p.G435	0.917	smart_Ig_sub	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,pfam_DH-domain,pfam_IQ_motif_EF-hand-BS,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_Fibronectin_type3,superfamily_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_IQ_motif_EF-hand-BS,smart_DH-domain,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,pfscan_DH-domain	-	no_errors	OBSCN	HGNC	ENSG00000154358				119	1	0.833333	82	20	19.6078
TAF5L	0	genome.wustl.edu	37	1	229737984	229737984	+	Silent	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	1	229737984	229737984	G	A	SNP	TAF5L	ENST00000258281	human	ensembl	74_37	-1	known	silent	c.930	p.D310	1.000	superfamily_WD40_repeat_dom	pfam_WD40_repeat,pfam_TFIID-su_WD40-assoc_reg,superfamily_WD40_repeat_dom,smart_WD40_repeat,prints_G-protein_beta_WD-40_rep,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	TAF5L	HGNC	ENSG00000135801				61	0	0	53	14	20.8955
AGT	0	genome.wustl.edu	37	1	230846080	230846080	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	1	230846080	230846080	A	G	SNP	AGT	ENST00000366667	human	ensembl	74_37	-1	known	missense	c.517	p.S173P	0.989	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom,prints_Angiotensinogen	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom,prints_Angiotensinogen	-	no_errors	AGT	HGNC	ENSG00000135744				81	0	0	74	4	5.12821
LYST	0	genome.wustl.edu	37	1	235909731	235909731	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	1	235909731	235909731	A	G	SNP	LYST	ENST00000389793	human	ensembl	74_37	-1	known	missense	c.7877	p.M2626T	1.000	superfamily_ARM-type_fold	pfam_BEACH_dom,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	LYST	HGNC	ENSG00000143669				86	0	0	68	20	22.7273
HEATR1	0	genome.wustl.edu	37	1	236730088	236730088	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	1	236730088	236730088	T	C	SNP	HEATR1	ENST00000366582	human	ensembl	74_37	-1	known	missense	c.4166	p.H1389R	1.000	superfamily_ARM-type_fold	pfam_BP28_C_dom,pfam_U3snoRNP10,superfamily_ARM-type_fold	-	no_errors	HEATR1	HGNC	ENSG00000119285				95	0	0	56	13	18.8406
ACTN2	0	genome.wustl.edu	37	1	236906269	236906269	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	1	236906269	236906269	G	A	SNP	ACTN2	ENST00000366578	human	ensembl	74_37	+1	known	missense	c.1181	p.R394Q	1.000	NULL	pfam_Spectrin_repeat,pfam_CH-domain,pfam_EF-hand_Ca_insen,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_EF_hand_dom,pfscan_CH-domain,pfscan_EF_hand_dom	-	no_errors	ACTN2	HGNC	ENSG00000077522				78	0	0	71	26	26.8041
RYR2	0	genome.wustl.edu	37	1	237947929	237947929	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	1	237947929	237947929	T	C	SNP	RYR2	ENST00000360064	human	ensembl	74_37	+1	known	missense	c.12935	p.F4312S	0.003	NULL	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ConA-like_lec_gl_sf,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_hand_dom,pfscan_MIR_motif	-	no_errors	RYR2	HGNC	ENSG00000198626				72	0	0	65	16	19.7531
GREM2	0	genome.wustl.edu	37	1	240656299	240656299	+	Silent	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	1	240656299	240656299	G	A	SNP	GREM2	ENST00000318160	human	ensembl	74_37	-1	known	silent	c.477	p.S159	0.293	pfam_DAN,pfam_Cys_knot,smart_Cys_knot_C,pirsf_Gremlin_precursor,pfscan_Cys_knot_C	pfam_DAN,pfam_Cys_knot,smart_Cys_knot_C,pirsf_Gremlin_precursor,pfscan_Cys_knot_C	-	no_errors	GREM2	HGNC	ENSG00000180875				88	0	0	58	26	30.9524
PLCH2	0	genome.wustl.edu	37	1	2411332	2411332	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	1	2411332	2411332	G	A	SNP	PLCH2	ENST00000378486	human	ensembl	74_37	+1	known	missense	c.431	p.R144H	0.968	smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,pfam_C2_dom,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_dom,smart_Pleckstrin_homology,smart_EF_hand_dom,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_dom,pfscan_EF_hand_dom,pfscan_C2_dom,pfscan_Pleckstrin_homology,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y,prints_Pinositol_PLipase_C	-	no_errors	PLCH2	HGNC	ENSG00000149527				36	0	0	14	7	33.3333
FH	0	genome.wustl.edu	37	1	241680541	241680541	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	1	241680541	241680541	C	T	SNP	FH	ENST00000366560	human	ensembl	74_37	-1	known	missense	c.208	p.A70T	0.996	pfam_Fumarate_lyase_N,superfamily_L-Aspartase-like,tigrfam_Fum_hydII	pfam_Fumarate_lyase_N,pfam_Fumarase_C_C,superfamily_L-Aspartase-like,prints_Fumarate_lyase_fam,tigrfam_Fum_hydII	-	no_errors	FH	HGNC	ENSG00000091483				115	0	0	87	32	26.8908
OR2T6	0	genome.wustl.edu	37	1	248550915	248550915	+	Silent	SNP	T	T	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	1	248550915	248550915	T	C	SNP	OR2T6	ENST00000355728	human	ensembl	74_37	+1	known	silent	c.6	p.N2	0.007	NULL	pfam_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	OR2T6	HGNC	ENSG00000198104				115	0	0	100	34	25.3731
OR2T1	0	genome.wustl.edu	37	1	248569514	248569514	+	Silent	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	1	248569514	248569514	C	T	SNP	OR2T1	ENST00000366474	human	ensembl	74_37	+1	known	silent	c.219	p.T73	0.000	NULL	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2T1	HGNC	ENSG00000175143				227	0	0	168	75	30.8642
CNKSR1	0	genome.wustl.edu	37	1	26515141	26515141	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	1	26515141	26515141	C	T	SNP	CNKSR1	ENST00000374253	human	ensembl	74_37	+1	known	missense	c.1664	p.A555V	0.874	NULL	pfam_CRIC_domain_Chordata,pfam_Pleckstrin_homology,pfam_SAM_type1,superfamily_SAM/pointed,superfamily_PDZ,smart_SAM,smart_Pleckstrin_homology,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_SAM	-	no_errors	CNKSR1	HGNC	ENSG00000142675				43	0	0	37	15	28.8462
ARID1A	0	genome.wustl.edu	37	1	27099053	27099053	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	1	27099053	27099053	G	T	SNP	ARID1A	ENST00000324856	human	ensembl	74_37	+1	known	nonsense	c.3469	p.G1157*	1.000	NULL	pfam_DUF3518,pfam_ARID/BRIGHT_DNA-bd,superfamily_ARID/BRIGHT_DNA-bd,superfamily_ARM-type_fold,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID1A	HGNC	ENSG00000117713				72	0	0	71	28	28.2828
ARID1A	0	genome.wustl.edu	37	1	27105617	27105617	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	1	27105617	27105617	C	T	SNP	ARID1A	ENST00000324856	human	ensembl	74_37	+1	known	missense	c.5228	p.T1743M	1.000	NULL	pfam_DUF3518,pfam_ARID/BRIGHT_DNA-bd,superfamily_ARID/BRIGHT_DNA-bd,superfamily_ARM-type_fold,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID1A	HGNC	ENSG00000117713				232	0	0	198	67	25.283
TMEM222	0	genome.wustl.edu	37	1	27660540	27660540	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	1	27660540	27660540	C	T	SNP	TMEM222	ENST00000374076	human	ensembl	74_37	+1	known	missense	c.403	p.R135C	1.000	pfam_DUF778	pfam_DUF778	-	no_errors	TMEM222	HGNC	ENSG00000186501				64	0	0	44	11	20
SRSF4	0	genome.wustl.edu	37	1	29485950	29485950	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	1	29485950	29485950	G	C	SNP	SRSF4	ENST00000373795	human	ensembl	74_37	-1	known	missense	c.299	p.T100S	0.914	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	SRSF4	HGNC	ENSG00000116350				70	0	0	41	18	30.5085
COL16A1	0	genome.wustl.edu	37	1	32157657	32157657	+	Silent	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	1	32157657	32157657	G	A	SNP	COL16A1	ENST00000271069	human	ensembl	74_37	-1	known	silent	c.1206	p.G402	0.991	pfam_Collagen	pfam_Collagen,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G	-	no_errors	COL16A1	HGNC	ENSG00000084636				133	1	0.746269	95	27	22.1311
MARCKSL1	0	genome.wustl.edu	37	1	32801580	32801580	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	1	32801580	32801580	C	T	SNP	MARCKSL1	ENST00000329421	human	ensembl	74_37	-1	known	missense	c.55	p.A19T	1.000	pfam_MARCKS	pfam_MARCKS,prints_MARCKS	-	no_errors	MARCKSL1	HGNC	ENSG00000175130				35	0	0	22	9	29.0323
PRDM16	0	genome.wustl.edu	37	1	3347517	3347517	+	Silent	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	1	3347517	3347517	C	T	SNP	PRDM16	ENST00000270722	human	ensembl	74_37	+1	known	silent	c.3366	p.D1122	0.252	NULL	pfam_Znf_C2H2,pfam_Znf_BED_prd,smart_SET_dom,smart_Znf_C2H2-like,pfscan_SET_dom,pfscan_Znf_C2H2	-	no_errors	PRDM16	HGNC	ENSG00000142611				32	0	0	30	15	33.3333
ADC	0	genome.wustl.edu	37	1	33560206	33560206	+	Silent	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	1	33560206	33560206	C	T	SNP	ADC	ENST00000373441	human	ensembl	74_37	+1	known	silent	c.645	p.D215	0.012	pfam_De-COase2_N	pfam_De-COase2_N,pfam_De-COase2_C,superfamily_Ala_racemase/Decarboxylase_C,prints_Orn_de-COase,prints_Orn/DAP/Arg_de-COase	-	no_errors	ADC	HGNC	ENSG00000142920				96	0	0	74	36	32.7273
C1orf94	0	genome.wustl.edu	37	1	34663085	34663085	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	1	34663085	34663085	A	G	SNP	C1orf94	ENST00000488417	human	ensembl	74_37	+1	known	missense	c.580	p.I194V	0.000	NULL	NULL	-	no_errors	C1orf94	HGNC	ENSG00000142698				106	0	0	82	32	28.0702
NCDN	0	genome.wustl.edu	37	1	36031043	36031043	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	1	36031043	36031043	G	A	SNP	NCDN	ENST00000356090	human	ensembl	74_37	+1	known	missense	c.1969	p.A657T	0.435	NULL	NULL	-	no_errors	NCDN	HGNC	ENSG00000020129				20	0	0	19	6	24
THRAP3	0	genome.wustl.edu	37	1	36748267	36748267	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	1	36748267	36748267	C	T	SNP	THRAP3	ENST00000354618	human	ensembl	74_37	+1	known	nonsense	c.103	p.R35*	1.000	NULL	NULL	-	no_errors	THRAP3	HGNC	ENSG00000054118				115	0	0	82	22	21.1538
THRAP3	0	genome.wustl.edu	37	1	36769580	36769580	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	1	36769580	36769580	C	T	SNP	THRAP3	ENST00000354618	human	ensembl	74_37	+1	known	nonsense	c.2830	p.R944*	1.000	NULL	NULL	-	no_errors	THRAP3	HGNC	ENSG00000054118				32	0	0	25	5	16.6667
EPHA10	0	genome.wustl.edu	37	1	38227422	38227422	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	1	38227422	38227422	G	A	SNP	EPHA10	ENST00000427468	human	ensembl	74_37	-1	known	missense	c.505	p.R169C	1.000	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ephrin_rcpt_lig-bd_dom,superfamily_Galactose-bd-like,smart_Ephrin_rcpt_lig-bd_dom	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_SAM/pointed,superfamily_Fibronectin_type3,superfamily_Growth_fac_rcpt_N_dom,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_dom	-	no_errors	EPHA10	HGNC	ENSG00000183317				71	0	0	40	30	42.8571
MTF1	0	genome.wustl.edu	37	1	38304325	38304325	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	1	38304325	38304325	G	A	SNP	MTF1	ENST00000373036	human	ensembl	74_37	-1	known	nonsense	c.751	p.R251*	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	MTF1	HGNC	ENSG00000188786				112	0	0	105	33	23.913
ZNF684	0	genome.wustl.edu	37	1	41007384	41007384	+	Splice_Site	SNP	T	T	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	1	41007384	41007384	T	C	SNP	ZNF684	ENST00000372699	human	ensembl	74_37	+1	known	splice_site	c.238+2	e3+2	1.000	-	-	-	no_errors	ZNF684	HGNC	ENSG00000117010				37	0	0	19	6	24
ZNF691	0	genome.wustl.edu	37	1	43317175	43317175	+	Silent	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	1	43317175	43317175	G	A	SNP	ZNF691	ENST00000397044	human	ensembl	74_37	+1	known	silent	c.639	p.T213	0.426	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF691	HGNC	ENSG00000164011				58	0	0	29	16	35.5556
TMEM125	0	genome.wustl.edu	37	1	43738845	43738845	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	1	43738845	43738845	G	A	SNP	TMEM125	ENST00000432792	human	ensembl	74_37	+1	known	missense	c.452	p.G151D	1.000	NULL	NULL	-	no_errors	TMEM125	HGNC	ENSG00000179178				36	0	0	25	8	24.2424
DPH2	0	genome.wustl.edu	37	1	44438134	44438134	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	1	44438134	44438134	G	T	SNP	DPH2	ENST00000255108	human	ensembl	74_37	+1	known	missense	c.1393	p.G465C	1.000	tigrfam_DHP2_eu	pfam_DPH1/DPH2,tigrfam_DPH1/DPH2,tigrfam_DHP2_eu	-	no_errors	DPH2	HGNC	ENSG00000132768				111	0	0	87	24	21.6216
TCTEX1D4	0	genome.wustl.edu	37	1	45271717	45271717	+	Silent	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	1	45271717	45271717	C	T	SNP	TCTEX1D4	ENST00000339355	human	ensembl	74_37	-1	known	silent	c.624	p.S208	0.435	pfam_Tctex	pfam_Tctex	-	no_errors	TCTEX1D4	HGNC	ENSG00000188396				48	0	0	14	4	22.2222
MKNK1	0	genome.wustl.edu	37	1	47040609	47040609	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	1	47040609	47040609	C	T	SNP	MKNK1	ENST00000545730	human	ensembl	74_37	-1	known	missense	c.398	p.R133H	1.000	pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,pfscan_Prot_kinase_dom	-	no_errors	MKNK1	HGNC	ENSG00000079277				27	0	0	18	6	25
EFCAB14	0	genome.wustl.edu	37	1	47144226	47144226	+	Silent	SNP	A	A	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	1	47144226	47144226	A	G	SNP	EFCAB14	ENST00000371933	human	ensembl	74_37	-1	known	silent	c.1395	p.S465	0.999	pfscan_EF_hand_dom	pfscan_EF_hand_dom	-	no_errors	EFCAB14	HGNC	ENSG00000159658				113	0	0	73	40	35.3982
TXNDC12	0	genome.wustl.edu	37	1	52492989	52492989	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	1	52492989	52492989	T	A	SNP	TXNDC12	ENST00000371626	human	ensembl	74_37	-1	known	missense	c.243	p.E81D	1.000	pfam_Thioredoxin_domain,superfamily_Thioredoxin-like_fold	pfam_Thioredoxin_domain,superfamily_Thioredoxin-like_fold	-	no_errors	TXNDC12	HGNC	ENSG00000117862				87	0	0	81	24	22.8571
ORC1	0	genome.wustl.edu	37	1	52840492	52840492	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	1	52840492	52840492	G	A	SNP	ORC1	ENST00000371566	human	ensembl	74_37	-1	known	missense	c.2381	p.T794M	1.000	pfam_Cdc6_C_dom	pfam_BAH_dom,pfam_ATPase_AAA_core,pfam_Cdc6_C_dom,pfam_DUF2075,superfamily_P-loop_NTPase,smart_BAH_dom,smart_AAA+_ATPase,pfscan_BAH_dom	-	no_errors	ORC1	HGNC	ENSG00000085840				42	0	0	37	9	19.5652
CHD5	0	genome.wustl.edu	37	1	6215763	6215763	+	Silent	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	1	6215763	6215763	C	T	SNP	CHD5	ENST00000262450	human	ensembl	74_37	-1	known	silent	c.402	p.S134	0.414	NULL	pfam_CHD_C2,pfam_SNF2_N,pfam_DUF1086,pfam_CHD_N,pfam_DUF1087,pfam_Znf_PHD-finger,pfam_Chromo_domain,pfam_Helicase_C,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,superfamily_Chromodomain-like,superfamily_Znf_FYVE_PHD,superfamily_HMG_box_dom,smart_Znf_PHD,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Znf_PHD-finger,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD5	HGNC	ENSG00000116254				55	0	0	44	8	15.3846
RPL22	0	genome.wustl.edu	37	1	6246790	6246790	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	1	6246790	6246790	T	C	SNP	RPL22	ENST00000234875	human	ensembl	74_37	-1	known	missense	c.329	p.Y110C	1.000	pfam_Ribosomal_L22e	pfam_Ribosomal_L22e	-	no_errors	RPL22	HGNC	ENSG00000116251				54	0	0	34	18	34.6154
INADL	0	genome.wustl.edu	37	1	62516732	62516732	+	Splice_Site	SNP	T	T	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	1	62516732	62516732	T	C	SNP	INADL	ENST00000371158	human	ensembl	74_37	+1	known	splice_site	c.4125+2	e30+2	1.000	-	-	-	no_errors	INADL	HGNC	ENSG00000132849				60	0	0	47	13	21.6667
KANK4	0	genome.wustl.edu	37	1	62740559	62740559	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	1	62740559	62740559	A	C	SNP	KANK4	ENST00000371153	human	ensembl	74_37	-1	known	missense	c.217	p.F73V	1.000	NULL	pfam_KN_motif,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	KANK4	HGNC	ENSG00000132854				250	0	0	161	57	26.1468
DNAJC11	0	genome.wustl.edu	37	1	6698426	6698426	+	Splice_Site	SNP	T	T	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	1	6698426	6698426	T	C	SNP	DNAJC11	ENST00000377577	human	ensembl	74_37	-1	known	splice_site	c.1254-2	e12-2	0.998	-	-	-	no_errors	DNAJC11	HGNC	ENSG00000007923				33	0	0	52	7	11.8644
NEGR1	0	genome.wustl.edu	37	1	72748049	72748049	+	Silent	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	1	72748049	72748049	C	T	SNP	NEGR1	ENST00000357731	human	ensembl	74_37	-1	known	silent	c.129	p.A43	0.991	pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	NEGR1	HGNC	ENSG00000172260				89	0	0	44	13	22.807
CAMTA1	0	genome.wustl.edu	37	1	7797375	7797375	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	1	7797375	7797375	C	T	SNP	CAMTA1	ENST00000303635	human	ensembl	74_37	+1	known	missense	c.3403	p.R1135W	0.947	superfamily_Ankyrin_rpt-contain_dom,pfscan_Ankyrin_rpt-contain_dom	pfam_CG-1_dom,pfam_IPT,pfam_IQ_motif_EF-hand-BS,superfamily_Ig_E-set,superfamily_Ankyrin_rpt-contain_dom,superfamily_P-loop_NTPase,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_IQ_motif_EF-hand-BS	-	no_errors	CAMTA1	HGNC	ENSG00000171735				192	0	0	120	46	27.7108
ZZZ3	0	genome.wustl.edu	37	1	78097900	78097900	+	Silent	SNP	G	G	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	1	78097900	78097900	G	T	SNP	ZZZ3	ENST00000370801	human	ensembl	74_37	-1	known	silent	c.1140	p.T380	1.000	NULL	pfam_SANT/Myb,pfam_Znf_ZZ,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Znf_ZZ,pfscan_Myb-like_dom	-	no_errors	ZZZ3	HGNC	ENSG00000036549				152	0	0	111	35	23.9726
IFI44	0	genome.wustl.edu	37	1	79121150	79121150	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	1	79121150	79121150	A	C	SNP	IFI44	ENST00000370747	human	ensembl	74_37	+1	known	missense	c.794	p.D265A	0.229	superfamily_P-loop_NTPase	pfam_TLDc,superfamily_P-loop_NTPase	-	no_errors	IFI44	HGNC	ENSG00000137965				84	0	0	97	6	5.82524
SPATA1	0	genome.wustl.edu	37	1	85014616	85014616	+	RNA	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	1	85014616	85014616	C	T	SNP	SPATA1	ENST00000460286	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.996	-	-	-	no_errors	SPATA1	HGNC	ENSG00000122432				114	0	0	84	23	21.4953
CTBS	0	genome.wustl.edu	37	1	85036346	85036346	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	1	85036346	85036346	T	C	SNP	CTBS	ENST00000370630	human	ensembl	74_37	-1	known	missense	c.235	p.T79A	1.000	superfamily_Glycoside_hydrolase_SF,smart_Chitinase_II	pfam_Glyco_hydro18cat,superfamily_Glycoside_hydrolase_SF,smart_Chitinase_II	-	no_errors	CTBS	HGNC	ENSG00000117151				143	0	0	113	8	6.61157
SYDE2	0	genome.wustl.edu	37	1	85666191	85666191	+	Silent	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	1	85666191	85666191	C	T	SNP	SYDE2	ENST00000341460	human	ensembl	74_37	-1	known	silent	c.489	p.G163	0.957	NULL	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,superfamily_C2_dom,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	SYDE2	HGNC	ENSG00000097096				65	0	0	43	18	29.5082
CLCA1	0	genome.wustl.edu	37	1	86965639	86965639	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	1	86965639	86965639	A	G	SNP	CLCA1	ENST00000234701	human	ensembl	74_37	+1	known	missense	c.2656	p.N886D	0.109	NULL	pfam_Cl_channel_Ca,pfam_DUF1973,pfam_VWF_A,superfamily_Fibronectin_type3,smart_VWF_A,pfscan_VWF_A,tigrfam_CaCC_prot	-	no_errors	CLCA1	HGNC	ENSG00000016490				180	0	0	138	46	25
CLCA4	0	genome.wustl.edu	37	1	87031502	87031502	+	Silent	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	1	87031502	87031502	C	T	SNP	CLCA4	ENST00000370563	human	ensembl	74_37	+1	known	silent	c.753	p.N251	0.006	pfam_Cl_channel_Ca,tigrfam_CaCC_prot	pfam_Cl_channel_Ca,pfam_DUF1973,pfam_VWF_A,superfamily_Fibronectin_type3,smart_VWF_A,pfscan_VWF_A,tigrfam_CaCC_prot	-	no_errors	CLCA4	HGNC	ENSG00000016602				69	0	0	76	5	6.17284
NOC2L	0	genome.wustl.edu	37	1	889451	889451	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	1	889451	889451	G	A	SNP	NOC2L	ENST00000327044	human	ensembl	74_37	-1	known	missense	c.710	p.P237L	0.837	NULL	pfam_Noc2,superfamily_ARM-type_fold	-	no_errors	NOC2L	HGNC	ENSG00000188976				89	0	0	76	29	27.619
GBP3	0	genome.wustl.edu	37	1	89480280	89480280	+	Silent	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	1	89480280	89480280	G	A	SNP	GBP3	ENST00000370481	human	ensembl	74_37	-1	known	silent	c.378	p.L126	0.911	pfam_Guanylate-bd_N,superfamily_P-loop_NTPase	pfam_Guanylate-bd_N,pfam_Guanylate-bd_C,superfamily_Guanylate-bd_C,superfamily_P-loop_NTPase	-	no_errors	GBP3	HGNC	ENSG00000117226				199	0	0	140	33	19.0751
LRRC8D	0	genome.wustl.edu	37	1	90400499	90400499	+	Silent	SNP	A	A	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	1	90400499	90400499	A	G	SNP	LRRC8D	ENST00000337338	human	ensembl	74_37	+1	known	silent	c.1872	p.K624	1.000	NULL	pfam_LRR_protein-8_N,pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC8D	HGNC	ENSG00000171492				92	0	0	95	6	5.94059
PIK3CD	0	genome.wustl.edu	37	1	9778917	9778917	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	1	9778917	9778917	G	A	SNP	PIK3CD	ENST00000536656	human	ensembl	74_37	+1	known	missense	c.1081	p.A361T	1.000	pfam_PI3K_C2_dom,superfamily_C2_dom,smart_PI3K_C2_dom	pfam_PI3/4_kinase_cat_dom,pfam_PInositide-3_kin_accessory_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,pfam_PI3K_Ras-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_dom,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CD	HGNC	ENSG00000171608				71	0	0	57	16	21.9178
DPYD	0	genome.wustl.edu	37	1	98165040	98165040	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	1	98165040	98165040	A	G	SNP	DPYD	ENST00000370192	human	ensembl	74_37	-1	known	missense	c.547	p.S183P	1.000	superfamily_Helical_ferredxn	pfam_Dihydroorotate_DH_1_2,pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,pfam_tRNA_hU_synthase,superfamily_Helical_ferredxn,prints_FAD_pyr_nucl-diS_OxRdtase,tigrfam_Dihydroorotate_DH	-	no_errors	DPYD	HGNC	ENSG00000188641				295	0	0	222	80	26.4901
NKX2-3	0	genome.wustl.edu	37	10	101294811	101294811	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	10	101294811	101294811	C	T	SNP	NKX2-3	ENST00000344586	human	ensembl	74_37	+1	known	missense	c.428	p.P143L	0.999	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa	-	no_errors	NKX2-3	HGNC	ENSG00000119919				17	0	0	10	4	28.5714
PSD	0	genome.wustl.edu	37	10	104176760	104176760	+	Silent	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	10	104176760	104176760	G	A	SNP	PSD	ENST00000020673	human	ensembl	74_37	-1	known	silent	c.36	p.G12	0.901	NULL	pfam_Sec7_dom,pfam_Pleckstrin_homology,superfamily_Sec7_dom,smart_Sec7_dom,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Sec7_dom,prints_PH_dom-spectrin-type	-	no_errors	PSD	HGNC	ENSG00000059915				22	0	0	14	4	22.2222
CYP17A1	0	genome.wustl.edu	37	10	104595165	104595165	+	RNA	SNP	A	A	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	10	104595165	104595165	A	G	SNP	CYP17A1	ENST00000489268	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	CYP17A1	HGNC	ENSG00000148795				99	0	0	81	23	22.1154
PCGF6	0	genome.wustl.edu	37	10	105107192	105107192	+	Silent	SNP	T	T	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	10	105107192	105107192	T	C	SNP	PCGF6	ENST00000369847	human	ensembl	74_37	-1	known	silent	c.573	p.L191	1.000	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	PCGF6	HGNC	ENSG00000156374				69	0	0	52	9	14.7541
SFR1	0	genome.wustl.edu	37	10	105885351	105885351	+	Silent	SNP	T	T	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	10	105885351	105885351	T	C	SNP	SFR1	ENST00000336358	human	ensembl	74_37	+1	known	silent	c.813	p.A271	0.429	pfam_Ds-recomb_repair_prot_Mei5	pfam_Ds-recomb_repair_prot_Mei5	-	no_errors	SFR1	HGNC	ENSG00000156384				93	0	0	96	8	7.69231
SORCS1	0	genome.wustl.edu	37	10	108489836	108489836	+	Silent	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	10	108489836	108489836	C	T	SNP	SORCS1	ENST00000344440	human	ensembl	74_37	-1	known	silent	c.996	p.V332	0.998	smart_VPS10	pfam_PKD_dom,superfamily_PKD_dom,smart_VPS10,pfscan_PKD_dom	-	no_errors	SORCS1	HGNC	ENSG00000108018				123	0	0	93	7	7
HABP2	0	genome.wustl.edu	37	10	115340373	115340373	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	10	115340373	115340373	A	C	SNP	HABP2	ENST00000351270	human	ensembl	74_37	+1	known	missense	c.760	p.K254Q	0.986	pfam_Kringle,superfamily_Kringle-like,smart_Kringle,pfscan_Kringle	pfam_Peptidase_S1,pfam_Kringle,pfam_EG-like_dom,superfamily_Trypsin-like_Pept_dom,superfamily_Kringle-like,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_Kringle,smart_Peptidase_S1,pfscan_EG-like_dom,pfscan_Kringle,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	HABP2	HGNC	ENSG00000148702				152	1	0.653595	119	41	25.625
HABP2	0	genome.wustl.edu	37	10	115341710	115341710	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	10	115341710	115341710	A	G	SNP	HABP2	ENST00000351270	human	ensembl	74_37	+1	known	missense	c.914	p.E305G	0.405	superfamily_Trypsin-like_Pept_dom	pfam_Peptidase_S1,pfam_Kringle,pfam_EG-like_dom,superfamily_Trypsin-like_Pept_dom,superfamily_Kringle-like,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_Kringle,smart_Peptidase_S1,pfscan_EG-like_dom,pfscan_Kringle,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	HABP2	HGNC	ENSG00000148702				238	0	0	170	58	25.4386
C10orf118	0	genome.wustl.edu	37	10	115910861	115910861	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	10	115910861	115910861	C	T	SNP	C10orf118	ENST00000369287	human	ensembl	74_37	-1	known	missense	c.878	p.R293Q	0.999	NULL	superfamily_Prefoldin	-	no_errors	C10orf118	HGNC	ENSG00000165813				190	0	0	122	35	22.293
VWA2	0	genome.wustl.edu	37	10	116038514	116038514	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	10	116038514	116038514	C	T	SNP	VWA2	ENST00000392982	human	ensembl	74_37	+1	known	missense	c.737	p.T246M	0.996	NULL	pfam_VWF_A,pfam_EG-like_dom,pfam_EGF_extracell,smart_VWF_A,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom,pfscan_VWF_A	-	no_errors	VWA2	HGNC	ENSG00000165816				132	0	0	86	24	21.8182
KIAA1598	0	genome.wustl.edu	37	10	118738812	118738812	+	Silent	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	10	118738812	118738812	G	A	SNP	KIAA1598	ENST00000392903	human	ensembl	74_37	-1	known	silent	c.66	p.G22	0.998	NULL	superfamily_Adenylate_cyclase-assoc_CAP_N	-	no_errors	KIAA1598	HGNC	ENSG00000187164				70	0	0	57	24	29.6296
SLC18A2	0	genome.wustl.edu	37	10	119001216	119001216	+	Silent	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	10	119001216	119001216	C	T	SNP	SLC18A2	ENST00000298472	human	ensembl	74_37	+1	known	silent	c.12	p.S4	0.999	NULL	pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC18A2	HGNC	ENSG00000165646				13	0	0	7	5	41.6667
PRDX3	0	genome.wustl.edu	37	10	120928817	120928817	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	10	120928817	120928817	G	A	SNP	PRDX3	ENST00000298510	human	ensembl	74_37	-1	known	missense	c.589	p.H197Y	1.000	pfam_AhpC/TSA,pfam_Redoxin,superfamily_Thioredoxin-like_fold	pfam_AhpC/TSA,pfam_Redoxin,pfam_Peroxiredoxin_C,superfamily_Thioredoxin-like_fold	-	no_errors	PRDX3	HGNC	ENSG00000165672				50	0	0	38	12	24
PLEKHA1	0	genome.wustl.edu	37	10	124189429	124189429	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	10	124189429	124189429	C	T	SNP	PLEKHA1	ENST00000368990	human	ensembl	74_37	+1	known	missense	c.1190	p.A397V	0.982	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	PLEKHA1	HGNC	ENSG00000107679				64	0	0	57	15	20.8333
HMX2	0	genome.wustl.edu	37	10	124909354	124909354	+	Silent	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	10	124909354	124909354	C	T	SNP	HMX2	ENST00000339992	human	ensembl	74_37	+1	known	silent	c.537	p.R179	1.000	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa	-	no_errors	HMX2	HGNC	ENSG00000188816				37	0	0	27	5	15.625
C10orf137	0	genome.wustl.edu	37	10	127451935	127451935	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	10	127451935	127451935	C	T	SNP	C10orf137	ENST00000356792	human	ensembl	74_37	+1	known	missense	c.3611	p.A1204V	0.994	NULL	NULL	-	no_errors	C10orf137	HGNC	ENSG00000107938				95	0	0	98	23	19.0083
FAM196A	0	genome.wustl.edu	37	10	128973736	128973736	+	Silent	SNP	T	T	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	10	128973736	128973736	T	C	SNP	FAM196A	ENST00000522781	human	ensembl	74_37	-1	known	silent	c.924	p.S308	0.000	NULL	NULL	-	no_errors	FAM196A	HGNC	ENSG00000188916				120	1	0.826446	98	7	6.66667
GPR123	0	genome.wustl.edu	37	10	134884565	134884565	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	10	134884565	134884565	C	T	SNP	GPR123	ENST00000607359	human	ensembl	74_37	+1	putative	missense	c.133	p.R45W	0.000	NULL	pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like	-	no_errors	GPR123	HGNC	ENSG00000197177				14	0	0	13	5	27.7778
GPR123	0	genome.wustl.edu	37	10	134942136	134942136	+	Silent	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	10	134942136	134942136	C	T	SNP	GPR123	ENST00000607359	human	ensembl	74_37	+1	putative	silent	c.2961	p.A987	1.000	pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like	pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like	-	no_errors	GPR123	HGNC	ENSG00000197177				23	0	0	10	7	41.1765
CYP2E1	0	genome.wustl.edu	37	10	135341951	135341951	+	RNA	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	10	135341951	135341951	G	A	SNP	CYP2E1	ENST00000480558	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	CYP2E1	HGNC	ENSG00000130649				31	0	0	15	8	34.7826
RPP38	0	genome.wustl.edu	37	10	15145991	15145991	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	10	15145991	15145991	C	A	SNP	RPP38	ENST00000378197	human	ensembl	74_37	+1	known	missense	c.678	p.S226R	0.001	NULL	pfam_Ribosomal_L7Ae/L30e/S12e/Gad45	-	no_errors	RPP38	HGNC	ENSG00000152464				129	0	0	79	30	27.5229
FAM171A1	0	genome.wustl.edu	37	10	15255974	15255974	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	10	15255974	15255974	T	C	SNP	FAM171A1	ENST00000378116	human	ensembl	74_37	-1	known	missense	c.1613	p.E538G	1.000	pfam_Uncharacterised_FAM171	pfam_Uncharacterised_FAM171	-	no_errors	FAM171A1	HGNC	ENSG00000148468				241	0	0	197	61	23.6434
CUBN	0	genome.wustl.edu	37	10	17113457	17113457	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	10	17113457	17113457	T	G	SNP	CUBN	ENST00000377833	human	ensembl	74_37	-1	known	missense	c.2593	p.S865R	0.000	pfam_CUB_dom,superfamily_CUB_dom,smart_CUB_dom,pfscan_CUB_dom	pfam_CUB_dom,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,superfamily_CUB_dom,superfamily_Growth_fac_rcpt_N_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_CUB_dom,pfscan_CUB_dom,pfscan_EG-like_dom	-	no_errors	CUBN	HGNC	ENSG00000107611				115	0	0	82	16	16.3265
STAM	0	genome.wustl.edu	37	10	17756586	17756586	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	10	17756586	17756586	C	T	SNP	STAM	ENST00000377524	human	ensembl	74_37	+1	known	missense	c.1430	p.A477V	0.980	NULL	pfam_VHS,pfam_SH3_domain,pfam_SH3_2,pfam_Ubiquitin-int_motif,superfamily_ENTH_VHS,superfamily_SH3_domain,smart_VHS_subgr,smart_SH3_domain,pfscan_SH3_domain,pfscan_Ubiquitin-int_motif,pfscan_VHS,prints_SH3_domain,prints_p67phox	-	no_errors	STAM	HGNC	ENSG00000136738				128	0	0	75	29	27.8846
SLC39A12	0	genome.wustl.edu	37	10	18292281	18292281	+	Silent	SNP	T	T	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	10	18292281	18292281	T	C	SNP	SLC39A12	ENST00000377369	human	ensembl	74_37	+1	known	silent	c.1941	p.V647	0.975	pfam_ZIP	pfam_ZIP	-	no_errors	SLC39A12	HGNC	ENSG00000148482				162	0	0	117	40	25.4777
MLLT10	0	genome.wustl.edu	37	10	22021968	22021968	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	10	22021968	22021968	G	A	SNP	MLLT10	ENST00000307729	human	ensembl	74_37	+1	known	missense	c.2359	p.A787T	0.000	NULL	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	MLLT10	HGNC	ENSG00000078403				108	0	0	64	19	22.8916
ABI1	0	genome.wustl.edu	37	10	27066140	27066140	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	10	27066140	27066140	G	A	SNP	ABI1	ENST00000355394	human	ensembl	74_37	-1	known	nonsense	c.316	p.R106*	1.000	pfam_Abl-interactor_HHR_dom,pfscan_T_SNARE_dom	pfam_Abl-interactor_HHR_dom,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain,pfscan_T_SNARE_dom,prints_SH3_domain,prints_p67phox	-	no_errors	ABI1	HGNC	ENSG00000136754				58	0	0	48	17	26.1538
KIAA1462	0	genome.wustl.edu	37	10	30316940	30316940	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	10	30316940	30316940	G	A	SNP	KIAA1462	ENST00000375377	human	ensembl	74_37	-1	known	missense	c.2137	p.P713S	0.000	NULL	NULL	-	no_errors	KIAA1462	HGNC	ENSG00000165757				90	0	0	82	5	5.74713
ZNF33B	0	genome.wustl.edu	37	10	43089408	43089408	+	Silent	SNP	T	T	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	10	43089408	43089408	T	C	SNP	ZNF33B	ENST00000359467	human	ensembl	74_37	-1	known	silent	c.990	p.E330	0.970	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF33B	HGNC	ENSG00000196693				251	0	0	263	42	13.7705
ENSG00000243349	0	genome.wustl.edu	37	10	45652250	45652250	+	RNA	SNP	A	A	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	10	45652250	45652250	A	C	SNP	ENSG00000243349	ENST00000427229	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.984	-	-	-	no_errors	RP11-445N18.7	Clone_based_vega_gene	ENSG00000243349				38	0	0	26	4	13.3333
ERCC6	0	genome.wustl.edu	37	10	50678712	50678712	+	Silent	SNP	A	A	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	10	50678712	50678712	A	G	SNP	ERCC6	ENST00000355832	human	ensembl	74_37	-1	known	silent	c.3294	p.S1098	0.000	NULL	pfam_SNF2_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	ERCC6	HGNC	ENSG00000225830				185	0	0	174	17	8.90052
PRKG1	0	genome.wustl.edu	37	10	52834585	52834585	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	10	52834585	52834585	A	G	SNP	PRKG1	ENST00000373980	human	ensembl	74_37	+1	known	missense	c.235	p.I79V	1.000	pirsf_cGMP-dependent_protein_kinase	pirsf_cGMP-dependent_protein_kinase,pfam_Prot_kinase_dom,pfam_cNMP-bd_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,prints_cGMP_dep_kinase,prints_cAMP/cGMP_kin,pfscan_cNMP-bd_dom,pfscan_Prot_kinase_dom	-	no_errors	PRKG1	HGNC	ENSG00000185532				13	0	0	12	7	36.8421
CSTF2T	0	genome.wustl.edu	37	10	53458101	53458101	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	10	53458101	53458101	C	A	SNP	CSTF2T	ENST00000331173	human	ensembl	74_37	-1	known	missense	c.1209	p.R403S	0.943	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	CSTF2T	HGNC	ENSG00000177613				259	0	0	213	13	5.75221
PCDH15	0	genome.wustl.edu	37	10	55782925	55782925	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	10	55782925	55782925	T	G	SNP	PCDH15	ENST00000320301	human	ensembl	74_37	-1	known	missense	c.2253	p.Q751H	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH15	HGNC	ENSG00000150275				83	0	0	52	15	22.3881
IL2RA	0	genome.wustl.edu	37	10	6061429	6061429	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	10	6061429	6061429	A	G	SNP	IL2RA	ENST00000379959	human	ensembl	74_37	-1	known	missense	c.689	p.M230T	0.001	NULL	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	IL2RA	HGNC	ENSG00000134460				179	0	0	110	34	23.6111
ANK3	0	genome.wustl.edu	37	10	61831056	61831056	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	10	61831056	61831056	C	A	SNP	ANK3	ENST00000280772	human	ensembl	74_37	-1	known	missense	c.9583	p.G3195C	1.000	NULL	pfam_Ankyrin_rpt,pfam_ZU5,pfam_Death_domain,superfamily_Ankyrin_rpt-contain_dom,superfamily_DEATH-like_dom,smart_Ankyrin_rpt,smart_ZU5,smart_Death_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Death_domain,pfscan_ZU5,prints_Ankyrin_rpt	-	no_errors	ANK3	HGNC	ENSG00000151150				135	0	0	87	31	26.2712
ARID5B	0	genome.wustl.edu	37	10	63759903	63759903	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	10	63759903	63759903	C	T	SNP	ARID5B	ENST00000279873	human	ensembl	74_37	+1	known	missense	c.556	p.R186W	1.000	NULL	pfam_ARID/BRIGHT_DNA-bd,superfamily_ARID/BRIGHT_DNA-bd,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID5B	HGNC	ENSG00000150347				86	0	0	52	18	25.7143
JMJD1C	0	genome.wustl.edu	37	10	64979741	64979741	+	Silent	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	10	64979741	64979741	G	A	SNP	JMJD1C	ENST00000399262	human	ensembl	74_37	-1	known	silent	c.450	p.D150	1.000	NULL	pfam_JmjC_dom,smart_JmjC_dom,pfscan_JmjC_dom	-	no_errors	JMJD1C	HGNC	ENSG00000171988				103	0	0	82	25	23.3645
PRKCQ	0	genome.wustl.edu	37	10	6498723	6498723	+	Silent	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	10	6498723	6498723	G	A	SNP	PRKCQ	ENST00000263125	human	ensembl	74_37	-1	known	silent	c.1560	p.I520	0.116	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Prot_kin_PKC_delta,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_C2_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Prot_kin_PKC_delta,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_dom,prints_DAG/PE-bd,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	PRKCQ	HGNC	ENSG00000065675				65	0	0	58	10	14.7059
DNA2	0	genome.wustl.edu	37	10	70225564	70225564	+	Silent	SNP	A	A	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	10	70225564	70225564	A	G	SNP	DNA2	ENST00000399180	human	ensembl	74_37	-1	known	silent	c.705	p.S235	0.998	pfam_DNA_replication_fac_Dna2_N	pfam_DNA_replication_fac_Dna2_N,superfamily_P-loop_NTPase	-	no_errors	DNA2	HGNC	ENSG00000138346				32	0	0	27	11	28.9474
HK1	0	genome.wustl.edu	37	10	71158430	71158430	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	10	71158430	71158430	G	A	SNP	HK1	ENST00000448642	human	ensembl	74_37	+1	known	missense	c.2560	p.V854I	1.000	pfam_Hexokinase_C,prints_Hexokinase	pfam_Hexokinase_C,pfam_Hexokinase_N,prints_Hexokinase	-	no_errors	HK1	HGNC	ENSG00000156515				51	0	0	42	20	32.2581
UNC5B	0	genome.wustl.edu	37	10	73059019	73059019	+	Silent	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	10	73059019	73059019	C	T	SNP	UNC5B	ENST00000335350	human	ensembl	74_37	+1	known	silent	c.2823	p.T941	0.002	superfamily_DEATH-like_dom,smart_Death_domain	pfam_ZU5,pfam_Ig_I-set,pfam_Death_domain,pfam_Thrombospondin_1_rpt,superfamily_DEATH-like_dom,superfamily_Thrombospondin_1_rpt,smart_Ig_sub,smart_Ig_sub2,smart_Thrombospondin_1_rpt,smart_ZU5,smart_Death_domain,pfscan_Thrombospondin_1_rpt,pfscan_ZU5,pfscan_Ig-like_dom	-	no_errors	UNC5B	HGNC	ENSG00000107731				220	0	0	147	54	26.8657
NUDT13	0	genome.wustl.edu	37	10	74890516	74890516	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	10	74890516	74890516	T	A	SNP	NUDT13	ENST00000357321	human	ensembl	74_37	+1	known	missense	c.914	p.V305E	0.999	pfam_NUDIX_hydrolase_dom,superfamily_NUDIX_hydrolase_dom-like	pfam_NUDIX_hydrolase_dom,pfam_NADH_PPase-like_N,pfam_Znr_NADH_PPase,superfamily_NUDIX_hydrolase_dom-like	-	no_errors	NUDT13	HGNC	ENSG00000166321				105	0	0	95	7	6.86275
PLAU	0	genome.wustl.edu	37	10	75676249	75676249	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	10	75676249	75676249	G	A	SNP	PLAU	ENST00000372764	human	ensembl	74_37	+1	known	missense	c.1222	p.V408I	0.998	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1	pfam_Peptidase_S1,pfam_Kringle,superfamily_Trypsin-like_Pept_dom,superfamily_Kringle-like,smart_Kringle,smart_Peptidase_S1,pfscan_EG-like_dom,pfscan_Kringle,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	PLAU	HGNC	ENSG00000122861				30	0	0	26	6	18.75
VCL	0	genome.wustl.edu	37	10	75871668	75871668	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	10	75871668	75871668	C	T	SNP	VCL	ENST00000211998	human	ensembl	74_37	+1	known	missense	c.2747	p.P916L	0.999	superfamily_Vinculin/catenin	pfam_Vinculin/catenin,superfamily_Vinculin/catenin,prints_Vinculin	-	no_errors	VCL	HGNC	ENSG00000035403				43	0	0	27	8	22.8571
ITIH5	0	genome.wustl.edu	37	10	7618459	7618459	+	Silent	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	10	7618459	7618459	G	A	SNP	ITIH5	ENST00000256861	human	ensembl	74_37	-1	known	silent	c.1935	p.P645	0.000	NULL	pfam_ITI_HC_C,pfam_VIT,pfam_VWF_A,smart_VIT,smart_VWF_A,pfscan_VWF_A	-	no_errors	ITIH5	HGNC	ENSG00000123243				51	0	0	23	7	23.3333
ITIH5	0	genome.wustl.edu	37	10	7618934	7618934	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	10	7618934	7618934	C	T	SNP	ITIH5	ENST00000256861	human	ensembl	74_37	-1	known	missense	c.1460	p.R487H	0.990	NULL	pfam_ITI_HC_C,pfam_VIT,pfam_VWF_A,smart_VIT,smart_VWF_A,pfscan_VWF_A	-	no_errors	ITIH5	HGNC	ENSG00000123243				105	0	0	68	29	29.8969
KAT6B	0	genome.wustl.edu	37	10	76781836	76781836	+	Silent	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	10	76781836	76781836	G	A	SNP	KAT6B	ENST00000287239	human	ensembl	74_37	+1	known	silent	c.3219	p.E1073	0.928	NULL	pfam_MOZ_SAS,pfam_Znf_PHD-finger,pfam_Histone_H1/H5_H15,superfamily_Acyl_CoA_acyltransferase,superfamily_Znf_FYVE_PHD,smart_Histone_H1/H5_H15,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	KAT6B	HGNC	ENSG00000156650				45	0	0	28	13	31.7073
KAT6B	0	genome.wustl.edu	37	10	76789488	76789488	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	10	76789488	76789488	A	G	SNP	KAT6B	ENST00000287239	human	ensembl	74_37	+1	known	missense	c.4906	p.I1636V	1.000	NULL	pfam_MOZ_SAS,pfam_Znf_PHD-finger,pfam_Histone_H1/H5_H15,superfamily_Acyl_CoA_acyltransferase,superfamily_Znf_FYVE_PHD,smart_Histone_H1/H5_H15,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	KAT6B	HGNC	ENSG00000156650				118	1	0.840336	79	20	20.202
DUSP13	0	genome.wustl.edu	37	10	76863832	76863832	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	10	76863832	76863832	C	A	SNP	DUSP13	ENST00000491677	human	ensembl	74_37	-1	known	missense	c.111	p.M37I	0.005	NULL	pfam_Dual-sp_phosphatase_cat-dom,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Tyr/Dual-sp_Pase,pfscan_Dual-sp_phosphatase_subgr_cat,prints_Atypical_DUSP,prints_Atypical_DUSP_famA	-	no_errors	DUSP13	HGNC	ENSG00000079393				19	0	0	16	5	23.8095
SAMD8	0	genome.wustl.edu	37	10	76910314	76910314	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	10	76910314	76910314	C	T	SNP	SAMD8	ENST00000372690	human	ensembl	74_37	+1	known	missense	c.217	p.R73C	1.000	superfamily_SAM/pointed,smart_SAM	pfam_SAM_type1,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	-	no_errors	SAMD8	HGNC	ENSG00000156671				76	0	0	57	13	18.5714
SH2D4B	0	genome.wustl.edu	37	10	82331288	82331288	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	10	82331288	82331288	G	A	SNP	SH2D4B	ENST00000470604	human	ensembl	74_37	+1	known	missense	c.446	p.R149H	1.000	NULL	pfam_SH2,smart_SH2,pfscan_SH2,prints_SH2	-	no_errors	SH2D4B	HGNC	ENSG00000178217				69	0	0	59	16	21.3333
ACTA2	0	genome.wustl.edu	37	10	90697858	90697858	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	10	90697858	90697858	T	G	SNP	ACTA2	ENST00000224784	human	ensembl	74_37	-1	known	missense	c.950	p.K317T	1.000	pfam_Actin-related,smart_Actin-related	pfam_Actin-related,smart_Actin-related,prints_Actin-related	-	no_errors	ACTA2	HGNC	ENSG00000107796				149	0	0	92	32	25.8065
IFIT2	0	genome.wustl.edu	37	10	91066183	91066183	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	10	91066183	91066183	C	T	SNP	IFIT2	ENST00000371826	human	ensembl	74_37	+1	known	missense	c.470	p.A157V	0.861	pfscan_TPR-contain_dom	smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	IFIT2	HGNC	ENSG00000119922				78	0	0	67	17	20.2381
HTR7	0	genome.wustl.edu	37	10	92617193	92617193	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	10	92617193	92617193	A	G	SNP	HTR7	ENST00000336152	human	ensembl	74_37	-1	known	missense	c.236	p.V79A	0.002	NULL	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_5HT_7_rcpt,prints_GPCR_Rhodpsn,prints_Melcrt_ACTH_rcpt	-	no_errors	HTR7	HGNC	ENSG00000148680				88	0	0	75	4	5.06329
HHEX	0	genome.wustl.edu	37	10	94452214	94452214	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	10	94452214	94452214	G	A	SNP	HHEX	ENST00000282728	human	ensembl	74_37	+1	known	missense	c.451	p.E151K	1.000	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,prints_Homeobox_metazoa,pfscan_Homeobox_dom	-	no_errors	HHEX	HGNC	ENSG00000152804				92	0	0	79	20	20.202
MYOF	0	genome.wustl.edu	37	10	95111577	95111577	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	10	95111577	95111577	G	T	SNP	MYOF	ENST00000359263	human	ensembl	74_37	-1	known	missense	c.3508	p.H1170N	1.000	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	pfam_C2_dom,pfam_Ferlin_B-domain,pfam_FerIin-domain,pfam_Ferlin_A-domain,superfamily_C2_dom,smart_C2_dom,smart_Peroxin/Ferlin,pfscan_C2_dom	-	no_errors	MYOF	HGNC	ENSG00000138119				169	0	0	122	45	26.9461
ZDHHC16	0	genome.wustl.edu	37	10	99212022	99212022	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	10	99212022	99212022	C	T	SNP	ZDHHC16	ENST00000370854	human	ensembl	74_37	+1	known	missense	c.419	p.P140L	0.800	NULL	pfam_Znf_DHHC_palmitoyltrfase,pfscan_Znf_DHHC_palmitoyltrfase	-	no_errors	ZDHHC16	HGNC	ENSG00000171307				177	1	0.561798	108	22	16.9231
PI4K2A	0	genome.wustl.edu	37	10	99416585	99416585	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	10	99416585	99416585	C	T	SNP	PI4K2A	ENST00000370631	human	ensembl	74_37	+1	known	missense	c.776	p.S259L	1.000	pfam_PI3/4_kinase_cat_dom	pfam_PI3/4_kinase_cat_dom	-	no_errors	PI4K2A	HGNC	ENSG00000155252				242	0	0	208	73	25.9786
SBF2	0	genome.wustl.edu	37	11	10022471	10022471	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	11	10022471	10022471	A	T	SNP	SBF2	ENST00000256190	human	ensembl	74_37	-1	known	missense	c.851	p.V284D	0.972	pfam_DENN_dom,smart_DENN_dom,pfscan_DENN_dom	pfam_SBF2,pfam_DENN_dom,pfam_uDENN_dom,pfam_Myotubularin-like_Pase_dom,pfam_dDENN_dom,pfam_Pleckstrin_homology,pfam_GRAM,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,smart_GRAM,smart_Pleckstrin_homology,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom,pfscan_Pleckstrin_homology	-	no_errors	SBF2	HGNC	ENSG00000133812				65	0	0	48	11	18.6441
PGR	0	genome.wustl.edu	37	11	100996890	100996890	+	Splice_Site	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	11	100996890	100996890	C	T	SNP	PGR	ENST00000325455	human	ensembl	74_37	-1	known	splice_site	c.1638-1	e2-1	1.000	-	-	-	no_errors	PGR	HGNC	ENSG00000082175				29	0	0	23	16	41.0256
TRPC6	0	genome.wustl.edu	37	11	101362460	101362460	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	11	101362460	101362460	T	G	SNP	TRPC6	ENST00000344327	human	ensembl	74_37	-1	known	missense	c.955	p.K319Q	1.000	tigrfam_TRP_channel	pfam_Ion_trans_dom,pfam_TRP_dom,pfam_PKD1_2_channel,superfamily_Ankyrin_rpt-contain_dom,superfamily_ARM-type_fold,smart_Ankyrin_rpt,prints_TRPC6_channel,prints_TRPC_channel,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,tigrfam_TRP_channel	-	no_errors	TRPC6	HGNC	ENSG00000137672				96	0	0	74	22	22.9167
MUC6	0	genome.wustl.edu	37	11	1018712	1018712	+	Silent	SNP	A	A	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	11	1018712	1018712	A	G	SNP	MUC6	ENST00000421673	human	ensembl	74_37	-1	known	silent	c.4089	p.R1363	0.000	NULL	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_Cys_knot_C,pfscan_Cys_knot_C	-	no_errors	MUC6	HGNC	ENSG00000184956				165	0	0	151	40	20.9424
BIRC3	0	genome.wustl.edu	37	11	102196012	102196012	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	11	102196012	102196012	C	T	SNP	BIRC3	ENST00000263464	human	ensembl	74_37	+1	known	missense	c.772	p.R258C	0.445	pfam_BIR,smart_BIR,pfscan_BIR	pfam_BIR,pfam_CARD,superfamily_DEATH-like_dom,smart_BIR,smart_CARD,smart_Znf_RING,pfscan_CARD,pfscan_BIR,pfscan_Znf_RING	-	no_errors	BIRC3	HGNC	ENSG00000023445				123	0	0	101	29	22.3077
MUC6	0	genome.wustl.edu	37	11	1025193	1025193	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	11	1025193	1025193	G	T	SNP	MUC6	ENST00000421673	human	ensembl	74_37	-1	known	missense	c.2974	p.R992S	0.174	pfam_VWF_type-D,smart_VWF_type-D	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_Cys_knot_C,pfscan_Cys_knot_C	-	no_errors	MUC6	HGNC	ENSG00000184956				181	0	0	114	45	28.3019
DDI1	0	genome.wustl.edu	37	11	103908639	103908639	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	11	103908639	103908639	G	T	SNP	DDI1	ENST00000302259	human	ensembl	74_37	+1	known	missense	c.1089	p.E363D	1.000	NULL	pfam_Peptidase_aspartic_DDI1-type,pfam_Ubiquitin_dom,pfam_RVP_2,pfam_Pept_A2A_retrovirus_sg,superfamily_Peptidase_aspartic_dom,smart_Ubiquitin_dom,pfscan_Ubiquitin_supergroup	-	no_errors	DDI1	HGNC	ENSG00000170967				81	0	0	54	13	19.403
ALKBH8	0	genome.wustl.edu	37	11	107427686	107427686	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	11	107427686	107427686	C	T	SNP	ALKBH8	ENST00000417449	human	ensembl	74_37	-1	known	missense	c.182	p.R61Q	1.000	NULL	pfam_Methyltransf_11,pfam_AlkB_hom8_N,pfam_Oxoglu/Fe-dep_dioxygenase,pfam_Methyltransferase-rel	-	no_errors	ALKBH8	HGNC	ENSG00000137760				141	0	0	96	31	24.4094
C11orf65	0	genome.wustl.edu	37	11	108277568	108277568	+	Silent	SNP	A	A	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	11	108277568	108277568	A	G	SNP	C11orf65	ENST00000393084	human	ensembl	74_37	-1	known	silent	c.351	p.N117	0.000	NULL	NULL	-	no_errors	C11orf65	HGNC	ENSG00000166323				88	0	0	93	6	6.06061
EXPH5	0	genome.wustl.edu	37	11	108383615	108383615	+	Silent	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	11	108383615	108383615	C	T	SNP	EXPH5	ENST00000265843	human	ensembl	74_37	-1	known	silent	c.2619	p.S873	0.000	NULL	superfamily_Znf_FYVE_PHD,pfscan_Znf_FYVE-typ	-	no_errors	EXPH5	HGNC	ENSG00000110723				305	0	0	237	92	27.9635
MUC2	0	genome.wustl.edu	37	11	1088727	1088727	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	11	1088727	1088727	G	T	SNP	MUC2	ENST00000441003	human	ensembl	74_37	+1	known	missense	c.3512	p.R1171M	0.000	superfamily_TIL_dom	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,superfamily_Prot_inh_PMP,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_C	-	no_errors	MUC2	HGNC	ENSG00000198788				16	0	0	15	3	16.6667
FDXACB1	0	genome.wustl.edu	37	11	111747699	111747699	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	11	111747699	111747699	G	A	SNP	FDXACB1	ENST00000531487	human	ensembl	74_37	-1	known	missense	c.209	p.T70M	0.988	NULL	pfam_DUF2431	-	no_errors	FDXACB1	HGNC	ENSG00000255561				13	0	0	13	4	23.5294
GALNT18	0	genome.wustl.edu	37	11	11354360	11354360	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	11	11354360	11354360	C	A	SNP	GALNT18	ENST00000227756	human	ensembl	74_37	-1	known	missense	c.1297	p.G433W	1.000	NULL	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	GALNT18	HGNC	ENSG00000110328				85	0	0	58	9	13.4328
CSNK2A3	0	genome.wustl.edu	37	11	11374429	11374429	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	11	11374429	11374429	G	A	SNP	CSNK2A3	ENST00000528848	human	ensembl	74_37	-1	novel	missense	c.238	p.R80C	0.996	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Aminoglycoside_PTrfase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	CSNK2A3	HGNC	ENSG00000254598				195	0	0	154	53	25.6039
ZBTB16	0	genome.wustl.edu	37	11	114112978	114112978	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	11	114112978	114112978	G	A	SNP	ZBTB16	ENST00000335953	human	ensembl	74_37	+1	known	missense	c.1543	p.V515M	1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB16	HGNC	ENSG00000109906				58	0	0	40	14	25.9259
APOC3	0	genome.wustl.edu	37	11	116701502	116701502	+	Silent	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	11	116701502	116701502	C	T	SNP	APOC3	ENST00000227667	human	ensembl	74_37	+1	known	silent	c.69	p.A23	0.000	pfam_Apo-CIII	pfam_Apo-CIII	-	no_errors	APOC3	HGNC	ENSG00000110245				38	0	0	23	9	28.125
CEP164	0	genome.wustl.edu	37	11	117241945	117241945	+	Silent	SNP	A	A	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	11	117241945	117241945	A	T	SNP	CEP164	ENST00000278935	human	ensembl	74_37	+1	known	silent	c.915	p.G305	0.009	NULL	superfamily_WW_dom,smart_WW_dom,pfscan_WW_dom	-	no_errors	CEP164	HGNC	ENSG00000110274				139	0	0	107	58	35.1515
AMICA1	0	genome.wustl.edu	37	11	118081424	118081424	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	11	118081424	118081424	C	T	SNP	AMICA1	ENST00000356289	human	ensembl	74_37	-1	known	missense	c.202	p.E68K	0.061	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like_dom	-	no_errors	AMICA1	HGNC	ENSG00000160593				110	0	0	73	25	25.5102
MPZL3	0	genome.wustl.edu	37	11	118110974	118110974	+	Silent	SNP	A	A	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	11	118110974	118110974	A	T	SNP	MPZL3	ENST00000278949	human	ensembl	74_37	-1	known	silent	c.192	p.L64	0.951	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like_dom,prints_Myelin_P0	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like_dom,prints_Myelin_P0	-	no_errors	MPZL3	HGNC	ENSG00000160588				156	0	0	119	48	28.7425
KMT2A	0	genome.wustl.edu	37	11	118374596	118374596	+	Silent	SNP	A	A	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	11	118374596	118374596	A	G	SNP	KMT2A	ENST00000389506	human	ensembl	74_37	+1	known	silent	c.7980	p.S2660	0.000	pirsf_MeTrfase_trithorax	pfam_SET_dom,pfam_FYrich_C,pfam_Znf_PHD-finger,pfam_FYrich_N,pfam_Znf_CXXC,superfamily_Znf_FYVE_PHD,superfamily_Bromodomain,smart_Znf_PHD,smart_Bromodomain,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pirsf_MeTrfase_trithorax,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_CXXC,pfscan_Bromodomain	-	no_errors	KMT2A	HGNC	ENSG00000118058				59	0	0	57	22	27.8481
TTC36	0	genome.wustl.edu	37	11	118399486	118399486	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	11	118399486	118399486	G	A	SNP	TTC36	ENST00000302783	human	ensembl	74_37	+1	known	missense	c.287	p.R96Q	0.999	pfam_TPR_1,smart_TPR_repeat,pfscan_TPR-contain_dom	pfam_TPR_1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC36	HGNC	ENSG00000172425				76	0	0	53	4	7.01754
CBL	0	genome.wustl.edu	37	11	119156153	119156153	+	Silent	SNP	T	T	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	11	119156153	119156153	T	C	SNP	CBL	ENST00000264033	human	ensembl	74_37	+1	known	silent	c.1818	p.S606	0.950	NULL	pfam_Adaptor_Cbl_N_hlx,pfam_Adaptor_Cbl_SH2-like,pfam_Adaptor_Cbl_EF_hand-like,pfam_Znf_C3HC4_RING-type,pfam_UBA/Ts_N,superfamily_Adaptor_Cbl_N_hlx,superfamily_UBA-like,smart_Znf_RING,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Znf_RING	-	no_errors	CBL	HGNC	ENSG00000110395				106	0	0	66	24	26.6667
USP47	0	genome.wustl.edu	37	11	11926990	11926990	+	Silent	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	11	11926990	11926990	C	T	SNP	USP47	ENST00000399455	human	ensembl	74_37	+1	known	silent	c.924	p.Y308	1.000	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	-	no_errors	USP47	HGNC	ENSG00000170242				59	0	0	56	20	26.3158
USP47	0	genome.wustl.edu	37	11	11927094	11927094	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	11	11927094	11927094	T	C	SNP	USP47	ENST00000399455	human	ensembl	74_37	+1	known	missense	c.1028	p.V343A	1.000	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	-	no_errors	USP47	HGNC	ENSG00000170242				65	0	0	49	6	10.9091
TECTA	0	genome.wustl.edu	37	11	120996337	120996337	+	Silent	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	11	120996337	120996337	C	T	SNP	TECTA	ENST00000264037	human	ensembl	74_37	+1	known	silent	c.1530	p.C510	0.714	NULL	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_ZP_dom,pfam_Nidogen_extracell_dom,pfam_TIL_dom,superfamily_TIL_dom,smart_Nidogen_extracell_dom,smart_VWC_out,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_EG-like_dom,smart_ZP_dom,pfscan_ZP_dom	-	no_errors	TECTA	HGNC	ENSG00000109927				183	0	0	116	50	30.1205
TECTA	0	genome.wustl.edu	37	11	121037433	121037433	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	11	121037433	121037433	G	T	SNP	TECTA	ENST00000264037	human	ensembl	74_37	+1	known	missense	c.5530	p.D1844Y	1.000	pfam_ZP_dom,smart_ZP_dom,pfscan_ZP_dom	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_ZP_dom,pfam_Nidogen_extracell_dom,pfam_TIL_dom,superfamily_TIL_dom,smart_Nidogen_extracell_dom,smart_VWC_out,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_EG-like_dom,smart_ZP_dom,pfscan_ZP_dom	-	no_errors	TECTA	HGNC	ENSG00000109927				103	0	0	97	25	20.4918
TECTA	0	genome.wustl.edu	37	11	121038774	121038774	+	Silent	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	11	121038774	121038774	G	A	SNP	TECTA	ENST00000264037	human	ensembl	74_37	+1	known	silent	c.5598	p.T1866	0.955	pfam_ZP_dom,smart_ZP_dom,pfscan_ZP_dom	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_ZP_dom,pfam_Nidogen_extracell_dom,pfam_TIL_dom,superfamily_TIL_dom,smart_Nidogen_extracell_dom,smart_VWC_out,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_EG-like_dom,smart_ZP_dom,pfscan_ZP_dom	-	no_errors	TECTA	HGNC	ENSG00000109927				140	0	0	85	31	26.7241
OR10G7	0	genome.wustl.edu	37	11	123909354	123909354	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	11	123909354	123909354	A	G	SNP	OR10G7	ENST00000330487	human	ensembl	74_37	-1	known	missense	c.355	p.Y119H	0.998	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR10G7	HGNC	ENSG00000182634				187	0	0	164	37	18.408
VWA5A	0	genome.wustl.edu	37	11	124007961	124007961	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	11	124007961	124007961	T	C	SNP	VWA5A	ENST00000392748	human	ensembl	74_37	+1	known	missense	c.1865	p.I622T	0.000	NULL	pfam_VIT,pfam_VWF_A,smart_VIT,smart_VWF_A,pfscan_VWF_A	-	no_errors	VWA5A	HGNC	ENSG00000110002				92	0	0	79	11	12.2222
MUC5B	0	genome.wustl.edu	37	11	1263838	1263838	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	11	1263838	1263838	C	A	SNP	MUC5B	ENST00000447027	human	ensembl	74_37	+1	known	missense	c.5737	p.P1913T	0.020	NULL	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,pfam_VWF_C,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_C	-	no_errors	MUC5B	HGNC	ENSG00000117983				100	0	0	64	18	21.9512
NFRKB	0	genome.wustl.edu	37	11	129745274	129745274	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	11	129745274	129745274	G	A	SNP	NFRKB	ENST00000524794	human	ensembl	74_37	-1	known	missense	c.1907	p.A636V	1.000	NULL	NULL	-	no_errors	NFRKB	HGNC	ENSG00000170322				25	0	0	15	10	40
KRTAP5-5	0	genome.wustl.edu	37	11	1651484	1651484	+	Silent	SNP	C	C	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	11	1651484	1651484	C	A	SNP	KRTAP5-5	ENST00000399676	human	ensembl	74_37	+1	known	silent	c.414	p.G138	0.983	NULL	NULL	-	no_errors	KRTAP5-5	HGNC	ENSG00000185940				58	0	0	49	13	20.9677
C11orf58	0	genome.wustl.edu	37	11	16769659	16769659	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	11	16769659	16769659	C	T	SNP	C11orf58	ENST00000228136	human	ensembl	74_37	+1	known	missense	c.163	p.R55C	1.000	NULL	NULL	-	no_errors	C11orf58	HGNC	ENSG00000110696				70	0	0	47	18	27.6923
GTF2H1	0	genome.wustl.edu	37	11	18369452	18369452	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	11	18369452	18369452	C	T	SNP	GTF2H1	ENST00000265963	human	ensembl	74_37	+1	known	missense	c.1039	p.P347S	1.000	NULL	pfam_BSD,pfam_TFIIH_BTF_p62_N,smart_BSD,pfscan_BSD	-	no_errors	GTF2H1	HGNC	ENSG00000110768				67	0	0	55	18	24.6575
SYT8	0	genome.wustl.edu	37	11	1858262	1858262	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	11	1858262	1858262	C	T	SNP	SYT8	ENST00000381968	human	ensembl	74_37	+1	known	missense	c.908	p.T303M	0.972	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom,prints_Synaptotagmin	-	no_errors	SYT8	HGNC	ENSG00000149043				137	0	0	96	18	15.7895
SPTY2D1	0	genome.wustl.edu	37	11	18637193	18637193	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	11	18637193	18637193	G	A	SNP	SPTY2D1	ENST00000336349	human	ensembl	74_37	-1	known	nonsense	c.628	p.R210*	1.000	NULL	pfam_Chromatin_SPT2,smart_Chromatin_SPT2	-	no_errors	SPTY2D1	HGNC	ENSG00000179119				288	0	0	250	86	25.5952
NAV2	0	genome.wustl.edu	37	11	19955098	19955098	+	Silent	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	11	19955098	19955098	C	T	SNP	NAV2	ENST00000396087	human	ensembl	74_37	+1	known	silent	c.1377	p.F459	0.841	NULL	pfam_CH-domain,superfamily_CH-domain,superfamily_P-loop_NTPase,smart_CH-domain,smart_AAA+_ATPase,pfscan_CH-domain	-	no_errors	NAV2	HGNC	ENSG00000166833				68	0	0	48	21	30.4348
PRMT3	0	genome.wustl.edu	37	11	20424486	20424486	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	11	20424486	20424486	T	C	SNP	PRMT3	ENST00000331079	human	ensembl	74_37	+1	known	missense	c.727	p.Y243H	1.000	pfam_mo5U34_MeTrfas-like,pfam_Arg_MeTrfase	pfam_Ribosomal-L11_MeTrfase_PrmA,pfam_mo5U34_MeTrfas-like,pfam_Methyltransf_11,pfam_Arg_MeTrfase,pfam_Small_mtfrase_dom,pfam_tRNA_Trfase_Trm5/Tyw2	-	no_errors	PRMT3	HGNC	ENSG00000185238				161	0	0	143	13	8.33333
TSSC4	0	genome.wustl.edu	37	11	2424179	2424179	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	11	2424179	2424179	C	T	SNP	TSSC4	ENST00000333256	human	ensembl	74_37	+1	known	missense	c.316	p.R106W	0.012	NULL	NULL	-	no_errors	TSSC4	HGNC	ENSG00000184281				9	0	0	12	8	40
NLRP6	0	genome.wustl.edu	37	11	281443	281443	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	11	281443	281443	G	A	SNP	NLRP6	ENST00000312165	human	ensembl	74_37	+1	known	missense	c.1709	p.R570H	0.012	NULL	pfam_DAPIN,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP6	HGNC	ENSG00000174885				41	0	0	29	13	30.9524
NLRP6	0	genome.wustl.edu	37	11	281721	281721	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	11	281721	281721	G	A	SNP	NLRP6	ENST00000312165	human	ensembl	74_37	+1	known	missense	c.1987	p.V663M	0.101	NULL	pfam_DAPIN,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP6	HGNC	ENSG00000174885				132	0	0	103	39	27.4648
CCDC73	0	genome.wustl.edu	37	11	32635417	32635417	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	11	32635417	32635417	T	A	SNP	CCDC73	ENST00000335185	human	ensembl	74_37	-1	known	missense	c.2447	p.N816I	0.739	NULL	NULL	-	no_errors	CCDC73	HGNC	ENSG00000186714				140	0	0	111	25	18.3824
QSER1	0	genome.wustl.edu	37	11	32953933	32953933	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	11	32953933	32953933	G	T	SNP	QSER1	ENST00000399302	human	ensembl	74_37	+1	known	nonsense	c.742	p.G248*	1.000	NULL	NULL	-	no_errors	QSER1	HGNC	ENSG00000060749				108	0	0	76	25	24.7525
DEPDC7	0	genome.wustl.edu	37	11	33050184	33050184	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	11	33050184	33050184	C	T	SNP	DEPDC7	ENST00000241051	human	ensembl	74_37	+1	known	missense	c.628	p.R210C	1.000	NULL	pfam_DEP_dom,smart_DEP_dom,pfscan_DEP_dom	-	no_errors	DEPDC7	HGNC	ENSG00000121690				73	0	0	59	29	32.9545
NAT10	0	genome.wustl.edu	37	11	34145925	34145925	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	11	34145925	34145925	G	A	SNP	NAT10	ENST00000257829	human	ensembl	74_37	+1	known	missense	c.1085	p.R362Q	0.989	pfam_Helicase_dom,superfamily_P-loop_NTPase	pfam_Helicase_dom,pfam_DUF1726,superfamily_Acyl_CoA_acyltransferase,superfamily_P-loop_NTPase,pfscan_GNAT_dom	-	no_errors	NAT10	HGNC	ENSG00000135372				122	1	0.813008	101	33	24.6269
ABTB2	0	genome.wustl.edu	37	11	34181842	34181842	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	11	34181842	34181842	G	T	SNP	ABTB2	ENST00000435224	human	ensembl	74_37	-1	known	missense	c.2456	p.P819H	1.000	superfamily_BTB/POZ_fold	pfam_BTB_POZ,pfam_Ankyrin_rpt,superfamily_Histone-fold,superfamily_BTB/POZ_fold,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_BTB/POZ-like,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_BTB/POZ-like	-	no_errors	ABTB2	HGNC	ENSG00000166016				46	0	0	26	11	29.7297
CHRNA10	0	genome.wustl.edu	37	11	3687702	3687702	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	11	3687702	3687702	G	A	SNP	CHRNA10	ENST00000250699	human	ensembl	74_37	-1	known	missense	c.988	p.R330C	1.000	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_Nicotinic_acetylcholine_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	CHRNA10	HGNC	ENSG00000129749				109	1	0.909091	74	18	19.5652
PGAP2	0	genome.wustl.edu	37	11	3845180	3845180	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	11	3845180	3845180	G	A	SNP	PGAP2	ENST00000278243	human	ensembl	74_37	+1	known	missense	c.416	p.R139H	1.000	pfam_Frag1/DRAM/Sfk1	pfam_Frag1/DRAM/Sfk1	-	no_errors	PGAP2	HGNC	ENSG00000148985				132	0	0	88	46	34.3284
ACCSL	0	genome.wustl.edu	37	11	44074571	44074571	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	11	44074571	44074571	C	T	SNP	ACCSL	ENST00000378832	human	ensembl	74_37	+1	known	missense	c.901	p.L301F	1.000	pfam_Aminotransferase_I/II,superfamily_PyrdxlP-dep_Trfase	pfam_Aminotransferase_I/II,superfamily_PyrdxlP-dep_Trfase	-	no_errors	ACCSL	HGNC	ENSG00000205126				105	0	0	72	34	32.0755
CD82	0	genome.wustl.edu	37	11	44626950	44626950	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	11	44626950	44626950	G	A	SNP	CD82	ENST00000227155	human	ensembl	74_37	+1	known	missense	c.307	p.G103R	0.965	pfam_Tetraspanin/Peripherin,prints_Tetraspanin	pfam_Tetraspanin/Peripherin,superfamily_Tetraspanin_EC2,prints_Tetraspanin	-	no_errors	CD82	HGNC	ENSG00000085117				95	0	0	64	17	20.9877
OR52K2	0	genome.wustl.edu	37	11	4470665	4470665	+	Silent	SNP	T	T	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	11	4470665	4470665	T	C	SNP	OR52K2	ENST00000325719	human	ensembl	74_37	+1	known	silent	c.96	p.P32	0.939	prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR52K2	HGNC	ENSG00000181963				146	0	0	120	28	18.9189
OR52K2	0	genome.wustl.edu	37	11	4470695	4470695	+	Silent	SNP	T	T	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	11	4470695	4470695	T	A	SNP	OR52K2	ENST00000325719	human	ensembl	74_37	+1	known	silent	c.126	p.L42	0.532	pfam_7TM_GPCR_olfarory/Srsx,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR52K2	HGNC	ENSG00000181963				190	0	0	140	30	17.6471
OR52K2	0	genome.wustl.edu	37	11	4470698	4470698	+	Silent	SNP	A	A	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	11	4470698	4470698	A	C	SNP	OR52K2	ENST00000325719	human	ensembl	74_37	+1	known	silent	c.129	p.G43	0.992	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR52K2	HGNC	ENSG00000181963				192	0	0	142	29	16.9591
CHST1	0	genome.wustl.edu	37	11	45671304	45671304	+	Silent	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	11	45671304	45671304	C	T	SNP	CHST1	ENST00000308064	human	ensembl	74_37	-1	known	silent	c.1170	p.S390	0.836	pirsf_Carbohydrate_sulfotransferase	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase,pirsf_Carbohydrate_sulfotransferase	-	no_errors	CHST1	HGNC	ENSG00000175264				111	0	0	68	30	30.6122
CREB3L1	0	genome.wustl.edu	37	11	46334005	46334005	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	11	46334005	46334005	C	T	SNP	CREB3L1	ENST00000288400	human	ensembl	74_37	+1	known	missense	c.883	p.R295W	1.000	pfam_bZIP,superfamily_TF_DNA-bd,smart_bZIP,pfscan_bZIP,prints_Leuzip_CREB	pfam_bZIP,superfamily_TF_DNA-bd,smart_bZIP,pfscan_bZIP,prints_Leuzip_CREB	-	no_errors	CREB3L1	HGNC	ENSG00000157613				45	0	0	33	8	19.5122
CHRM4	0	genome.wustl.edu	37	11	46407256	46407256	+	Silent	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	11	46407256	46407256	C	T	SNP	CHRM4	ENST00000433765	human	ensembl	74_37	-1	known	silent	c.852	p.P284	0.043	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Musac_Ach_rcpt,prints_GPCR_Rhodpsn,prints_Musac_Ach_M4_rcpt	-	no_errors	CHRM4	HGNC	ENSG00000180720				32	0	0	24	12	33.3333
MADD	0	genome.wustl.edu	37	11	47336824	47336824	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	11	47336824	47336824	G	T	SNP	MADD	ENST00000311027	human	ensembl	74_37	+1	known	missense	c.4323	p.Q1441H	1.000	NULL	pfam_DENN_dom,pfam_uDENN_dom,pfam_dDENN_dom,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom	-	no_errors	MADD	HGNC	ENSG00000110514				71	0	0	45	19	29.6875
PSMC3	0	genome.wustl.edu	37	11	47441881	47441881	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	11	47441881	47441881	A	G	SNP	PSMC3	ENST00000298852	human	ensembl	74_37	-1	known	missense	c.1061	p.F354S	1.000	pfam_ATPase_AAA_core,superfamily_P-loop_NTPase,smart_AAA+_ATPase,tigrfam_26S_Psome_P45	pfam_ATPase_AAA_core,pfam_ATPase_dyneun-rel_AAA,pfam_DNA_helicase_Holl-junc_RuvB_N,superfamily_P-loop_NTPase,smart_AAA+_ATPase,tigrfam_26S_Psome_P45	-	no_errors	PSMC3	HGNC	ENSG00000165916				46	0	0	36	14	28
PTDSS2	0	genome.wustl.edu	37	11	490481	490481	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	11	490481	490481	G	C	SNP	PTDSS2	ENST00000308020	human	ensembl	74_37	+1	known	missense	c.1363	p.G455R	0.969	NULL	pfam_PSS	-	no_errors	PTDSS2	HGNC	ENSG00000174915				50	0	0	41	4	8.88889
OR4A5	0	genome.wustl.edu	37	11	51412117	51412117	+	Silent	SNP	T	T	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	11	51412117	51412117	T	C	SNP	OR4A5	ENST00000319760	human	ensembl	74_37	-1	known	silent	c.279	p.Q93	0.001	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4A5	HGNC	ENSG00000221840				114	0	0	95	6	5.94059
OR5L1	0	genome.wustl.edu	37	11	55579099	55579099	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	11	55579099	55579099	T	C	SNP	OR5L1	ENST00000333973	human	ensembl	74_37	+1	known	missense	c.157	p.S53P	0.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR5L1	HGNC	ENSG00000186117				355	0	0	269	101	27.2973
OR52E8	0	genome.wustl.edu	37	11	5878374	5878374	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	11	5878374	5878374	G	A	SNP	OR52E8	ENST00000537935	human	ensembl	74_37	-1	known	missense	c.559	p.H187Y	0.991	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR52E8	HGNC	ENSG00000183269				155	0	0	96	29	23.2
DTX4	0	genome.wustl.edu	37	11	58956242	58956242	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	11	58956242	58956242	T	G	SNP	DTX4	ENST00000227451	human	ensembl	74_37	+1	known	missense	c.970	p.S324A	0.999	NULL	pfam_WWE-dom,pfam_Znf_C3HC4_RING-type,smart_WWE-dom_subgr,smart_Znf_RING,pfscan_WWE-dom,pfscan_Znf_RING	-	no_errors	DTX4	HGNC	ENSG00000110042				49	0	0	48	13	21.3115
OR52L1	0	genome.wustl.edu	37	11	6007283	6007283	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	11	6007283	6007283	A	T	SNP	OR52L1	ENST00000332249	human	ensembl	74_37	-1	known	missense	c.878	p.L293H	0.960	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR52L1	HGNC	ENSG00000183313				32	0	0	19	4	17.3913
TMEM132A	0	genome.wustl.edu	37	11	60696229	60696229	+	Silent	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	11	60696229	60696229	C	T	SNP	TMEM132A	ENST00000005286	human	ensembl	74_37	+1	known	silent	c.663	p.S221	0.001	NULL	NULL	-	no_errors	TMEM132A	HGNC	ENSG00000006118				49	0	0	26	11	29.7297
CD5	0	genome.wustl.edu	37	11	60889125	60889125	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	11	60889125	60889125	G	A	SNP	CD5	ENST00000347785	human	ensembl	74_37	+1	known	missense	c.848	p.S283N	0.000	pfam_SRCR,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_SRCR,prints_Tcell_CD5	pfam_SRCR,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_SRCR,prints_Tcell_CD5,prints_SRCR	-	no_errors	CD5	HGNC	ENSG00000110448				88	0	0	70	25	26.3158
DAGLA	0	genome.wustl.edu	37	11	61511463	61511463	+	Silent	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	11	61511463	61511463	C	T	SNP	DAGLA	ENST00000257215	human	ensembl	74_37	+1	known	silent	c.2631	p.D877	0.000	NULL	pfam_Lipase_3	-	no_errors	DAGLA	HGNC	ENSG00000134780				76	0	0	57	23	28.75
RAB3IL1	0	genome.wustl.edu	37	11	61675603	61675603	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	11	61675603	61675603	G	A	SNP	RAB3IL1	ENST00000394836	human	ensembl	74_37	-1	known	missense	c.187	p.R63C	0.998	NULL	pfam_Sec2p	-	no_errors	RAB3IL1	HGNC	ENSG00000167994				23	0	0	20	10	33.3333
INCENP	0	genome.wustl.edu	37	11	61916277	61916277	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	11	61916277	61916277	G	A	SNP	INCENP	ENST00000394818	human	ensembl	74_37	+1	known	missense	c.2350	p.A784T	0.001	NULL	pfam_INCENP_N,pfam_Inner_centromere_prot_ARK-bd	-	no_errors	INCENP	HGNC	ENSG00000149503				29	0	0	20	2	9.09091
SNHG1	0	genome.wustl.edu	37	11	62620803	62620803	+	RNA	SNP	T	T	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	11	62620803	62620803	T	C	SNP	SNHG1	ENST00000364799	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	SNHG1	HGNC	ENSG00000255717				55	0	0	58	4	6.45161
CNGA4	0	genome.wustl.edu	37	11	6265475	6265475	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	11	6265475	6265475	G	A	SNP	CNGA4	ENST00000379936	human	ensembl	74_37	+1	known	missense	c.1564	p.A522T	0.988	NULL	pfam_cNMP-bd_dom,pfam_Ion_trans_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom	-	no_errors	CNGA4	HGNC	ENSG00000132259				90	0	0	54	14	20.5882
SLC22A24	0	genome.wustl.edu	37	11	62911109	62911109	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	11	62911109	62911109	C	T	SNP	SLC22A24	ENST00000326192	human	ensembl	74_37	-1	known	missense	c.143	p.R48H	1.000	NULL	pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC22A24	HGNC	ENSG00000197658				48	0	0	38	15	28.3019
PRDX5	0	genome.wustl.edu	37	11	64088156	64088156	+	Silent	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	11	64088156	64088156	G	A	SNP	PRDX5	ENST00000265462	human	ensembl	74_37	+1	known	silent	c.330	p.E110	0.999	pfam_Redoxin,pfam_AhpC/TSA,superfamily_Thioredoxin-like_fold	pfam_Redoxin,pfam_AhpC/TSA,superfamily_Thioredoxin-like_fold	-	no_errors	PRDX5	HGNC	ENSG00000126432				151	0	0	101	39	27.8571
CCDC88B	0	genome.wustl.edu	37	11	64108903	64108903	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	11	64108903	64108903	G	A	SNP	CCDC88B	ENST00000356786	human	ensembl	74_37	+1	known	missense	c.458	p.R153Q	1.000	pfam_Hook-related_fam	pfam_Hook-related_fam	-	no_errors	CCDC88B	HGNC	ENSG00000168071				65	0	0	45	16	26.2295
SLC22A20	0	genome.wustl.edu	37	11	65000689	65000689	+	RNA	SNP	T	T	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	11	65000689	65000689	T	C	SNP	SLC22A20	ENST00000525437	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	SLC22A20	HGNC	ENSG00000197847				61	0	0	44	19	30.1587
ENSG00000255680	0	genome.wustl.edu	37	11	6640724	6640724	+	RNA	SNP	A	A	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	11	6640724	6640724	A	G	SNP	ENSG00000255680	ENST00000545572	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.140	-	-	-	no_errors	RP11-732A19.9	Clone_based_vega_gene	ENSG00000255680				104	0	0	54	25	31.6456
DCHS1	0	genome.wustl.edu	37	11	6645998	6645998	+	Silent	SNP	A	A	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	11	6645998	6645998	A	C	SNP	DCHS1	ENST00000299441	human	ensembl	74_37	-1	known	silent	c.7248	p.A2416	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	DCHS1	HGNC	ENSG00000166341				28	0	0	20	6	23.0769
DCHS1	0	genome.wustl.edu	37	11	6655431	6655431	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	11	6655431	6655431	C	A	SNP	DCHS1	ENST00000299441	human	ensembl	74_37	-1	known	missense	c.1904	p.S635I	0.992	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	DCHS1	HGNC	ENSG00000166341				128	0	0	80	38	32.2034
KDM2A	0	genome.wustl.edu	37	11	67010480	67010480	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	11	67010480	67010480	A	G	SNP	KDM2A	ENST00000529006	human	ensembl	74_37	+1	known	missense	c.1480	p.I494V	0.573	NULL	pfam_Znf_CXXC,pfam_F-box_dom,pfam_JmjC_dom,superfamily_Znf_FYVE_PHD,smart_JmjC_dom,smart_Znf_PHD,smart_Leu-rich_rpt_Cys-con_subtyp,pfscan_JmjC_dom,pfscan_Znf_PHD-finger,pfscan_Znf_CXXC	-	no_errors	KDM2A	HGNC	ENSG00000173120				78	0	0	45	22	32.8358
KDM2A	0	genome.wustl.edu	37	11	67018001	67018001	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	11	67018001	67018001	C	A	SNP	KDM2A	ENST00000529006	human	ensembl	74_37	+1	known	missense	c.2500	p.R834S	1.000	NULL	pfam_Znf_CXXC,pfam_F-box_dom,pfam_JmjC_dom,superfamily_Znf_FYVE_PHD,smart_JmjC_dom,smart_Znf_PHD,smart_Leu-rich_rpt_Cys-con_subtyp,pfscan_JmjC_dom,pfscan_Znf_PHD-finger,pfscan_Znf_CXXC	-	no_errors	KDM2A	HGNC	ENSG00000173120				43	0	0	48	3	5.88235
ANKRD13D	0	genome.wustl.edu	37	11	67068551	67068551	+	Silent	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	11	67068551	67068551	C	T	SNP	ANKRD13D	ENST00000511455	human	ensembl	74_37	+1	known	silent	c.1164	p.N388	0.807	pfam_ANKRD13	pfam_ANKRD13,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Ubiquitin-int_motif,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Ubiquitin-int_motif	-	no_errors	ANKRD13D	HGNC	ENSG00000172932				51	0	0	47	18	27.6923
CARNS1	0	genome.wustl.edu	37	11	67190978	67190978	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	11	67190978	67190978	G	A	SNP	CARNS1	ENST00000445895	human	ensembl	74_37	+1	known	missense	c.1759	p.G587S	0.995	NULL	superfamily_PreATP-grasp_dom,superfamily_TIL_dom,pfscan_ATP-grasp	-	no_errors	CARNS1	HGNC	ENSG00000172508				28	0	0	16	6	27.2727
TBX10	0	genome.wustl.edu	37	11	67399140	67399140	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	11	67399140	67399140	G	A	SNP	TBX10	ENST00000335385	human	ensembl	74_37	-1	known	missense	c.1094	p.P365L	0.000	NULL	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box,prints_TF_T-box	-	no_errors	TBX10	HGNC	ENSG00000167800				19	0	0	15	10	40
DEAF1	0	genome.wustl.edu	37	11	686886	686886	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	11	686886	686886	G	A	SNP	DEAF1	ENST00000382409	human	ensembl	74_37	-1	known	missense	c.776	p.A259V	0.996	pfam_SAND_dom,superfamily_SAND_dom-like,smart_SAND_dom,pfscan_SAND_dom	pfam_SAND_dom,pfam_Znf_MYND,superfamily_SAND_dom-like,smart_SAND_dom,pfscan_Znf_MYND,pfscan_SAND_dom	-	no_errors	DEAF1	HGNC	ENSG00000177030				52	0	0	43	16	27.1186
SYT9	0	genome.wustl.edu	37	11	7324420	7324420	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	11	7324420	7324420	T	G	SNP	SYT9	ENST00000318881	human	ensembl	74_37	+1	known	missense	c.296	p.L99R	1.000	NULL	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom,prints_Synaptotagmin,prints_C2_dom	-	no_errors	SYT9	HGNC	ENSG00000170743				123	0	0	113	41	26.6234
DNAJB13	0	genome.wustl.edu	37	11	73677268	73677268	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	11	73677268	73677268	G	A	SNP	DNAJB13	ENST00000339764	human	ensembl	74_37	+1	known	missense	c.578	p.R193H	0.968	superfamily_HSP40/DnaJ_pept-bd	pfam_DnaJ_C,pfam_DnaJ_domain,superfamily_DnaJ_domain,superfamily_HSP40/DnaJ_pept-bd,smart_DnaJ_domain,pfscan_DnaJ_domain,prints_DnaJ_domain	-	no_errors	DNAJB13	HGNC	ENSG00000187726				25	0	0	20	4	16.6667
SERPINH1	0	genome.wustl.edu	37	11	75282937	75282937	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	11	75282937	75282937	G	A	SNP	SERPINH1	ENST00000358171	human	ensembl	74_37	+1	known	missense	c.1066	p.A356T	1.000	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	-	no_errors	SERPINH1	HGNC	ENSG00000149257				53	0	0	33	13	28.2609
RSF1	0	genome.wustl.edu	37	11	77378348	77378348	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	11	77378348	77378348	C	T	SNP	RSF1	ENST00000308488	human	ensembl	74_37	-1	known	missense	c.3940	p.A1314T	0.995	NULL	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	RSF1	HGNC	ENSG00000048649				100	0	0	87	32	26.8908
FAM181B	0	genome.wustl.edu	37	11	82444597	82444597	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	11	82444597	82444597	C	T	SNP	FAM181B	ENST00000329203	human	ensembl	74_37	-1	known	missense	c.175	p.V59M	1.000	NULL	NULL	-	no_errors	FAM181B	HGNC	ENSG00000182103				22	0	0	17	6	26.087
DLG2	0	genome.wustl.edu	37	11	83770417	83770417	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	11	83770417	83770417	C	T	SNP	DLG2	ENST00000376104	human	ensembl	74_37	-1	known	missense	c.860	p.R287H	1.000	superfamily_PDZ,smart_PDZ,pirsf_M-assoc_guanylate_kinase,pfscan_PDZ	pfam_PDZ,pfam_GK/Ca_channel_bsu,pfam_MAGUK_PEST_N,pfam_PDZ_assoc,pfam_L27_1,pfam_SH3_2,pfam_SH3_domain,superfamily_P-loop_NTPase,superfamily_SH3_domain,superfamily_PDZ,smart_PDZ,smart_SH3_domain,smart_GK/Ca_channel_bsu,pirsf_M-assoc_guanylate_kinase,pfscan_L27,pfscan_PDZ,pfscan_SH3_domain,pfscan_Guanylate_kin-like	-	no_errors	DLG2	HGNC	ENSG00000150672				139	0	0	93	45	32.6087
TMEM126A	0	genome.wustl.edu	37	11	85367435	85367435	+	Silent	SNP	T	T	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	11	85367435	85367435	T	C	SNP	TMEM126A	ENST00000304511	human	ensembl	74_37	+1	known	silent	c.478	p.L160	0.546	pfam_DUF1370_TMEM126	pfam_DUF1370_TMEM126	-	no_errors	TMEM126A	HGNC	ENSG00000171202				55	0	0	50	10	16.6667
CCDC89	0	genome.wustl.edu	37	11	85396776	85396776	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	11	85396776	85396776	T	G	SNP	CCDC89	ENST00000316398	human	ensembl	74_37	-1	known	missense	c.398	p.H133P	0.995	NULL	NULL	-	no_errors	CCDC89	HGNC	ENSG00000179071				167	0	0	124	44	26.1905
FZD4	0	genome.wustl.edu	37	11	86663069	86663069	+	Silent	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	11	86663069	86663069	G	A	SNP	FZD4	ENST00000531380	human	ensembl	74_37	-1	known	silent	c.729	p.I243	0.977	pfam_Frizzled,pfscan_GPCR_2-like,prints_Frizzled	pfam_Frizzled,pfam_Frizzled_dom,superfamily_Frizzled_dom,smart_Frizzled_dom,pfscan_Frizzled_dom,pfscan_GPCR_2-like,prints_Frizzled	-	no_errors	FZD4	HGNC	ENSG00000174804				36	0	0	37	14	27.451
CTSC	0	genome.wustl.edu	37	11	88068203	88068203	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	11	88068203	88068203	C	T	SNP	CTSC	ENST00000227266	human	ensembl	74_37	-1	known	missense	c.220	p.A74T	0.999	pfam_CathepsinC_exc	pfam_Peptidase_C1A_C,pfam_CathepsinC_exc,smart_Peptidase_C1A_C,prints_Peptidase_C1A_C	-	no_errors	CTSC	HGNC	ENSG00000109861				93	0	0	71	6	7.79221
GRM5	0	genome.wustl.edu	37	11	88258487	88258487	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	11	88258487	88258487	T	G	SNP	GRM5	ENST00000305447	human	ensembl	74_37	-1	known	missense	c.2716	p.T906P	1.000	NULL	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_Metabotropic_Glu_rcpt_Homer-bd,pfam_GPCR_3_9-Cys_dom,superfamily_Peripla_BP_I,prints_GPCR_3_mtglu_rcpt_5,prints_GPCR_3,prints_GPCR_3_mtglu_rcpt,prints_GPCR_3_mtglu_rcpt_1,pfscan_GPCR_3_C	-	no_errors	GRM5	HGNC	ENSG00000168959				575	0	0	368	126	25.5061
NOX4	0	genome.wustl.edu	37	11	89173856	89173856	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	11	89173856	89173856	C	A	SNP	NOX4	ENST00000413594	human	ensembl	74_37	-1	known	missense	c.538	p.V180F	1.000	pfam_Fe3_Rdtase_TM_dom	pfam_Fe_red_NAD-bd_6,pfam_Fe3_Rdtase_TM_dom,pfam_FAD-bd_8,superfamily_Riboflavin_synthase-like_b-brl,prints_Cyt_b245_heavy_chain	-	no_errors	NOX4	HGNC	ENSG00000086991				19	0	0	18	3	14.2857
FAT3	0	genome.wustl.edu	37	11	92577541	92577541	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	11	92577541	92577541	C	T	SNP	FAT3	ENST00000298047	human	ensembl	74_37	+1	known	missense	c.11008	p.R3670W	1.000	NULL	pfam_Cadherin,pfam_Laminin_G,pfam_EGF-like_Ca-bd_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,smart_EG-like_dom,smart_Laminin_G,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT3	HGNC	ENSG00000165323				68	0	0	46	19	29.2308
GPR83	0	genome.wustl.edu	37	11	94113477	94113477	+	Silent	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	11	94113477	94113477	C	T	SNP	GPR83	ENST00000243673	human	ensembl	74_37	-1	known	silent	c.1110	p.Q370	0.976	NULL	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_NPY_rcpt	-	no_errors	GPR83	HGNC	ENSG00000123901				110	0	0	111	32	22.3776
JRKL	0	genome.wustl.edu	37	11	96124882	96124882	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	11	96124882	96124882	T	C	SNP	JRKL	ENST00000332349	human	ensembl	74_37	+1	known	missense	c.1069	p.W357R	1.000	pfam_DDE_SF_endonuclease_CENPB-like	pfam_DDE_SF_endonuclease_CENPB-like,pfam_HTH_CenpB_DNA-bd_dom,pfam_HTH_Psq,superfamily_Homeodomain-like,smart_HTH_CenpB_DNA-bd_dom,pfscan_HTH_Psq	-	no_errors	JRKL	HGNC	ENSG00000183340				141	0	0	154	29	15.847
SBF2	0	genome.wustl.edu	37	11	9983568	9983568	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	11	9983568	9983568	T	G	SNP	SBF2	ENST00000256190	human	ensembl	74_37	-1	known	missense	c.1796	p.N599T	1.000	pfam_SBF2	pfam_SBF2,pfam_DENN_dom,pfam_uDENN_dom,pfam_Myotubularin-like_Pase_dom,pfam_dDENN_dom,pfam_Pleckstrin_homology,pfam_GRAM,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,smart_GRAM,smart_Pleckstrin_homology,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom,pfscan_Pleckstrin_homology	-	no_errors	SBF2	HGNC	ENSG00000133812				111	1	0.892857	78	31	28.4404
ANKS1B	0	genome.wustl.edu	37	12	100166822	100166822	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	12	100166822	100166822	T	G	SNP	ANKS1B	ENST00000329257	human	ensembl	74_37	-1	known	missense	c.1006	p.K336Q	1.000	NULL	pfam_Ankyrin_rpt,pfam_SAM_type1,pfam_PTB/PI_dom,pfam_SAM_2,pfam_PTB,superfamily_Ankyrin_rpt-contain_dom,superfamily_SAM/pointed,smart_Ankyrin_rpt,smart_SAM,smart_PTB/PI_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_PTB/PI_dom,pfscan_SAM,prints_Ankyrin_rpt	-	no_errors	ANKS1B	HGNC	ENSG00000185046				83	0	0	52	16	23.5294
UTP20	0	genome.wustl.edu	37	12	101763573	101763573	+	Silent	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	12	101763573	101763573	G	A	SNP	UTP20	ENST00000261637	human	ensembl	74_37	+1	known	silent	c.6459	p.E2153	0.005	superfamily_ARM-type_fold	pfam_DRIM,superfamily_ARM-type_fold	-	no_errors	UTP20	HGNC	ENSG00000120800				258	0	0	225	30	11.7647
MYBPC1	0	genome.wustl.edu	37	12	102025445	102025445	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	12	102025445	102025445	G	A	SNP	MYBPC1	ENST00000361466	human	ensembl	74_37	+1	known	missense	c.386	p.S129N	1.000	pfam_Ig_I-set,smart_Ig_sub	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	MYBPC1	HGNC	ENSG00000196091				115	0	0	130	7	5.10949
RAD52	0	genome.wustl.edu	37	12	1025529	1025529	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	12	1025529	1025529	C	T	SNP	RAD52	ENST00000536177	human	ensembl	74_37	-1	novel	missense	c.898	p.V300I	0.000	NULL	pfam_Rad52_Rad22,tigrfam_DNA_recomb/repair_Rad52	-	no_errors	RAD52	HGNC	ENSG00000002016				41	0	0	21	8	27.5862
STAB2	0	genome.wustl.edu	37	12	103981261	103981261	+	Silent	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	12	103981261	103981261	C	T	SNP	STAB2	ENST00000388887	human	ensembl	74_37	+1	known	silent	c.7	p.L3	0.828	NULL	pfam_FAS1_domain,pfam_Link,superfamily_C-type_lectin_fold,superfamily_FAS1_domain,superfamily_Growth_fac_rcpt_N_dom,smart_EG-like_dom,smart_EGF_laminin,smart_EGF-like_Ca-bd_dom,smart_FAS1_domain,smart_Link,pfscan_EG-like_dom,pfscan_FAS1_domain,pfscan_Link	-	no_errors	STAB2	HGNC	ENSG00000136011				51	0	0	53	4	7.01754
STAB2	0	genome.wustl.edu	37	12	104063344	104063344	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	12	104063344	104063344	A	G	SNP	STAB2	ENST00000388887	human	ensembl	74_37	+1	known	missense	c.2198	p.Y733C	0.423	NULL	pfam_FAS1_domain,pfam_Link,superfamily_C-type_lectin_fold,superfamily_FAS1_domain,superfamily_Growth_fac_rcpt_N_dom,smart_EG-like_dom,smart_EGF_laminin,smart_EGF-like_Ca-bd_dom,smart_FAS1_domain,smart_Link,pfscan_EG-like_dom,pfscan_FAS1_domain,pfscan_Link	-	no_errors	STAB2	HGNC	ENSG00000136011				150	0	0	93	30	24.3902
CORO1C	0	genome.wustl.edu	37	12	109042423	109042423	+	Silent	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	12	109042423	109042423	G	A	SNP	CORO1C	ENST00000420959	human	ensembl	74_37	-1	known	silent	c.1422	p.D474	1.000	NULL	pfam_DUF1900,pfam_DUF1899,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	CORO1C	HGNC	ENSG00000110880				167	0	0	99	27	21.4286
ACACB	0	genome.wustl.edu	37	12	109702967	109702967	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	12	109702967	109702967	G	T	SNP	ACACB	ENST00000338432	human	ensembl	74_37	+1	known	missense	c.6995	p.R2332L	1.000	pfam_Carboxyl_trans	pfam_AcCoA_COase_cen,pfam_Carboxyl_trans,pfam_CbamoylP_synth_lsu-like_ATP-bd,pfam_CarbamoylP_synth_lsu_N,pfam_Biotin_COase_C,pfam_Biotin_lipoyl,superfamily_PreATP-grasp_dom,superfamily_Rudment_hybrid_motif,superfamily_Single_hybrid_motif,smart_Biotin_COase_C,pfscan_ATP-grasp,pfscan_Biotin_carboxylation_dom,pfscan_COA_CT_N,pfscan_COA_CT_C,pfscan_Biotin_lipoyl	-	no_errors	ACACB	HGNC	ENSG00000076555				145	0	0	102	26	20.3125
MYO1H	0	genome.wustl.edu	37	12	109826650	109826650	+	Splice_Site	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	12	109826650	109826650	G	A	SNP	MYO1H	ENST00000431443	human	ensembl	74_37	+1	known	splice_site	c.126+1	e1+1	1.000	-	-	-	no_errors	MYO1H	HGNC	ENSG00000174527				418	0	0	331	106	24.2563
KCTD10	0	genome.wustl.edu	37	12	109889420	109889420	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	12	109889420	109889420	G	A	SNP	KCTD10	ENST00000228495	human	ensembl	74_37	-1	known	missense	c.922	p.R308W	1.000	NULL	pfam_T1-type_BTB,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like	-	no_errors	KCTD10	HGNC	ENSG00000110906				70	0	0	34	13	27.6596
KCTD10	0	genome.wustl.edu	37	12	109889456	109889456	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	12	109889456	109889456	G	A	SNP	KCTD10	ENST00000228495	human	ensembl	74_37	-1	known	missense	c.886	p.R296C	1.000	NULL	pfam_T1-type_BTB,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like	-	no_errors	KCTD10	HGNC	ENSG00000110906				54	0	0	39	14	26.4151
ATP2A2	0	genome.wustl.edu	37	12	110734412	110734412	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	12	110734412	110734412	T	C	SNP	ATP2A2	ENST00000552636	human	ensembl	74_37	+1	putative	missense	c.32	p.M11T	1.000	NULL	NULL	-	no_errors	ATP2A2	HGNC	ENSG00000174437				173	0	0	172	13	7.02703
BRAP	0	genome.wustl.edu	37	12	112116963	112116963	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	12	112116963	112116963	G	A	SNP	BRAP	ENST00000419234	human	ensembl	74_37	-1	known	missense	c.625	p.R209C	1.000	pfam_BRAP2	pfam_BRAP2,pfam_Znf_UBP,pfam_Znf_C3HC4_RING-type,superfamily_Znf_FYVE_PHD,smart_Znf_RING,smart_Znf_UBP,pfscan_Znf_RING,pfscan_Znf_UBP	-	no_errors	BRAP	HGNC	ENSG00000089234				72	0	0	60	19	24.0506
SLC8B1	0	genome.wustl.edu	37	12	113756814	113756814	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	12	113756814	113756814	G	A	SNP	SLC8B1	ENST00000202831	human	ensembl	74_37	-1	known	missense	c.757	p.R253W	0.006	NULL	pfam_NaCa_Exmemb	-	no_errors	SLC8B1	HGNC	ENSG00000089060				77	0	0	46	15	24.5902
FBXO21	0	genome.wustl.edu	37	12	117627076	117627076	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	12	117627076	117627076	G	A	SNP	FBXO21	ENST00000330622	human	ensembl	74_37	-1	known	missense	c.331	p.R111W	1.000	superfamily_F-box_dom	pfam_Hemimethylated_DNA-bd_dom,superfamily_Hemimethylated_DNA-bd_dom,superfamily_F-box_dom,tigrfam_Hemimethylated_DNA-bd_dom	-	no_errors	FBXO21	HGNC	ENSG00000135108				140	1	0.70922	111	44	28.3871
CCDC64	0	genome.wustl.edu	37	12	120510351	120510351	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	12	120510351	120510351	C	T	SNP	CCDC64	ENST00000257583	human	ensembl	74_37	+1	known	missense	c.73	p.R25C	1.000	NULL	NULL	-	no_errors	CCDC64	HGNC	ENSG00000135127				132	0	0	94	40	29.8507
CAMKK2	0	genome.wustl.edu	37	12	121678610	121678610	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	12	121678610	121678610	A	G	SNP	CAMKK2	ENST00000337174	human	ensembl	74_37	-1	known	missense	c.1616	p.V539A	0.994	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	CAMKK2	HGNC	ENSG00000110931				99	0	0	61	15	19.7368
KNTC1	0	genome.wustl.edu	37	12	123060120	123060120	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	12	123060120	123060120	T	C	SNP	KNTC1	ENST00000333479	human	ensembl	74_37	+1	known	missense	c.2413	p.Y805H	1.000	NULL	pfam_RZZ-complex_KNTC1/ROD_C,superfamily_Quino_amine_DH_bsu,superfamily_WD40_repeat_dom,superfamily_PAH	-	no_errors	KNTC1	HGNC	ENSG00000184445				17	0	0	12	4	25
HIP1R	0	genome.wustl.edu	37	12	123334461	123334461	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	12	123334461	123334461	T	G	SNP	HIP1R	ENST00000253083	human	ensembl	74_37	+1	known	missense	c.397	p.Y133D	0.999	pfam_ANTH_dom,pfam_Epsin_dom_N,superfamily_ENTH_VHS,smart_Epsin-like_N,pfscan_Epsin-like_N	pfam_ANTH_dom,pfam_ILWEQ_dom,pfam_Epsin_dom_N,superfamily_ENTH_VHS,smart_Epsin-like_N,smart_ILWEQ_dom,pfscan_Epsin-like_N,pfscan_ILWEQ_dom	-	no_errors	HIP1R	HGNC	ENSG00000130787				56	0	0	53	5	8.62069
EIF2B1	0	genome.wustl.edu	37	12	124111688	124111688	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	12	124111688	124111688	C	T	SNP	EIF2B1	ENST00000424014	human	ensembl	74_37	-1	known	missense	c.385	p.A129T	1.000	pfam_IF-2B-related	pfam_IF-2B-related	-	no_errors	EIF2B1	HGNC	ENSG00000111361				124	0	0	98	22	18.3333
DNAH10	0	genome.wustl.edu	37	12	124409638	124409638	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	12	124409638	124409638	G	T	SNP	DNAH10	ENST00000409039	human	ensembl	74_37	+1	known	missense	c.11454	p.L3818F	0.937	pfam_Dynein_heavy_dom	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,superfamily_PyrdxlP-dep_Trfase,smart_AAA+_ATPase	-	no_errors	DNAH10	HGNC	ENSG00000197653				73	0	0	49	28	36.3636
DNAH10	0	genome.wustl.edu	37	12	124419276	124419276	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	12	124419276	124419276	A	C	SNP	DNAH10	ENST00000409039	human	ensembl	74_37	+1	known	missense	c.13232	p.K4411T	1.000	pfam_Dynein_heavy_dom	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,superfamily_PyrdxlP-dep_Trfase,smart_AAA+_ATPase	-	no_errors	DNAH10	HGNC	ENSG00000197653				42	0	0	24	7	22.5806
NCOR2	0	genome.wustl.edu	37	12	124915170	124915170	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	12	124915170	124915170	C	T	SNP	NCOR2	ENST00000356219	human	ensembl	74_37	-1	known	missense	c.1046	p.R349H	1.000	NULL	pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	NCOR2	HGNC	ENSG00000196498				124	0	0	88	37	29.6
NCOR2	0	genome.wustl.edu	37	12	124968140	124968140	+	Splice_Site	SNP	A	A	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	12	124968140	124968140	A	G	SNP	NCOR2	ENST00000356219	human	ensembl	74_37	-1	known	splice_site	c.411+2	e3+2	0.998	-	-	-	no_errors	NCOR2	HGNC	ENSG00000196498				16	0	0	9	7	43.75
EP400	0	genome.wustl.edu	37	12	132491389	132491389	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	12	132491389	132491389	A	T	SNP	EP400	ENST00000333577	human	ensembl	74_37	+1	known	missense	c.3379	p.I1127F	1.000	pfam_SNF2_N,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_SNF2_N,pfam_Helicase/SANT-assoc_DNA-bd,pfam_Helicase_C,superfamily_P-loop_NTPase,superfamily_Homeodomain-like,smart_HAS_subgr,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Myb-like_dom,pfscan_Helicase/SANT-assoc_DNA-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	EP400	HGNC	ENSG00000183495				103	0	0	92	31	25.2033
P2RX2	0	genome.wustl.edu	37	12	133197136	133197136	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	12	133197136	133197136	G	T	SNP	P2RX2	ENST00000343948	human	ensembl	74_37	+1	known	missense	c.741	p.K247N	0.987	pfam_P2X_purnocptor,prints_P2X2_purnocptor,tigrfam_P2X_purnocptor	pfam_P2X_purnocptor,prints_P2X2_purnocptor,prints_P2X_purnocptor,tigrfam_P2X_purnocptor	-	no_errors	P2RX2	HGNC	ENSG00000187848				92	0	0	59	20	25.3165
POLE	0	genome.wustl.edu	37	12	133254211	133254211	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	12	133254211	133254211	C	T	SNP	POLE	ENST00000320574	human	ensembl	74_37	-1	known	missense	c.673	p.D225N	1.000	pfam_DNA-dir_DNA_pol_B_exonuc,superfamily_RNaseH-like_dom	pfam_DNA_pol_e_suA_C,pfam_DNA-dir_DNA_pol_B_exonuc,pfam_DNA-dir_DNA_pol_B_multi_dom,pfam_3'-5'_exonuclease_PolB-like,superfamily_RNaseH-like_dom,smart_DNA-dir_DNA_pol_B	-	no_errors	POLE	HGNC	ENSG00000177084				59	0	0	43	22	33.8462
ITPR2	0	genome.wustl.edu	37	12	26568326	26568326	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	12	26568326	26568326	C	T	SNP	ITPR2	ENST00000381340	human	ensembl	74_37	-1	known	missense	c.7216	p.V2406I	1.000	pfam_Ion_trans_dom	pfam_Ca-rel_channel,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ARM-type_fold,smart_MIR_motif,prints_InsP3_rcpt-bd,pfscan_MIR_motif	-	no_errors	ITPR2	HGNC	ENSG00000123104				129	0	0	140	56	28.5714
FGD4	0	genome.wustl.edu	37	12	32760948	32760948	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	12	32760948	32760948	C	T	SNP	FGD4	ENST00000427716	human	ensembl	74_37	+1	known	missense	c.1051	p.R351W	1.000	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_DH-domain	pfam_DH-domain,pfam_Pleckstrin_homology,pfam_Znf_FYVE,superfamily_DH-domain,superfamily_Znf_FYVE_PHD,smart_DH-domain,smart_Pleckstrin_homology,smart_Znf_FYVE,pfscan_Pleckstrin_homology,pfscan_Znf_FYVE-rel,pfscan_DH-domain	-	no_errors	FGD4	HGNC	ENSG00000139132				234	0	0	170	74	30.3279
PKP2	0	genome.wustl.edu	37	12	33031126	33031126	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	12	33031126	33031126	C	T	SNP	PKP2	ENST00000070846	human	ensembl	74_37	-1	known	missense	c.688	p.V230I	0.010	NULL	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	PKP2	HGNC	ENSG00000057294				56	0	0	44	17	27.8689
C12orf40	0	genome.wustl.edu	37	12	40041751	40041751	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	12	40041751	40041751	T	G	SNP	C12orf40	ENST00000324616	human	ensembl	74_37	+1	known	missense	c.542	p.L181R	0.002	NULL	NULL	-	no_errors	C12orf40	HGNC	ENSG00000180116				75	0	0	51	8	13.5593
CNTN1	0	genome.wustl.edu	37	12	41365252	41365252	+	Silent	SNP	T	T	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	12	41365252	41365252	T	C	SNP	CNTN1	ENST00000360099	human	ensembl	74_37	+1	known	silent	c.1821	p.G607	1.000	NULL	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	CNTN1	HGNC	ENSG00000018236				28	0	0	18	4	18.1818
KDM5A	0	genome.wustl.edu	37	12	420145	420145	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	12	420145	420145	G	A	SNP	KDM5A	ENST00000399788	human	ensembl	74_37	-1	known	missense	c.3122	p.P1041L	1.000	pfam_Lys_sp_deMease_like_dom	pfam_Lys_sp_deMease_like_dom,pfam_JmjC_dom,pfam_Znf_PHD-finger,pfam_ARID/BRIGHT_DNA-bd,pfam_Znf_C5HC2,pfam_TF_JmjN,superfamily_ARID/BRIGHT_DNA-bd,superfamily_Znf_FYVE_PHD,smart_TF_JmjN,smart_ARID/BRIGHT_DNA-bd,smart_Znf_PHD,smart_JmjC_dom,pfscan_TF_JmjN,pfscan_JmjC_dom,pfscan_Znf_PHD-finger,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	KDM5A	HGNC	ENSG00000073614				171	0	0	108	44	28.9474
RAPGEF3	0	genome.wustl.edu	37	12	48144859	48144859	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	12	48144859	48144859	C	T	SNP	RAPGEF3	ENST00000389212	human	ensembl	74_37	-1	known	missense	c.643	p.A215T	1.000	NULL	pfam_RasGRF_CDC25,pfam_cNMP-bd_dom,pfam_DEP_dom,pfam_Ras-like_Gua-exchang_fac_N,superfamily_Ras_GEF_dom,superfamily_cNMP-bd-like,smart_DEP_dom,smart_cNMP-bd_dom,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,pfscan_cNMP-bd_dom,pfscan_DEP_dom,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N,prints_cAMP/cGMP_kin	-	no_errors	RAPGEF3	HGNC	ENSG00000079337				17	0	0	9	5	35.7143
COL2A1	0	genome.wustl.edu	37	12	48391986	48391986	+	Splice_Site	SNP	T	T	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	12	48391986	48391986	T	C	SNP	COL2A1	ENST00000380518	human	ensembl	74_37	-1	known	splice_site	c.310-2	e4-2	1.000	-	-	-	no_errors	COL2A1	HGNC	ENSG00000139219				95	0	0	64	30	31.9149
OR8S1	0	genome.wustl.edu	37	12	48921860	48921860	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	12	48921860	48921860	C	T	SNP	OR8S1	ENST00000310194	human	ensembl	74_37	+1	known	missense	c.1054	p.R352C	0.029	NULL	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR8S1	HGNC	ENSG00000197376				22	0	0	14	7	33.3333
ENSG00000272822	0	genome.wustl.edu	37	12	49297570	49297570	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	12	49297570	49297570	G	A	SNP	ENSG00000272822	ENST00000398092	human	ensembl	74_37	-1	putative	missense	c.506	p.S169L	0.991	smart_Small_GTPase_ARF,smart_Small_GTPase_SAR1	pfam_Small_GTPase_ARF/SAR,pfam_SRP_receptor_beta_su,pfam_Small_GTPase,pfam_Gtr1_RagA,pfam_MIRO-like,pfam_Gprotein_alpha_su,superfamily_P-loop_NTPase,smart_Small_GTPase_ARF,smart_Small_GTPase_SAR1,prints_Small_GTPase_ARF/SAR,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RP11-302B13.5	Clone_based_vega_gene	ENSG00000272822				157	0	0	106	49	31.6129
NCKAP5L	0	genome.wustl.edu	37	12	50188924	50188924	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	12	50188924	50188924	C	T	SNP	NCKAP5L	ENST00000335999	human	ensembl	74_37	-1	known	missense	c.2719	p.A907T	0.000	NULL	NULL	-	no_errors	NCKAP5L	HGNC	ENSG00000167566				53	0	0	36	8	18.1818
NCKAP5L	0	genome.wustl.edu	37	12	50190190	50190190	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	12	50190190	50190190	G	A	SNP	NCKAP5L	ENST00000335999	human	ensembl	74_37	-1	known	nonsense	c.1453	p.R485*	0.060	NULL	NULL	-	no_errors	NCKAP5L	HGNC	ENSG00000167566				9	0	0	10	3	23.0769
TFCP2	0	genome.wustl.edu	37	12	51492670	51492670	+	Silent	SNP	T	T	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	12	51492670	51492670	T	C	SNP	TFCP2	ENST00000257915	human	ensembl	74_37	-1	known	silent	c.1308	p.T436	0.978	NULL	pfam_CP2,superfamily_SAM/pointed	-	no_errors	TFCP2	HGNC	ENSG00000135457				73	0	0	54	12	18.1818
KRT85	0	genome.wustl.edu	37	12	52758133	52758133	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	12	52758133	52758133	G	A	SNP	KRT85	ENST00000257901	human	ensembl	74_37	-1	known	missense	c.647	p.A216V	1.000	pfam_IF,prints_Keratin_II	pfam_IF,superfamily_Prefoldin,prints_Keratin_II	-	no_errors	KRT85	HGNC	ENSG00000135443				94	0	0	77	22	22.2222
KRT72	0	genome.wustl.edu	37	12	52981585	52981585	+	Silent	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	12	52981585	52981585	G	A	SNP	KRT72	ENST00000293745	human	ensembl	74_37	-1	known	silent	c.1140	p.C380	0.004	pfam_IF,prints_Keratin_II	pfam_IF,superfamily_Prefoldin,prints_Keratin_II	-	no_errors	KRT72	HGNC	ENSG00000170486				63	0	0	59	17	22.3684
KRT2	0	genome.wustl.edu	37	12	53045454	53045454	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	12	53045454	53045454	C	T	SNP	KRT2	ENST00000309680	human	ensembl	74_37	-1	known	missense	c.473	p.S158N	1.000	NULL	pfam_IF,superfamily_Prefoldin,prints_Keratin_II	-	no_errors	KRT2	HGNC	ENSG00000172867				123	1	0.806452	111	30	21.2766
CSAD	0	genome.wustl.edu	37	12	53554090	53554090	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	12	53554090	53554090	C	T	SNP	CSAD	ENST00000267085	human	ensembl	74_37	-1	known	missense	c.1061	p.R354H	0.820	pfam_PyrdxlP-dep_de-COase,superfamily_PyrdxlP-dep_Trfase	pfam_PyrdxlP-dep_de-COase,pfam_Aminotrans_V/Cys_dSase,pfam_ArAA_b-elim_lyase/Thr_aldolase,superfamily_PyrdxlP-dep_Trfase	-	no_errors	CSAD	HGNC	ENSG00000139631				83	0	0	52	15	22.3881
CSAD	0	genome.wustl.edu	37	12	53564257	53564257	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	12	53564257	53564257	C	T	SNP	CSAD	ENST00000475890	human	ensembl	74_37	-1	known	missense	c.650	p.R217H	0.993	NULL	pfam_PyrdxlP-dep_de-COase,superfamily_PyrdxlP-dep_Trfase	-	no_errors	CSAD	HGNC	ENSG00000139631				98	0	0	69	14	16.8675
AMHR2	0	genome.wustl.edu	37	12	53825046	53825046	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	12	53825046	53825046	G	A	SNP	AMHR2	ENST00000257863	human	ensembl	74_37	+1	known	missense	c.1511	p.R504H	1.000	pirsf_Anti-muellerian_hrmn_rcpt_II,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pirsf_Anti-muellerian_hrmn_rcpt_II,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Activin_rcpt,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	AMHR2	HGNC	ENSG00000135409				149	0	0	98	45	31.4685
WIBG	0	genome.wustl.edu	37	12	56295983	56295983	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	12	56295983	56295983	C	G	SNP	WIBG	ENST00000408946	human	ensembl	74_37	-1	known	missense	c.288	p.K96N	1.000	NULL	pfam_EJC_Pym,superfamily_EJC_Pym	-	no_errors	WIBG	HGNC	ENSG00000170473				123	0	0	82	27	24.7706
ERBB3	0	genome.wustl.edu	37	12	56478854	56478854	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	12	56478854	56478854	G	A	SNP	ERBB3	ENST00000267101	human	ensembl	74_37	+1	known	missense	c.310	p.V104M	0.994	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_EGF_rcpt_L	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Furin-like_Cys-rich_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt_N_dom,smart_Furin_repeat,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	ERBB3	HGNC	ENSG00000065361				203	0	0	145	59	28.9216
ERBB3	0	genome.wustl.edu	37	12	56482369	56482369	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	12	56482369	56482369	C	A	SNP	ERBB3	ENST00000267101	human	ensembl	74_37	+1	known	missense	c.917	p.P306H	1.000	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Furin-like_Cys-rich_dom,superfamily_Growth_fac_rcpt_N_dom	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Furin-like_Cys-rich_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt_N_dom,smart_Furin_repeat,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	ERBB3	HGNC	ENSG00000065361				367	1	0.271739	275	102	27.0557
SMARCC2	0	genome.wustl.edu	37	12	56559290	56559290	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	12	56559290	56559290	T	C	SNP	SMARCC2	ENST00000267064	human	ensembl	74_37	-1	known	missense	c.2951	p.H984R	0.958	NULL	pfam_SWIRM,pfam_SANT/Myb,superfamily_Homeodomain-like,superfamily_BRCT_dom,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_SANT/Myb,pfscan_SWIRM,pfscan_Myb-like_dom	-	no_errors	SMARCC2	HGNC	ENSG00000139613				29	0	0	22	9	29.0323
STAT2	0	genome.wustl.edu	37	12	56749288	56749288	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	12	56749288	56749288	G	T	SNP	STAT2	ENST00000314128	human	ensembl	74_37	-1	known	missense	c.410	p.P137H	0.018	NULL	pfam_STAT_TF_DNA-bd,pfam_STAT_TF_alpha,pfam_STAT_TF_prot_interaction,pfam_STAT2_C,pfam_SH2,superfamily_p53-like_TF_DNA-bd,superfamily_STAT_TF_coiled-coil,superfamily_STAT_TF_prot_interaction,smart_STAT_TF_prot_interaction,smart_SH2,pfscan_SH2	-	no_errors	STAT2	HGNC	ENSG00000170581				442	1	0.225734	370	111	23.0769
NACA	0	genome.wustl.edu	37	12	57108058	57108058	+	RNA	SNP	A	A	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	12	57108058	57108058	A	G	SNP	NACA	ENST00000551793	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.004	-	-	-	no_errors	NACA	HGNC	ENSG00000196531				31	0	0	26	8	23.5294
GPR182	0	genome.wustl.edu	37	12	57389924	57389924	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	12	57389924	57389924	C	G	SNP	GPR182	ENST00000300098	human	ensembl	74_37	+1	known	missense	c.931	p.L311V	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_G10D_rcpt,prints_GPCR_Rhodpsn,prints_ATII_rcpt	-	no_errors	GPR182	HGNC	ENSG00000166856				351	0	0	309	43	12.2159
LRP1	0	genome.wustl.edu	37	12	57548011	57548011	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	12	57548011	57548011	G	A	SNP	LRP1	ENST00000243077	human	ensembl	74_37	+1	known	missense	c.862	p.D288N	1.000	smart_LDLR_classB_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP1	HGNC	ENSG00000123384				226	0	0	178	61	25.523
R3HDM2	0	genome.wustl.edu	37	12	57674225	57674225	+	Silent	SNP	T	T	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	12	57674225	57674225	T	C	SNP	R3HDM2	ENST00000347140	human	ensembl	74_37	-1	known	silent	c.1218	p.Q406	0.998	NULL	pfam_R3H_ss-bd,smart_R3H_ss-bd,pfscan_R3H_ss-bd	-	no_errors	R3HDM2	HGNC	ENSG00000179912				122	0	0	85	5	5.55556
GLI1	0	genome.wustl.edu	37	12	57864151	57864151	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	12	57864151	57864151	G	A	SNP	GLI1	ENST00000228682	human	ensembl	74_37	+1	known	missense	c.1628	p.S543N	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	GLI1	HGNC	ENSG00000111087				156	0	0	92	34	26.9841
MBD6	0	genome.wustl.edu	37	12	57920920	57920920	+	Silent	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	12	57920920	57920920	C	T	SNP	MBD6	ENST00000355673	human	ensembl	74_37	+1	known	silent	c.1992	p.F664	0.992	NULL	superfamily_DNA-bd_dom,smart_Methyl_CpG_DNA-bd,pfscan_Methyl_CpG_DNA-bd	-	no_errors	MBD6	HGNC	ENSG00000166987				40	0	0	27	11	28.9474
TBK1	0	genome.wustl.edu	37	12	64878159	64878159	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	12	64878159	64878159	C	T	SNP	TBK1	ENST00000331710	human	ensembl	74_37	+1	known	nonsense	c.1069	p.R357*	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	TBK1	HGNC	ENSG00000183735				59	0	0	27	39	59.0909
RASSF3	0	genome.wustl.edu	37	12	65088630	65088630	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	12	65088630	65088630	C	T	SNP	RASSF3	ENST00000336061	human	ensembl	74_37	+1	known	missense	c.655	p.R219C	0.993	pfscan_SARAH_dom	pfam_Ras-assoc,smart_Ras-assoc,pfscan_Ras-assoc,pfscan_SARAH_dom	-	no_errors	RASSF3	HGNC	ENSG00000153179				127	0	0	83	41	33.0645
TMBIM4	0	genome.wustl.edu	37	12	66531769	66531769	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	12	66531769	66531769	G	A	SNP	TMBIM4	ENST00000358230	human	ensembl	74_37	-1	known	missense	c.688	p.R230W	0.074	pfam_Bax_inhibitor_1-related	pfam_Bax_inhibitor_1-related	-	no_errors	TMBIM4	HGNC	ENSG00000155957				138	0	0	137	30	17.9641
GRIP1	0	genome.wustl.edu	37	12	66909462	66909462	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	12	66909462	66909462	T	C	SNP	GRIP1	ENST00000359742	human	ensembl	74_37	-1	known	missense	c.661	p.S221G	1.000	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	GRIP1	HGNC	ENSG00000155974				197	0	0	155	48	23.6453
ING4	0	genome.wustl.edu	37	12	6760339	6760339	+	RNA	SNP	T	T	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	12	6760339	6760339	T	G	SNP	ING4	ENST00000486287	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.260	-	-	-	no_errors	ING4	HGNC	ENSG00000111653				62	0	0	42	17	28.8136
RAP1B	0	genome.wustl.edu	37	12	69042539	69042539	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	12	69042539	69042539	G	A	SNP	RAP1B	ENST00000250559	human	ensembl	74_37	+1	known	missense	c.35	p.G12E	1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAP1B	HGNC	ENSG00000127314				44	0	0	60	6	9.09091
CDCA3	0	genome.wustl.edu	37	12	6954973	6954973	+	RNA	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	12	6954973	6954973	G	A	SNP	CDCA3	ENST00000603043	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.003	-	-	-	no_errors	CDCA3	HGNC	ENSG00000111665				160	0	0	129	38	22.7545
YEATS4	0	genome.wustl.edu	37	12	69756672	69756672	+	Silent	SNP	A	A	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	12	69756672	69756672	A	G	SNP	YEATS4	ENST00000247843	human	ensembl	74_37	+1	known	silent	c.156	p.K52	0.893	pfam_YEATS,pfscan_YEATS	pfam_YEATS,pfscan_YEATS	-	no_errors	YEATS4	HGNC	ENSG00000127337				208	1	0.478469	214	12	5.30973
FRS2	0	genome.wustl.edu	37	12	69968485	69968485	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	12	69968485	69968485	G	A	SNP	FRS2	ENST00000299293	human	ensembl	74_37	+1	known	missense	c.1277	p.R426H	1.000	NULL	pfam_Insln_rcpt_S1,smart_Insln_rcpt_S1,pfscan_Insln_rcpt_S1	-	no_errors	FRS2	HGNC	ENSG00000166225				46	0	0	39	13	25
PTPN6	0	genome.wustl.edu	37	12	7064594	7064594	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	12	7064594	7064594	C	A	SNP	PTPN6	ENST00000456013	human	ensembl	74_37	+1	known	missense	c.693	p.N231K	1.000	pirsf_Tyr_Pase_non-rcpt_typ-6/11	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_SH2,smart_SH2,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pirsf_Tyr_Pase_non-rcpt_typ-6/11,pfscan_SH2,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt,prints_SH2	-	no_errors	PTPN6	HGNC	ENSG00000111679				190	1	0.52356	132	45	25.4237
PTPRB	0	genome.wustl.edu	37	12	70964915	70964915	+	Silent	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	12	70964915	70964915	G	A	SNP	PTPRB	ENST00000334414	human	ensembl	74_37	-1	known	silent	c.3261	p.T1087	0.021	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Ricin_B_lectin,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRB	HGNC	ENSG00000127329				52	0	0	43	27	38.5714
C1RL	0	genome.wustl.edu	37	12	7249730	7249730	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	12	7249730	7249730	G	A	SNP	C1RL	ENST00000266542	human	ensembl	74_37	-1	known	nonsense	c.721	p.Q241*	0.001	superfamily_Trypsin-like_Pept_dom	pfam_Peptidase_S1,pfam_CUB_dom,superfamily_Trypsin-like_Pept_dom,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_CUB_dom,smart_Peptidase_S1,pfscan_CUB_dom,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	C1RL	HGNC	ENSG00000139178				58	0	0	27	18	40
TRHDE	0	genome.wustl.edu	37	12	73046163	73046163	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	12	73046163	73046163	G	A	SNP	TRHDE	ENST00000261180	human	ensembl	74_37	+1	known	missense	c.2602	p.V868I	1.000	NULL	pfam_Peptidase_M1_N,prints_Peptidase_M1_N	-	no_errors	TRHDE	HGNC	ENSG00000072657				111	0	0	80	32	28.5714
OSBPL8	0	genome.wustl.edu	37	12	76784295	76784295	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	12	76784295	76784295	A	T	SNP	OSBPL8	ENST00000261183	human	ensembl	74_37	-1	known	missense	c.1072	p.S358T	1.000	NULL	pfam_Oxysterol-bd,pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	OSBPL8	HGNC	ENSG00000091039				210	0	0	183	25	12.0192
GDF3	0	genome.wustl.edu	37	12	7848094	7848094	+	Silent	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	12	7848094	7848094	G	A	SNP	GDF3	ENST00000329913	human	ensembl	74_37	-1	known	silent	c.231	p.G77	0.748	pfam_TGF-b_N	pfam_TGF-b_C,pfam_TGF-b_N,smart_TGF-b_C,prints_Inhibin_asu	-	no_errors	GDF3	HGNC	ENSG00000184344				109	0	0	105	10	8.69565
CLEC4A	0	genome.wustl.edu	37	12	8290779	8290779	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	12	8290779	8290779	G	A	SNP	CLEC4A	ENST00000229332	human	ensembl	74_37	+1	known	missense	c.610	p.V204I	0.863	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin,prints_AntifreezeII	-	no_errors	CLEC4A	HGNC	ENSG00000111729				121	0	0	93	18	16.2162
TPP2	0	genome.wustl.edu	37	13	103282504	103282504	+	Silent	SNP	A	A	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	13	103282504	103282504	A	G	SNP	TPP2	ENST00000376065	human	ensembl	74_37	+1	known	silent	c.1203	p.K401	1.000	pfam_Peptidase_S8/S53_dom,superfamily_Peptidase_S8/S53_dom	pfam_Peptidase_S8/S53_dom,pfam_Peptidase_S8A_TPPII,superfamily_Peptidase_S8/S53_dom,prints_Peptidase_S8_subtilisin-rel	-	no_errors	TPP2	HGNC	ENSG00000134900				159	0	0	156	20	11.3636
COL4A1	0	genome.wustl.edu	37	13	110802784	110802784	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	13	110802784	110802784	T	C	SNP	COL4A1	ENST00000375820	human	ensembl	74_37	-1	known	missense	c.4936	p.T1646A	0.994	pfam_Collagen_VI_NC,superfamily_C-type_lectin_fold,smart_Collagen_VI_NC	pfam_Collagen,pfam_Collagen_VI_NC,superfamily_C-type_lectin_fold,smart_Collagen_VI_NC	-	no_errors	COL4A1	HGNC	ENSG00000187498				45	0	0	44	10	18.5185
CARKD	0	genome.wustl.edu	37	13	111286940	111286940	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	13	111286940	111286940	G	A	SNP	CARKD	ENST00000309957	human	ensembl	74_37	+1	known	missense	c.544	p.A182T	1.000	pfam_YjeF_C_carb_kinase-rel,tigrfam_YjeF_C_carb_kinase-rel	pfam_YjeF_C_carb_kinase-rel,tigrfam_YjeF_C_carb_kinase-rel	-	no_errors	CARKD	HGNC	ENSG00000213995				92	0	0	81	20	19.802
TMEM255B	0	genome.wustl.edu	37	13	114507957	114507957	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	13	114507957	114507957	C	T	SNP	TMEM255B	ENST00000375353	human	ensembl	74_37	+1	known	missense	c.769	p.P257S	0.000	NULL	NULL	-	no_errors	TMEM255B	HGNC	ENSG00000184497				82	0	0	69	18	20.6897
RASA3	0	genome.wustl.edu	37	13	114786967	114786967	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	13	114786967	114786967	G	A	SNP	RASA3	ENST00000334062	human	ensembl	74_37	-1	known	missense	c.698	p.A233V	1.000	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	pfam_RasGAP,pfam_C2_dom,pfam_Znf_Btk_motif,pfam_Pleckstrin_homology,superfamily_Rho_GTPase_activation_prot,superfamily_C2_dom,smart_C2_dom,smart_RasGAP,smart_Pleckstrin_homology,smart_Znf_Btk_motif,pfscan_C2_dom,pfscan_Pleckstrin_homology,pfscan_Znf_Btk_motif,pfscan_RasGAP,prints_Znf_Btk_motif	-	no_errors	RASA3	HGNC	ENSG00000185989				47	0	0	30	13	30.2326
ZMYM2	0	genome.wustl.edu	37	13	20638643	20638643	+	Silent	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	13	20638643	20638643	C	T	SNP	ZMYM2	ENST00000382869	human	ensembl	74_37	+1	known	silent	c.3090	p.G1030	0.990	NULL	pfam_Znf_MYM,pfam_DUF3504,smart_TRASH_dom	-	no_errors	ZMYM2	HGNC	ENSG00000121741				17	0	0	21	4	16
LATS2	0	genome.wustl.edu	37	13	21563416	21563416	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	13	21563416	21563416	G	A	SNP	LATS2	ENST00000382592	human	ensembl	74_37	-1	known	missense	c.503	p.T168M	0.010	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_UBA-like,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Prot_kinase_dom	-	no_errors	LATS2	HGNC	ENSG00000150457				102	1	0.970874	88	25	22.1239
SGCG	0	genome.wustl.edu	37	13	23853606	23853606	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	13	23853606	23853606	T	G	SNP	SGCG	ENST00000218867	human	ensembl	74_37	+1	known	missense	c.494	p.L165R	1.000	pfam_Sarcoglycan	pfam_Sarcoglycan	-	no_errors	SGCG	HGNC	ENSG00000102683				31	0	0	41	7	14.5833
SACS	0	genome.wustl.edu	37	13	23912055	23912055	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	13	23912055	23912055	G	A	SNP	SACS	ENST00000382292	human	ensembl	74_37	-1	known	missense	c.5960	p.S1987F	1.000	NULL	pfam_HEPN,pfam_Ubiquitin_dom,superfamily_HATPase_ATP-bd,superfamily_DnaJ_domain,smart_HEPN,pfscan_HEPN,pfscan_DnaJ_domain,pfscan_Ubiquitin_supergroup	-	no_errors	SACS	HGNC	ENSG00000151835				89	0	0	57	32	35.9551
NUPL1	0	genome.wustl.edu	37	13	25887102	25887102	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	13	25887102	25887102	C	T	SNP	NUPL1	ENST00000381736	human	ensembl	74_37	+1	known	missense	c.368	p.A123V	1.000	NULL	NULL	-	no_errors	NUPL1	HGNC	ENSG00000139496				97	0	0	79	5	5.95238
DCLK1	0	genome.wustl.edu	37	13	36686055	36686055	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	13	36686055	36686055	T	G	SNP	DCLK1	ENST00000360631	human	ensembl	74_37	-1	known	missense	c.674	p.K225T	1.000	pfam_Doublecortin_dom,smart_Doublecortin_dom,pfscan_Doublecortin_dom	pfam_Prot_kinase_dom,pfam_Doublecortin_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Doublecortin_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Doublecortin_dom,pfscan_Prot_kinase_dom	-	no_errors	DCLK1	HGNC	ENSG00000133083				171	0	0	180	30	14.2857
SUPT20H	0	genome.wustl.edu	37	13	37607598	37607598	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	13	37607598	37607598	C	T	SNP	SUPT20H	ENST00000350612	human	ensembl	74_37	-1	known	missense	c.695	p.R232H	1.000	NULL	pfam_Spt20	-	no_errors	SUPT20H	HGNC	ENSG00000102710				393	0	0	404	96	19.2
FREM2	0	genome.wustl.edu	37	13	39264653	39264653	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	13	39264653	39264653	A	G	SNP	FREM2	ENST00000280481	human	ensembl	74_37	+1	known	missense	c.3172	p.T1058A	1.000	NULL	pfam_Calx_beta,superfamily_Cadherin-like,smart_Calx_beta	-	no_errors	FREM2	HGNC	ENSG00000150893				162	0	0	219	35	13.7795
FREM2	0	genome.wustl.edu	37	13	39343783	39343783	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	13	39343783	39343783	C	T	SNP	FREM2	ENST00000280481	human	ensembl	74_37	+1	known	nonsense	c.5479	p.Q1827*	1.000	pfam_Calx_beta,smart_Calx_beta	pfam_Calx_beta,superfamily_Cadherin-like,smart_Calx_beta	-	no_errors	FREM2	HGNC	ENSG00000150893				50	0	0	29	27	48.2143
DGKH	0	genome.wustl.edu	37	13	42764582	42764582	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	13	42764582	42764582	G	C	SNP	DGKH	ENST00000337343	human	ensembl	74_37	+1	known	missense	c.1956	p.Q652H	0.000	NULL	pfam_Diacylglycerol_kin_accessory,pfam_Diacylglycerol_kinase_cat_dom,pfam_Pleckstrin_homology,pfam_SAM_2,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_SAM_type1,superfamily_SAM/pointed,smart_Pleckstrin_homology,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Diacylglycerol_kinase_cat_dom,smart_Diacylglycerol_kin_accessory,smart_SAM,pfscan_Pleckstrin_homology,pfscan_SAM,pfscan_Prot_Kinase_C-like_PE/DAG-bd	-	no_errors	DGKH	HGNC	ENSG00000102780				182	1	0.546448	168	45	21.1268
SIAH3	0	genome.wustl.edu	37	13	46358019	46358019	+	Silent	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	13	46358019	46358019	C	T	SNP	SIAH3	ENST00000400405	human	ensembl	74_37	-1	known	silent	c.309	p.T103	0.104	pfam_7-in-absentia-prot_TRAF-dom,superfamily_TRAF-like	pfam_7-in-absentia-prot_TRAF-dom,superfamily_TRAF-like	-	no_errors	SIAH3	HGNC	ENSG00000215475				86	0	0	39	51	56.6667
SUCLA2	0	genome.wustl.edu	37	13	48562777	48562777	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	13	48562777	48562777	T	G	SNP	SUCLA2	ENST00000378654	human	ensembl	74_37	-1	known	missense	c.433	p.T145P	1.000	pfam_ATP-grasp_succ-CoA_synth-type,tigrfam_Succ_CoA_synthase_bsu	pfam_ATP-grasp_succ-CoA_synth-type,pfam_CoA_ligase,superfamily_Succinyl-CoA_synth-like,tigrfam_Succ_CoA_synthase_bsu	-	no_errors	SUCLA2	HGNC	ENSG00000136143				118	0	0	136	17	11.1111
FNDC3A	0	genome.wustl.edu	37	13	49772224	49772224	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	13	49772224	49772224	A	C	SNP	FNDC3A	ENST00000492622	human	ensembl	74_37	+1	known	missense	c.2597	p.E866A	1.000	smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	FNDC3A	HGNC	ENSG00000102531				191	0	0	186	38	16.9643
ATP7B	0	genome.wustl.edu	37	13	52515321	52515321	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	13	52515321	52515321	C	T	SNP	ATP7B	ENST00000242839	human	ensembl	74_37	-1	known	missense	c.3452	p.R1151H	1.000	pfam_HAD-like_dom,superfamily_HAD-like_dom,tigrfam_Cation_transp_P-typ_ATPase_IB	pfam_HeavyMe-assoc_HMA,pfam_ATPase_P-typ_transduc_dom_A,pfam_HAD-like_dom,superfamily_HAD-like_dom,superfamily_HeavyMe-assoc_HMA,pfscan_HeavyMe-assoc_HMA,prints_Cation_transp_P_typ_ATPase,tigrfam_Cation_transp_P-typ_ATPase_IB,tigrfam_Cation_transp_P_typ_ATPase,tigrfam_HMA_Cu_ion-bd	-	no_errors	ATP7B	HGNC	ENSG00000123191				121	1	0.819672	70	66	48.5294
LECT1	0	genome.wustl.edu	37	13	53277901	53277901	+	Silent	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	13	53277901	53277901	G	A	SNP	LECT1	ENST00000377962	human	ensembl	74_37	-1	known	silent	c.834	p.H278	0.988	NULL	pfam_BRICHOS_dom,pfscan_BRICHOS_dom	-	no_errors	LECT1	HGNC	ENSG00000136110				134	0	0	131	41	23.8372
PCDH9	0	genome.wustl.edu	37	13	67801672	67801672	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	13	67801672	67801672	T	C	SNP	PCDH9	ENST00000377865	human	ensembl	74_37	-1	known	missense	c.901	p.R301G	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Protocadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH9	HGNC	ENSG00000184226				163	0	0	149	35	19.0217
TBC1D4	0	genome.wustl.edu	37	13	75886963	75886963	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	13	75886963	75886963	A	G	SNP	TBC1D4	ENST00000377636	human	ensembl	74_37	-1	known	missense	c.2294	p.V765A	1.000	NULL	pfam_Rab-GTPase-TBC_dom,pfam_DUF3350,pfam_PTB/PI_dom,superfamily_Rab-GTPase-TBC_dom,smart_PTB/PI_dom,smart_Rab-GTPase-TBC_dom,pfscan_PTB/PI_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D4	HGNC	ENSG00000136111				81	0	0	72	21	22.5806
EML1	0	genome.wustl.edu	37	14	100380551	100380551	+	Silent	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	14	100380551	100380551	C	T	SNP	EML1	ENST00000334192	human	ensembl	74_37	+1	known	silent	c.1587	p.A529	0.681	superfamily_Quinonprotein_ADH-like_supfam,pfscan_WD40_repeat_dom	pfam_HELP,pfam_WD40_repeat,superfamily_Quinonprotein_ADH-like_supfam,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	EML1	HGNC	ENSG00000066629				114	0	0	84	23	21.4953
MIR665	0	genome.wustl.edu	37	14	101341422	101341422	+	RNA	SNP	T	T	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	14	101341422	101341422	T	C	SNP	MIR665	ENST00000606903	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.998	-	-	-	no_errors	MIR665	HGNC	ENSG00000272291				74	0	0	47	17	26.5625
SNORD114-2	0	genome.wustl.edu	37	14	101418266	101418266	+	RNA	SNP	T	T	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	14	101418266	101418266	T	C	SNP	SNORD114-2	ENST00000363953	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.043	-	-	-	no_errors	SNORD114-2	HGNC	ENSG00000200823				81	0	0	52	18	25.7143
EXOC3L4	0	genome.wustl.edu	37	14	103571411	103571411	+	Splice_Site	SNP	T	T	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	14	103571411	103571411	T	C	SNP	EXOC3L4	ENST00000380069	human	ensembl	74_37	+1	known	splice_site	c.1466+2	e6+2	0.946	-	-	-	no_errors	EXOC3L4	HGNC	ENSG00000205436				64	0	0	35	8	18.6047
EIF5	0	genome.wustl.edu	37	14	103802238	103802238	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	14	103802238	103802238	A	G	SNP	EIF5	ENST00000216554	human	ensembl	74_37	+1	known	missense	c.41	p.Y14C	1.000	pfam_Transl_init_fac_IF2/IF5,superfamily_Transl_init_fac_IF2/IF5_N,smart_Transl_init_fac_IF2/IF5	pfam_Transl_init_fac_IF2/IF5,pfam_W2_domain,superfamily_ARM-type_fold,superfamily_Transl_init_fac_IF2/IF5_N,superfamily_Transl_init_fac_IF2/IF5_Zn-bd,smart_Transl_init_fac_IF2/IF5,smart_W2_domain	-	no_errors	EIF5	HGNC	ENSG00000100664				247	0	0	259	21	7.5
KLC1	0	genome.wustl.edu	37	14	104129110	104129110	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	14	104129110	104129110	A	G	SNP	KLC1	ENST00000334553	human	ensembl	74_37	+1	known	missense	c.643	p.T215A	1.000	pfam_Rabaptin_Rab5-bd_dom,pfscan_TPR-contain_dom,prints_Kinesin_light	pfam_Rabaptin_Rab5-bd_dom,pfam_TPR_1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom,prints_Kinesin_light	-	no_errors	KLC1	HGNC	ENSG00000126214				122	1	0.813008	90	6	6.25
AHNAK2	0	genome.wustl.edu	37	14	105406625	105406625	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	14	105406625	105406625	C	T	SNP	AHNAK2	ENST00000333244	human	ensembl	74_37	-1	known	missense	c.15163	p.G5055R	0.028	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK2	HGNC	ENSG00000185567				169	0	0	148	54	26.7327
AHNAK2	0	genome.wustl.edu	37	14	105410125	105410125	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	14	105410125	105410125	T	G	SNP	AHNAK2	ENST00000333244	human	ensembl	74_37	-1	known	missense	c.11663	p.K3888T	0.235	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK2	HGNC	ENSG00000185567				327	1	0.304878	325	19	5.52326
OR4N2	0	genome.wustl.edu	37	14	20296294	20296294	+	Silent	SNP	T	T	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	14	20296294	20296294	T	G	SNP	OR4N2	ENST00000315947	human	ensembl	74_37	+1	known	silent	c.687	p.S229	0.014	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4N2	HGNC	ENSG00000176294				215	0	0	179	22	10.9453
TEP1	0	genome.wustl.edu	37	14	20849766	20849766	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	14	20849766	20849766	G	A	SNP	TEP1	ENST00000262715	human	ensembl	74_37	-1	known	missense	c.4504	p.R1502C	0.144	NULL	pfam_TROVE,pfam_TEP1_N,pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_P-loop_NTPase,smart_WD40_repeat,pfscan_NACHT_NTPase,pfscan_TROVE,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	TEP1	HGNC	ENSG00000129566				163	0	0	131	22	14.3791
ARHGEF40	0	genome.wustl.edu	37	14	21552988	21552988	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	14	21552988	21552988	G	A	SNP	ARHGEF40	ENST00000298694	human	ensembl	74_37	+1	known	missense	c.3866	p.R1289H	1.000	smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_DH-domain,superfamily_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	ARHGEF40	HGNC	ENSG00000165801				181	0	0	149	44	22.7979
RPGRIP1	0	genome.wustl.edu	37	14	21792816	21792816	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	14	21792816	21792816	C	T	SNP	RPGRIP1	ENST00000206660	human	ensembl	74_37	+1	known	missense	c.1802	p.S601L	0.001	NULL	pfam_DUF3250,superfamily_C2_dom	-	no_errors	RPGRIP1	HGNC	ENSG00000092200				109	0	0	83	41	33.0645
SUPT16H	0	genome.wustl.edu	37	14	21830483	21830483	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	14	21830483	21830483	T	C	SNP	SUPT16H	ENST00000216297	human	ensembl	74_37	-1	known	missense	c.1666	p.N556D	1.000	pfam_FACT_Spt16p	pfam_FACT_Spt16p,pfam_Pept_M24_structural-domain,pfam_DUF1747,superfamily_Pept_M24_structural-domain	-	no_errors	SUPT16H	HGNC	ENSG00000092201				58	0	0	37	11	22.9167
CDH24	0	genome.wustl.edu	37	14	23523477	23523477	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	14	23523477	23523477	C	T	SNP	CDH24	ENST00000267383	human	ensembl	74_37	-1	known	missense	c.845	p.R282Q	0.956	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH24	HGNC	ENSG00000139880				210	0	0	145	50	25.641
MYH6	0	genome.wustl.edu	37	14	23853917	23853917	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	14	23853917	23853917	T	C	SNP	MYH6	ENST00000356287	human	ensembl	74_37	-1	known	missense	c.5299	p.M1767V	1.000	pfam_Myosin_tail	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH6	HGNC	ENSG00000197616				158	0	0	100	27	21.2598
PRKD1	0	genome.wustl.edu	37	14	30068878	30068878	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	14	30068878	30068878	T	G	SNP	PRKD1	ENST00000331968	human	ensembl	74_37	-1	known	missense	c.2051	p.K684T	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pleckstrin_homology,superfamily_Kinase-like_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_dom,prints_DAG/PE-bd	-	no_errors	PRKD1	HGNC	ENSG00000184304				187	0	0	112	37	24.8322
NPAS3	0	genome.wustl.edu	37	14	34269414	34269414	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	14	34269414	34269414	C	T	SNP	NPAS3	ENST00000356141	human	ensembl	74_37	+1	known	missense	c.1901	p.P634L	1.000	NULL	pfam_PAS_fold_3,pfam_PAS_fold,superfamily_PAS,superfamily_bHLH_dom,smart_bHLH_dom,smart_PAS,pfscan_PAS,pfscan_bHLH_dom	-	no_errors	NPAS3	HGNC	ENSG00000151322				39	0	0	31	14	31.1111
DPPA3P2	0	genome.wustl.edu	37	14	36841164	36841164	+	RNA	SNP	T	T	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	14	36841164	36841164	T	A	SNP	DPPA3P2	ENST00000557188	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.005	-	-	-	no_errors	DPPA3P2	HGNC	ENSG00000188831				40	0	0	30	7	18.9189
DPPA3P2	0	genome.wustl.edu	37	14	36841171	36841171	+	RNA	SNP	A	A	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	14	36841171	36841171	A	G	SNP	DPPA3P2	ENST00000557188	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.005	-	-	-	no_errors	DPPA3P2	HGNC	ENSG00000188831				30	0	0	28	6	17.6471
LRFN5	0	genome.wustl.edu	37	14	42356770	42356770	+	Silent	SNP	T	T	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	14	42356770	42356770	T	C	SNP	LRFN5	ENST00000298119	human	ensembl	74_37	+1	known	silent	c.942	p.P314	0.969	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Leu-rich_rpt,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Leu-rich_rpt_typical-subtyp,smart_Ig_sub,smart_Ig_sub2,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	LRFN5	HGNC	ENSG00000165379				165	0	0	156	10	6.0241
LRFN5	0	genome.wustl.edu	37	14	42357187	42357187	+	Silent	SNP	T	T	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	14	42357187	42357187	T	A	SNP	LRFN5	ENST00000298119	human	ensembl	74_37	+1	known	silent	c.1359	p.G453	1.000	superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Leu-rich_rpt,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Leu-rich_rpt_typical-subtyp,smart_Ig_sub,smart_Ig_sub2,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	LRFN5	HGNC	ENSG00000165379				52	0	0	46	4	8
FAM179B	0	genome.wustl.edu	37	14	45501482	45501482	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	14	45501482	45501482	C	T	SNP	FAM179B	ENST00000361577	human	ensembl	74_37	+1	known	missense	c.3715	p.H1239Y	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	FAM179B	HGNC	ENSG00000198718				51	0	0	52	9	14.7541
FAM179B	0	genome.wustl.edu	37	14	45542738	45542738	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	14	45542738	45542738	G	A	SNP	FAM179B	ENST00000361577	human	ensembl	74_37	+1	known	missense	c.5137	p.D1713N	0.870	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	FAM179B	HGNC	ENSG00000198718				52	0	0	32	10	23.8095
RPL10L	0	genome.wustl.edu	37	14	47120878	47120878	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	14	47120878	47120878	C	T	SNP	RPL10L	ENST00000298283	human	ensembl	74_37	-1	known	missense	c.62	p.R21H	1.000	pfam_Ribosomal_L10e/L16,superfamily_Ribosomal_L10e/L16,pirsf_Ribosomal_L10e,tigrfam_Ribosomal_L10e	pfam_Ribosomal_L10e/L16,superfamily_Ribosomal_L10e/L16,pirsf_Ribosomal_L10e,tigrfam_Ribosomal_L10e	-	no_errors	RPL10L	HGNC	ENSG00000165496				171	0	0	105	46	30.4636
PYGL	0	genome.wustl.edu	37	14	51387719	51387719	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	14	51387719	51387719	G	A	SNP	PYGL	ENST00000216392	human	ensembl	74_37	-1	known	missense	c.727	p.R243C	1.000	pfam_Glyco_trans_35,pirsf_Glyco_trans_35,tigrfam_Glycg_phsphrylas	pfam_Glyco_trans_35,pirsf_Glyco_trans_35,tigrfam_Glycg_phsphrylas	-	no_errors	PYGL	HGNC	ENSG00000100504				110	0	0	81	29	26.3636
TRIM9	0	genome.wustl.edu	37	14	51448529	51448529	+	Silent	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	14	51448529	51448529	C	T	SNP	TRIM9	ENST00000338969	human	ensembl	74_37	-1	known	silent	c.2139	p.S713	1.000	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl_sf,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY	pfam_SPRY_rcpt,pfam_Fibronectin_type3,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,superfamily_Znf_FYVE_PHD,smart_Znf_RING,smart_Znf_B-box,smart_Bbox_C,smart_Fibronectin_type3,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Fibronectin_type3,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM9	HGNC	ENSG00000100505				189	0	0	164	49	23.0047
NID2	0	genome.wustl.edu	37	14	52485867	52485867	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	14	52485867	52485867	G	T	SNP	NID2	ENST00000216286	human	ensembl	74_37	-1	known	missense	c.2940	p.F980L	1.000	pfam_Thyroglobulin_1,superfamily_Thyroglobulin_1,smart_Thyroglobulin_1,pfscan_Thyroglobulin_1	pfam_G2_nidogen/fibulin_G2F,pfam_LDLR_classB_rpt,pfam_Nidogen_extracell_dom,pfam_Thyroglobulin_1,pfam_EGF-like_Ca-bd_dom,superfamily_GFP,superfamily_Thyroglobulin_1,smart_Nidogen_extracell_dom,smart_EG-like_dom,smart_G2_nidogen/fibulin_G2F,smart_EGF-like_Ca-bd_dom,smart_Thyroglobulin_1,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDLR_classB_rpt,pfscan_G2_nidogen/fibulin_G2F,pfscan_Thyroglobulin_1	-	no_errors	NID2	HGNC	ENSG00000087303				51	0	0	30	14	31.8182
ATG14	0	genome.wustl.edu	37	14	55848812	55848812	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	14	55848812	55848812	G	A	SNP	ATG14	ENST00000247178	human	ensembl	74_37	-1	known	nonsense	c.745	p.R249*	0.867	pfam_UV_resistance/autophagy_Atg14	pfam_UV_resistance/autophagy_Atg14	-	no_errors	ATG14	HGNC	ENSG00000126775				160	0	0	144	14	8.86076
PELI2	0	genome.wustl.edu	37	14	56757153	56757153	+	Silent	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	14	56757153	56757153	G	A	SNP	PELI2	ENST00000267460	human	ensembl	74_37	+1	known	silent	c.675	p.S225	0.252	pfam_Pellino_fam	pfam_Pellino_fam	-	no_errors	PELI2	HGNC	ENSG00000139946				148	0	0	106	53	33.3333
C14orf37	0	genome.wustl.edu	37	14	58604793	58604793	+	Silent	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	14	58604793	58604793	G	A	SNP	C14orf37	ENST00000267485	human	ensembl	74_37	-1	known	silent	c.1284	p.N428	0.000	NULL	NULL	-	no_errors	C14orf37	HGNC	ENSG00000139971				120	0	0	93	42	31.1111
C14orf39	0	genome.wustl.edu	37	14	60903608	60903608	+	Silent	SNP	A	A	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	14	60903608	60903608	A	C	SNP	C14orf39	ENST00000321731	human	ensembl	74_37	-1	known	silent	c.1719	p.G573	0.987	NULL	NULL	-	no_errors	C14orf39	HGNC	ENSG00000179008				241	0	0	171	52	23.3184
C14orf39	0	genome.wustl.edu	37	14	60903657	60903657	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	14	60903657	60903657	A	T	SNP	C14orf39	ENST00000321731	human	ensembl	74_37	-1	known	missense	c.1670	p.F557Y	1.000	NULL	NULL	-	no_errors	C14orf39	HGNC	ENSG00000179008				294	0	0	191	62	24.5059
ACTN1	0	genome.wustl.edu	37	14	69392309	69392309	+	Silent	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	14	69392309	69392309	G	A	SNP	ACTN1	ENST00000394419	human	ensembl	74_37	-1	known	silent	c.186	p.G62	1.000	pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	pfam_Spectrin_repeat,pfam_CH-domain,pfam_EF-hand_Ca_insen,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_EF_hand_dom,pfscan_CH-domain,pfscan_EF_hand_dom	-	no_errors	ACTN1	HGNC	ENSG00000072110				50	0	0	40	12	23.0769
KIAA0247	0	genome.wustl.edu	37	14	70171406	70171406	+	Silent	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	14	70171406	70171406	C	T	SNP	KIAA0247	ENST00000342745	human	ensembl	74_37	+1	known	silent	c.405	p.L135	0.918	NULL	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	KIAA0247	HGNC	ENSG00000100647				78	0	0	61	12	16.4384
SMOC1	0	genome.wustl.edu	37	14	70346477	70346477	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	14	70346477	70346477	C	T	SNP	SMOC1	ENST00000361956	human	ensembl	74_37	+1	known	missense	c.82	p.R28C	1.000	NULL	pfam_Thyroglobulin_1,pfam_SPARC/Testican_Ca-bd-dom,pfam_Kazal_dom,superfamily_Thyroglobulin_1,smart_Kazal_dom,smart_Thyroglobulin_1,pfscan_Thyroglobulin_1	-	no_errors	SMOC1	HGNC	ENSG00000198732				23	0	0	10	3	23.0769
SLC8A3	0	genome.wustl.edu	37	14	70634917	70634917	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	14	70634917	70634917	C	A	SNP	SLC8A3	ENST00000381269	human	ensembl	74_37	-1	known	missense	c.223	p.A75S	1.000	tigrfam_Na_Ca_Ex	pfam_NaCa_Exmemb,pfam_Calx_beta,smart_Calx_beta,prints_Na_Ca_Ex,tigrfam_Na_Ca_Ex	-	no_errors	SLC8A3	HGNC	ENSG00000100678				60	0	0	42	11	20.7547
MAP3K9	0	genome.wustl.edu	37	14	71197172	71197172	+	Silent	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	14	71197172	71197172	G	A	SNP	MAP3K9	ENST00000555993	human	ensembl	74_37	-1	known	silent	c.3282	p.T1094	0.325	pirsf_MAPKKK9/10/11	pirsf_MAPKKK9/10/11,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_SH3_2,pfam_SH3_domain,superfamily_Kinase-like_dom,superfamily_SH3_domain,superfamily_Regulat_G_prot_signal_superfam,smart_SH3_domain,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH3_domain,pfscan_SH3_domain,pfscan_Prot_kinase_dom	-	no_errors	MAP3K9	HGNC	ENSG00000006432				86	0	0	35	22	38.5965
PCNX	0	genome.wustl.edu	37	14	71462617	71462617	+	Silent	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	14	71462617	71462617	C	T	SNP	PCNX	ENST00000304743	human	ensembl	74_37	+1	known	silent	c.2604	p.G868	1.000	NULL	pfam_Pecanex	-	no_errors	PCNX	HGNC	ENSG00000100731				83	0	0	65	22	25.2874
RGS6	0	genome.wustl.edu	37	14	72924983	72924983	+	Silent	SNP	A	A	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	14	72924983	72924983	A	G	SNP	RGS6	ENST00000553525	human	ensembl	74_37	+1	known	silent	c.240	p.E80	1.000	pfam_DEP_dom,smart_DEP_dom,pfscan_DEP_dom	pfam_RGS_dom,pfam_G-protein_gamma-like_dom,pfam_DEP_dom,superfamily_Regulat_G_prot_signal_superfam,superfamily_G-protein_gamma-like_dom,smart_DEP_dom,smart_G-protein_gamma-like_dom,smart_Regulat_G_prot_signal_superfam,pfscan_DEP_dom,pfscan_Regulat_G_prot_signal_superfam,prints_RGS_dom	-	no_errors	RGS6	HGNC	ENSG00000182732				77	0	0	52	22	29.7297
DCAF4	0	genome.wustl.edu	37	14	73406553	73406553	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	14	73406553	73406553	G	A	SNP	DCAF4	ENST00000358377	human	ensembl	74_37	+1	known	missense	c.136	p.G46S	0.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DCAF4	HGNC	ENSG00000119599				24	0	0	24	3	11.1111
HEATR4	0	genome.wustl.edu	37	14	73985802	73985802	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	14	73985802	73985802	G	A	SNP	HEATR4	ENST00000334988	human	ensembl	74_37	-1	known	missense	c.1135	p.R379W	0.018	NULL	pfam_HEAT,superfamily_ARM-type_fold	-	no_errors	HEATR4	HGNC	ENSG00000187105				116	1	0.854701	131	12	8.39161
FAM161B	0	genome.wustl.edu	37	14	74401052	74401052	+	Silent	SNP	A	A	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	14	74401052	74401052	A	G	SNP	FAM161B	ENST00000286544	human	ensembl	74_37	-1	known	silent	c.2040	p.G680	0.899	NULL	pfam_UPF0564	-	no_errors	FAM161B	HGNC	ENSG00000156050				157	1	0.632911	119	9	7.03125
AREL1	0	genome.wustl.edu	37	14	75130505	75130505	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	14	75130505	75130505	G	T	SNP	AREL1	ENST00000356357	human	ensembl	74_37	-1	known	missense	c.2390	p.P797H	1.000	pfam_HECT,superfamily_HECT,smart_HECT,pfscan_HECT	pfam_HECT,pfam_Filamin/ABP280_repeat-like,superfamily_HECT,superfamily_Ig_E-set,smart_HECT,pfscan_Filamin/ABP280_repeat-like,pfscan_HECT	-	no_errors	AREL1	HGNC	ENSG00000119682				209	1	0.47619	148	71	32.4201
RPS6KL1	0	genome.wustl.edu	37	14	75373805	75373805	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	14	75373805	75373805	C	T	SNP	RPS6KL1	ENST00000358328	human	ensembl	74_37	-1	known	missense	c.1562	p.R521Q	0.159	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_MIT,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_MIT,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	RPS6KL1	HGNC	ENSG00000198208				202	1	0.492611	154	58	27.3585
NEK9	0	genome.wustl.edu	37	14	75580066	75580066	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	14	75580066	75580066	C	T	SNP	NEK9	ENST00000238616	human	ensembl	74_37	-1	known	missense	c.914	p.R305H	0.380	pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Reg_chr_condens,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_RCC1/BLIP-II,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Reg_chr_condens,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	NEK9	HGNC	ENSG00000119638				153	1	0.649351	109	35	24.3056
KIAA1737	0	genome.wustl.edu	37	14	77576173	77576173	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	14	77576173	77576173	T	C	SNP	KIAA1737	ENST00000361786	human	ensembl	74_37	+1	known	missense	c.155	p.L52P	1.000	NULL	NULL	-	no_errors	KIAA1737	HGNC	ENSG00000198894				121	0	0	105	35	25
GSTZ1	0	genome.wustl.edu	37	14	77794336	77794336	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	14	77794336	77794336	C	T	SNP	GSTZ1	ENST00000216465	human	ensembl	74_37	+1	known	missense	c.298	p.R100C	1.000	superfamily_Glutathione-S-Trfase_C-like,tigrfam_Mal_ac_isom	pfam_Glutathione_S-Trfase_N,pfam_GST_C,superfamily_Glutathione-S-Trfase_C-like,superfamily_Thioredoxin-like_fold,tigrfam_Mal_ac_isom	-	no_errors	GSTZ1	HGNC	ENSG00000100577				40	0	0	21	8	27.5862
NRXN3	0	genome.wustl.edu	37	14	79175585	79175585	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	14	79175585	79175585	G	A	SNP	NRXN3	ENST00000554738	human	ensembl	74_37	+1	known	missense	c.1241	p.R414H	1.000	superfamily_ConA-like_lec_gl_sf,pfscan_Laminin_G	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	NRXN3	HGNC	ENSG00000021645				85	0	0	61	26	29.8851
NRXN3	0	genome.wustl.edu	37	14	80164262	80164262	+	Silent	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	14	80164262	80164262	C	T	SNP	NRXN3	ENST00000554738	human	ensembl	74_37	+1	known	silent	c.3963	p.R1321	0.999	NULL	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	NRXN3	HGNC	ENSG00000021645				89	0	0	88	17	16.1905
NRXN3	0	genome.wustl.edu	37	14	80327886	80327886	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	14	80327886	80327886	G	A	SNP	NRXN3	ENST00000557594	human	ensembl	74_37	+1	novel	missense	c.1493	p.R498H	1.000	NULL	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,smart_Neurexin-like,pfscan_Laminin_G	-	no_errors	NRXN3	HGNC	ENSG00000021645				12	0	0	10	3	23.0769
EML5	0	genome.wustl.edu	37	14	89091345	89091345	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	14	89091345	89091345	C	T	SNP	EML5	ENST00000554922	human	ensembl	74_37	-1	known	missense	c.4867	p.G1623R	1.000	superfamily_WD40_repeat_dom,smart_WD40_repeat	pfam_WD40_repeat,pfam_HELP,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	EML5	HGNC	ENSG00000165521				71	0	0	40	14	25.9259
EML5	0	genome.wustl.edu	37	14	89202717	89202717	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	14	89202717	89202717	C	T	SNP	EML5	ENST00000554922	human	ensembl	74_37	-1	known	missense	c.1040	p.R347H	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,pfam_HELP,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	EML5	HGNC	ENSG00000165521				186	0	0	142	43	23.2432
IFI27L1	0	genome.wustl.edu	37	14	94568188	94568188	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	14	94568188	94568188	G	A	SNP	IFI27L1	ENST00000553664	human	ensembl	74_37	+1	putative	missense	c.157	p.A53T	0.000	NULL	NULL	-	no_errors	IFI27L1	HGNC	ENSG00000165948				53	0	0	33	7	17.5
IFI27L2	0	genome.wustl.edu	37	14	94595893	94595893	+	Splice_Site	SNP	A	A	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	14	94595893	94595893	A	G	SNP	IFI27L2	ENST00000238609	human	ensembl	74_37	-1	known	splice_site	c.7+2	e1+2	0.028	-	-	-	no_errors	IFI27L2	HGNC	ENSG00000119632				101	1	0.980392	72	22	23.4043
PCSK6	0	genome.wustl.edu	37	15	101887963	101887963	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	15	101887963	101887963	C	T	SNP	PCSK6	ENST00000344273	human	ensembl	74_37	-1	known	missense	c.1921	p.V641M	0.000	NULL	pfam_Peptidase_S8/S53_dom,pfam_PrprotnconvertsP,superfamily_Peptidase_S8/S53_dom,superfamily_Galactose-bd-like,superfamily_Prot_inh_propept,prints_Peptidase_S8_subtilisin-rel	-	no_errors	PCSK6	HGNC	ENSG00000140479				60	0	0	56	12	17.6471
NDN	0	genome.wustl.edu	37	15	23931581	23931581	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	15	23931581	23931581	A	G	SNP	NDN	ENST00000331837	human	ensembl	74_37	-1	known	missense	c.784	p.W262R	1.000	pfam_MAGE,pfscan_MAGE	pfam_MAGE,pfscan_MAGE	-	no_errors	NDN	HGNC	ENSG00000182636				46	0	0	46	5	9.80392
SNRPN	0	genome.wustl.edu	37	15	25220628	25220628	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	15	25220628	25220628	T	C	SNP	SNRPN	ENST00000444203	human	ensembl	74_37	+1	known	missense	c.139	p.C47R	1.000	pfam_Ribonucl_LSM,superfamily_LSM_dom,smart_Ribonucl_LSM_euk/arc,pirsf_snRNP-assoc_SmB/SmN	pfam_Ribonucl_LSM,superfamily_LSM_dom,smart_Ribonucl_LSM_euk/arc,pirsf_snRNP-assoc_SmB/SmN	-	no_errors	SNRPN	HGNC	ENSG00000128739				195	0	0	140	52	27.0833
SNHG14	0	genome.wustl.edu	37	15	25427458	25427458	+	RNA	SNP	C	C	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	15	25427458	25427458	C	A	SNP	SNHG14	ENST00000424208	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SNHG14	HGNC	ENSG00000224078				112	0	0	82	21	20.3883
OCA2	0	genome.wustl.edu	37	15	28202861	28202861	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	15	28202861	28202861	C	T	SNP	OCA2	ENST00000354638	human	ensembl	74_37	-1	known	missense	c.1657	p.V553I	0.998	pfam_Cit_transptr-like_dom,tigrfam_Arsenical_pump_ArsB	pfam_Cit_transptr-like_dom,pfam_Na/sul_symport,pfam_Arsenical_pump_ArsB,tigrfam_Arsenical_pump_ArsB	-	no_errors	OCA2	HGNC	ENSG00000104044				47	0	0	30	10	25
OCA2	0	genome.wustl.edu	37	15	28211897	28211897	+	Silent	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	15	28211897	28211897	C	T	SNP	OCA2	ENST00000354638	human	ensembl	74_37	-1	known	silent	c.1575	p.P525	0.357	pfam_Cit_transptr-like_dom,pfam_Na/sul_symport,pfam_Arsenical_pump_ArsB,tigrfam_Arsenical_pump_ArsB	pfam_Cit_transptr-like_dom,pfam_Na/sul_symport,pfam_Arsenical_pump_ArsB,tigrfam_Arsenical_pump_ArsB	-	no_errors	OCA2	HGNC	ENSG00000104044				66	0	0	49	19	27.9412
FMN1	0	genome.wustl.edu	37	15	33261050	33261050	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	15	33261050	33261050	A	C	SNP	FMN1	ENST00000334528	human	ensembl	74_37	-1	known	missense	c.2183	p.L728R	0.064	NULL	pfam_FH2_Formin,smart_FH2_Formin,prints_Formin_Cappuccino_subfam	-	no_errors	FMN1	HGNC	ENSG00000248905				58	0	0	54	10	15.625
RYR3	0	genome.wustl.edu	37	15	34064222	34064222	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	15	34064222	34064222	T	G	SNP	RYR3	ENST00000389232	human	ensembl	74_37	+1	known	missense	c.8918	p.L2973R	0.996	superfamily_ARM-type_fold	pfam_Ryanodine_rcpt,pfam_Ca-rel_channel,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ConA-like_lec_gl_sf,superfamily_4_helix_cytokine-like_core,superfamily_ARM-type_fold,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_hand_dom,pfscan_MIR_motif	-	no_errors	RYR3	HGNC	ENSG00000198838				32	0	0	28	3	9.67742
PAK6	0	genome.wustl.edu	37	15	40564623	40564623	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	15	40564623	40564623	C	T	SNP	PAK6	ENST00000260404	human	ensembl	74_37	+1	known	missense	c.1057	p.R353C	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_CRIB_dom,superfamily_Kinase-like_dom,smart_CRIB_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_CRIB_dom,pfscan_Prot_kinase_dom	-	no_errors	PAK6	HGNC	ENSG00000137843				57	0	0	40	19	32.2034
PLCB2	0	genome.wustl.edu	37	15	40590804	40590804	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	15	40590804	40590804	T	A	SNP	PLCB2	ENST00000260402	human	ensembl	74_37	-1	known	missense	c.956	p.N319I	1.000	pirsf_PLC-beta,pfam_PLipase_C_PInositol-sp_X_dom,superfamily_PLC-like_Pdiesterase_TIM-brl,smart_PLipase_C_PInositol-sp_X_dom,prints_Pinositol_PLipase_C,pfscan_PLipase_C_PInositol-sp_X_dom	pirsf_PLC-beta,pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLC-beta_C,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,pfam_C2_dom,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_dom,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_dom,prints_Pinositol_PLipase_C,pfscan_C2_dom,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y	-	no_errors	PLCB2	HGNC	ENSG00000137841				79	0	0	67	6	8.21918
SPTBN5	0	genome.wustl.edu	37	15	42148707	42148707	+	Silent	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	15	42148707	42148707	G	A	SNP	SPTBN5	ENST00000320955	human	ensembl	74_37	-1	known	silent	c.8898	p.A2966	0.001	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Pleckstrin_homology,pfscan_CH-domain,pfscan_Pleckstrin_homology	-	no_errors	SPTBN5	HGNC	ENSG00000137877				15	0	0	10	3	23.0769
ZNF106	0	genome.wustl.edu	37	15	42734562	42734562	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	15	42734562	42734562	G	A	SNP	ZNF106	ENST00000263805	human	ensembl	74_37	-1	known	nonsense	c.3403	p.R1135*	0.008	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_Znf_C2H2-like,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	ZNF106	HGNC	ENSG00000103994				138	0	0	114	31	21.3793
LCMT2	0	genome.wustl.edu	37	15	43622543	43622543	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	15	43622543	43622543	C	T	SNP	LCMT2	ENST00000305641	human	ensembl	74_37	-1	known	missense	c.145	p.A49T	0.567	pfam_LCM_MeTrfase	pfam_LCM_MeTrfase	-	no_errors	LCMT2	HGNC	ENSG00000168806				110	0	0	67	25	27.1739
ELL3	0	genome.wustl.edu	37	15	44065384	44065384	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	15	44065384	44065384	T	C	SNP	ELL3	ENST00000319359	human	ensembl	74_37	-1	known	missense	c.1124	p.Y375C	1.000	pfam_Occludin_RNApol2_elong_fac_ELL	pfam_RNA_pol_II_elong_fac_ELL,pfam_Occludin_RNApol2_elong_fac_ELL	-	no_errors	ELL3	HGNC	ENSG00000128886				248	0	0	210	14	6.25
SPG11	0	genome.wustl.edu	37	15	44944003	44944003	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	15	44944003	44944003	A	G	SNP	SPG11	ENST00000261866	human	ensembl	74_37	-1	known	missense	c.1142	p.V381A	0.000	NULL	NULL	-	no_errors	SPG11	HGNC	ENSG00000104133				162	0	0	113	36	24.1611
SLC12A1	0	genome.wustl.edu	37	15	48543969	48543969	+	Splice_Site	SNP	T	T	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	15	48543969	48543969	T	G	SNP	SLC12A1	ENST00000380993	human	ensembl	74_37	+1	known	splice_site	c.1942+2	e14+2	1.000	-	-	-	no_errors	SLC12A1	HGNC	ENSG00000074803				56	0	0	38	12	24
FBN1	0	genome.wustl.edu	37	15	48936816	48936816	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	15	48936816	48936816	C	T	SNP	FBN1	ENST00000316623	human	ensembl	74_37	-1	known	missense	c.151	p.D51N	1.000	pirsf_FBN	pfam_EGF-like_Ca-bd_dom,pfam_EG-like_dom,pfam_TB_dom,superfamily_TB_dom,superfamily_Growth_fac_rcpt_N_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pirsf_FBN,pfscan_EG-like_dom	-	no_errors	FBN1	HGNC	ENSG00000166147				498	0	0	361	121	25.1037
FAM214A	0	genome.wustl.edu	37	15	52901974	52901974	+	Silent	SNP	T	T	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	15	52901974	52901974	T	C	SNP	FAM214A	ENST00000261844	human	ensembl	74_37	-1	known	silent	c.1137	p.Q379	1.000	NULL	NULL	-	no_errors	FAM214A	HGNC	ENSG00000047346				76	0	0	63	19	23.1707
CCPG1	0	genome.wustl.edu	37	15	55657475	55657475	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	15	55657475	55657475	C	G	SNP	CCPG1	ENST00000310958	human	ensembl	74_37	-1	known	missense	c.739	p.V247L	0.996	NULL	NULL	-	no_errors	CCPG1	HGNC	ENSG00000260916				159	0	0	111	17	13.2812
RFX7	0	genome.wustl.edu	37	15	56393577	56393577	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	15	56393577	56393577	A	G	SNP	RFX7	ENST00000423270	human	ensembl	74_37	-1	known	missense	c.791	p.V264A	1.000	NULL	pfam_DNA-bd_RFX	-	no_errors	RFX7	HGNC	ENSG00000181827				11	0	0	5	4	44.4444
ANXA2	0	genome.wustl.edu	37	15	60641385	60641385	+	Silent	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	15	60641385	60641385	C	T	SNP	ANXA2	ENST00000332680	human	ensembl	74_37	-1	known	silent	c.903	p.T301	0.180	pfam_Annexin_repeat,smart_Annexin_repeat,prints_Annexin	pfam_Annexin_repeat,smart_Annexin_repeat,prints_Annexin,prints_AnnexinII,prints_AnnexinV	-	no_errors	ANXA2	HGNC	ENSG00000182718				52	0	0	25	21	45.6522
RORA	0	genome.wustl.edu	37	15	60907207	60907207	+	Silent	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	15	60907207	60907207	G	A	SNP	RORA	ENST00000309157	human	ensembl	74_37	-1	known	silent	c.157	p.L53	0.001	NULL	pfam_Znf_hrmn_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_ROR_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,prints_ThyrH_rcpt	-	no_errors	RORA	HGNC	ENSG00000069667				57	0	0	49	12	19.6721
VPS13C	0	genome.wustl.edu	37	15	62238081	62238081	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	15	62238081	62238081	C	T	SNP	VPS13C	ENST00000261517	human	ensembl	74_37	-1	known	missense	c.4981	p.A1661T	1.000	NULL	pfam_VPSAP_dom,pfam_Autophagy-rel_C	-	no_errors	VPS13C	HGNC	ENSG00000129003				229	0	0	195	14	6.69856
ZNF609	0	genome.wustl.edu	37	15	64970450	64970450	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	15	64970450	64970450	A	G	SNP	ZNF609	ENST00000326648	human	ensembl	74_37	+1	known	missense	c.3538	p.K1180E	1.000	NULL	pfscan_Znf_C2H2	-	no_errors	ZNF609	HGNC	ENSG00000180357				83	0	0	82	19	18.8119
AAGAB	0	genome.wustl.edu	37	15	67528769	67528769	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	15	67528769	67528769	A	G	SNP	AAGAB	ENST00000261880	human	ensembl	74_37	-1	known	missense	c.338	p.V113A	1.000	superfamily_P-loop_NTPase	pfam_Alpha/Gamma-adaptin-bd_p34,superfamily_P-loop_NTPase	-	no_errors	AAGAB	HGNC	ENSG00000103591				81	0	0	80	17	17.5258
PAQR5	0	genome.wustl.edu	37	15	69682068	69682068	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	15	69682068	69682068	C	T	SNP	PAQR5	ENST00000340965	human	ensembl	74_37	+1	known	missense	c.461	p.A154V	0.209	pfam_HlyIII-related	pfam_HlyIII-related	-	no_errors	PAQR5	HGNC	ENSG00000137819				90	0	0	74	4	5.12821
KIF23	0	genome.wustl.edu	37	15	69728066	69728066	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	15	69728066	69728066	A	G	SNP	KIF23	ENST00000260363	human	ensembl	74_37	+1	known	missense	c.1228	p.I410V	1.000	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF23	HGNC	ENSG00000137807				154	1	0.645161	114	36	24
PARP6	0	genome.wustl.edu	37	15	72541618	72541618	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	15	72541618	72541618	C	T	SNP	PARP6	ENST00000287196	human	ensembl	74_37	-1	known	missense	c.1529	p.S510N	1.000	pfam_Poly(ADP-ribose)pol_cat_dom,pfscan_Poly(ADP-ribose)pol_cat_dom	pfam_Poly(ADP-ribose)pol_cat_dom,pfscan_Poly(ADP-ribose)pol_cat_dom	-	no_errors	PARP6	HGNC	ENSG00000137817				77	0	0	74	4	5.12821
FBXO22	0	genome.wustl.edu	37	15	76222249	76222249	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	15	76222249	76222249	G	A	SNP	FBXO22	ENST00000308275	human	ensembl	74_37	+1	known	missense	c.653	p.R218H	0.257	NULL	pfam_FIST_C_domain,pfam_F-box_dom,superfamily_F-box_dom	-	no_errors	FBXO22	HGNC	ENSG00000167196				200	0	0	192	69	26.4368
LOC101929439	0	genome.wustl.edu	37	15	76468034	76468034	+	RNA	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	15	76468034	76468034	C	T	SNP	LOC101929439	ENST00000558424	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	RP11-593F23.1	Clone_based_vega_gene	ENSG00000259422				33	0	0	18	9	33.3333
MEX3B	0	genome.wustl.edu	37	15	82336434	82336434	+	Silent	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	15	82336434	82336434	G	A	SNP	MEX3B	ENST00000329713	human	ensembl	74_37	-1	known	silent	c.777	p.S259	1.000	NULL	pfam_KH_dom_type_1,smart_KH_dom,smart_Znf_RING,pfscan_Znf_RING,pfscan_KH_dom_type_1	-	no_errors	MEX3B	HGNC	ENSG00000183496				61	0	0	37	18	32.7273
ALPK3	0	genome.wustl.edu	37	15	85360124	85360124	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	15	85360124	85360124	C	T	SNP	ALPK3	ENST00000258888	human	ensembl	74_37	+1	known	missense	c.47	p.A16V	0.000	NULL	pfam_MHCK_EF2_kinase,pfam_Ig_I-set,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_MHCK_EF2_kinase,pfscan_MHCK_EF2_kinase,pfscan_Ig-like_dom	-	no_errors	ALPK3	HGNC	ENSG00000136383				39	0	0	26	9	25.7143
ISG20	0	genome.wustl.edu	37	15	89195456	89195456	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	15	89195456	89195456	T	G	SNP	ISG20	ENST00000306072	human	ensembl	74_37	+1	known	missense	c.344	p.L115R	0.044	pfam_Exonuclease_RNaseT/DNA_pol3,superfamily_RNaseH-like_dom,smart_Exonuclease	pfam_Exonuclease_RNaseT/DNA_pol3,superfamily_RNaseH-like_dom,smart_Exonuclease	-	no_errors	ISG20	HGNC	ENSG00000172183				102	0	0	73	29	28.4314
RHCG	0	genome.wustl.edu	37	15	90023542	90023542	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	15	90023542	90023542	C	A	SNP	RHCG	ENST00000268122	human	ensembl	74_37	-1	known	missense	c.620	p.S207I	1.000	pfam_NH4_transpt_AmtB-like_dom,superfamily_NH4_transpt_AmtB-like_dom	pfam_NH4_transpt_AmtB-like_dom,superfamily_NH4_transpt_AmtB-like_dom,prints_RhesusRHD	-	no_errors	RHCG	HGNC	ENSG00000140519				219	0	0	142	49	25.6545
C15orf38-AP3S2	0	genome.wustl.edu	37	15	90454008	90454008	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	15	90454008	90454008	G	A	SNP	C15orf38-AP3S2	ENST00000398333	human	ensembl	74_37	-1	known	missense	c.136	p.R46W	0.977	pfam_UPF0552	pfam_UPF0552,pfam_AP_mu_sigma_su,superfamily_Longin-like_dom	-	no_errors	C15orf38-AP3S2	HGNC	ENSG00000250021				69	0	0	50	16	24.2424
ZNF710	0	genome.wustl.edu	37	15	90610620	90610620	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	15	90610620	90610620	T	C	SNP	ZNF710	ENST00000268154	human	ensembl	74_37	+1	known	missense	c.251	p.V84A	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF710	HGNC	ENSG00000140548				16	0	0	8	4	33.3333
GABARAPL3	0	genome.wustl.edu	37	15	90892352	90892352	+	Silent	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	15	90892352	90892352	C	T	SNP	GABARAPL3	ENST00000412799	human	ensembl	74_37	-1	known	silent	c.78	p.P26	1.000	pfam_Atg8_fam	pfam_Atg8_fam,pfam_Atg12	-	no_errors	GABARAPL3	HGNC	ENSG00000238244				24	0	0	23	12	34.2857
PRC1	0	genome.wustl.edu	37	15	91524789	91524789	+	Silent	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	15	91524789	91524789	G	A	SNP	PRC1	ENST00000394249	human	ensembl	74_37	-1	known	silent	c.612	p.D204	1.000	pfam_MAP65_Ase1_PRC1	pfam_MAP65_Ase1_PRC1	-	no_errors	PRC1	HGNC	ENSG00000198901				137	0	0	69	40	36.6972
PGPEP1L	0	genome.wustl.edu	37	15	99514341	99514341	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	15	99514341	99514341	C	T	SNP	PGPEP1L	ENST00000378919	human	ensembl	74_37	-1	known	missense	c.68	p.R23Q	0.103	pfam_Peptidase_C15,superfamily_Peptidase_C15-like	pfam_Peptidase_C15,superfamily_Peptidase_C15-like	-	no_errors	PGPEP1L	HGNC	ENSG00000183571				47	0	0	30	18	37.5
CLEC16A	0	genome.wustl.edu	37	16	11219992	11219992	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	16	11219992	11219992	A	G	SNP	CLEC16A	ENST00000409790	human	ensembl	74_37	+1	known	missense	c.2630	p.D877G	1.000	NULL	pfam_Uncharacterised_FPL	-	no_errors	CLEC16A	HGNC	ENSG00000038532				77	0	0	50	16	24.2424
CACNA1H	0	genome.wustl.edu	37	16	1257104	1257104	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	16	1257104	1257104	G	A	SNP	CACNA1H	ENST00000348261	human	ensembl	74_37	+1	known	missense	c.2893	p.V965I	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_PKD1_2_channel,prints_VDCC_T_a1su,prints_PKD_2	-	no_errors	CACNA1H	HGNC	ENSG00000196557				8	0	0	12	3	20
NPRL3	0	genome.wustl.edu	37	16	138812	138812	+	Silent	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	16	138812	138812	C	T	SNP	NPRL3	ENST00000399953	human	ensembl	74_37	-1	known	silent	c.1428	p.S476	0.001	NULL	pfam_NPR3,superfamily_Galactose-bd-like	-	no_errors	NPRL3	HGNC	ENSG00000103148				25	0	0	22	4	15.3846
PARN	0	genome.wustl.edu	37	16	14540793	14540793	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	16	14540793	14540793	T	C	SNP	PARN	ENST00000437198	human	ensembl	74_37	-1	known	missense	c.1816	p.K606E	1.000	NULL	pfam_RNase_CAF1,pfam_PolyA-riboNase_RNA_binding,pfam_R3H_ss-bd,superfamily_RNaseH-like_dom,pfscan_R3H_ss-bd	-	no_errors	PARN	HGNC	ENSG00000140694				150	0	0	83	36	30.2521
NOMO1	0	genome.wustl.edu	37	16	14975460	14975460	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	16	14975460	14975460	C	T	SNP	NOMO1	ENST00000287667	human	ensembl	74_37	+1	known	missense	c.2945	p.A982V	0.998	superfamily_Carb-bd-like_fold	pfam_DUF2012,superfamily_CarboxyPept-like_regulatory,superfamily_Carb-bd-like_fold,superfamily_Collagen-bd_Cna_B-typ_dom	-	no_errors	NOMO1	HGNC	ENSG00000103512				168	0	0	97	41	29.7101
NOMO1	0	genome.wustl.edu	37	16	14976505	14976505	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	16	14976505	14976505	C	T	SNP	NOMO1	ENST00000287667	human	ensembl	74_37	+1	known	missense	c.3082	p.R1028W	1.000	superfamily_Carb-bd-like_fold	pfam_DUF2012,superfamily_CarboxyPept-like_regulatory,superfamily_Carb-bd-like_fold,superfamily_Collagen-bd_Cna_B-typ_dom	-	no_errors	NOMO1	HGNC	ENSG00000103512				176	0	0	121	31	20.3947
XYLT1	0	genome.wustl.edu	37	16	17232375	17232375	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	16	17232375	17232375	G	A	SNP	XYLT1	ENST00000261381	human	ensembl	74_37	-1	known	missense	c.1601	p.T534M	1.000	pfam_Glyco_trans_14	pfam_XylT,pfam_Glyco_trans_14	-	no_errors	XYLT1	HGNC	ENSG00000103489				77	0	0	49	16	24.6154
C16orf62	0	genome.wustl.edu	37	16	19590355	19590355	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	16	19590355	19590355	G	A	SNP	C16orf62	ENST00000448695	human	ensembl	74_37	+1	known	missense	c.49	p.V17I	0.000	NULL	NULL	-	no_errors	C16orf62	HGNC	ENSG00000103544				32	0	0	19	8	29.6296
ACSM2A	0	genome.wustl.edu	37	16	20494494	20494494	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	16	20494494	20494494	A	G	SNP	ACSM2A	ENST00000219054	human	ensembl	74_37	+1	known	missense	c.1624	p.R542G	0.996	NULL	pfam_AMP-dep_Synth/Lig	-	no_errors	ACSM2A	HGNC	ENSG00000183747				186	0	0	109	45	29.2208
ACSM1	0	genome.wustl.edu	37	16	20648143	20648143	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	16	20648143	20648143	C	T	SNP	ACSM1	ENST00000307493	human	ensembl	74_37	-1	known	missense	c.1217	p.S406N	0.932	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig	-	no_errors	ACSM1	HGNC	ENSG00000166743				79	0	0	56	20	26.3158
LOC81691	0	genome.wustl.edu	37	16	20851786	20851786	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	16	20851786	20851786	G	A	SNP	LOC81691	ENST00000261377	human	ensembl	74_37	+1	known	missense	c.1622	p.R541H	0.121	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	pfam_Exonuclease_RNaseT/DNA_pol3,pfam_RRM_dom,superfamily_RNaseH-like_dom,smart_Exonuclease,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	AC004381.6	Clone_based_vega_gene	ENSG00000005189				151	1	0.657895	125	46	26.9006
DNAH3	0	genome.wustl.edu	37	16	21042529	21042529	+	Silent	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	16	21042529	21042529	G	A	SNP	DNAH3	ENST00000261383	human	ensembl	74_37	-1	known	silent	c.5277	p.C1759	0.961	superfamily_P-loop_NTPase	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,superfamily_Prefoldin,smart_AAA+_ATPase	-	no_errors	DNAH3	HGNC	ENSG00000158486				119	1	0.833333	76	9	10.5882
DNAH3	0	genome.wustl.edu	37	16	21049222	21049222	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	16	21049222	21049222	C	T	SNP	DNAH3	ENST00000261383	human	ensembl	74_37	-1	known	missense	c.4811	p.R1604H	1.000	superfamily_P-loop_NTPase	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,superfamily_Prefoldin,smart_AAA+_ATPase	-	no_errors	DNAH3	HGNC	ENSG00000158486				53	0	0	45	13	22.4138
TSC2	0	genome.wustl.edu	37	16	2106665	2106665	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	16	2106665	2106665	C	T	SNP	TSC2	ENST00000439117	human	ensembl	74_37	+1	known	missense	c.295	p.R99C	0.888	NULL	NULL	-	no_errors	TSC2	HGNC	ENSG00000103197				65	0	0	69	21	23.3333
DNAH3	0	genome.wustl.edu	37	16	21109952	21109952	+	Silent	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	16	21109952	21109952	C	T	SNP	DNAH3	ENST00000261383	human	ensembl	74_37	-1	known	silent	c.2505	p.A835	0.077	superfamily_P-loop_NTPase	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,superfamily_Prefoldin,smart_AAA+_ATPase	-	no_errors	DNAH3	HGNC	ENSG00000158486				232	0	0	157	60	27.6498
ZP2	0	genome.wustl.edu	37	16	21222833	21222833	+	Silent	SNP	G	G	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	16	21222833	21222833	G	T	SNP	ZP2	ENST00000219593	human	ensembl	74_37	-1	known	silent	c.36	p.P12	0.000	NULL	pfam_ZP_dom,smart_ZP_dom,pfscan_ZP_dom,prints_ZP_dom	-	no_errors	ZP2	HGNC	ENSG00000103310				241	0	0	164	51	23.7209
PKD1	0	genome.wustl.edu	37	16	2150211	2150211	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	16	2150211	2150211	G	A	SNP	PKD1	ENST00000262304	human	ensembl	74_37	-1	known	missense	c.9668	p.T3223M	0.941	superfamily_Lipase_LipOase,smart_PLAT/LH2_dom,pfscan_PLAT/LH2_dom	pfam_PKD_dom,pfam_PKD1_2_channel,pfam_PKD/REJ-like,pfam_PLAT/LH2_dom,pfam_C-type_lectin,pfam_WSC_carb-bd,pfam_GPS_dom,superfamily_C-type_lectin_fold,superfamily_Lipase_LipOase,superfamily_PKD_dom,superfamily_Fe_hydrogenase,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_WSC_carb-bd_subgr,smart_PKD/Chitinase_dom,smart_C-type_lectin,smart_GPS_dom,smart_PLAT/LH2_dom,prints_PKD_1,pfscan_GPS_dom,pfscan_C-type_lectin,pfscan_PKD_dom,pfscan_PLAT/LH2_dom,pfscan_REJ-like,pfscan_WSC_carb-bd,tigrfam_Polycystin_cat	-	no_errors	PKD1	HGNC	ENSG00000008710				98	0	0	76	8	9.52381
NPIPB4	0	genome.wustl.edu	37	16	21848760	21848760	+	Silent	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	16	21848760	21848760	C	T	SNP	NPIPB4	ENST00000415645	human	ensembl	74_37	-1	known	silent	c.948	p.A316	0.064	NULL	NULL	-	no_errors	NPIPB4	HGNC	ENSG00000185864				96	0	0	77	19	19.7917
TRAF7	0	genome.wustl.edu	37	16	2223954	2223954	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	16	2223954	2223954	G	A	SNP	TRAF7	ENST00000326181	human	ensembl	74_37	+1	known	missense	c.1168	p.G390R	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat	pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_TRAF-like,smart_Znf_RING,smart_WD40_repeat,pfscan_Znf_RING,pfscan_Znf_TRAF,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	TRAF7	HGNC	ENSG00000131653				138	0	0	108	44	28.9474
PGP	0	genome.wustl.edu	37	16	2263803	2263803	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	16	2263803	2263803	C	T	SNP	PGP	ENST00000333503	human	ensembl	74_37	-1	known	missense	c.892	p.V298M	0.001	superfamily_HAD-like_dom,tigrfam_PGP_euk	pfam_HAD-like_dom,superfamily_HAD-like_dom,tigrfam_PGP_euk,tigrfam_HAD-SF_hydro_IIA	-	no_errors	PGP	HGNC	ENSG00000184207				216	0	0	157	49	23.7864
ERN2	0	genome.wustl.edu	37	16	23706239	23706239	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	16	23706239	23706239	T	C	SNP	ERN2	ENST00000256797	human	ensembl	74_37	-1	known	missense	c.2054	p.D685G	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_KEN_dom,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Quinonprotein_ADH-like_supfam,smart_PQQ_beta_propeller_repeat,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_PUG-dom,pfscan_Prot_kinase_dom	-	no_errors	ERN2	HGNC	ENSG00000134398				60	0	0	33	9	21.4286
CACNG3	0	genome.wustl.edu	37	16	24372978	24372978	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	16	24372978	24372978	T	C	SNP	CACNG3	ENST00000005284	human	ensembl	74_37	+1	known	missense	c.742	p.S248P	1.000	NULL	pfam_PMP22/EMP/MP20/Claudin,prints_VDCC_gsu	-	no_errors	CACNG3	HGNC	ENSG00000006116				126	1	0.787402	108	8	6.89655
TNRC6A	0	genome.wustl.edu	37	16	24803058	24803058	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	16	24803058	24803058	G	A	SNP	TNRC6A	ENST00000395799	human	ensembl	74_37	+1	known	missense	c.3095	p.R1032H	1.000	NULL	pfam_Argonaute_hook_dom,superfamily_UBA-like	-	no_errors	TNRC6A	HGNC	ENSG00000090905				73	0	0	59	15	20.2703
KDM8	0	genome.wustl.edu	37	16	27232205	27232205	+	RNA	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	16	27232205	27232205	C	T	SNP	KDM8	ENST00000567785	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	KDM8	HGNC	ENSG00000155666				13	0	0	10	5	33.3333
GTF3C1	0	genome.wustl.edu	37	16	27514210	27514210	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	16	27514210	27514210	G	A	SNP	GTF3C1	ENST00000356183	human	ensembl	74_37	-1	known	missense	c.1877	p.T626I	1.000	NULL	pfam_TFIIIC_Bblock-bd	-	no_errors	GTF3C1	HGNC	ENSG00000077235				19	0	0	16	2	11.1111
GTF3C1	0	genome.wustl.edu	37	16	27523220	27523220	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	16	27523220	27523220	T	C	SNP	GTF3C1	ENST00000356183	human	ensembl	74_37	-1	known	missense	c.976	p.T326A	1.000	NULL	pfam_TFIIIC_Bblock-bd	-	no_errors	GTF3C1	HGNC	ENSG00000077235				73	0	0	79	5	5.95238
PRSS27	0	genome.wustl.edu	37	16	2763683	2763683	+	Silent	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	16	2763683	2763683	C	T	SNP	PRSS27	ENST00000302641	human	ensembl	74_37	-1	known	silent	c.525	p.P175	0.000	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1	pfam_Peptidase_S1,pfam_Peptidase_S1A_nudel,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	PRSS27	HGNC	ENSG00000172382				70	0	0	45	25	35.7143
SULT1A2	0	genome.wustl.edu	37	16	28604855	28604855	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	16	28604855	28604855	G	A	SNP	SULT1A2	ENST00000335715	human	ensembl	74_37	-1	known	missense	c.407	p.A136V	0.591	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase	-	no_errors	SULT1A2	HGNC	ENSG00000197165				77	0	0	49	21	30
ATXN2L	0	genome.wustl.edu	37	16	28845512	28845512	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	16	28845512	28845512	C	A	SNP	ATXN2L	ENST00000395547	human	ensembl	74_37	+1	known	missense	c.2152	p.H718N	1.000	NULL	pfam_LsmAD_domain,pfam_Ataxin-2_C,superfamily_LSM_dom	-	no_errors	ATXN2L	HGNC	ENSG00000168488				112	0	0	108	36	25
TAOK2	0	genome.wustl.edu	37	16	29990346	29990346	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	16	29990346	29990346	C	T	SNP	TAOK2	ENST00000308893	human	ensembl	74_37	+1	known	missense	c.404	p.A135V	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	TAOK2	HGNC	ENSG00000149930				201	0	0	138	46	25
CORO1A	0	genome.wustl.edu	37	16	30199690	30199690	+	Silent	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	16	30199690	30199690	G	A	SNP	CORO1A	ENST00000219150	human	ensembl	74_37	+1	known	silent	c.1074	p.L358	0.999	pfam_DUF1900	pfam_DUF1900,pfam_DUF1899,pfam_WD40_repeat,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	CORO1A	HGNC	ENSG00000102879				216	1	0.460829	142	59	29.3532
MYLPF	0	genome.wustl.edu	37	16	30387188	30387188	+	Silent	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	16	30387188	30387188	C	T	SNP	MYLPF	ENST00000322861	human	ensembl	74_37	+1	known	silent	c.51	p.S17	0.944	NULL	smart_EF_hand_dom,pfscan_EF_hand_dom	-	no_errors	MYLPF	HGNC	ENSG00000180209				30	0	0	23	11	32.3529
SRCAP	0	genome.wustl.edu	37	16	30734373	30734373	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	16	30734373	30734373	G	A	SNP	SRCAP	ENST00000262518	human	ensembl	74_37	+1	known	missense	c.3982	p.A1328T	1.000	NULL	pfam_SNF2_N,pfam_Helicase/SANT-assoc_DNA-bd,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_HAS_subgr,smart_Helicase_ATP-bd,smart_Helicase_C,smart_AT_hook_DNA-bd_motif,pfscan_Helicase/SANT-assoc_DNA-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,prints_AT_hook-like	-	no_errors	SRCAP	HGNC	ENSG00000080603				152	0	0	123	8	6.10687
SRCAP	0	genome.wustl.edu	37	16	30750440	30750440	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	16	30750440	30750440	C	T	SNP	SRCAP	ENST00000262518	human	ensembl	74_37	+1	known	missense	c.9079	p.R3027C	0.997	NULL	pfam_SNF2_N,pfam_Helicase/SANT-assoc_DNA-bd,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_HAS_subgr,smart_Helicase_ATP-bd,smart_Helicase_C,smart_AT_hook_DNA-bd_motif,pfscan_Helicase/SANT-assoc_DNA-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,prints_AT_hook-like	-	no_errors	SRCAP	HGNC	ENSG00000080603				79	0	0	75	29	27.8846
C16orf58	0	genome.wustl.edu	37	16	31502222	31502222	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	16	31502222	31502222	C	A	SNP	C16orf58	ENST00000327237	human	ensembl	74_37	-1	known	missense	c.1341	p.K447N	0.996	NULL	pfam_RUS2/WXR1	-	no_errors	C16orf58	HGNC	ENSG00000140688				100	0	0	64	24	27.2727
HERC2P4	0	genome.wustl.edu	37	16	32190791	32190791	+	RNA	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	16	32190791	32190791	G	A	SNP	HERC2P4	ENST00000566591	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.997	-	-	-	no_errors	HERC2P4	HGNC	ENSG00000230267				30	0	0	24	9	27.2727
MEFV	0	genome.wustl.edu	37	16	3293939	3293939	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	16	3293939	3293939	T	C	SNP	MEFV	ENST00000541159	human	ensembl	74_37	-1	putative	missense	c.1255	p.N419D	0.000	NULL	pfam_DAPIN,pfam_Znf_B-box,superfamily_DEATH-like_dom,smart_Znf_B-box,pfscan_DAPIN,pfscan_Znf_B-box	-	no_errors	MEFV	HGNC	ENSG00000103313				23	0	0	8	5	38.4615
MEFV	0	genome.wustl.edu	37	16	3299587	3299587	+	Silent	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	16	3299587	3299587	G	A	SNP	MEFV	ENST00000219596	human	ensembl	74_37	-1	known	silent	c.1104	p.S368	0.017	NULL	pfam_DAPIN,pfam_SPRY_rcpt,pfam_Znf_B-box,superfamily_ConA-like_lec_gl_sf,superfamily_DEATH-like_dom,smart_Znf_B-box,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_DAPIN,pfscan_Znf_B-box,prints_Butyrophylin	-	no_errors	MEFV	HGNC	ENSG00000103313				51	0	0	44	11	20
SLX4	0	genome.wustl.edu	37	16	3640962	3640962	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	16	3640962	3640962	C	A	SNP	SLX4	ENST00000294008	human	ensembl	74_37	-1	known	missense	c.2677	p.G893C	0.000	NULL	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like	-	no_errors	SLX4	HGNC	ENSG00000188827				111	0	0	107	7	6.14035
SRL	0	genome.wustl.edu	37	16	4247798	4247798	+	Splice_Site	SNP	A	A	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	16	4247798	4247798	A	G	SNP	SRL	ENST00000572111	human	ensembl	74_37	-1	known	splice_site	c.1461+2	e3+2	1.000	-	-	-	no_errors	SRL	HGNC	ENSG00000185739				111	0	0	82	43	34.4
TFAP4	0	genome.wustl.edu	37	16	4312555	4312555	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	16	4312555	4312555	G	A	SNP	TFAP4	ENST00000573476	human	ensembl	74_37	-1	known	missense	c.271	p.R91W	0.016	NULL	NULL	-	no_errors	TFAP4	HGNC	ENSG00000090447				176	0	0	144	46	24.2105
TFAP4	0	genome.wustl.edu	37	16	4322659	4322659	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	16	4322659	4322659	C	A	SNP	TFAP4	ENST00000204517	human	ensembl	74_37	-1	known	missense	c.89	p.S30I	1.000	NULL	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	TFAP4	HGNC	ENSG00000090447				16	0	0	23	9	28.125
ABCC11	0	genome.wustl.edu	37	16	48248902	48248902	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	16	48248902	48248902	C	T	SNP	ABCC11	ENST00000356608	human	ensembl	74_37	-1	known	missense	c.1138	p.G380R	0.083	pfam_ABC_transptr_TM_dom,superfamily_ABC1_TM_dom,pfscan_ABC1_TM_dom	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_P-loop_NTPase,superfamily_ABC1_TM_dom,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom	-	no_errors	ABCC11	HGNC	ENSG00000121270				89	0	0	52	24	31.5789
ABCC11	0	genome.wustl.edu	37	16	48249234	48249234	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	16	48249234	48249234	C	T	SNP	ABCC11	ENST00000356608	human	ensembl	74_37	-1	known	missense	c.973	p.V325M	0.000	pfam_ABC_transptr_TM_dom,superfamily_ABC1_TM_dom,pfscan_ABC1_TM_dom	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_P-loop_NTPase,superfamily_ABC1_TM_dom,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom	-	no_errors	ABCC11	HGNC	ENSG00000121270				57	0	0	42	16	27.5862
HEATR3	0	genome.wustl.edu	37	16	50102752	50102752	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	16	50102752	50102752	A	C	SNP	HEATR3	ENST00000299192	human	ensembl	74_37	+1	known	missense	c.373	p.T125P	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	HEATR3	HGNC	ENSG00000155393				337	0	0	276	88	24.1758
NKD1	0	genome.wustl.edu	37	16	50667513	50667513	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	16	50667513	50667513	G	T	SNP	NKD1	ENST00000268459	human	ensembl	74_37	+1	known	missense	c.1234	p.G412C	0.976	NULL	pfscan_EF_hand_dom	-	no_errors	NKD1	HGNC	ENSG00000140807				24	0	0	12	7	36.8421
CHD9	0	genome.wustl.edu	37	16	53190809	53190809	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	16	53190809	53190809	T	A	SNP	CHD9	ENST00000398510	human	ensembl	74_37	+1	known	missense	c.808	p.F270I	1.000	NULL	pfam_SNF2_N,pfam_BRK_domain,pfam_Chromo_domain,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,smart_BRK_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD9	HGNC	ENSG00000177200				129	0	0	119	8	6.29921
SLC6A2	0	genome.wustl.edu	37	16	55706069	55706069	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	16	55706069	55706069	C	T	SNP	SLC6A2	ENST00000219833	human	ensembl	74_37	+1	known	missense	c.626	p.P209L	1.000	pfam_Na/ntran_symport,pfscan_Na/ntran_symport	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport,prints_Na/ntran_symport_noradrenaline	-	no_errors	SLC6A2	HGNC	ENSG00000103546				68	0	0	43	11	20.3704
CX3CL1	0	genome.wustl.edu	37	16	57416565	57416565	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	16	57416565	57416565	C	T	SNP	CX3CL1	ENST00000006053	human	ensembl	74_37	+1	known	missense	c.815	p.T272M	0.533	prints_Chemokine_CX3CL1	pfam_Chemokine_IL8-like_dom,superfamily_Chemokine_IL8-like_dom,smart_Chemokine_IL8-like_dom,prints_Chemokine_CX3CL1	-	no_errors	CX3CL1	HGNC	ENSG00000006210				55	0	0	53	18	25.3521
GPR97	0	genome.wustl.edu	37	16	57702267	57702267	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	16	57702267	57702267	C	T	SNP	GPR97	ENST00000333493	human	ensembl	74_37	+1	known	missense	c.8	p.T3M	0.000	NULL	pfam_GPCR_2_secretin-like,pfam_GPS_dom,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like,prints_GPCR_2_orphan_rcpt_GPR56	-	no_errors	GPR97	HGNC	ENSG00000182885				11	0	0	6	6	50
SNORA50	0	genome.wustl.edu	37	16	58593706	58593706	+	RNA	SNP	A	A	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	16	58593706	58593706	A	G	SNP	SNORA50	ENST00000384225	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	SNORA50	HGNC	ENSG00000206952				133	0	0	93	38	29.0076
GOT2	0	genome.wustl.edu	37	16	58750636	58750636	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	16	58750636	58750636	G	A	SNP	GOT2	ENST00000245206	human	ensembl	74_37	-1	known	missense	c.784	p.R262C	1.000	pfam_Aminotransferase_I/II,superfamily_PyrdxlP-dep_Trfase	pfam_Aminotransferase_I/II,superfamily_PyrdxlP-dep_Trfase,prints_Asp_trans	-	no_errors	GOT2	HGNC	ENSG00000125166				72	0	0	66	9	12
CAPN15	0	genome.wustl.edu	37	16	597427	597427	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	16	597427	597427	C	T	SNP	CAPN15	ENST00000219611	human	ensembl	74_37	+1	known	missense	c.589	p.P197S	0.948	NULL	pfam_Peptidase_C2_calpain_cat,pfam_Znf_RanBP2,smart_Znf_RanBP2,smart_Peptidase_C2_calpain_cat,pfscan_Znf_RanBP2,pfscan_Peptidase_C2_calpain_cat,prints_Calpain_cysteine_protease	-	no_errors	CAPN15	HGNC	ENSG00000103326				9	0	0	8	5	38.4615
CDH8	0	genome.wustl.edu	37	16	61689544	61689544	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	16	61689544	61689544	C	G	SNP	CDH8	ENST00000577390	human	ensembl	74_37	-1	known	missense	c.1736	p.S579T	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH8	HGNC	ENSG00000150394				73	0	0	68	20	22.7273
CDH11	0	genome.wustl.edu	37	16	65032470	65032470	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	16	65032470	65032470	T	G	SNP	CDH11	ENST00000268603	human	ensembl	74_37	-1	known	missense	c.518	p.N173T	1.000	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH11	HGNC	ENSG00000140937				233	1	0.42735	190	19	9.09091
SLC9A5	0	genome.wustl.edu	37	16	67286608	67286608	+	Silent	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	16	67286608	67286608	G	A	SNP	SLC9A5	ENST00000299798	human	ensembl	74_37	+1	known	silent	c.351	p.L117	0.913	pfam_Cation/H_exchanger,prints_NaH_exchanger,tigrfam_NaH_exchanger	pfam_Cation/H_exchanger,prints_Na/H_exchanger_3/5,prints_NaH_exchanger,tigrfam_NaH_exchanger	-	no_errors	SLC9A5	HGNC	ENSG00000135740				113	0	0	85	33	27.9661
AGRP	0	genome.wustl.edu	37	16	67516936	67516936	+	Silent	SNP	A	A	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	16	67516936	67516936	A	G	SNP	AGRP	ENST00000290953	human	ensembl	74_37	-1	known	silent	c.208	p.L70	0.373	pfam_Agouti,smart_Agouti	pfam_Agouti,superfamily_Agouti_dom,smart_Agouti,pfscan_Agouti_dom	-	no_errors	AGRP	HGNC	ENSG00000159723				196	0	0	141	50	26.178
TSNAXIP1	0	genome.wustl.edu	37	16	67861807	67861807	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	16	67861807	67861807	G	A	SNP	TSNAXIP1	ENST00000388833	human	ensembl	74_37	+1	known	missense	c.1888	p.V630M	0.000	NULL	NULL	-	no_errors	TSNAXIP1	HGNC	ENSG00000102904				167	0	0	114	61	34.8571
NUTF2	0	genome.wustl.edu	37	16	67904812	67904812	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	16	67904812	67904812	G	A	SNP	NUTF2	ENST00000219169	human	ensembl	74_37	+1	known	missense	c.380	p.G127D	1.000	NULL	pfam_NTF2,pfscan_Nuclear_transport_factor_2_euk	-	no_errors	NUTF2	HGNC	ENSG00000102898				85	0	0	63	18	22.2222
EDC4	0	genome.wustl.edu	37	16	67916384	67916384	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	16	67916384	67916384	T	C	SNP	EDC4	ENST00000358933	human	ensembl	74_37	+1	known	missense	c.3329	p.M1110T	1.000	NULL	superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	EDC4	HGNC	ENSG00000038358				69	0	0	44	22	33.3333
LCAT	0	genome.wustl.edu	37	16	67976607	67976607	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	16	67976607	67976607	G	A	SNP	LCAT	ENST00000264005	human	ensembl	74_37	-1	known	missense	c.490	p.R164C	1.000	pfam_LACT/PDAT_acylTrfase	pfam_LACT/PDAT_acylTrfase	-	no_errors	LCAT	HGNC	ENSG00000213398				194	0	0	144	61	29.7561
WWP2	0	genome.wustl.edu	37	16	69969758	69969758	+	Silent	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	16	69969758	69969758	G	A	SNP	WWP2	ENST00000356003	human	ensembl	74_37	+1	known	silent	c.1845	p.A615	0.094	pfam_HECT,superfamily_HECT,smart_HECT,pfscan_HECT	pfam_HECT,pfam_WW_dom,superfamily_HECT,superfamily_C2_dom,superfamily_WW_dom,smart_C2_dom,smart_WW_dom,smart_HECT,pfscan_HECT,pfscan_WW_dom	-	no_errors	WWP2	HGNC	ENSG00000198373				298	0	0	254	99	28.0453
CMTR2	0	genome.wustl.edu	37	16	71317725	71317725	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	16	71317725	71317725	C	T	SNP	CMTR2	ENST00000338099	human	ensembl	74_37	-1	known	missense	c.2099	p.R700Q	0.998	NULL	pfam_rRNA_MeTrfase_FtsJ_dom	-	no_errors	CMTR2	HGNC	ENSG00000180917				96	0	0	78	5	6.0241
PHLPP2	0	genome.wustl.edu	37	16	71683763	71683763	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	16	71683763	71683763	C	T	SNP	PHLPP2	ENST00000356272	human	ensembl	74_37	-1	known	missense	c.3002	p.R1001H	1.000	pfam_PP2C-like_dom,superfamily_PP2C-like_dom,smart_PP2C-like_dom	pfam_PP2C-like_dom,pfam_Leu-rich_rpt,superfamily_PP2C-like_dom,smart_Leu-rich_rpt_typical-subtyp,smart_PP2C-like_dom	-	no_errors	PHLPP2	HGNC	ENSG00000040199				181	0	0	135	48	26.2295
PMFBP1	0	genome.wustl.edu	37	16	72173266	72173266	+	Silent	SNP	T	T	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	16	72173266	72173266	T	C	SNP	PMFBP1	ENST00000537465	human	ensembl	74_37	-1	known	silent	c.840	p.L280	0.876	NULL	NULL	-	no_errors	PMFBP1	HGNC	ENSG00000118557				41	0	0	43	3	6.52174
ZFP1	0	genome.wustl.edu	37	16	75203278	75203278	+	Silent	SNP	T	T	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	16	75203278	75203278	T	C	SNP	ZFP1	ENST00000393430	human	ensembl	74_37	+1	known	silent	c.270	p.L90	0.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZFP1	HGNC	ENSG00000184517				93	0	0	92	28	23.3333
PKD1L2	0	genome.wustl.edu	37	16	81249951	81249951	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	16	81249951	81249951	G	A	SNP	PKD1L2	ENST00000337114	human	ensembl	74_37	-1	known	missense	c.362	p.A121V	0.000	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	pfam_Lectin_gal-bd_dom,pfam_C-type_lectin,pfam_PKD/REJ-like,superfamily_C-type_lectin_fold,superfamily_Coatomer/clathrin_app_Ig-like,superfamily_PKD_dom,smart_C-type_lectin,pfscan_C-type_lectin,pfscan_Lectin_gal-bd_dom,pfscan_REJ-like	-	no_errors	PKD1L2	HGNC	ENSG00000166473				102	0	0	82	19	18.8119
MSLN	0	genome.wustl.edu	37	16	816649	816649	+	Silent	SNP	T	T	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	16	816649	816649	T	C	SNP	MSLN	ENST00000382862	human	ensembl	74_37	+1	known	silent	c.1236	p.P412	0.000	pfam_Mesothelin	pfam_Mesothelin	-	no_errors	MSLN	HGNC	ENSG00000102854				130	0	0	89	12	11.8812
MLYCD	0	genome.wustl.edu	37	16	83948956	83948956	+	Silent	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	16	83948956	83948956	C	T	SNP	MLYCD	ENST00000262430	human	ensembl	74_37	+1	known	silent	c.1344	p.C448	0.989	pfam_Malonyl_CoA_deC	pfam_Malonyl_CoA_deC	-	no_errors	MLYCD	HGNC	ENSG00000103150				99	0	0	51	24	32
ATP2C2	0	genome.wustl.edu	37	16	84494378	84494378	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	16	84494378	84494378	A	G	SNP	ATP2C2	ENST00000262429	human	ensembl	74_37	+1	known	missense	c.2452	p.S818G	1.000	pfam_ATPase_P-typ_cation-transptr_C,tigrfam_ATPase_P-typ_Ca-transp_PMR1	pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_cation-transptr_C,pfam_HAD-like_dom,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_P-typ_cyto_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Ca-transp_PMR1,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP2C2	HGNC	ENSG00000064270				169	0	0	168	19	10.1604
FOXF1	0	genome.wustl.edu	37	16	86544748	86544748	+	Silent	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	16	86544748	86544748	C	T	SNP	FOXF1	ENST00000262426	human	ensembl	74_37	+1	known	silent	c.573	p.G191	1.000	NULL	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXF1	HGNC	ENSG00000103241				25	0	0	11	6	35.2941
MTHFSD	0	genome.wustl.edu	37	16	86565850	86565850	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	16	86565850	86565850	C	T	SNP	MTHFSD	ENST00000360900	human	ensembl	74_37	-1	known	missense	c.919	p.D307N	0.485	smart_RRM_dom,pfscan_RRM_dom	pfam_FTHF_cligase,pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	MTHFSD	HGNC	ENSG00000103248				13	0	0	9	7	43.75
JPH3	0	genome.wustl.edu	37	16	87677940	87677940	+	Silent	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	16	87677940	87677940	C	T	SNP	JPH3	ENST00000284262	human	ensembl	74_37	+1	known	silent	c.459	p.A153	0.928	pirsf_Junctophilin	pirsf_Junctophilin,pfam_MORN,smart_MORN	-	no_errors	JPH3	HGNC	ENSG00000154118				136	0	0	71	29	29
KLHDC4	0	genome.wustl.edu	37	16	87743249	87743249	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	16	87743249	87743249	G	A	SNP	KLHDC4	ENST00000270583	human	ensembl	74_37	-1	known	missense	c.1069	p.R357C	0.868	NULL	pfam_Kelch_2,pfam_Kelch_1	-	no_errors	KLHDC4	HGNC	ENSG00000104731				15	0	0	9	5	35.7143
MYH8	0	genome.wustl.edu	37	17	10315783	10315783	+	Silent	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	17	10315783	10315783	C	T	SNP	MYH8	ENST00000403437	human	ensembl	74_37	-1	known	silent	c.1320	p.L440	1.000	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,superfamily_t-SNARE,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH8	HGNC	ENSG00000133020				402	0	0	266	92	25.6983
MAP2K4	0	genome.wustl.edu	37	17	11984731	11984731	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	17	11984731	11984731	C	T	SNP	MAP2K4	ENST00000415385	human	ensembl	74_37	+1	known	nonsense	c.310	p.Q104*	1.000	superfamily_Kinase-like_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	MAP2K4	HGNC	ENSG00000065559				132	0	0	88	33	27.2727
MAP2K4	0	genome.wustl.edu	37	17	12028611	12028611	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	17	12028611	12028611	C	T	SNP	MAP2K4	ENST00000415385	human	ensembl	74_37	+1	known	missense	c.847	p.P283S	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	MAP2K4	HGNC	ENSG00000065559				131	0	0	104	29	21.8045
MYOCD	0	genome.wustl.edu	37	17	12639588	12639588	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	17	12639588	12639588	G	T	SNP	MYOCD	ENST00000425538	human	ensembl	74_37	+1	known	missense	c.526	p.A176S	0.000	NULL	pfam_RPEL_repeat,pfam_SAP_dom,smart_RPEL_repeat,smart_SAP_dom,pfscan_RPEL_repeat,pfscan_SAP_dom	-	no_errors	MYOCD	HGNC	ENSG00000141052				202	0	0	151	33	17.9348
CDRT4	0	genome.wustl.edu	37	17	15341231	15341231	+	Silent	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	17	15341231	15341231	C	T	SNP	CDRT4	ENST00000312177	human	ensembl	74_37	-1	known	silent	c.315	p.S105	0.000	NULL	superfamily_RNA_pol_subH/Rpb5_C	-	no_errors	CDRT4	HGNC	ENSG00000239704				147	1	0.675676	104	33	24.0876
TVP23C	0	genome.wustl.edu	37	17	15441469	15441469	+	Splice_Site	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	17	15441469	15441469	C	T	SNP	TVP23C	ENST00000523573	human	ensembl	74_37	-1	known	splice_site	c.162-2	e5-2	0.998	-	-	-	no_errors	TVP23C	HGNC	ENSG00000175106				131	0	0	129	64	33.1606
CDRT1	0	genome.wustl.edu	37	17	15516133	15516133	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	17	15516133	15516133	G	T	SNP	CDRT1	ENST00000395906	human	ensembl	74_37	-1	known	missense	c.1004	p.S335Y	0.981	superfamily_F-box_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_F-box_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	CDRT1	HGNC	ENSG00000241322				105	0	0	101	13	11.4035
RAI1	0	genome.wustl.edu	37	17	17700590	17700590	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	17	17700590	17700590	C	T	SNP	RAI1	ENST00000353383	human	ensembl	74_37	+1	known	missense	c.4328	p.A1443V	0.961	NULL	smart_Znf_PHD	-	no_errors	RAI1	HGNC	ENSG00000108557				67	0	0	40	19	32.2034
SMCR8	0	genome.wustl.edu	37	17	18220589	18220589	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	17	18220589	18220589	C	T	SNP	SMCR8	ENST00000406438	human	ensembl	74_37	+1	known	missense	c.1486	p.P496S	0.010	NULL	pfam_Folliculin	-	no_errors	SMCR8	HGNC	ENSG00000176994				126	0	0	89	31	25.8333
SLC47A2	0	genome.wustl.edu	37	17	19618075	19618075	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	17	19618075	19618075	C	A	SNP	SLC47A2	ENST00000325411	human	ensembl	74_37	-1	known	nonsense	c.253	p.G85*	0.982	pfam_MATE	pfam_MATE,tigrfam_MATE	-	no_errors	SLC47A2	HGNC	ENSG00000180638				379	0	0	341	22	6.06061
ALDH3A1	0	genome.wustl.edu	37	17	19645383	19645383	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	17	19645383	19645383	G	A	SNP	ALDH3A1	ENST00000225740	human	ensembl	74_37	-1	known	missense	c.623	p.T208M	0.990	pfam_Aldehyde_DH_dom,pfam_Acyl-CoA_reduct_LuxC,superfamily_Ald_DH/histidinol_DH,pirsf_Aldehyde_DH_NAD(P)	pfam_Aldehyde_DH_dom,pfam_Acyl-CoA_reduct_LuxC,superfamily_Ald_DH/histidinol_DH,pirsf_Aldehyde_DH_NAD(P)	-	no_errors	ALDH3A1	HGNC	ENSG00000108602				68	0	0	56	23	29.1139
SRR	0	genome.wustl.edu	37	17	2227145	2227145	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	17	2227145	2227145	C	T	SNP	SRR	ENST00000344595	human	ensembl	74_37	+1	known	missense	c.1001	p.S334F	0.002	NULL	pfam_Trp_syn_b_sub_like_PLP_eny_SF,superfamily_Trp_syn_b_sub_like_PLP_eny_SF	-	no_errors	SRR	HGNC	ENSG00000167720				63	0	0	46	15	24.5902
NOS2	0	genome.wustl.edu	37	17	26108199	26108199	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	17	26108199	26108199	C	T	SNP	NOS2	ENST00000313735	human	ensembl	74_37	-1	known	missense	c.727	p.A243T	1.000	pfam_NO_synthase_oxygenase_dom,superfamily_NO_synthase_oxygenase_dom,pirsf_NOS_euk	pfam_NO_synthase_oxygenase_dom,pfam_FAD-binding_1,pfam_Flavodoxin/NO_synth,pfam_OxRdtase_FAD/NAD-bd,superfamily_NO_synthase_oxygenase_dom,superfamily_Riboflavin_synthase-like_b-brl,pirsf_NOS_euk,pfscan_Flavodoxin/NO_synth,prints_Flavoprot_Pyr_Nucl_cyt_Rdtase,prints_Flavdoxin	-	no_errors	NOS2	HGNC	ENSG00000007171				107	0	0	71	32	31.068
KIAA0100	0	genome.wustl.edu	37	17	26951336	26951336	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	17	26951336	26951336	A	G	SNP	KIAA0100	ENST00000528896	human	ensembl	74_37	-1	known	missense	c.4667	p.M1556T	1.000	NULL	pfam_FMP27_C,pfam_FMP27_N,pfam_FMP27_GFWDK_dom	-	no_errors	KIAA0100	HGNC	ENSG00000007202				102	0	0	72	28	28
TP53I13	0	genome.wustl.edu	37	17	27899538	27899538	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	17	27899538	27899538	C	T	SNP	TP53I13	ENST00000301057	human	ensembl	74_37	+1	known	missense	c.892	p.R298W	0.004	NULL	NULL	-	no_errors	TP53I13	HGNC	ENSG00000167543				29	0	0	21	6	22.2222
SSH2	0	genome.wustl.edu	37	17	27958011	27958011	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	17	27958011	27958011	C	T	SNP	SSH2	ENST00000269033	human	ensembl	74_37	-1	known	missense	c.4120	p.V1374M	0.000	NULL	pfam_Dual-sp_phosphatase_cat-dom,pfam_DEK_C,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Tyr/Dual-sp_Pase,pfscan_Dual-sp_phosphatase_subgr_cat	-	no_errors	SSH2	HGNC	ENSG00000141298				181	1	0.549451	117	46	28.2209
EVI2A	0	genome.wustl.edu	37	17	29645818	29645818	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	17	29645818	29645818	C	A	SNP	EVI2A	ENST00000247270	human	ensembl	74_37	-1	known	missense	c.283	p.G95C	0.000	pfam_Ectropic_vir_integratn_site_2A,pirsf_Ectropic_vir_integratn_site_2A	pfam_Ectropic_vir_integratn_site_2A,pirsf_Ectropic_vir_integratn_site_2A	-	no_errors	EVI2A	HGNC	ENSG00000126860				189	1	0.526316	123	47	27.6471
MYO1D	0	genome.wustl.edu	37	17	31075962	31075962	+	Silent	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	17	31075962	31075962	G	A	SNP	MYO1D	ENST00000318217	human	ensembl	74_37	-1	known	silent	c.1530	p.G510	0.188	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Myosin_tail_2,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO1D	HGNC	ENSG00000176658				177	0	0	124	47	27.4854
SPACA3	0	genome.wustl.edu	37	17	31322545	31322545	+	Silent	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	17	31322545	31322545	C	T	SNP	SPACA3	ENST00000269053	human	ensembl	74_37	+1	known	silent	c.153	p.A51	0.000	NULL	pfam_Glyco_hydro_22,superfamily_Lysozyme-like_dom,smart_Glyco_hydro_22,prints_Glyco_hydro_22,prints_Glyco_hydro_22_lys	-	no_errors	SPACA3	HGNC	ENSG00000141316				111	0	0	66	17	20.4819
SLFN13	0	genome.wustl.edu	37	17	33768287	33768287	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	17	33768287	33768287	C	T	SNP	SLFN13	ENST00000285013	human	ensembl	74_37	-1	known	missense	c.2021	p.R674H	0.831	pfam_DUF2075,superfamily_P-loop_NTPase	pfam_ATPase_AAA-4,pfam_DUF2075,superfamily_P-loop_NTPase	-	no_errors	SLFN13	HGNC	ENSG00000154760				188	0	0	141	42	22.9508
HNF1B	0	genome.wustl.edu	37	17	36091778	36091778	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	17	36091778	36091778	C	T	SNP	HNF1B	ENST00000225893	human	ensembl	74_37	-1	known	missense	c.853	p.G285S	1.000	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	pfam_HNF1b_C,pfam_HNF-1_N,pfam_Homeobox_dom,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,superfamily_HNF1_dimer_dom,smart_Homeobox_dom,pfscan_Homeobox_dom	-	no_errors	HNF1B	HGNC	ENSG00000108753				184	0	0	132	52	28.2609
PNMT	0	genome.wustl.edu	37	17	37826335	37826335	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	17	37826335	37826335	C	T	SNP	PNMT	ENST00000269582	human	ensembl	74_37	+1	known	missense	c.542	p.A181V	0.998	pfam_NNMT_TEMT_trans,pirsf_NNMT_TEMT_trans	pfam_NNMT_TEMT_trans,pirsf_NNMT_TEMT_trans	-	no_errors	PNMT	HGNC	ENSG00000141744				44	0	0	34	10	22.7273
GRB7	0	genome.wustl.edu	37	17	37900873	37900873	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	17	37900873	37900873	G	A	SNP	GRB7	ENST00000445327	human	ensembl	74_37	+1	known	missense	c.938	p.R313H	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_BPS-dom,pfam_SH2,pfam_Ras-assoc,pfam_Pleckstrin_homology,smart_Ras-assoc,smart_Pleckstrin_homology,smart_SH2,pfscan_Pleckstrin_homology,pfscan_Ras-assoc,pfscan_SH2,prints_SH2	-	no_errors	GRB7	HGNC	ENSG00000141738				21	0	0	24	8	25
KRT26	0	genome.wustl.edu	37	17	38928171	38928171	+	Silent	SNP	A	A	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	17	38928171	38928171	A	G	SNP	KRT26	ENST00000335552	human	ensembl	74_37	-1	known	silent	c.195	p.S65	0.013	NULL	pfam_IF,superfamily_Prefoldin,prints_Keratin_I	-	no_errors	KRT26	HGNC	ENSG00000186393				160	1	0.621118	164	9	5.20231
KRT10	0	genome.wustl.edu	37	17	38975866	38975866	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	17	38975866	38975866	C	T	SNP	KRT10	ENST00000269576	human	ensembl	74_37	-1	known	missense	c.1276	p.E426K	1.000	pfam_IF,prints_Keratin_I	pfam_IF,superfamily_Prefoldin,prints_Keratin_I	-	no_errors	KRT10	HGNC	ENSG00000186395				174	0	0	154	62	28.7037
KRTAP4-7	0	genome.wustl.edu	37	17	39240908	39240908	+	Silent	SNP	T	T	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	17	39240908	39240908	T	C	SNP	KRTAP4-7	ENST00000391417	human	ensembl	74_37	+1	known	silent	c.450	p.C150	0.002	NULL	pfam_Keratin-assoc	-	no_errors	KRTAP4-7	HGNC	ENSG00000240871				11	0	0	9	4	30.7692
KLHL10	0	genome.wustl.edu	37	17	40001941	40001941	+	Silent	SNP	C	C	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	17	40001941	40001941	C	A	SNP	KLHL10	ENST00000293303	human	ensembl	74_37	+1	known	silent	c.1248	p.I416	0.953	pfam_Kelch_1,smart_Kelch_1,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BACK,pfam_BTB_POZ,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL10	HGNC	ENSG00000161594				86	0	0	57	28	32.9412
KCNH4	0	genome.wustl.edu	37	17	40330908	40330908	+	Silent	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	17	40330908	40330908	G	A	SNP	KCNH4	ENST00000264661	human	ensembl	74_37	-1	known	silent	c.213	p.Y71	0.739	pfam_PAS_fold_3,pfam_PAS_fold,pfam_PAS_4,superfamily_PAS,pfscan_PAS,tigrfam_PAS	pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom,pfam_PAS_fold_3,pfam_PAS_fold,pfam_PAS_4,pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,superfamily_PAS,smart_PAC,smart_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG/ELK/ERG,prints_K_chnl_volt-dep_ELK,prints_K_chnl_volt-dep_ERG,pfscan_cNMP-bd_dom,pfscan_PAS,pfscan_PAS-assoc_C,tigrfam_PAS	-	no_errors	KCNH4	HGNC	ENSG00000089558				71	0	0	55	21	27.6316
COASY	0	genome.wustl.edu	37	17	40717259	40717259	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	17	40717259	40717259	A	G	SNP	COASY	ENST00000590958	human	ensembl	74_37	+1	known	missense	c.1404	p.I468M	0.000	pfam_Depp_CoAkinase,superfamily_P-loop_NTPase,tigrfam_Depp_CoAkinase	pfam_Depp_CoAkinase,pfam_Cyt_trans-like,superfamily_P-loop_NTPase,tigrfam_Depp_CoAkinase	-	no_errors	COASY	HGNC	ENSG00000068120				267	0	0	213	38	15.1394
RUNDC1	0	genome.wustl.edu	37	17	41143362	41143362	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	17	41143362	41143362	T	C	SNP	RUNDC1	ENST00000361677	human	ensembl	74_37	+1	known	missense	c.1471	p.S491P	1.000	pfam_Run,pfscan_Run	pfam_Run,smart_Run,pfscan_Run	-	no_errors	RUNDC1	HGNC	ENSG00000198863				119	0	0	82	25	23.3645
NBR1	0	genome.wustl.edu	37	17	41343459	41343459	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	17	41343459	41343459	C	T	SNP	NBR1	ENST00000341165	human	ensembl	74_37	+1	known	missense	c.934	p.R312C	1.000	NULL	pfam_OPR_PB1,pfam_Znf_ZZ,superfamily_UBA-like,smart_OPR_PB1,smart_Znf_ZZ,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Znf_ZZ	-	no_errors	NBR1	HGNC	ENSG00000188554				27	0	0	21	4	16
MPP2	0	genome.wustl.edu	37	17	41958098	41958098	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	17	41958098	41958098	T	C	SNP	MPP2	ENST00000461854	human	ensembl	74_37	-1	known	missense	c.1183	p.I395V	1.000	pfam_GK/Ca_channel_bsu,superfamily_P-loop_NTPase,smart_GK/Ca_channel_bsu,pfscan_Guanylate_kin-like	pfam_GK/Ca_channel_bsu,pfam_L27_C,pfam_SH3_2,pfam_PDZ,pfam_SH3_domain,superfamily_P-loop_NTPase,superfamily_SH3_domain,superfamily_PDZ,smart_L27,smart_PDZ,smart_SH3_domain,smart_GK/Ca_channel_bsu,pfscan_L27,pfscan_PDZ,pfscan_SH3_domain,pfscan_Guanylate_kin-like	-	no_errors	MPP2	HGNC	ENSG00000108852				104	0	0	71	28	28.2828
ASB16-AS1	0	genome.wustl.edu	37	17	42253965	42253965	+	RNA	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	17	42253965	42253965	C	T	SNP	ASB16-AS1	ENST00000585457	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ASB16-AS1	HGNC	ENSG00000267080				80	0	0	62	38	38
DBF4B	0	genome.wustl.edu	37	17	42824781	42824781	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	17	42824781	42824781	G	T	SNP	DBF4B	ENST00000315005	human	ensembl	74_37	+1	known	missense	c.962	p.R321L	0.910	pfam_Znf_DBF,smart_Znf_DBF	pfam_Znf_DBF,superfamily_BRCT_dom,smart_Znf_DBF	-	no_errors	DBF4B	HGNC	ENSG00000161692				91	0	0	75	16	17.5824
KANSL1	0	genome.wustl.edu	37	17	44115975	44115975	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	17	44115975	44115975	G	A	SNP	KANSL1	ENST00000262419	human	ensembl	74_37	-1	known	nonsense	c.2470	p.R824*	1.000	NULL	NULL	-	no_errors	KANSL1	HGNC	ENSG00000120071				72	0	0	53	21	28.3784
EFCAB13	0	genome.wustl.edu	37	17	45473245	45473245	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	17	45473245	45473245	C	G	SNP	EFCAB13	ENST00000331493	human	ensembl	74_37	+1	known	missense	c.1847	p.T616R	0.043	NULL	NULL	-	no_errors	EFCAB13	HGNC	ENSG00000178852				74	0	0	94	10	9.61538
NFE2L1	0	genome.wustl.edu	37	17	46136704	46136704	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	17	46136704	46136704	C	T	SNP	NFE2L1	ENST00000362042	human	ensembl	74_37	+1	known	missense	c.2020	p.R674C	1.000	pfam_bZIP,superfamily_TF_DNA-bd,smart_bZIP,pfscan_bZIP	pfam_bZIP,superfamily_TF_DNA-bd,smart_bZIP,pfscan_bZIP	-	no_errors	NFE2L1	HGNC	ENSG00000082641				91	0	0	59	19	24.359
ENSG00000230532	0	genome.wustl.edu	37	17	47009173	47009173	+	RNA	SNP	G	G	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	17	47009173	47009173	G	T	SNP	ENSG00000230532	ENST00000435491	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	AC091133.1	Clone_based_vega_gene	ENSG00000230532				67	0	0	32	16	33.3333
SLC25A11	0	genome.wustl.edu	37	17	4842264	4842264	+	Silent	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	17	4842264	4842264	C	T	SNP	SLC25A11	ENST00000225665	human	ensembl	74_37	-1	known	silent	c.255	p.S85	0.956	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	-	no_errors	SLC25A11	HGNC	ENSG00000108528				107	0	0	59	24	28.9157
CACNA1G	0	genome.wustl.edu	37	17	48649364	48649364	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	17	48649364	48649364	C	T	SNP	CACNA1G	ENST00000359106	human	ensembl	74_37	+1	known	missense	c.712	p.R238W	0.817	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_PKD1_2_channel,prints_VDCC_T_a1su,prints_VDCCAlpha1	-	no_errors	CACNA1G	HGNC	ENSG00000006283				63	0	0	43	24	35.8209
ABCC3	0	genome.wustl.edu	37	17	48744971	48744971	+	Silent	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	17	48744971	48744971	C	T	SNP	ABCC3	ENST00000285238	human	ensembl	74_37	+1	known	silent	c.1488	p.N496	0.525	pfam_ABC_transptr_TM_dom,superfamily_ABC1_TM_dom,pfscan_ABC1_TM_dom,tigrfam_Multidrug-R_assoc	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC1_TM_dom,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom,tigrfam_Multidrug-R_assoc	-	no_errors	ABCC3	HGNC	ENSG00000108846				60	0	0	60	12	16.6667
SPAG9	0	genome.wustl.edu	37	17	49098616	49098616	+	Silent	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	17	49098616	49098616	G	A	SNP	SPAG9	ENST00000262013	human	ensembl	74_37	-1	known	silent	c.894	p.N298	0.032	NULL	pfam_JNK/Rab-associated_protein-1_N,superfamily_WD40_repeat_dom	-	no_errors	SPAG9	HGNC	ENSG00000008294				377	0	0	291	112	27.7916
ZNF594	0	genome.wustl.edu	37	17	5086767	5086767	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	17	5086767	5086767	G	C	SNP	ZNF594	ENST00000399604	human	ensembl	74_37	-1	known	missense	c.785	p.T262S	1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF594	HGNC	ENSG00000180626				249	0	0	243	18	6.89655
NUP88	0	genome.wustl.edu	37	17	5290760	5290760	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	17	5290760	5290760	C	T	SNP	NUP88	ENST00000573584	human	ensembl	74_37	-1	known	missense	c.1862	p.R621H	1.000	pfam_Nucleoporin_Nup88	pfam_Nucleoporin_Nup88	-	no_errors	NUP88	HGNC	ENSG00000108559				269	0	0	234	68	22.5166
ANKFN1	0	genome.wustl.edu	37	17	54554883	54554883	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	17	54554883	54554883	G	A	SNP	ANKFN1	ENST00000318698	human	ensembl	74_37	+1	known	missense	c.1817	p.R606H	1.000	NULL	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Fibronectin_type3,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Fibronectin_type3	-	no_errors	ANKFN1	HGNC	ENSG00000153930				126	0	0	93	31	25
SEPT4	0	genome.wustl.edu	37	17	56599207	56599207	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	17	56599207	56599207	G	A	SNP	SEPT4	ENST00000457347	human	ensembl	74_37	-1	known	missense	c.850	p.P284S	1.000	pfam_Cell_div_GTP-bd,superfamily_P-loop_NTPase	pfam_Cell_div_GTP-bd,superfamily_P-loop_NTPase	-	no_errors	SEPT4	HGNC	ENSG00000108387				80	0	0	43	21	32.8125
TEX14	0	genome.wustl.edu	37	17	56690811	56690811	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	17	56690811	56690811	C	T	SNP	TEX14	ENST00000240361	human	ensembl	74_37	-1	known	missense	c.994	p.G332S	0.991	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Prot_kinase_dom	-	no_errors	TEX14	HGNC	ENSG00000121101				168	0	0	132	41	23.6994
PPM1E	0	genome.wustl.edu	37	17	57057506	57057506	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	17	57057506	57057506	G	A	SNP	PPM1E	ENST00000308249	human	ensembl	74_37	+1	known	missense	c.1382	p.S461N	1.000	pfam_PP2C-like_dom,superfamily_PP2C-like_dom,smart_PP2C-like_dom	pfam_PP2C-like_dom,superfamily_PP2C-like_dom,smart_PP2C-like_dom	-	no_errors	PPM1E	HGNC	ENSG00000175175				80	0	0	61	19	23.75
SMG8	0	genome.wustl.edu	37	17	57289173	57289173	+	Splice_Site	SNP	T	T	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	17	57289173	57289173	T	C	SNP	SMG8	ENST00000300917	human	ensembl	74_37	+1	known	splice_site	c.1759+2	e1+2	1.000	-	-	-	no_errors	SMG8	HGNC	ENSG00000167447				82	0	0	84	5	5.61798
DHX40	0	genome.wustl.edu	37	17	57679906	57679906	+	Silent	SNP	C	C	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	17	57679906	57679906	C	A	SNP	DHX40	ENST00000251241	human	ensembl	74_37	+1	known	silent	c.1830	p.T610	0.128	NULL	pfam_DUF1605,pfam_Helicase-assoc_dom,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_T2SS_protein-E,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DHX40	HGNC	ENSG00000108406				75	0	0	52	16	23.5294
APPBP2	0	genome.wustl.edu	37	17	58538264	58538264	+	RNA	SNP	C	C	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	17	58538264	58538264	C	A	SNP	APPBP2	ENST00000592995	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	APPBP2	HGNC	ENSG00000062725				12	0	0	9	4	30.7692
STRADA	0	genome.wustl.edu	37	17	61780974	61780974	+	Silent	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	17	61780974	61780974	G	A	SNP	STRADA	ENST00000336174	human	ensembl	74_37	-1	known	silent	c.1281	p.D427	0.146	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	STRADA	HGNC	ENSG00000266173				37	0	0	20	10	33.3333
SCN4A	0	genome.wustl.edu	37	17	62049563	62049563	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	17	62049563	62049563	T	C	SNP	SCN4A	ENST00000435607	human	ensembl	74_37	-1	known	missense	c.415	p.I139V	1.000	NULL	pfam_Ion_trans_dom,pfam_Na_trans_assoc,pfam_PKD1_2_channel,pfscan_IQ_motif_EF-hand-BS,prints_Na_channel_a4su,prints_Na_channel_asu,prints_PKD_2	-	no_errors	SCN4A	HGNC	ENSG00000007314				27	0	0	15	9	37.5
SMURF2	0	genome.wustl.edu	37	17	62587239	62587239	+	Silent	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	17	62587239	62587239	C	T	SNP	SMURF2	ENST00000262435	human	ensembl	74_37	-1	known	silent	c.363	p.G121	1.000	superfamily_C2_dom	pfam_HECT,pfam_WW_dom,pfam_C2_dom,superfamily_HECT,superfamily_C2_dom,superfamily_WW_dom,smart_C2_dom,smart_WW_dom,smart_HECT,pfscan_HECT,pfscan_C2_dom,pfscan_WW_dom	-	no_errors	SMURF2	HGNC	ENSG00000108854				179	0	0	127	30	19.1083
ALOX12	0	genome.wustl.edu	37	17	6905060	6905060	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	17	6905060	6905060	C	T	SNP	ALOX12	ENST00000251535	human	ensembl	74_37	+1	known	missense	c.1091	p.T364I	1.000	pfam_LipOase_C,superfamily_LipOase_C,prints_LipOase_C	pfam_LipOase_C,pfam_PLAT/LH2_dom,superfamily_LipOase_C,superfamily_Lipase_LipOase,smart_PLAT/LH2_dom,pfscan_PLAT/LH2_dom,prints_LipOase_mml,prints_LipOase_C	-	no_errors	ALOX12	HGNC	ENSG00000108839				183	0	0	157	64	28.9593
BCL6B	0	genome.wustl.edu	37	17	6927125	6927125	+	Silent	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	17	6927125	6927125	C	T	SNP	BCL6B	ENST00000293805	human	ensembl	74_37	+1	known	silent	c.135	p.G45	1.000	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like	pfam_BTB_POZ,pfam_Znf_C2H2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	BCL6B	HGNC	ENSG00000161940				58	0	0	32	18	36
KIF19	0	genome.wustl.edu	37	17	72346594	72346594	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	17	72346594	72346594	G	A	SNP	KIF19	ENST00000389916	human	ensembl	74_37	+1	known	missense	c.1268	p.R423Q	1.000	NULL	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,prints_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	-	no_errors	KIF19	HGNC	ENSG00000196169				12	0	0	9	6	40
ACAP1	0	genome.wustl.edu	37	17	7253540	7253540	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	17	7253540	7253540	G	A	SNP	ACAP1	ENST00000158762	human	ensembl	74_37	+1	known	missense	c.2056	p.A686T	1.000	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_ArfGAP,pfam_Pleckstrin_homology,superfamily_Ankyrin_rpt-contain_dom,smart_Pleckstrin_homology,smart_ArfGAP,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Pleckstrin_homology,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_ArfGAP,prints_ArfGAP	-	no_errors	ACAP1	HGNC	ENSG00000072818				94	0	0	57	20	25.974
NAT9	0	genome.wustl.edu	37	17	72768467	72768467	+	RNA	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	17	72768467	72768467	C	T	SNP	NAT9	ENST00000577428	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	NAT9	HGNC	ENSG00000109065				20	0	0	14	6	30
NUP85	0	genome.wustl.edu	37	17	73227720	73227720	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	17	73227720	73227720	T	C	SNP	NUP85	ENST00000245544	human	ensembl	74_37	+1	known	missense	c.1231	p.F411L	1.000	pfam_Nucleoporin_Nup85	pfam_Nucleoporin_Nup85	-	no_errors	NUP85	HGNC	ENSG00000125450				145	0	0	141	9	6
UBE2O	0	genome.wustl.edu	37	17	74395938	74395938	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	17	74395938	74395938	G	C	SNP	UBE2O	ENST00000319380	human	ensembl	74_37	-1	known	missense	c.1220	p.S407C	0.022	NULL	pfam_UBQ-conjugat_E2,superfamily_UBQ-conjugating_enzyme/RWD,pfscan_UBQ-conjugat_E2	-	no_errors	UBE2O	HGNC	ENSG00000175931				217	0	0	171	22	11.399
AANAT	0	genome.wustl.edu	37	17	74465822	74465822	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	17	74465822	74465822	C	T	SNP	AANAT	ENST00000250615	human	ensembl	74_37	+1	known	nonsense	c.529	p.Q177*	1.000	pfam_GNAT_dom,superfamily_Acyl_CoA_acyltransferase,pfscan_GNAT_dom	pfam_GNAT_dom,superfamily_Acyl_CoA_acyltransferase,pfscan_GNAT_dom	-	no_errors	AANAT	HGNC	ENSG00000129673				13	0	0	7	4	36.3636
TNRC6C	0	genome.wustl.edu	37	17	76099610	76099610	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	17	76099610	76099610	C	T	SNP	TNRC6C	ENST00000335749	human	ensembl	74_37	+1	known	missense	c.4796	p.A1599V	1.000	NULL	pfam_Argonaute_hook_dom,pfam_UBA/Ts_N,superfamily_UBA-like,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk	-	no_errors	TNRC6C	HGNC	ENSG00000078687				70	0	0	56	9	13.8462
DNAH17	0	genome.wustl.edu	37	17	76421579	76421579	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	17	76421579	76421579	G	A	SNP	DNAH17	ENST00000389840	human	ensembl	74_37	-1	known	missense	c.13058	p.S4353L	1.000	pfam_Dynein_heavy_dom	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,superfamily_HR1_rho-bd	-	no_errors	DNAH17	HGNC	ENSG00000187775				54	0	0	49	8	14.0351
KDM6B	0	genome.wustl.edu	37	17	7756423	7756423	+	Silent	SNP	C	C	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	17	7756423	7756423	C	A	SNP	KDM6B	ENST00000254846	human	ensembl	74_37	+1	known	silent	c.4716	p.A1572	1.000	NULL	pfam_JmjC_dom,smart_JmjC_dom,pfscan_JmjC_dom	-	no_errors	KDM6B	HGNC	ENSG00000132510				51	0	0	34	8	19.0476
AATK	0	genome.wustl.edu	37	17	79095107	79095107	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	17	79095107	79095107	C	T	SNP	AATK	ENST00000326724	human	ensembl	74_37	-1	known	missense	c.2629	p.D877N	0.065	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	AATK	HGNC	ENSG00000181409				32	0	0	30	6	16.6667
ALOXE3	0	genome.wustl.edu	37	17	8000064	8000064	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	17	8000064	8000064	C	T	SNP	ALOXE3	ENST00000318227	human	ensembl	74_37	-1	known	missense	c.2413	p.A805T	0.001	pfam_LipOase_C,superfamily_LipOase_C	pfam_LipOase_C,pfam_PLAT/LH2_dom,superfamily_LipOase_C,superfamily_Lipase_LipOase,smart_PLAT/LH2_dom,pfscan_PLAT/LH2_dom,prints_LipOase_C	-	no_errors	ALOXE3	HGNC	ENSG00000179148				115	1	0.862069	79	37	31.8966
DUS1L	0	genome.wustl.edu	37	17	80021384	80021384	+	Silent	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	17	80021384	80021384	G	A	SNP	DUS1L	ENST00000306796	human	ensembl	74_37	-1	known	silent	c.357	p.G119	0.538	pfam_tRNA_hU_synthase	pfam_tRNA_hU_synthase	-	no_errors	DUS1L	HGNC	ENSG00000169718				236	0	0	186	52	21.8487
TMEM107	0	genome.wustl.edu	37	17	8077872	8077872	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	17	8077872	8077872	A	G	SNP	TMEM107	ENST00000316425	human	ensembl	74_37	-1	known	missense	c.337	p.C113R	1.000	NULL	NULL	-	no_errors	TMEM107	HGNC	ENSG00000179029				322	0	0	330	32	8.83978
CTC1	0	genome.wustl.edu	37	17	8140698	8140698	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	17	8140698	8140698	C	T	SNP	CTC1	ENST00000315684	human	ensembl	74_37	-1	known	missense	c.787	p.V263M	0.904	NULL	NULL	-	no_errors	CTC1	HGNC	ENSG00000178971				103	0	0	76	19	20
NDEL1	0	genome.wustl.edu	37	17	8350200	8350200	+	Silent	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	17	8350200	8350200	C	T	SNP	NDEL1	ENST00000299734	human	ensembl	74_37	+1	known	silent	c.369	p.D123	0.998	NULL	pfam_NUDE_C	-	no_errors	NDEL1	HGNC	ENSG00000166579				46	0	0	36	7	16.2791
PIEZO2	0	genome.wustl.edu	37	18	10696408	10696408	+	Silent	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	18	10696408	10696408	G	A	SNP	PIEZO2	ENST00000538948	human	ensembl	74_37	-1	known	silent	c.489	p.F163	1.000	NULL	pfam_Piezo	-	no_errors	PIEZO2	HGNC	ENSG00000154864				105	0	0	46	26	36.1111
CHMP1B	0	genome.wustl.edu	37	18	11851987	11851987	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	18	11851987	11851987	G	T	SNP	CHMP1B	ENST00000526991	human	ensembl	74_37	+1	known	missense	c.477	p.E159D	1.000	pfam_Snf7	pfam_Snf7	-	no_errors	CHMP1B	HGNC	ENSG00000255112				29	0	0	22	15	40.5405
LAMA3	0	genome.wustl.edu	37	18	21422380	21422380	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	18	21422380	21422380	C	T	SNP	LAMA3	ENST00000313654	human	ensembl	74_37	+1	known	missense	c.3358	p.R1120C	0.292	NULL	pfam_EGF_laminin,pfam_Laminin_G,pfam_Laminin_I,pfam_Laminin_N,pfam_Laminin_II,pfam_Laminin_B_type_IV,superfamily_ConA-like_lec_gl_sf,superfamily_Growth_fac_rcpt_N_dom,superfamily_Galactose-bd-like,superfamily_STAT_TF_coiled-coil,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	LAMA3	HGNC	ENSG00000053747				222	0	0	164	42	20.3883
DSC2	0	genome.wustl.edu	37	18	28654830	28654830	+	Silent	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	18	28654830	28654830	G	A	SNP	DSC2	ENST00000280904	human	ensembl	74_37	-1	known	silent	c.1707	p.D569	0.744	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin,prints_Desmosomal_cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin,prints_Cadherin/Desmocollin,prints_Desmosomal_cadherin	-	no_errors	DSC2	HGNC	ENSG00000134755				47	0	0	31	19	38
DSG4	0	genome.wustl.edu	37	18	28991145	28991145	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	18	28991145	28991145	G	A	SNP	DSG4	ENST00000359747	human	ensembl	74_37	+1	known	missense	c.2146	p.A716T	0.000	NULL	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin,prints_Desmoglein,prints_Desmosomal_cadherin	-	no_errors	DSG4	HGNC	ENSG00000175065				65	0	0	50	14	21.875
LPIN2	0	genome.wustl.edu	37	18	2937883	2937883	+	Silent	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	18	2937883	2937883	C	T	SNP	LPIN2	ENST00000261596	human	ensembl	74_37	-1	known	silent	c.975	p.V325	1.000	NULL	pfam_LNS2,pfam_Lipin_N,superfamily_HAD-like_dom,smart_LNS2	-	no_errors	LPIN2	HGNC	ENSG00000101577				140	0	0	107	28	20.7407
GAREM	0	genome.wustl.edu	37	18	29867432	29867432	+	Silent	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	18	29867432	29867432	G	A	SNP	GAREM	ENST00000269209	human	ensembl	74_37	-1	known	silent	c.1128	p.R376	0.195	NULL	superfamily_SAM/pointed	-	no_errors	GAREM	HGNC	ENSG00000141441				91	0	0	68	23	25.2747
KLHL14	0	genome.wustl.edu	37	18	30260447	30260447	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	18	30260447	30260447	G	A	SNP	KLHL14	ENST00000359358	human	ensembl	74_37	-1	known	missense	c.1354	p.R452C	1.000	pfam_Kelch_1,smart_Kelch_1,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL14	HGNC	ENSG00000197705				134	0	0	118	7	5.6
KLHL14	0	genome.wustl.edu	37	18	30275498	30275498	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	18	30275498	30275498	C	T	SNP	KLHL14	ENST00000359358	human	ensembl	74_37	-1	known	missense	c.1087	p.A363T	1.000	pfam_Kelch_1,smart_Kelch_1,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL14	HGNC	ENSG00000197705				52	0	0	38	14	26.9231
DTNA	0	genome.wustl.edu	37	18	32346001	32346001	+	Silent	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	18	32346001	32346001	C	T	SNP	DTNA	ENST00000269190	human	ensembl	74_37	+1	known	silent	c.144	p.C48	1.000	pfam_EF-hand_dom_typ1,pirsf_Distrobrevin	pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_Znf_ZZ,smart_Znf_ZZ,pirsf_Distrobrevin,pfscan_Znf_ZZ	-	no_errors	DTNA	HGNC	ENSG00000134769				63	0	0	26	14	35
DTNA	0	genome.wustl.edu	37	18	32391993	32391993	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	18	32391993	32391993	A	C	SNP	DTNA	ENST00000269190	human	ensembl	74_37	+1	known	missense	c.519	p.E173D	1.000	pfam_EF-hand_dom_typ2,pirsf_Distrobrevin	pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_Znf_ZZ,smart_Znf_ZZ,pirsf_Distrobrevin,pfscan_Znf_ZZ	-	no_errors	DTNA	HGNC	ENSG00000134769				120	0	0	100	29	22.4806
COLEC12	0	genome.wustl.edu	37	18	331668	331668	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	18	331668	331668	T	C	SNP	COLEC12	ENST00000400256	human	ensembl	74_37	-1	known	missense	c.2063	p.K688R	0.988	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	pfam_C-type_lectin,pfam_Collagen,superfamily_C-type_lectin_fold,smart_C-type_lectin,prints_AntifreezeII,pfscan_C-type_lectin	-	no_errors	COLEC12	HGNC	ENSG00000158270				84	0	0	57	17	22.973
COLEC12	0	genome.wustl.edu	37	18	348092	348092	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	18	348092	348092	C	A	SNP	COLEC12	ENST00000400256	human	ensembl	74_37	-1	known	missense	c.253	p.A85S	1.000	NULL	pfam_C-type_lectin,pfam_Collagen,superfamily_C-type_lectin_fold,smart_C-type_lectin,prints_AntifreezeII,pfscan_C-type_lectin	-	no_errors	COLEC12	HGNC	ENSG00000158270				99	0	0	59	25	29.7619
SLC14A2	0	genome.wustl.edu	37	18	43205723	43205723	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	18	43205723	43205723	G	A	SNP	SLC14A2	ENST00000255226	human	ensembl	74_37	+1	known	missense	c.226	p.D76N	0.003	NULL	pfam_Urea_transporter	-	no_errors	SLC14A2	HGNC	ENSG00000132874				33	0	0	18	10	35.7143
EPG5	0	genome.wustl.edu	37	18	43532417	43532417	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	18	43532417	43532417	G	A	SNP	EPG5	ENST00000282041	human	ensembl	74_37	-1	known	missense	c.1201	p.L401F	1.000	NULL	NULL	-	no_errors	EPG5	HGNC	ENSG00000152223				127	0	0	104	52	33.3333
RNF165	0	genome.wustl.edu	37	18	44036544	44036544	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	18	44036544	44036544	A	C	SNP	RNF165	ENST00000269439	human	ensembl	74_37	+1	known	missense	c.986	p.K329T	1.000	pfam_Znf_C3HC4_RING-type,smart_Znf_RING-CH,smart_Znf_RING,pfscan_Znf_RING	pfam_Znf_C3HC4_RING-type,smart_Znf_RING-CH,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF165	HGNC	ENSG00000141622				113	0	0	80	26	24.5283
MYO5B	0	genome.wustl.edu	37	18	47511134	47511134	+	Silent	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	18	47511134	47511134	G	A	SNP	MYO5B	ENST00000285039	human	ensembl	74_37	-1	known	silent	c.900	p.D300	0.995	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Dil_domain,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,superfamily_Prefoldin,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_Dilute,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO5B	HGNC	ENSG00000167306				103	0	0	62	28	31.1111
DCC	0	genome.wustl.edu	37	18	50278453	50278453	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	18	50278453	50278453	C	T	SNP	DCC	ENST00000442544	human	ensembl	74_37	+1	known	missense	c.121	p.R41C	1.000	pfscan_Ig-like_dom	pfam_Neogenin_C,pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	DCC	HGNC	ENSG00000187323				51	0	0	31	12	27.907
ATP8B1	0	genome.wustl.edu	37	18	55315855	55315855	+	Silent	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	18	55315855	55315855	C	T	SNP	ATP8B1	ENST00000283684	human	ensembl	74_37	-1	known	silent	c.3621	p.S1207	0.171	NULL	pfam_ATPase_P-typ_transduc_dom_A,pfam_HAD-like_dom,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Plipid-transp,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP8B1	HGNC	ENSG00000081923				26	0	0	16	3	15.7895
ZNF532	0	genome.wustl.edu	37	18	56586354	56586354	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	18	56586354	56586354	G	A	SNP	ZNF532	ENST00000336078	human	ensembl	74_37	+1	known	missense	c.835	p.A279T	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF532	HGNC	ENSG00000074657				153	0	0	128	48	27.2727
HMSD	0	genome.wustl.edu	37	18	61621687	61621687	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	18	61621687	61621687	C	T	SNP	HMSD	ENST00000408945	human	ensembl	74_37	+1	known	nonsense	c.118	p.R40*	0.200	pfam_Serpin_dom,superfamily_Serpin_dom	pfam_Serpin_dom,superfamily_Serpin_dom	-	no_errors	HMSD	HGNC	ENSG00000221887				192	0	0	148	43	22.5131
DSEL	0	genome.wustl.edu	37	18	65180462	65180462	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	18	65180462	65180462	T	G	SNP	DSEL	ENST00000310045	human	ensembl	74_37	-1	known	missense	c.1414	p.S472R	1.000	NULL	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase,superfamily_Chondroitin_lyas	-	no_errors	DSEL	HGNC	ENSG00000171451				101	0	0	101	10	9.00901
SOCS6	0	genome.wustl.edu	37	18	67993058	67993058	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	18	67993058	67993058	A	G	SNP	SOCS6	ENST00000397942	human	ensembl	74_37	+1	known	missense	c.1154	p.Y385C	1.000	pfam_SH2,smart_SH2,pfscan_SH2	pfam_SOCS_C,pfam_SH2,smart_SH2,smart_SOCS_C,pfscan_SOCS_C,pfscan_SH2	-	no_errors	SOCS6	HGNC	ENSG00000170677				95	0	0	77	8	9.41176
LRRC30	0	genome.wustl.edu	37	18	7231916	7231916	+	Silent	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	18	7231916	7231916	C	T	SNP	LRRC30	ENST00000383467	human	ensembl	74_37	+1	known	silent	c.780	p.I260	0.400	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC30	HGNC	ENSG00000206422				223	0	0	201	21	9.45946
YES1	0	genome.wustl.edu	37	18	732942	732942	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	18	732942	732942	T	C	SNP	YES1	ENST00000314574	human	ensembl	74_37	-1	known	missense	c.1315	p.T439A	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_SH2,pfam_SH3_domain,pfam_SH3_2,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_SH3_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_SH2,pfscan_SH3_domain,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2,prints_SH3_domain	-	no_errors	YES1	HGNC	ENSG00000176105				171	0	0	112	58	34.1176
ZNF236	0	genome.wustl.edu	37	18	74649204	74649204	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	18	74649204	74649204	G	A	SNP	ZNF236	ENST00000253159	human	ensembl	74_37	+1	known	missense	c.4681	p.V1561M	0.686	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF236	HGNC	ENSG00000130856				69	0	0	66	18	21.4286
KCNG2	0	genome.wustl.edu	37	18	77659062	77659062	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	18	77659062	77659062	G	A	SNP	KCNG2	ENST00000316249	human	ensembl	74_37	+1	known	missense	c.647	p.R216H	0.894	NULL	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv6,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv	-	no_errors	KCNG2	HGNC	ENSG00000178342				30	0	0	15	4	21.0526
PQLC1	0	genome.wustl.edu	37	18	77679327	77679327	+	Silent	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	18	77679327	77679327	G	A	SNP	PQLC1	ENST00000397778	human	ensembl	74_37	-1	known	silent	c.465	p.G155	0.612	NULL	smart_CTNS	-	no_errors	PQLC1	HGNC	ENSG00000122490				71	0	0	43	17	28.3333
SOGA2	0	genome.wustl.edu	37	18	8824926	8824926	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	18	8824926	8824926	C	T	SNP	SOGA2	ENST00000359865	human	ensembl	74_37	+1	known	missense	c.3418	p.R1140W	0.008	NULL	pfam_SOGA	-	no_errors	SOGA2	HGNC	ENSG00000168502				105	0	0	74	29	28.1553
DNMT1	0	genome.wustl.edu	37	19	10251513	10251513	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	19	10251513	10251513	C	T	SNP	DNMT1	ENST00000359526	human	ensembl	74_37	-1	known	missense	c.3467	p.R1156Q	1.000	pirsf_DNA_C5-MeTrfase_1_euk,pfam_C5_MeTfrase,prints_C5_MeTfrase	pirsf_DNA_C5-MeTrfase_1_euk,pfam_C5_MeTfrase,pfam_BAH_dom,pfam_Cytosine_MeTrfase1_RFD,pfam_DMAP1-bd,pfam_Znf_CXXC,smart_BAH_dom,prints_C5_MeTfrase,pfscan_BAH_dom,pfscan_Znf_CXXC	-	no_errors	DNMT1	HGNC	ENSG00000130816				177	0	0	106	40	27.3973
DNMT1	0	genome.wustl.edu	37	19	10260184	10260184	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	19	10260184	10260184	A	G	SNP	DNMT1	ENST00000359526	human	ensembl	74_37	-1	known	missense	c.2531	p.I844T	0.999	pirsf_DNA_C5-MeTrfase_1_euk,pfam_BAH_dom,smart_BAH_dom,pfscan_BAH_dom	pirsf_DNA_C5-MeTrfase_1_euk,pfam_C5_MeTfrase,pfam_BAH_dom,pfam_Cytosine_MeTrfase1_RFD,pfam_DMAP1-bd,pfam_Znf_CXXC,smart_BAH_dom,prints_C5_MeTfrase,pfscan_BAH_dom,pfscan_Znf_CXXC	-	no_errors	DNMT1	HGNC	ENSG00000130816				544	0	0	398	146	26.8382
HMHA1	0	genome.wustl.edu	37	19	1074128	1074128	+	Silent	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	19	1074128	1074128	C	T	SNP	HMHA1	ENST00000313093	human	ensembl	74_37	+1	known	silent	c.816	p.D272	0.994	NULL	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_FCH_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_RhoGAP_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_RhoGAP_dom	-	no_errors	HMHA1	HGNC	ENSG00000180448				62	0	0	64	6	8.57143
RGL3	0	genome.wustl.edu	37	19	11526717	11526717	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	19	11526717	11526717	G	A	SNP	RGL3	ENST00000393423	human	ensembl	74_37	-1	known	missense	c.533	p.A178V	0.873	superfamily_Ras_GEF_dom,smart_Ras-like_Gua-exchang_fac_N,pfscan_Ras-like_Gua-exchang_fac_N	pfam_RasGRF_CDC25,pfam_Ras-assoc,pfam_Ras-like_Gua-exchang_fac_N,superfamily_Ras_GEF_dom,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,smart_Ras-assoc,pfscan_Ras-assoc,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RGL3	HGNC	ENSG00000205517				192	1	0.518135	129	71	35.5
CCDC151	0	genome.wustl.edu	37	19	11534692	11534692	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	19	11534692	11534692	G	A	SNP	CCDC151	ENST00000356392	human	ensembl	74_37	-1	known	missense	c.970	p.R324C	0.949	NULL	NULL	-	no_errors	CCDC151	HGNC	ENSG00000198003				215	0	0	193	13	6.31068
PRKCSH	0	genome.wustl.edu	37	19	11558373	11558373	+	Silent	SNP	A	A	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	19	11558373	11558373	A	G	SNP	PRKCSH	ENST00000252455	human	ensembl	74_37	+1	known	silent	c.969	p.E323	0.000	NULL	pfam_PRKCSH,superfamily_Man6P_isomerase_rcpt-bd_dom,superfamily_LDrepeatLR_classA_rpt,pfscan_EF_hand_dom	-	no_errors	PRKCSH	HGNC	ENSG00000130175				21	0	0	18	3	14.2857
ZNF439	0	genome.wustl.edu	37	19	11979192	11979192	+	Silent	SNP	A	A	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	19	11979192	11979192	A	G	SNP	ZNF439	ENST00000304030	human	ensembl	74_37	+1	known	silent	c.1308	p.K436	1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF439	HGNC	ENSG00000171291				111	0	0	80	17	17.5258
ZNF709	0	genome.wustl.edu	37	19	12575998	12575998	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	19	12575998	12575998	G	T	SNP	ZNF709	ENST00000397732	human	ensembl	74_37	-1	known	missense	c.738	p.H246Q	0.992	pfam_Znf_C2H2,pfam_Znf_C2H2_jaz,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,pfam_Znf_C2H2_jaz,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF709	HGNC	ENSG00000242852				151	1	0.657895	160	9	5.32544
ASNA1	0	genome.wustl.edu	37	19	12848425	12848425	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	19	12848425	12848425	A	G	SNP	ASNA1	ENST00000357332	human	ensembl	74_37	+1	known	missense	c.106	p.S36G	1.000	superfamily_P-loop_NTPase	pfam_Anion-transp_ATPase-like_dom,pfam_CobQ/CobB/MinD/ParA_Nub-bd_dom,superfamily_P-loop_NTPase,tigrfam_ATPase_ArsA/GET3	-	no_errors	ASNA1	HGNC	ENSG00000198356				38	0	0	35	8	18.6047
MAST1	0	genome.wustl.edu	37	19	12962928	12962928	+	Splice_Site	SNP	G	G	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	19	12962928	12962928	G	T	SNP	MAST1	ENST00000251472	human	ensembl	74_37	+1	known	splice_site	c.877-1	e9-1	1.000	-	-	-	no_errors	MAST1	HGNC	ENSG00000105613				142	0	0	132	10	7.04225
MAST1	0	genome.wustl.edu	37	19	12977542	12977542	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	19	12977542	12977542	G	A	SNP	MAST1	ENST00000251472	human	ensembl	74_37	+1	known	missense	c.2105	p.R702H	1.000	superfamily_Kinase-like_dom	pfam_MA_Ser/Thr_Kinase_dom,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_PDZ,superfamily_Kinase-like_dom,superfamily_MAST_pre-PK_dom,superfamily_PDZ,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_PDZ,pfscan_PDZ,pfscan_Prot_kinase_dom	-	no_errors	MAST1	HGNC	ENSG00000105613				39	0	0	25	12	32.4324
MAST1	0	genome.wustl.edu	37	19	12984600	12984600	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	19	12984600	12984600	C	T	SNP	MAST1	ENST00000251472	human	ensembl	74_37	+1	known	missense	c.3629	p.T1210M	1.000	NULL	pfam_MA_Ser/Thr_Kinase_dom,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_PDZ,superfamily_Kinase-like_dom,superfamily_MAST_pre-PK_dom,superfamily_PDZ,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_PDZ,pfscan_PDZ,pfscan_Prot_kinase_dom	-	no_errors	MAST1	HGNC	ENSG00000105613				16	0	0	4	4	50
MUM1	0	genome.wustl.edu	37	19	1360408	1360408	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	19	1360408	1360408	C	T	SNP	MUM1	ENST00000344663	human	ensembl	74_37	+1	known	missense	c.491	p.S164L	0.000	NULL	pfam_PWWP_dom	-	no_errors	MUM1	HGNC	ENSG00000160953				63	0	0	54	21	28
C19orf57	0	genome.wustl.edu	37	19	14000134	14000134	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	19	14000134	14000134	T	C	SNP	C19orf57	ENST00000454313	human	ensembl	74_37	-1	known	missense	c.1535	p.Q512R	0.000	NULL	NULL	-	no_errors	C19orf57	HGNC	ENSG00000132016				100	0	0	60	16	21.0526
LPHN1	0	genome.wustl.edu	37	19	14269309	14269309	+	Silent	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	19	14269309	14269309	C	T	SNP	LPHN1	ENST00000340736	human	ensembl	74_37	-1	known	silent	c.2220	p.T740	0.994	pfam_DUF3497	pfam_GPCR_2_latrophilin_rcpt_C,pfam_Olfac-like,pfam_DUF3497,pfam_GPCR_2_secretin-like,pfam_Lectin_gal-bd_dom,pfam_GPS_dom,pfam_GPCR_2_extracellular_dom,smart_Olfac-like,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_GPS_dom,pfscan_Lectin_gal-bd_dom,pfscan_Olfac-like,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GPCR_2_latrophilin,prints_GPCR_2_secretin-like	-	no_errors	LPHN1	HGNC	ENSG00000072071				45	0	0	49	8	14.0351
LPHN1	0	genome.wustl.edu	37	19	14271040	14271040	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	19	14271040	14271040	C	T	SNP	LPHN1	ENST00000340736	human	ensembl	74_37	-1	known	missense	c.1699	p.A567T	0.999	pfam_DUF3497	pfam_GPCR_2_latrophilin_rcpt_C,pfam_Olfac-like,pfam_DUF3497,pfam_GPCR_2_secretin-like,pfam_Lectin_gal-bd_dom,pfam_GPS_dom,pfam_GPCR_2_extracellular_dom,smart_Olfac-like,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_GPS_dom,pfscan_Lectin_gal-bd_dom,pfscan_Olfac-like,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GPCR_2_latrophilin,prints_GPCR_2_secretin-like	-	no_errors	LPHN1	HGNC	ENSG00000072071				141	0	0	91	26	22.2222
ADAMTSL5	0	genome.wustl.edu	37	19	1510219	1510219	+	Silent	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	19	1510219	1510219	C	T	SNP	ADAMTSL5	ENST00000413997	human	ensembl	74_37	-1	known	silent	c.321	p.Q107	1.000	NULL	pfam_ADAM_spacer1,pfam_Netrin_module_non-TIMP,pfam_Thrombospondin_1_rpt,superfamily_TIMP-like_OB-fold,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,smart_Netrin_module_non-TIMP,pfscan_Netrin_domain,pfscan_Thrombospondin_1_rpt,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTSL5	HGNC	ENSG00000185761				49	0	0	28	14	33.3333
SYDE1	0	genome.wustl.edu	37	19	15223187	15223187	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	19	15223187	15223187	C	T	SNP	SYDE1	ENST00000342784	human	ensembl	74_37	+1	known	missense	c.1609	p.R537C	1.000	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,superfamily_C2_dom,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	SYDE1	HGNC	ENSG00000105137				9	0	0	3	3	50
NOTCH3	0	genome.wustl.edu	37	19	15302455	15302455	+	Silent	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	19	15302455	15302455	C	T	SNP	NOTCH3	ENST00000263388	human	ensembl	74_37	-1	known	silent	c.816	p.T272	0.874	pirsf_Notch,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom	pirsf_Notch,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,pfam_Ankyrin_rpt,pfam_Notch_dom,pfam_Notch_NODP_dom,pfam_Notch_NOD_dom,pfam_EGF_extracell,pfam_DUF3454_notch,superfamily_Ankyrin_rpt-contain_dom,superfamily_Notch_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Notch_dom,smart_Ankyrin_rpt,prints_Notch_3,prints_Notch_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_EG-like_dom,pfscan_Notch_dom	-	no_errors	NOTCH3	HGNC	ENSG00000074181				30	0	0	27	14	34.1463
WIZ	0	genome.wustl.edu	37	19	15558926	15558926	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	19	15558926	15558926	C	A	SNP	WIZ	ENST00000389282	human	ensembl	74_37	-1	known	missense	c.193	p.G65C	0.999	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	WIZ	HGNC	ENSG00000011451				154	0	0	108	49	31.2102
MAP1S	0	genome.wustl.edu	37	19	17836734	17836734	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	19	17836734	17836734	G	A	SNP	MAP1S	ENST00000324096	human	ensembl	74_37	+1	known	missense	c.541	p.A181T	0.000	NULL	NULL	-	no_errors	MAP1S	HGNC	ENSG00000130479				51	0	0	40	17	29.8246
ATP8B3	0	genome.wustl.edu	37	19	1789638	1789638	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	19	1789638	1789638	G	T	SNP	ATP8B3	ENST00000539485	human	ensembl	74_37	-1	known	missense	c.2597	p.S866Y	0.000	superfamily_HAD-like_dom	pfam_ATPase_P-typ_transduc_dom_A,pfam_HAD-like_dom,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Plipid-transp,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP8B3	HGNC	ENSG00000130270				8	0	0	6	3	33.3333
ATP8B3	0	genome.wustl.edu	37	19	1796808	1796808	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	19	1796808	1796808	A	G	SNP	ATP8B3	ENST00000539485	human	ensembl	74_37	-1	known	missense	c.1655	p.L552P	0.000	pfam_HAD-like_dom,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,tigrfam_ATPase_P-typ_Plipid-transp	pfam_ATPase_P-typ_transduc_dom_A,pfam_HAD-like_dom,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Plipid-transp,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP8B3	HGNC	ENSG00000130270				33	0	0	35	4	10.2564
SLC5A5	0	genome.wustl.edu	37	19	17983369	17983369	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	19	17983369	17983369	T	C	SNP	SLC5A5	ENST00000222248	human	ensembl	74_37	+1	known	missense	c.241	p.Y81H	0.995	pfam_Na/solute_symporter,pfscan_Na/solute_symporter,tigrfam_Na/solute_symporter_subgr	pfam_Na/solute_symporter,pfscan_Na/solute_symporter,tigrfam_Na/solute_symporter_subgr	-	no_errors	SLC5A5	HGNC	ENSG00000105641				62	0	0	40	4	9.09091
NCAN	0	genome.wustl.edu	37	19	19337487	19337487	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	19	19337487	19337487	A	C	SNP	NCAN	ENST00000252575	human	ensembl	74_37	+1	known	missense	c.1265	p.K422T	0.199	NULL	pfam_Link,pfam_C-type_lectin,pfam_Sushi_SCR_CCP,pfam_Ig_V-set,superfamily_C-type_lectin_fold,superfamily_Sushi_SCR_CCP,smart_Ig_sub,smart_Link,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_C-type_lectin,smart_Sushi_SCR_CCP,pfscan_EG-like_dom,pfscan_C-type_lectin,pfscan_Link,pfscan_Sushi_SCR_CCP,pfscan_Ig-like_dom,prints_Link,prints_AntifreezeII	-	no_errors	NCAN	HGNC	ENSG00000130287				47	0	0	26	14	35
AP3D1	0	genome.wustl.edu	37	19	2129435	2129435	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	19	2129435	2129435	T	C	SNP	AP3D1	ENST00000355272	human	ensembl	74_37	-1	known	missense	c.614	p.N205S	1.000	pfam_Clathrin/coatomer_adapt-like_N,superfamily_ARM-type_fold,pirsf_AP3_complex_dsu	pfam_BLV_receptor,pfam_Clathrin/coatomer_adapt-like_N,superfamily_ARM-type_fold,pirsf_AP3_complex_dsu	-	no_errors	AP3D1	HGNC	ENSG00000065000				47	0	0	47	14	22.9508
ZNF100	0	genome.wustl.edu	37	19	21927746	21927746	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	19	21927746	21927746	A	C	SNP	ZNF100	ENST00000358296	human	ensembl	74_37	-1	known	missense	c.220	p.L74V	0.037	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF100	HGNC	ENSG00000197020				186	0	0	155	18	10.4046
ZNF43	0	genome.wustl.edu	37	19	21992387	21992387	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	19	21992387	21992387	C	T	SNP	ZNF43	ENST00000354959	human	ensembl	74_37	-1	known	missense	c.452	p.C151Y	0.011	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF43	HGNC	ENSG00000198521				81	0	0	47	21	30.8824
ZNF208	0	genome.wustl.edu	37	19	22156330	22156330	+	Silent	SNP	A	A	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	19	22156330	22156330	A	G	SNP	ZNF208	ENST00000397126	human	ensembl	74_37	-1	novel	silent	c.1506	p.C502	0.998	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF208	HGNC	ENSG00000160321				110	0	0	86	25	22.5225
ZNF726	0	genome.wustl.edu	37	19	24116543	24116543	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	19	24116543	24116543	G	A	SNP	ZNF726	ENST00000322487	human	ensembl	74_37	+1	known	missense	c.1625	p.C542Y	0.999	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF726	HGNC	ENSG00000213967				46	0	0	34	12	26.087
PPAP2C	0	genome.wustl.edu	37	19	288132	288132	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	19	288132	288132	G	A	SNP	PPAP2C	ENST00000327790	human	ensembl	74_37	-1	known	missense	c.155	p.P52L	0.997	superfamily_P_Acid_Pase_2/haloperoxidase	pfam_P_Acid_Pase_2/haloperoxidase,superfamily_P_Acid_Pase_2/haloperoxidase,smart_P_Acid_Pase_2/haloperoxidase	-	no_errors	PPAP2C	HGNC	ENSG00000141934				124	0	0	84	29	25.6637
MIER2	0	genome.wustl.edu	37	19	313553	313553	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	19	313553	313553	C	T	SNP	MIER2	ENST00000264819	human	ensembl	74_37	-1	known	missense	c.746	p.R249H	0.048	pfscan_ELM2_dom	pfam_ELM2_dom,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_ELM2_dom	-	no_errors	MIER2	HGNC	ENSG00000105556				166	0	0	101	30	22.9008
TSHZ3	0	genome.wustl.edu	37	19	31769144	31769144	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	19	31769144	31769144	C	T	SNP	TSHZ3	ENST00000240587	human	ensembl	74_37	-1	known	missense	c.1555	p.G519R	1.000	NULL	superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	TSHZ3	HGNC	ENSG00000121297				269	0	0	195	77	28.3088
ANKRD27	0	genome.wustl.edu	37	19	33135359	33135359	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	19	33135359	33135359	A	G	SNP	ANKRD27	ENST00000306065	human	ensembl	74_37	-1	known	missense	c.397	p.F133L	0.992	NULL	pfam_Ankyrin_rpt,pfam_VPS9,superfamily_Ankyrin_rpt-contain_dom,smart_VPS9_subgr,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_VPS9,prints_Ankyrin_rpt	-	no_errors	ANKRD27	HGNC	ENSG00000105186				477	3	0.625	357	126	26.087
ZNF302	0	genome.wustl.edu	37	19	35173767	35173767	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	19	35173767	35173767	T	C	SNP	ZNF302	ENST00000423823	human	ensembl	74_37	+1	known	missense	c.95	p.V32A	1.000	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF302	HGNC	ENSG00000089335				118	0	0	93	45	32.6087
GRAMD1A	0	genome.wustl.edu	37	19	35501006	35501006	+	Silent	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	19	35501006	35501006	C	T	SNP	GRAMD1A	ENST00000317991	human	ensembl	74_37	+1	known	silent	c.336	p.C112	0.994	pfam_GRAM,smart_GRAM	pfam_GRAM,smart_GRAM	-	no_errors	GRAMD1A	HGNC	ENSG00000089351				206	0	0	159	50	23.9234
THEG	0	genome.wustl.edu	37	19	362241	362241	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	19	362241	362241	C	T	SNP	THEG	ENST00000342640	human	ensembl	74_37	-1	known	missense	c.1099	p.A367T	0.010	NULL	smart_THEG	-	no_errors	THEG	HGNC	ENSG00000105549				179	0	0	158	20	11.236
ALKBH6	0	genome.wustl.edu	37	19	36501501	36501501	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	19	36501501	36501501	G	A	SNP	ALKBH6	ENST00000378875	human	ensembl	74_37	-1	known	missense	c.505	p.R169W	0.118	pfam_Oxoglu/Fe-dep_dioxygenase	pfam_Oxoglu/Fe-dep_dioxygenase	-	no_errors	ALKBH6	HGNC	ENSG00000239382				111	0	0	81	25	23.5849
ZNF790	0	genome.wustl.edu	37	19	37310989	37310989	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	19	37310989	37310989	T	A	SNP	ZNF790	ENST00000356725	human	ensembl	74_37	-1	known	missense	c.257	p.K86M	0.026	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF790	HGNC	ENSG00000197863				88	0	0	74	14	15.9091
ZNF527	0	genome.wustl.edu	37	19	37879314	37879314	+	Silent	SNP	T	T	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	19	37879314	37879314	T	C	SNP	ZNF527	ENST00000436120	human	ensembl	74_37	+1	known	silent	c.363	p.L121	0.001	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF527	HGNC	ENSG00000189164				59	0	0	43	21	32.8125
RYR1	0	genome.wustl.edu	37	19	39009883	39009883	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	19	39009883	39009883	C	T	SNP	RYR1	ENST00000359596	human	ensembl	74_37	+1	known	missense	c.10048	p.R3350W	0.940	NULL	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ConA-like_lec_gl_sf,superfamily_MG_RAP_rcpt_1,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_MIR_motif	-	no_errors	RYR1	HGNC	ENSG00000196218				178	0	0	117	46	28.2209
RYR1	0	genome.wustl.edu	37	19	39038900	39038900	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	19	39038900	39038900	G	A	SNP	RYR1	ENST00000359596	human	ensembl	74_37	+1	known	missense	c.12122	p.R4041Q	1.000	NULL	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ConA-like_lec_gl_sf,superfamily_MG_RAP_rcpt_1,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_MIR_motif	-	no_errors	RYR1	HGNC	ENSG00000196218				87	0	0	50	22	30.5556
PAPL	0	genome.wustl.edu	37	19	39600757	39600757	+	Nonstop_Mutation	SNP	A	A	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	19	39600757	39600757	A	G	SNP	PAPL	ENST00000331256	human	ensembl	74_37	+1	known	nonstop	c.1316	p.*439W	0.497	NULL	pfam_PEstase_dom,superfamily_Purple_acid_Pase-like_N	-	no_errors	PAPL	Uniprot_gn	ENSG00000183760				188	0	0	142	58	29
SAMD4B	0	genome.wustl.edu	37	19	39870619	39870619	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	19	39870619	39870619	C	T	SNP	SAMD4B	ENST00000314471	human	ensembl	74_37	+1	known	missense	c.1544	p.T515M	0.996	NULL	pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM	-	no_errors	SAMD4B	HGNC	ENSG00000179134				26	0	0	20	9	31.0345
SUPT5H	0	genome.wustl.edu	37	19	39949665	39949665	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	19	39949665	39949665	T	C	SNP	SUPT5H	ENST00000432763	human	ensembl	74_37	+1	known	missense	c.410	p.L137P	1.000	pfam_Spt5_N,pirsf_TF_Spt5	pfam_TF_Spt5_NGN-domain,pfam_KOW,pfam_Spt5_N,superfamily_Translation_prot_SH3-like,smart_Transcrpt_antiterm_NusG_N_dom,smart_KOW,pirsf_TF_Spt5	-	no_errors	SUPT5H	HGNC	ENSG00000196235				163	0	0	121	28	18.7919
PIAS4	0	genome.wustl.edu	37	19	4037403	4037403	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	19	4037403	4037403	G	T	SNP	PIAS4	ENST00000262971	human	ensembl	74_37	+1	known	missense	c.1174	p.D392Y	1.000	NULL	pfam_Znf_MIZ,smart_SAP_dom,pfscan_Znf_MIZ,pfscan_SAP_dom	-	no_errors	PIAS4	HGNC	ENSG00000105229				35	0	0	24	8	25
SHKBP1	0	genome.wustl.edu	37	19	41086254	41086254	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	19	41086254	41086254	G	A	SNP	SHKBP1	ENST00000291842	human	ensembl	74_37	+1	known	missense	c.425	p.R142Q	1.000	NULL	pfam_T1-type_BTB,pfam_WD40_repeat,superfamily_BTB/POZ_fold,superfamily_WD40_repeat_dom,smart_BTB/POZ-like,smart_WD40_repeat,pfscan_BTB/POZ-like	-	no_errors	SHKBP1	HGNC	ENSG00000160410				51	0	0	29	16	35.5556
CYP2B7P1	0	genome.wustl.edu	37	19	41448075	41448075	+	RNA	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	19	41448075	41448075	G	A	SNP	CYP2B7P1	ENST00000599198	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.969	-	-	-	no_errors	CYP2B7P1	HGNC	ENSG00000256612				43	0	0	35	21	37.5
HNRNPUL1	0	genome.wustl.edu	37	19	41808741	41808741	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	19	41808741	41808741	G	A	SNP	HNRNPUL1	ENST00000392006	human	ensembl	74_37	+1	known	missense	c.1859	p.R620H	0.999	NULL	pfam_SPRY_rcpt,pfam_SAP_dom,superfamily_ConA-like_lec_gl_sf,superfamily_P-loop_NTPase,smart_SAP_dom,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_SAP_dom	-	no_errors	HNRNPUL1	HGNC	ENSG00000105323				102	0	0	69	32	31.6832
B9D2	0	genome.wustl.edu	37	19	41860649	41860649	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	19	41860649	41860649	C	T	SNP	B9D2	ENST00000243578	human	ensembl	74_37	-1	known	missense	c.484	p.G162S	0.012	pfam_B9_dom	pfam_B9_dom	-	no_errors	B9D2	HGNC	ENSG00000123810				68	0	0	54	12	18.1818
RABAC1	0	genome.wustl.edu	37	19	42463041	42463041	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	19	42463041	42463041	C	T	SNP	RABAC1	ENST00000222008	human	ensembl	74_37	-1	known	missense	c.116	p.R39H	1.000	pfam_Prenylated_rab_accept_PRA1	pfam_Prenylated_rab_accept_PRA1	-	no_errors	RABAC1	HGNC	ENSG00000105404				11	0	0	5	6	54.5455
TMIGD2	0	genome.wustl.edu	37	19	4292852	4292852	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	19	4292852	4292852	C	T	SNP	TMIGD2	ENST00000301272	human	ensembl	74_37	-1	known	missense	c.593	p.R198Q	0.002	NULL	smart_Ig_sub,pfscan_Ig-like_dom	-	no_errors	TMIGD2	HGNC	ENSG00000167664				112	0	0	81	19	19
ZNF283	0	genome.wustl.edu	37	19	44352263	44352263	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	19	44352263	44352263	C	T	SNP	ZNF283	ENST00000324461	human	ensembl	74_37	+1	known	nonsense	c.1510	p.R504*	0.001	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF283	HGNC	ENSG00000167637				159	0	0	136	34	20
ZNF285	0	genome.wustl.edu	37	19	44891190	44891190	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	19	44891190	44891190	C	T	SNP	ZNF285	ENST00000330997	human	ensembl	74_37	-1	known	missense	c.1217	p.G406D	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF285	HGNC	ENSG00000267508				96	0	0	66	21	24.1379
NKPD1	0	genome.wustl.edu	37	19	45655788	45655788	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	19	45655788	45655788	A	T	SNP	NKPD1	ENST00000317951	human	ensembl	74_37	-1	known	missense	c.1907	p.L636Q	1.000	NULL	pfam_KAP_NTPase	-	no_errors	NKPD1	HGNC	ENSG00000179846				9	0	0	10	6	37.5
VASP	0	genome.wustl.edu	37	19	46020980	46020980	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	19	46020980	46020980	G	A	SNP	VASP	ENST00000245932	human	ensembl	74_37	+1	known	missense	c.65	p.R22Q	0.958	pirsf_Vasodilator_phosphoprotein,pfam_WH1/EVH1,smart_WH1/EVH1,pfscan_WH1/EVH1	pirsf_Vasodilator_phosphoprotein,pfam_WH1/EVH1,pfam_VASP_tetra,smart_WH1/EVH1,pfscan_WH1/EVH1	-	no_errors	VASP	HGNC	ENSG00000125753				67	0	0	49	13	20.9677
EML2	0	genome.wustl.edu	37	19	46117919	46117919	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	19	46117919	46117919	G	A	SNP	EML2	ENST00000587152	human	ensembl	74_37	-1	known	missense	c.2240	p.A747V	0.000	superfamily_Quinoprot_gluc/sorb_DH,pfscan_WD40_repeat_dom	pfam_HELP,pfam_WD40_repeat,superfamily_Quinonprotein_ADH-like_supfam,superfamily_Quinoprot_gluc/sorb_DH,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	EML2	HGNC	ENSG00000125746				273	0	0	161	79	32.9167
EML2	0	genome.wustl.edu	37	19	46141865	46141865	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	19	46141865	46141865	C	T	SNP	EML2	ENST00000587152	human	ensembl	74_37	-1	known	missense	c.680	p.R227K	1.000	pfam_HELP	pfam_HELP,pfam_WD40_repeat,superfamily_Quinonprotein_ADH-like_supfam,superfamily_Quinoprot_gluc/sorb_DH,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	EML2	HGNC	ENSG00000125746				114	1	0.869565	99	31	23.8462
PRKD2	0	genome.wustl.edu	37	19	47178330	47178330	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	19	47178330	47178330	C	T	SNP	PRKD2	ENST00000291281	human	ensembl	74_37	-1	known	missense	c.2384	p.R795H	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pleckstrin_homology,superfamily_Kinase-like_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_dom,prints_DAG/PE-bd	-	no_errors	PRKD2	HGNC	ENSG00000105287				18	0	0	16	6	27.2727
STRN4	0	genome.wustl.edu	37	19	47242087	47242087	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	19	47242087	47242087	A	G	SNP	STRN4	ENST00000391910	human	ensembl	74_37	-1	known	missense	c.341	p.L114P	1.000	pfam_Striatin_N	pfam_WD40_repeat,pfam_Striatin_N,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	STRN4	HGNC	ENSG00000090372				189	1	0.526316	124	18	12.6761
CYTH2	0	genome.wustl.edu	37	19	48977543	48977543	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	19	48977543	48977543	C	T	SNP	CYTH2	ENST00000427476	human	ensembl	74_37	+1	known	missense	c.652	p.R218W	1.000	pfam_Sec7_dom,superfamily_Sec7_dom,smart_Sec7_dom,pfscan_Sec7_dom	pfam_Sec7_dom,pfam_Pleckstrin_homology,superfamily_Sec7_dom,smart_Sec7_dom,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Sec7_dom	-	no_errors	CYTH2	HGNC	ENSG00000105443				150	0	0	109	29	21.0145
UHRF1	0	genome.wustl.edu	37	19	4932942	4932942	+	RNA	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	19	4932942	4932942	G	A	SNP	UHRF1	ENST00000262952	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.876	-	-	-	no_errors	UHRF1	HGNC	ENSG00000034063				31	0	0	27	4	12.9032
NUCB1	0	genome.wustl.edu	37	19	49409126	49409126	+	Silent	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	19	49409126	49409126	C	T	SNP	NUCB1	ENST00000263273	human	ensembl	74_37	+1	known	silent	c.360	p.D120	0.998	NULL	pfscan_EF_hand_dom	-	no_errors	NUCB1	HGNC	ENSG00000104805				49	0	0	32	15	31.9149
UHRF1	0	genome.wustl.edu	37	19	4950920	4950920	+	RNA	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	19	4950920	4950920	G	A	SNP	UHRF1	ENST00000262952	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	UHRF1	HGNC	ENSG00000034063				70	0	0	49	14	22.2222
HRC	0	genome.wustl.edu	37	19	49657745	49657745	+	Silent	SNP	A	A	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	19	49657745	49657745	A	G	SNP	HRC	ENST00000252825	human	ensembl	74_37	-1	known	silent	c.750	p.D250	0.723	pfam_Hist_rich_Ca-bd	pfam_Hist_rich_Ca-bd	-	no_errors	HRC	HGNC	ENSG00000130528				40	0	0	32	4	11.1111
TSKS	0	genome.wustl.edu	37	19	50266380	50266380	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	19	50266380	50266380	C	T	SNP	TSKS	ENST00000246801	human	ensembl	74_37	-1	known	missense	c.125	p.R42Q	0.551	NULL	NULL	-	no_errors	TSKS	HGNC	ENSG00000126467				188	0	0	121	49	28.8235
SIGLEC11	0	genome.wustl.edu	37	19	50455204	50455204	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	19	50455204	50455204	G	A	SNP	SIGLEC11	ENST00000447370	human	ensembl	74_37	-1	known	missense	c.1774	p.R592C	0.000	NULL	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,pfam_CD80_C2-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	SIGLEC11	HGNC	ENSG00000161640				29	0	0	25	7	21.875
IZUMO2	0	genome.wustl.edu	37	19	50666247	50666247	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	19	50666247	50666247	C	T	SNP	IZUMO2	ENST00000293405	human	ensembl	74_37	-1	known	missense	c.205	p.A69T	0.906	NULL	NULL	-	no_errors	IZUMO2	HGNC	ENSG00000161652				59	0	0	41	12	22.6415
ETFB	0	genome.wustl.edu	37	19	51848577	51848577	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	19	51848577	51848577	G	A	SNP	ETFB	ENST00000354232	human	ensembl	74_37	-1	known	missense	c.929	p.T310I	1.000	NULL	pfam_ETF_a/b_N,smart_ETF_a/b_N	-	no_errors	ETFB	HGNC	ENSG00000105379				97	0	0	67	19	22.093
ZNF480	0	genome.wustl.edu	37	19	52825530	52825530	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	19	52825530	52825530	T	C	SNP	ZNF480	ENST00000468240	human	ensembl	74_37	+1	known	missense	c.1027	p.Y343H	0.016	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF480	HGNC	ENSG00000198464				100	0	0	95	6	5.94059
ZNF468	0	genome.wustl.edu	37	19	53344411	53344411	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	19	53344411	53344411	C	A	SNP	ZNF468	ENST00000595646	human	ensembl	74_37	-1	known	missense	c.1136	p.G379V	0.993	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF468	HGNC	ENSG00000204604				222	0	0	167	54	24.4344
ZNF347	0	genome.wustl.edu	37	19	53644898	53644898	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	19	53644898	53644898	G	T	SNP	ZNF347	ENST00000452676	human	ensembl	74_37	-1	known	missense	c.1186	p.H396N	0.995	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF347	HGNC	ENSG00000197937				154	0	0	121	43	26.2195
ZNF677	0	genome.wustl.edu	37	19	53740463	53740463	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	19	53740463	53740463	T	A	SNP	ZNF677	ENST00000333952	human	ensembl	74_37	-1	known	missense	c.1517	p.K506M	0.587	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF677	HGNC	ENSG00000197928				121	0	0	90	19	17.4312
ZNF813	0	genome.wustl.edu	37	19	53994944	53994944	+	Silent	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	19	53994944	53994944	G	A	SNP	ZNF813	ENST00000396403	human	ensembl	74_37	+1	known	silent	c.1458	p.T486	0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF813	HGNC	ENSG00000198346				102	0	0	85	7	7.6087
NLRP12	0	genome.wustl.edu	37	19	54297342	54297342	+	Silent	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	19	54297342	54297342	C	T	SNP	NLRP12	ENST00000324134	human	ensembl	74_37	-1	known	silent	c.3147	p.A1049	0.000	NULL	pfam_DAPIN,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP12	HGNC	ENSG00000142405				103	0	0	64	23	26.4368
CACNG7	0	genome.wustl.edu	37	19	54416138	54416138	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	19	54416138	54416138	C	T	SNP	CACNG7	ENST00000222212	human	ensembl	74_37	+1	known	missense	c.53	p.A18V	1.000	pfam_PMP22/EMP/MP20/Claudin,prints_VDCC_gsu	pfam_PMP22/EMP/MP20/Claudin,prints_VDCC_g7su,prints_VDCC_gsu	-	no_errors	CACNG7	HGNC	ENSG00000105605				70	0	0	43	14	24.5614
ZNRF4	0	genome.wustl.edu	37	19	5455507	5455507	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	19	5455507	5455507	C	T	SNP	ZNRF4	ENST00000222033	human	ensembl	74_37	+1	known	missense	c.5	p.P2L	0.000	NULL	pfam_Protease-assoc_domain,pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	ZNRF4	HGNC	ENSG00000105428				38	0	0	33	10	23.2558
PRPF31	0	genome.wustl.edu	37	19	54626916	54626916	+	Silent	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	19	54626916	54626916	C	T	SNP	PRPF31	ENST00000321030	human	ensembl	74_37	+1	known	silent	c.504	p.S168	0.995	NULL	pfam_Nop_dom,pfam_Prp31_C,pfam_NOSIC,smart_NOSIC	-	no_errors	PRPF31	HGNC	ENSG00000105618				150	0	0	100	23	18.6992
CNOT3	0	genome.wustl.edu	37	19	54649502	54649502	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	19	54649502	54649502	G	A	SNP	CNOT3	ENST00000221232	human	ensembl	74_37	+1	known	missense	c.652	p.D218N	1.000	pfam_Not_N,pirsf_CCR4-NOT_su3/5	pfam_Not_N,pfam_NOT,pirsf_CCR4-NOT_su3/5	-	no_errors	CNOT3	HGNC	ENSG00000088038				68	0	0	46	19	29.2308
TMC4	0	genome.wustl.edu	37	19	54667385	54667385	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	19	54667385	54667385	C	A	SNP	TMC4	ENST00000416963	human	ensembl	74_37	-1	known	missense	c.41	p.R14M	0.000	NULL	pfam_TMC	-	no_errors	TMC4	HGNC	ENSG00000167608				69	0	0	51	17	25
LENG8	0	genome.wustl.edu	37	19	54967522	54967522	+	Silent	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	19	54967522	54967522	C	T	SNP	LENG8	ENST00000326764	human	ensembl	74_37	+1	known	silent	c.1323	p.S441	0.276	NULL	pfam_SAC3/GANP/Nin1/mts3/eIF-3-p25	-	no_errors	LENG8	HGNC	ENSG00000167615				182	0	0	101	31	23.4848
KIR2DL3	0	genome.wustl.edu	37	19	55263953	55263953	+	Silent	SNP	T	T	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	19	55263953	55263953	T	C	SNP	KIR2DL3	ENST00000342376	human	ensembl	74_37	+1	known	silent	c.1008	p.L336	0.000	NULL	pfam_Immunoglobulin,smart_Ig_sub	-	no_errors	KIR2DL3	HGNC	ENSG00000243772				175	0	0	159	19	10.6742
SYT5	0	genome.wustl.edu	37	19	55687082	55687082	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	19	55687082	55687082	A	G	SNP	SYT5	ENST00000354308	human	ensembl	74_37	-1	known	missense	c.535	p.F179L	1.000	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom,prints_C2_dom	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom,prints_Synaptotagmin,prints_C2_dom	-	no_errors	SYT5	HGNC	ENSG00000129990				105	0	0	88	12	12
TMEM150B	0	genome.wustl.edu	37	19	55828178	55828178	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	19	55828178	55828178	C	T	SNP	TMEM150B	ENST00000326652	human	ensembl	74_37	-1	known	missense	c.481	p.V161I	0.019	pfam_Frag1/DRAM/Sfk1	pfam_Frag1/DRAM/Sfk1	-	no_errors	TMEM150B	HGNC	ENSG00000180061				13	0	0	17	6	26.087
ZNF628	0	genome.wustl.edu	37	19	55994442	55994442	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	19	55994442	55994442	G	A	SNP	ZNF628	ENST00000598519	human	ensembl	74_37	+1	known	missense	c.1882	p.G628S	0.999	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF628	HGNC	ENSG00000197483				27	0	0	20	8	28.5714
ZNF628	0	genome.wustl.edu	37	19	55994860	55994860	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	19	55994860	55994860	C	T	SNP	ZNF628	ENST00000598519	human	ensembl	74_37	+1	known	missense	c.2300	p.A767V	0.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF628	HGNC	ENSG00000197483				9	0	0	7	4	36.3636
NLRP11	0	genome.wustl.edu	37	19	56321607	56321607	+	Silent	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	19	56321607	56321607	G	A	SNP	NLRP11	ENST00000443188	human	ensembl	74_37	-1	known	silent	c.369	p.D123	0.000	NULL	pfam_DAPIN,superfamily_DEATH-like_dom,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP11	HGNC	ENSG00000179873				79	0	0	55	18	24.6575
NLRP4	0	genome.wustl.edu	37	19	56369846	56369846	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	19	56369846	56369846	C	A	SNP	NLRP4	ENST00000301295	human	ensembl	74_37	+1	known	missense	c.1087	p.L363M	0.000	NULL	pfam_DAPIN,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP4	HGNC	ENSG00000160505				77	0	0	61	18	22.7848
ZSCAN5A	0	genome.wustl.edu	37	19	56736058	56736058	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	19	56736058	56736058	G	A	SNP	ZSCAN5A	ENST00000391713	human	ensembl	74_37	-1	known	nonsense	c.358	p.R120*	0.001	pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,pfscan_Tscrpt_reg_SCAN	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZSCAN5A	HGNC	ENSG00000131848				70	0	0	53	17	24.2857
LONP1	0	genome.wustl.edu	37	19	5699204	5699204	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	19	5699204	5699204	C	T	SNP	LONP1	ENST00000360614	human	ensembl	74_37	-1	known	missense	c.1519	p.V507I	0.980	pfam_DNA_helicase_Holl-junc_RuvB_N,pfam_Prk_AAA_dom,superfamily_P-loop_NTPase,tigrfam_Lon_bac/euk-typ	pfam_Pept_S16_C,pfam_Pept_S16_N,pfam_ATPase_AAA_core,pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA-2,pfam_DNA_helicase_Holl-junc_RuvB_N,pfam_Prk_AAA_dom,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_P-loop_NTPase,superfamily_PUA-like_domain,smart_Pept_S16_N,smart_AAA+_ATPase,tigrfam_Lon_bac/euk-typ	-	no_errors	LONP1	HGNC	ENSG00000196365				75	0	0	42	30	41.6667
ZNF71	0	genome.wustl.edu	37	19	57133348	57133348	+	Silent	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	19	57133348	57133348	G	A	SNP	ZNF71	ENST00000328070	human	ensembl	74_37	+1	known	silent	c.693	p.Q231	0.577	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF71	HGNC	ENSG00000197951				65	0	0	38	17	30.9091
BSG	0	genome.wustl.edu	37	19	580705	580705	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	19	580705	580705	A	G	SNP	BSG	ENST00000333511	human	ensembl	74_37	+1	known	missense	c.715	p.M239V	0.001	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	BSG	HGNC	ENSG00000172270				54	0	0	58	6	9.375
ZNF530	0	genome.wustl.edu	37	19	58117151	58117151	+	Silent	SNP	C	C	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	19	58117151	58117151	C	A	SNP	ZNF530	ENST00000332854	human	ensembl	74_37	+1	known	silent	c.258	p.S86	0.012	pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF530	HGNC	ENSG00000183647				107	1	0.925926	79	32	28.8288
ZNF551	0	genome.wustl.edu	37	19	58198191	58198191	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	19	58198191	58198191	G	A	SNP	ZNF551	ENST00000282296	human	ensembl	74_37	+1	known	missense	c.548	p.C183Y	0.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF551	HGNC	ENSG00000204519				104	0	0	59	24	28.9157
ZNF587	0	genome.wustl.edu	37	19	58370966	58370966	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	19	58370966	58370966	G	A	SNP	ZNF587	ENST00000339656	human	ensembl	74_37	+1	known	missense	c.1186	p.V396I	0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF587	HGNC	ENSG00000198466				288	2	0.689655	199	64	24.3346
ENSG00000270804	0	genome.wustl.edu	37	19	58379690	58379690	+	RNA	SNP	A	A	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	19	58379690	58379690	A	C	SNP	ENSG00000270804	ENST00000604665	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	CTD-2583A14.11	Clone_based_vega_gene	ENSG00000270804				42	0	0	22	11	33.3333
ZNF132	0	genome.wustl.edu	37	19	58945384	58945384	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	19	58945384	58945384	C	T	SNP	ZNF132	ENST00000254166	human	ensembl	74_37	-1	known	missense	c.1427	p.R476Q	0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF132	HGNC	ENSG00000131849				98	0	0	64	23	26.4368
MLLT1	0	genome.wustl.edu	37	19	6213094	6213094	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	19	6213094	6213094	C	T	SNP	MLLT1	ENST00000252674	human	ensembl	74_37	-1	known	missense	c.1639	p.V547M	1.000	NULL	pfam_YEATS,pfscan_YEATS	-	no_errors	MLLT1	HGNC	ENSG00000130382				103	0	0	70	20	22.2222
FCER2	0	genome.wustl.edu	37	19	7754113	7754113	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	19	7754113	7754113	C	T	SNP	FCER2	ENST00000346664	human	ensembl	74_37	-1	known	missense	c.932	p.R311H	0.000	NULL	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,prints_AntifreezeII,pfscan_C-type_lectin	-	no_errors	FCER2	HGNC	ENSG00000104921				37	0	0	29	13	30.9524
EVI5L	0	genome.wustl.edu	37	19	7914211	7914211	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	19	7914211	7914211	A	G	SNP	EVI5L	ENST00000538904	human	ensembl	74_37	+1	known	missense	c.622	p.M208V	1.000	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	EVI5L	HGNC	ENSG00000142459				70	0	0	40	10	20
LPPR3	0	genome.wustl.edu	37	19	814902	814902	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	19	814902	814902	C	T	SNP	LPPR3	ENST00000359894	human	ensembl	74_37	-1	known	missense	c.583	p.A195T	1.000	pfam_P_Acid_Pase_2/haloperoxidase,superfamily_P_Acid_Pase_2/haloperoxidase,smart_P_Acid_Pase_2/haloperoxidase	pfam_P_Acid_Pase_2/haloperoxidase,superfamily_P_Acid_Pase_2/haloperoxidase,smart_P_Acid_Pase_2/haloperoxidase	-	no_errors	LPPR3	Uniprot_gn	ENSG00000129951				58	0	0	41	11	21.1538
FBN3	0	genome.wustl.edu	37	19	8190851	8190851	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	19	8190851	8190851	C	T	SNP	FBN3	ENST00000270509	human	ensembl	74_37	-1	known	missense	c.2656	p.V886I	0.977	pfam_EGF-like_Ca-bd_dom,superfamily_TB_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pirsf_FBN,pfscan_EG-like_dom	pfam_EGF-like_Ca-bd_dom,pfam_TB_dom,pfam_EG-like_dom,superfamily_TB_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pirsf_FBN,pfscan_EG-like_dom	-	no_errors	FBN3	HGNC	ENSG00000142449				58	0	0	59	15	20.2703
CERS4	0	genome.wustl.edu	37	19	8321559	8321559	+	Silent	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	19	8321559	8321559	C	T	SNP	CERS4	ENST00000251363	human	ensembl	74_37	+1	known	silent	c.577	p.L193	0.996	pfam_TLC-dom,smart_TLC-dom,pirsf_Longevity_assurance_LAG1_LAC1,pfscan_TLC-dom	pfam_TLC-dom,pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_TLC-dom,pirsf_Longevity_assurance_LAG1_LAC1,pfscan_TLC-dom,pfscan_Homeobox_dom	-	no_errors	CERS4	HGNC	ENSG00000090661				138	0	0	98	32	24.6154
ACTL9	0	genome.wustl.edu	37	19	8808899	8808899	+	Silent	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	19	8808899	8808899	C	T	SNP	ACTL9	ENST00000324436	human	ensembl	74_37	-1	known	silent	c.153	p.V51	0.002	pfam_Actin-related,smart_Actin-related	pfam_Actin-related,smart_Actin-related,prints_Actin-related	-	no_errors	ACTL9	HGNC	ENSG00000181786				125	0	0	88	20	18.5185
MUC16	0	genome.wustl.edu	37	19	9049228	9049228	+	Silent	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	19	9049228	9049228	C	T	SNP	MUC16	ENST00000397910	human	ensembl	74_37	-1	known	silent	c.32403	p.A10801	0.000	NULL	pfam_SEA_dom,smart_SEA_dom,pfscan_SEA_dom	-	no_errors	MUC16	HGNC	ENSG00000181143				167	0	0	102	44	30.137
OR7D4	0	genome.wustl.edu	37	19	9324694	9324694	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	19	9324694	9324694	C	T	SNP	OR7D4	ENST00000308682	human	ensembl	74_37	-1	known	missense	c.820	p.A274T	0.048	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR7D4	HGNC	ENSG00000174667				105	0	0	68	27	28.4211
ZNF559	0	genome.wustl.edu	37	19	9453697	9453697	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	19	9453697	9453697	T	G	SNP	ZNF559	ENST00000393883	human	ensembl	74_37	+1	known	missense	c.1570	p.C524G	0.987	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF559	HGNC	ENSG00000188321				160	0	0	162	11	6.35838
NPAS2	0	genome.wustl.edu	37	2	101591353	101591353	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	2	101591353	101591353	C	T	SNP	NPAS2	ENST00000542504	human	ensembl	74_37	+1	known	missense	c.1424	p.A475V	0.026	NULL	pfam_PAS_fold_3,pfam_PAS_fold,pfam_bHLH_dom,superfamily_PAS,superfamily_bHLH_dom,smart_bHLH_dom,smart_PAS,smart_PAC,prints_Nuc_translocat,pfscan_PAS,pfscan_bHLH_dom,tigrfam_PAS	-	no_errors	NPAS2	HGNC	ENSG00000170485				68	0	0	62	18	22.5
MRPS9	0	genome.wustl.edu	37	2	105709992	105709992	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	2	105709992	105709992	A	C	SNP	MRPS9	ENST00000258455	human	ensembl	74_37	+1	known	missense	c.825	p.K275N	0.821	pfam_Ribosomal_S9,superfamily_Ribosomal_S5_D2-typ_fold	pfam_Ribosomal_S9,superfamily_Ribosomal_S5_D2-typ_fold	-	no_errors	MRPS9	HGNC	ENSG00000135972				86	0	0	74	6	7.5
ATP6V1C2	0	genome.wustl.edu	37	2	10923322	10923322	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	2	10923322	10923322	T	C	SNP	ATP6V1C2	ENST00000272238	human	ensembl	74_37	+1	known	missense	c.1217	p.L406P	0.996	pfam_ATPase_V1-cplx_csu	pfam_ATPase_V1-cplx_csu	-	no_errors	ATP6V1C2	HGNC	ENSG00000143882				105	0	0	131	7	5.07246
SNTG2	0	genome.wustl.edu	37	2	1094066	1094066	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	2	1094066	1094066	G	A	SNP	SNTG2	ENST00000308624	human	ensembl	74_37	+1	known	missense	c.295	p.V99I	1.000	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	SNTG2	HGNC	ENSG00000172554				115	0	0	67	27	28.7234
LOC440895	0	genome.wustl.edu	37	2	110742135	110742135	+	RNA	SNP	T	T	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	2	110742135	110742135	T	C	SNP	LOC440895	ENST00000454928	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.700	-	-	-	no_errors	AC013271.3	Clone_based_vega_gene	ENSG00000186148				37	0	0	18	7	28
MALL	0	genome.wustl.edu	37	2	110849314	110849314	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	2	110849314	110849314	C	T	SNP	MALL	ENST00000272462	human	ensembl	74_37	-1	known	missense	c.139	p.A47T	0.952	pfam_Marvel,prints_MAL	pfam_Marvel,prints_MAL	-	no_errors	MALL	HGNC	ENSG00000144063				107	0	0	80	10	11.1111
IL1F10	0	genome.wustl.edu	37	2	113831989	113831989	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	2	113831989	113831989	C	T	SNP	IL1F10	ENST00000341010	human	ensembl	74_37	+1	known	missense	c.116	p.A39V	0.883	pfam_IL-1,superfamily_Cytokine_IL1-like,smart_IL-1	pfam_IL-1,superfamily_Cytokine_IL1-like,smart_IL-1,prints_IL-1RA/IL-36,prints_IL-1,prints_IL-1_beta	-	no_errors	IL1F10	HGNC	ENSG00000136697				32	0	0	22	8	26.6667
STEAP3	0	genome.wustl.edu	37	2	120012379	120012379	+	Silent	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	2	120012379	120012379	G	A	SNP	STEAP3	ENST00000393110	human	ensembl	74_37	+1	known	silent	c.1170	p.P390	0.011	pfam_Fe3_Rdtase_TM_dom	pfam_Fe3_Rdtase_TM_dom	-	no_errors	STEAP3	HGNC	ENSG00000115107				55	0	0	39	11	22
WDR33	0	genome.wustl.edu	37	2	128480887	128480887	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	2	128480887	128480887	T	C	SNP	WDR33	ENST00000322313	human	ensembl	74_37	-1	known	missense	c.1231	p.M411V	1.000	pfscan_WD40_repeat_dom	pfam_WD40_repeat,pfam_Collagen,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR33	HGNC	ENSG00000136709				180	0	0	203	16	7.30594
SAP130	0	genome.wustl.edu	37	2	128707456	128707456	+	Silent	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	2	128707456	128707456	G	A	SNP	SAP130	ENST00000357702	human	ensembl	74_37	-1	known	silent	c.2862	p.D954	0.991	NULL	NULL	-	no_errors	SAP130	HGNC	ENSG00000136715				68	0	0	56	18	24.3243
SAP130	0	genome.wustl.edu	37	2	128707900	128707900	+	Silent	SNP	T	T	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	2	128707900	128707900	T	C	SNP	SAP130	ENST00000357702	human	ensembl	74_37	-1	known	silent	c.2583	p.L861	0.449	NULL	NULL	-	no_errors	SAP130	HGNC	ENSG00000136715				185	0	0	148	29	16.3842
POTEI	0	genome.wustl.edu	37	2	131221154	131221154	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	2	131221154	131221154	C	A	SNP	POTEI	ENST00000451531	human	ensembl	74_37	-1	novel	missense	c.2463	p.Q821H	1.000	pfam_Actin-related,smart_Actin-related,prints_Actin-related	pfam_Actin-related,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Actin-related,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Actin-related	-	no_errors	POTEI	HGNC	ENSG00000196834				45	0	0	40	13	24.5283
CCDC74A	0	genome.wustl.edu	37	2	132285715	132285715	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	2	132285715	132285715	C	T	SNP	CCDC74A	ENST00000295171	human	ensembl	74_37	+1	known	nonsense	c.172	p.Q58*	1.000	NULL	NULL	-	no_errors	CCDC74A	HGNC	ENSG00000163040				56	0	0	36	23	38.9831
NCKAP5	0	genome.wustl.edu	37	2	133531439	133531439	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	2	133531439	133531439	T	A	SNP	NCKAP5	ENST00000317721	human	ensembl	74_37	-1	known	missense	c.5078	p.E1693V	1.000	NULL	NULL	-	no_errors	NCKAP5	HGNC	ENSG00000176771				150	0	0	95	33	25.7812
R3HDM1	0	genome.wustl.edu	37	2	136393667	136393667	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	2	136393667	136393667	C	T	SNP	R3HDM1	ENST00000264160	human	ensembl	74_37	+1	known	missense	c.817	p.R273C	1.000	NULL	pfam_R3H_ss-bd,smart_R3H_ss-bd,pfscan_R3H_ss-bd	-	no_errors	R3HDM1	HGNC	ENSG00000048991				99	0	0	64	28	30.4348
THSD7B	0	genome.wustl.edu	37	2	138378192	138378192	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	2	138378192	138378192	A	C	SNP	THSD7B	ENST00000272643	human	ensembl	74_37	+1	known	missense	c.3704	p.K1235T	0.999	superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	-	no_errors	THSD7B	HGNC	ENSG00000144229				170	0	0	116	55	32.1637
ZEB2	0	genome.wustl.edu	37	2	145157490	145157490	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	2	145157490	145157490	C	T	SNP	ZEB2	ENST00000303660	human	ensembl	74_37	-1	known	missense	c.1264	p.A422T	1.000	NULL	superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	ZEB2	HGNC	ENSG00000169554				84	0	0	73	20	21.5054
LYPD6B	0	genome.wustl.edu	37	2	150071412	150071412	+	RNA	SNP	A	A	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	2	150071412	150071412	A	G	SNP	LYPD6B	ENST00000498249	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	LYPD6B	HGNC	ENSG00000150556				10	0	0	7	3	30
NEB	0	genome.wustl.edu	37	2	152410392	152410392	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	2	152410392	152410392	C	T	SNP	NEB	ENST00000397345	human	ensembl	74_37	-1	known	missense	c.19576	p.D6526N	1.000	smart_Nebulin_35r-motif	pfam_Nebulin_35r-motif,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,superfamily_Adhesion_dom,superfamily_6-PGluconate_DH_C-like,smart_Nebulin_35r-motif,smart_SH3_domain,pfscan_Nebulin_35r-motif,pfscan_SH3_domain,prints_Nebulin	-	no_errors	NEB	HGNC	ENSG00000183091				98	0	0	72	16	18.1818
NR4A2	0	genome.wustl.edu	37	2	157182788	157182788	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	2	157182788	157182788	T	A	SNP	NR4A2	ENST00000539077	human	ensembl	74_37	-1	known	missense	c.1447	p.R483W	1.000	pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Nucl_hrmn_rcpt_lig-bd_core,prints_Nuc_orph_rcpt,prints_Retinoic_acid_rcpt	pfam_Znf_hrmn_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_NURR_rcpt,prints_Nuc_orph_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,prints_Retinoic_acid_rcpt	-	no_errors	NR4A2	HGNC	ENSG00000153234				83	0	0	106	7	6.19469
GALNT5	0	genome.wustl.edu	37	2	158115241	158115241	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	2	158115241	158115241	T	C	SNP	GALNT5	ENST00000259056	human	ensembl	74_37	+1	known	missense	c.647	p.L216S	0.000	NULL	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	GALNT5	HGNC	ENSG00000136542				86	0	0	74	12	13.9535
TANC1	0	genome.wustl.edu	37	2	160086950	160086950	+	Silent	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	2	160086950	160086950	C	T	SNP	TANC1	ENST00000263635	human	ensembl	74_37	+1	known	silent	c.5013	p.S1671	1.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,superfamily_P-loop_NTPase,smart_Ankyrin_rpt,smart_TPR_repeat,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_TPR_repeat,pfscan_TPR-contain_dom,prints_Ankyrin_rpt	-	no_errors	TANC1	HGNC	ENSG00000115183				166	0	0	121	38	23.8994
ENSG00000223642	0	genome.wustl.edu	37	2	160252270	160252270	+	RNA	SNP	A	A	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	2	160252270	160252270	A	G	SNP	ENSG00000223642	ENST00000594921	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.003	-	-	-	no_errors	AC008277.1	Clone_based_vega_gene	ENSG00000223642				40	0	0	24	12	33.3333
SLC4A10	0	genome.wustl.edu	37	2	162719492	162719492	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	2	162719492	162719492	T	G	SNP	SLC4A10	ENST00000446997	human	ensembl	74_37	+1	known	missense	c.686	p.L229R	1.000	pfam_Band3_cytoplasmic_dom,superfamily_PTrfase/Anion_transptr,tigrfam_HCO3_transpt_euk	pfam_HCO3_transpt_C,pfam_Band3_cytoplasmic_dom,superfamily_PTrfase/Anion_transptr,prints_HCO3_transpt_euk,prints_Na/HCO3_transpt,tigrfam_HCO3_transpt_euk	-	no_errors	SLC4A10	HGNC	ENSG00000144290				56	0	0	28	14	33.3333
PXDN	0	genome.wustl.edu	37	2	1653372	1653372	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	2	1653372	1653372	C	T	SNP	PXDN	ENST00000252804	human	ensembl	74_37	-1	known	missense	c.2180	p.R727Q	1.000	NULL	pfam_Haem_peroxidase_animal,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_VWF_C,pfam_Leu-rich_rpt,superfamily_Haem_peroxidase,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,smart_VWF_C,prints_Haem_peroxidase_animal_subgr,pfscan_VWF_C,pfscan_Haem_peroxidase_animal,pfscan_Ig-like_dom	-	no_errors	PXDN	HGNC	ENSG00000130508				117	0	0	67	28	29.4737
SCN3A	0	genome.wustl.edu	37	2	165984367	165984367	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	2	165984367	165984367	T	C	SNP	SCN3A	ENST00000283254	human	ensembl	74_37	-1	known	missense	c.3167	p.E1056G	1.000	pfam_Na_trans_assoc	pfam_Ion_trans_dom,pfam_DUF3451,pfam_Na_trans_assoc,pfam_PKD1_2_channel,pfscan_IQ_motif_EF-hand-BS,prints_Na_channel_asu,prints_PKD_2	-	no_errors	SCN3A	HGNC	ENSG00000153253				132	0	0	84	30	26.3158
XIRP2	0	genome.wustl.edu	37	2	168100923	168100923	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	2	168100923	168100923	A	C	SNP	XIRP2	ENST00000295237	human	ensembl	74_37	+1	known	missense	c.3021	p.E1007D	0.999	NULL	pfam_Actin-binding_Xin_repeat	-	no_errors	XIRP2	HGNC	ENSG00000163092				105	0	0	64	29	31.1828
GORASP2	0	genome.wustl.edu	37	2	171806085	171806085	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	2	171806085	171806085	G	A	SNP	GORASP2	ENST00000452526	human	ensembl	74_37	+1	known	missense	c.217	p.A73T	1.000	pfam_GRASP55/65_PDZ,superfamily_PDZ	pfam_GRASP55/65_PDZ,superfamily_PDZ	-	no_errors	GORASP2	HGNC	ENSG00000115806				109	0	0	85	26	23.4234
CHRNA1	0	genome.wustl.edu	37	2	175613330	175613330	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	2	175613330	175613330	T	G	SNP	CHRNA1	ENST00000261007	human	ensembl	74_37	-1	known	missense	c.1295	p.K432T	1.000	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM	pfam_Neurotrans-gated_channel_TM,pfam_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,prints_Nicotinic_acetylcholine_rcpt,prints_Neur_channel	-	no_errors	CHRNA1	HGNC	ENSG00000138435				101	0	0	77	19	19.7917
HOXD13	0	genome.wustl.edu	37	2	176957879	176957879	+	Silent	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	2	176957879	176957879	G	A	SNP	HOXD13	ENST00000392539	human	ensembl	74_37	+1	putative	silent	c.261	p.S87	0.894	pfam_HoxA13_N	pfam_Homeobox_dom,pfam_HoxA13_N,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	-	no_errors	HOXD13	HGNC	ENSG00000128714				33	0	0	20	7	25.9259
RAD51AP2	0	genome.wustl.edu	37	2	17697058	17697058	+	Silent	SNP	T	T	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	2	17697058	17697058	T	C	SNP	RAD51AP2	ENST00000399080	human	ensembl	74_37	-1	known	silent	c.2625	p.S875	0.141	NULL	NULL	-	no_errors	RAD51AP2	HGNC	ENSG00000214842				32	0	0	28	4	12.5
TTC30B	0	genome.wustl.edu	37	2	178415909	178415909	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	2	178415909	178415909	T	C	SNP	TTC30B	ENST00000408939	human	ensembl	74_37	-1	known	missense	c.1583	p.E528G	1.000	NULL	smart_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC30B	HGNC	ENSG00000196659				467	1	0.213675	343	121	26.0776
RBM45	0	genome.wustl.edu	37	2	178985972	178985972	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	2	178985972	178985972	C	T	SNP	RBM45	ENST00000286070	human	ensembl	74_37	+1	known	missense	c.739	p.R247C	1.000	smart_RRM_dom	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBM45	HGNC	ENSG00000155636				75	0	0	50	19	27.5362
TTN	0	genome.wustl.edu	37	2	179396497	179396497	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	2	179396497	179396497	G	A	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.97141	p.R32381C	1.000	pfam_Ig_I-set,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				97	0	0	92	34	26.9841
TTN	0	genome.wustl.edu	37	2	179436451	179436451	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	2	179436451	179436451	A	C	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.66704	p.V22235G	0.944	pfam_Ig_I-set,superfamily_Calpain_domain_III,superfamily_Fibronectin_type3,superfamily_RNaseH-like_dom,smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				152	1	0.653595	92	39	29.771
TTN	0	genome.wustl.edu	37	2	179484765	179484765	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	2	179484765	179484765	T	C	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.38675	p.Y12892C	1.000	pfam_Ig_I-set,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				100	0	0	74	28	27.451
TTN-AS1	0	genome.wustl.edu	37	2	179629088	179629088	+	RNA	SNP	G	G	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	2	179629088	179629088	G	T	SNP	TTN-AS1	ENST00000578746	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	TTN-AS1	HGNC	ENSG00000237298				55	0	0	27	15	35.7143
TTN	0	genome.wustl.edu	37	2	179640650	179640650	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	2	179640650	179640650	T	C	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.5941	p.R1981G	1.000	superfamily_RNaseH-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				308	0	0	265	94	26.1838
DNAJC10	0	genome.wustl.edu	37	2	183601076	183601076	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	2	183601076	183601076	G	C	SNP	DNAJC10	ENST00000264065	human	ensembl	74_37	+1	known	missense	c.950	p.G317A	1.000	superfamily_Thioredoxin-like_fold,pirsf_DnaJ_homolog_subfam-C	pfam_Thioredoxin_domain,pfam_DnaJ_domain,superfamily_Thioredoxin-like_fold,superfamily_DnaJ_domain,smart_DnaJ_domain,pirsf_DnaJ_homolog_subfam-C,pfscan_DnaJ_domain,prints_DnaJ_domain,prints_Thioredoxin	-	no_errors	DNAJC10	HGNC	ENSG00000077232				72	0	0	51	18	26.087
GLS	0	genome.wustl.edu	37	2	191819482	191819482	+	Silent	SNP	T	T	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	2	191819482	191819482	T	C	SNP	GLS	ENST00000320717	human	ensembl	74_37	+1	known	silent	c.1791	p.G597	1.000	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Glutaminase,pfam_Ankyrin_rpt,superfamily_Beta-lactam/transpept-like,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,tigrfam_Glutaminase	-	no_errors	GLS	HGNC	ENSG00000115419				138	0	0	138	9	6.12245
ANKRD44	0	genome.wustl.edu	37	2	197990131	197990131	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	2	197990131	197990131	C	T	SNP	ANKRD44	ENST00000328737	human	ensembl	74_37	-1	known	missense	c.449	p.R150H	1.000	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	ANKRD44	HGNC	ENSG00000065413				92	0	0	74	26	26
SGOL2	0	genome.wustl.edu	37	2	201438699	201438699	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	2	201438699	201438699	A	G	SNP	SGOL2	ENST00000357799	human	ensembl	74_37	+1	known	missense	c.3630	p.I1210M	0.878	NULL	NULL	-	no_errors	SGOL2	HGNC	ENSG00000163535				78	0	0	77	24	23.7624
NRP2	0	genome.wustl.edu	37	2	206592625	206592625	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	2	206592625	206592625	G	A	SNP	NRP2	ENST00000360409	human	ensembl	74_37	+1	known	missense	c.1001	p.R334H	0.985	pirsf_Neuropilin,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,smart_Coagulation_fac_5/8-C_type_dom,pfscan_Coagulation_fac_5/8-C_type_dom	pirsf_Neuropilin,pfam_CUB_dom,pfam_Coagulation_fac_5/8-C_type_dom,pfam_MAM_dom,pfam_Neuropilin1_C,superfamily_Galactose-bd-like,superfamily_CUB_dom,superfamily_ConA-like_lec_gl_sf,smart_CUB_dom,smart_Coagulation_fac_5/8-C_type_dom,smart_MAM_dom,prints_MAM_dom,pfscan_CUB_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_MAM_dom	-	no_errors	NRP2	HGNC	ENSG00000118257				22	0	0	20	5	20
C2orf80	0	genome.wustl.edu	37	2	209049730	209049730	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	2	209049730	209049730	C	T	SNP	C2orf80	ENST00000341287	human	ensembl	74_37	-1	known	missense	c.68	p.R23Q	1.000	NULL	NULL	-	no_errors	C2orf80	HGNC	ENSG00000188674				96	0	0	63	33	34.375
LANCL1	0	genome.wustl.edu	37	2	211336712	211336712	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	2	211336712	211336712	C	T	SNP	LANCL1	ENST00000233714	human	ensembl	74_37	-1	known	missense	c.170	p.R57Q	0.996	pfam_LANC-like,superfamily_6-hairpin_glycosidase-like	pfam_LANC-like,superfamily_6-hairpin_glycosidase-like,prints_LanC-like_prot_euk,prints_LANC-like	-	no_errors	LANCL1	HGNC	ENSG00000115365				365	0	0	247	95	27.7778
FN1	0	genome.wustl.edu	37	2	216272919	216272919	+	Silent	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	2	216272919	216272919	C	T	SNP	FN1	ENST00000354785	human	ensembl	74_37	-1	known	silent	c.2430	p.A810	0.658	superfamily_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Fibronectin_type1,pfam_FN_type2_col-bd,superfamily_Kringle-like,superfamily_Fibronectin_type3,smart_Fibronectin_type1,smart_FN_type2_col-bd,smart_Fibronectin_type3,pfscan_Fibronectin_type1,pfscan_FN_type2_col-bd,pfscan_Fibronectin_type3	-	no_errors	FN1	HGNC	ENSG00000115414				134	0	0	74	31	29.5238
FN1	0	genome.wustl.edu	37	2	216288950	216288950	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	2	216288950	216288950	G	A	SNP	FN1	ENST00000354785	human	ensembl	74_37	-1	known	nonsense	c.1135	p.R379*	1.000	pfam_FN_type2_col-bd,superfamily_Kringle-like,smart_FN_type2_col-bd,pfscan_FN_type2_col-bd	pfam_Fibronectin_type3,pfam_Fibronectin_type1,pfam_FN_type2_col-bd,superfamily_Kringle-like,superfamily_Fibronectin_type3,smart_Fibronectin_type1,smart_FN_type2_col-bd,smart_Fibronectin_type3,pfscan_Fibronectin_type1,pfscan_FN_type2_col-bd,pfscan_Fibronectin_type3	-	no_errors	FN1	HGNC	ENSG00000115414				169	0	0	137	34	19.883
ASIC4	0	genome.wustl.edu	37	2	220401863	220401863	+	Silent	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	2	220401863	220401863	C	T	SNP	ASIC4	ENST00000347842	human	ensembl	74_37	+1	known	silent	c.1629	p.G543	1.000	pfam_Na+channel_ASC,prints_Na+channel_ASC	pfam_Na+channel_ASC,prints_Na+channel_ASC	-	no_errors	ASIC4	HGNC	ENSG00000072182				59	0	0	49	14	22.2222
OBSL1	0	genome.wustl.edu	37	2	220421395	220421395	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	2	220421395	220421395	C	T	SNP	OBSL1	ENST00000404537	human	ensembl	74_37	-1	known	missense	c.4117	p.E1373K	0.998	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	OBSL1	HGNC	ENSG00000124006				40	0	0	24	18	42.8571
SERPINE2	0	genome.wustl.edu	37	2	224866464	224866464	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	2	224866464	224866464	C	T	SNP	SERPINE2	ENST00000258405	human	ensembl	74_37	-1	known	missense	c.154	p.V52M	0.105	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	-	no_errors	SERPINE2	HGNC	ENSG00000135919				100	0	0	81	18	18.1818
DOCK10	0	genome.wustl.edu	37	2	225729333	225729333	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	2	225729333	225729333	T	G	SNP	DOCK10	ENST00000258390	human	ensembl	74_37	-1	known	missense	c.1539	p.K513N	1.000	NULL	pfam_DOCK_C,pfam_DOCK_C/D_N,pfam_Pleckstrin_homology,superfamily_ARM-type_fold,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	DOCK10	HGNC	ENSG00000135905				45	0	0	33	8	19.5122
DNER	0	genome.wustl.edu	37	2	230312192	230312192	+	Silent	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	2	230312192	230312192	G	A	SNP	DNER	ENST00000341772	human	ensembl	74_37	-1	known	silent	c.1326	p.N442	0.999	pfam_EG-like_dom,pfam_EGF_extracell,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom	pfam_EG-like_dom,pfam_EGF_extracell,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom	-	no_errors	DNER	HGNC	ENSG00000187957				48	0	0	36	11	23.4043
CHRNG	0	genome.wustl.edu	37	2	233408082	233408082	+	Silent	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	2	233408082	233408082	G	A	SNP	CHRNG	ENST00000389494	human	ensembl	74_37	+1	known	silent	c.903	p.A301	0.104	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_Nicotinic_acetylcholine_rcpt,prints_Neur_channel	-	no_errors	CHRNG	HGNC	ENSG00000196811				32	0	0	24	6	20
NGEF	0	genome.wustl.edu	37	2	233748147	233748147	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	2	233748147	233748147	G	A	SNP	NGEF	ENST00000264051	human	ensembl	74_37	-1	known	missense	c.1631	p.P544L	0.243	smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_DH-domain,pfam_SH3_domain,pfam_SH3_2,superfamily_DH-domain,superfamily_SH3_domain,smart_DH-domain,smart_Pleckstrin_homology,smart_SH3_domain,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_DH-domain	-	no_errors	NGEF	HGNC	ENSG00000066248				23	0	0	7	4	36.3636
NGEF	0	genome.wustl.edu	37	2	233759467	233759467	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	2	233759467	233759467	G	A	SNP	NGEF	ENST00000264051	human	ensembl	74_37	-1	known	missense	c.988	p.R330W	1.000	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_DH-domain	pfam_DH-domain,pfam_SH3_domain,pfam_SH3_2,superfamily_DH-domain,superfamily_SH3_domain,smart_DH-domain,smart_Pleckstrin_homology,smart_SH3_domain,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_DH-domain	-	no_errors	NGEF	HGNC	ENSG00000066248				88	0	0	51	30	37.037
NGEF	0	genome.wustl.edu	37	2	233785159	233785159	+	Silent	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	2	233785159	233785159	C	T	SNP	NGEF	ENST00000264051	human	ensembl	74_37	-1	known	silent	c.663	p.E221	0.996	NULL	pfam_DH-domain,pfam_SH3_domain,pfam_SH3_2,superfamily_DH-domain,superfamily_SH3_domain,smart_DH-domain,smart_Pleckstrin_homology,smart_SH3_domain,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_DH-domain	-	no_errors	NGEF	HGNC	ENSG00000066248				105	0	0	105	7	6.25
UGT1A8	0	genome.wustl.edu	37	2	234668959	234668959	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	2	234668959	234668959	G	A	SNP	UGT1A8	ENST00000305208	human	ensembl	74_37	+1	known	missense	c.26	p.R9H	0.000	NULL	pfam_UDP_glucos_trans,pfam_Glyco_trans_28_C	-	no_errors	UGT1A8	HGNC	ENSG00000242366				60	0	0	34	14	29.1667
ANKMY1	0	genome.wustl.edu	37	2	241439944	241439944	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	2	241439944	241439944	C	A	SNP	ANKMY1	ENST00000272972	human	ensembl	74_37	-1	known	missense	c.2298	p.K766N	0.002	NULL	pfam_Ankyrin_rpt,pfam_MORN,pfam_Znf_MYND,superfamily_Ankyrin_rpt-contain_dom,smart_MORN,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Znf_MYND	-	no_errors	ANKMY1	HGNC	ENSG00000144504				83	0	0	75	33	30.5556
RNPEPL1	0	genome.wustl.edu	37	2	241517080	241517080	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	2	241517080	241517080	C	T	SNP	RNPEPL1	ENST00000270357	human	ensembl	74_37	+1	known	missense	c.1256	p.A419V	0.997	pfam_Peptidase_M1_C,superfamily_ARM-type_fold	pfam_Peptidase_M1_C,pfam_Peptidase_M1_N,superfamily_ARM-type_fold,prints_Peptidase_M1_N	-	no_errors	RNPEPL1	HGNC	ENSG00000142327				19	0	0	22	2	8.33333
PASK	0	genome.wustl.edu	37	2	242076435	242076435	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	2	242076435	242076435	G	A	SNP	PASK	ENST00000358649	human	ensembl	74_37	-1	known	missense	c.1121	p.T374M	0.000	superfamily_PAS,smart_PAS	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_PAS_fold,superfamily_Kinase-like_dom,superfamily_PAS,smart_PAS,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_PAS,pfscan_Prot_kinase_dom,tigrfam_PAS	-	no_errors	PASK	HGNC	ENSG00000115687				89	0	0	73	4	5.19481
GAL3ST2	0	genome.wustl.edu	37	2	242741320	242741320	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	2	242741320	242741320	G	A	SNP	GAL3ST2	ENST00000192314	human	ensembl	74_37	+1	known	missense	c.244	p.V82M	0.000	pfam_Gal-3-0_sulfotransfrase,superfamily_P-loop_NTPase	pfam_Gal-3-0_sulfotransfrase,superfamily_P-loop_NTPase	-	no_errors	GAL3ST2	HGNC	ENSG00000154252				102	0	0	89	17	16.0377
KIF3C	0	genome.wustl.edu	37	2	26203671	26203671	+	Silent	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	2	26203671	26203671	G	A	SNP	KIF3C	ENST00000264712	human	ensembl	74_37	-1	known	silent	c.1116	p.N372	0.993	superfamily_P-loop_NTPase,smart_Kinesin_motor_dom	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF3C	HGNC	ENSG00000084731				94	0	0	80	49	37.9845
OTOF	0	genome.wustl.edu	37	2	26684636	26684636	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	2	26684636	26684636	C	T	SNP	OTOF	ENST00000272371	human	ensembl	74_37	-1	known	missense	c.5461	p.E1821K	1.000	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom	pfam_C2_dom,pfam_Ferlin_B-domain,pfam_FerIin-domain,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	-	no_errors	OTOF	HGNC	ENSG00000115155				198	0	0	144	53	26.9036
SLC35F6	0	genome.wustl.edu	37	2	27001127	27001127	+	Silent	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	2	27001127	27001127	C	T	SNP	SLC35F6	ENST00000344420	human	ensembl	74_37	+1	known	silent	c.864	p.S288	0.545	pfam_Tpt_PEP_trans_dom,pfam_UAA,pirsf_UCP036436	pfam_SLC35_F1/F2/F6,pfam_Nuc_sug_transpt,pfam_DMT,pfam_Tpt_PEP_trans_dom,pfam_UAA,pirsf_UCP036436	-	no_errors	SLC35F6	HGNC	ENSG00000213699				119	0	0	71	33	31.7308
ACP1	0	genome.wustl.edu	37	2	272122	272122	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	2	272122	272122	G	A	SNP	ACP1	ENST00000272065	human	ensembl	74_37	+1	known	missense	c.203	p.G68D	0.711	pfam_Ptyr_pPase_SF,superfamily_Ptyr_pPase_SF,smart_Ptyr_pPase_SF,prints_Tyr_phospatase/Ars_reductase	pfam_Ptyr_pPase_SF,superfamily_Ptyr_pPase_SF,smart_Ptyr_pPase_SF,prints_Tyr_Pase_low_mol_wt_mml,prints_Tyr_phospatase/Ars_reductase	-	no_errors	ACP1	HGNC	ENSG00000143727				100	0	0	63	20	24.0964
EMILIN1	0	genome.wustl.edu	37	2	27305128	27305128	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	2	27305128	27305128	G	A	SNP	EMILIN1	ENST00000380320	human	ensembl	74_37	+1	known	missense	c.689	p.R230H	1.000	NULL	pfam_EMI_domain,pfam_C1q,pfam_Collagen,superfamily_Tumour_necrosis_fac-like_dom,smart_C1q,pfscan_C1q,pfscan_EMI_domain	-	no_errors	EMILIN1	HGNC	ENSG00000138080				74	0	0	37	14	27.451
CAD	0	genome.wustl.edu	37	2	27458193	27458193	+	Silent	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	2	27458193	27458193	C	T	SNP	CAD	ENST00000264705	human	ensembl	74_37	+1	known	silent	c.3867	p.A1289	0.796	tigrfam_CarbamoylP_synth_lsu	pfam_CbamoylP_synth_lsu-like_ATP-bd,pfam_CarbamoylP_synth_ssu_N,pfam_Asp/Orn_carbamoyltranf_P-bd,pfam_GATASE,pfam_Asp_carbamoyltransf_Asp/Orn-bd,pfam_CarbamoylP_synth_lsu_oligo,pfam_CarbamoylP_synth_lsu_N,pfam_ATP-grasp_carboxylate-amine,pfam_MGS-like_dom,pfam_Dala_Dala_lig_C,pfam_Amidohydro_1,superfamily_Asp/Orn_carbamoylTrfase,superfamily_CarbamoylP_synth_lsu_oligo,superfamily_CarbamoylP_synth_ssu_N,superfamily_PreATP-grasp_dom,superfamily_MGS-like_dom,superfamily_Metal-dep_hydrolase_composite,smart_MGS-like_dom,pfscan_ATP-grasp,prints_CbamoylP_synth_lsu_CPSase_dom,prints_Asp_carbamoyltransf,prints_Asp/Orn_carbamoylTrfase,tigrfam_CarbamoylP_synth_lsu,tigrfam_CarbamoylP_synth_ssu,tigrfam_Asp_carbamoyltransf	-	no_errors	CAD	HGNC	ENSG00000084774				134	0	0	82	30	26.7857
TRIM54	0	genome.wustl.edu	37	2	27505617	27505617	+	Silent	SNP	T	T	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	2	27505617	27505617	T	G	SNP	TRIM54	ENST00000296098	human	ensembl	74_37	+1	known	silent	c.18	p.G6	0.992	NULL	pfam_Znf_C3HC4_RING-type,pfam_Znf_B-box,superfamily_Chorismate_mutase_type_II,smart_Znf_RING,smart_Znf_B-box,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM54	HGNC	ENSG00000138100				265	1	0.37594	236	37	13.5531
SRD5A2	0	genome.wustl.edu	37	2	31805786	31805786	+	RNA	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	2	31805786	31805786	G	A	SNP	SRD5A2	ENST00000233139	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.940	-	-	-	no_errors	SRD5A2	HGNC	ENSG00000049319				19	0	0	16	5	23.8095
YIPF4	0	genome.wustl.edu	37	2	32526480	32526480	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	2	32526480	32526480	A	G	SNP	YIPF4	ENST00000238831	human	ensembl	74_37	+1	known	missense	c.513	p.I171M	1.000	pfam_Yip1	pfam_Yip1	-	no_errors	YIPF4	HGNC	ENSG00000119820				164	0	0	132	66	33.3333
HEATR5B	0	genome.wustl.edu	37	2	37255949	37255949	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	2	37255949	37255949	C	T	SNP	HEATR5B	ENST00000233099	human	ensembl	74_37	-1	known	missense	c.3476	p.R1159Q	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	HEATR5B	HGNC	ENSG00000008869				204	0	0	156	43	21.608
SLC8A1	0	genome.wustl.edu	37	2	40392055	40392055	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	2	40392055	40392055	C	T	SNP	SLC8A1	ENST00000332839	human	ensembl	74_37	-1	known	missense	c.2108	p.R703H	1.000	tigrfam_Na_Ca_Ex	pfam_NaCa_Exmemb,pfam_Calx_beta,smart_Calx_beta,pfscan_DnaJ_domain,prints_Na_Ca_Ex,prints_NaCa_exhngr1,tigrfam_Na_Ca_Ex	-	no_errors	SLC8A1	HGNC	ENSG00000183023				182	0	0	117	48	29.0909
KCNG3	0	genome.wustl.edu	37	2	42720441	42720441	+	Silent	SNP	C	C	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	2	42720441	42720441	C	A	SNP	KCNG3	ENST00000306078	human	ensembl	74_37	-1	known	silent	c.201	p.S67	1.000	pfam_T1-type_BTB,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv3	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv6,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv3	-	no_errors	KCNG3	HGNC	ENSG00000171126				24	0	0	17	6	26.087
KCNG3	0	genome.wustl.edu	37	2	42720476	42720476	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	2	42720476	42720476	G	A	SNP	KCNG3	ENST00000306078	human	ensembl	74_37	-1	known	missense	c.166	p.R56C	1.000	pfam_T1-type_BTB,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv6	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv6,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv3	-	no_errors	KCNG3	HGNC	ENSG00000171126				20	0	0	11	5	31.25
PREPL	0	genome.wustl.edu	37	2	44548581	44548581	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	2	44548581	44548581	T	C	SNP	PREPL	ENST00000260648	human	ensembl	74_37	-1	known	missense	c.2098	p.T700A	1.000	pfam_Peptidase_S9	pfam_Peptidase_S9,pfam_Pept_S9A_N,prints_Peptidase_S9A	-	no_errors	PREPL	HGNC	ENSG00000138078				49	0	0	25	9	26.4706
EPAS1	0	genome.wustl.edu	37	2	46596995	46596995	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	2	46596995	46596995	A	C	SNP	EPAS1	ENST00000263734	human	ensembl	74_37	+1	known	missense	c.809	p.E270A	1.000	pfam_PAS_fold_3,pfam_PAS_fold,superfamily_PAS,smart_PAS,pfscan_PAS,tigrfam_PAS	pfam_PAS_fold_3,pfam_HIF-1_TAD_C,pfam_HIF_alpha_subunit,pfam_PAS_fold,superfamily_PAS,superfamily_bHLH_dom,smart_bHLH_dom,smart_PAS,smart_PAC,prints_Nuc_translocat,pfscan_PAS,pfscan_bHLH_dom,tigrfam_PAS	-	no_errors	EPAS1	HGNC	ENSG00000116016				25	0	0	15	3	16.6667
FBXO11	0	genome.wustl.edu	37	2	48046210	48046210	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	2	48046210	48046210	T	C	SNP	FBXO11	ENST00000403359	human	ensembl	74_37	-1	known	missense	c.1805	p.K602R	1.000	superfamily_F-box_dom,superfamily_Pectin_lyase_fold/virulence,smart_Carb-bd_sugar_hydrolysis-dom,smart_PbH1,tigrfam_Para_beta_helix_rpt-2	pfam_Znf_N-recognin,pfam_F-box_dom,superfamily_Pectin_lyase_fold/virulence,superfamily_F-box_dom,smart_F-box_dom,smart_PbH1,smart_Carb-bd_sugar_hydrolysis-dom,smart_Znf_N-recognin_met,pfscan_F-box_dom,pfscan_Znf_N-recognin,tigrfam_Para_beta_helix_rpt-2	-	no_errors	FBXO11	HGNC	ENSG00000138081				125	0	0	99	29	22.6562
BCL11A	0	genome.wustl.edu	37	2	60688143	60688143	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	2	60688143	60688143	C	T	SNP	BCL11A	ENST00000335712	human	ensembl	74_37	-1	known	missense	c.1904	p.R635H	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	BCL11A	HGNC	ENSG00000119866				68	0	0	39	19	32.7586
GKN2	0	genome.wustl.edu	37	2	69173591	69173591	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	2	69173591	69173591	G	A	SNP	GKN2	ENST00000328895	human	ensembl	74_37	-1	known	missense	c.317	p.A106V	0.013	pfam_BRICHOS_dom,pfscan_BRICHOS_dom	pfam_BRICHOS_dom,pfscan_BRICHOS_dom	-	no_errors	GKN2	HGNC	ENSG00000183607				195	0	0	149	17	10.241
ADD2	0	genome.wustl.edu	37	2	70890743	70890743	+	Silent	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	2	70890743	70890743	G	A	SNP	ADD2	ENST00000264436	human	ensembl	74_37	-1	known	silent	c.1995	p.G665	0.337	NULL	pfam_Aldolase_II/adducin_N,superfamily_Aldolase_II/adducin_N	-	no_errors	ADD2	HGNC	ENSG00000075340				188	0	0	176	62	26.0504
ALMS1	0	genome.wustl.edu	37	2	73762058	73762058	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	2	73762058	73762058	G	A	SNP	ALMS1	ENST00000264448	human	ensembl	74_37	+1	known	missense	c.9886	p.V3296I	0.559	NULL	NULL	-	no_errors	ALMS1	HGNC	ENSG00000116127				262	1	0.380228	184	63	25.5061
ACTG2	0	genome.wustl.edu	37	2	74140773	74140773	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	2	74140773	74140773	G	T	SNP	ACTG2	ENST00000345517	human	ensembl	74_37	+1	known	missense	c.613	p.A205S	1.000	pfam_Actin-related,smart_Actin-related	pfam_Actin-related,smart_Actin-related,prints_Actin-related	-	no_errors	ACTG2	HGNC	ENSG00000163017				97	0	0	73	26	26.2626
GCFC2	0	genome.wustl.edu	37	2	75917175	75917175	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	2	75917175	75917175	C	T	SNP	GCFC2	ENST00000321027	human	ensembl	74_37	-1	known	missense	c.1259	p.G420E	0.956	NULL	pfam_GCFC_dom	-	no_errors	GCFC2	HGNC	ENSG00000005436				39	0	0	37	10	21.2766
CTNNA2	0	genome.wustl.edu	37	2	80085151	80085151	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	2	80085151	80085151	G	A	SNP	CTNNA2	ENST00000361291	human	ensembl	74_37	+1	known	missense	c.413	p.R138Q	1.000	pfam_Vinculin/catenin,superfamily_Vinculin/catenin	pfam_Vinculin/catenin,superfamily_Vinculin/catenin,prints_Alpha_catenin,prints_Vinculin	-	no_errors	CTNNA2	HGNC	ENSG00000066032				104	1	0.952381	78	22	22
SUCLG1	0	genome.wustl.edu	37	2	84658722	84658722	+	Silent	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	2	84658722	84658722	G	A	SNP	SUCLG1	ENST00000393868	human	ensembl	74_37	-1	known	silent	c.735	p.N245	0.044	pfam_CoA_ligase,superfamily_Succinyl-CoA_synth-like,pirsf_CoA_lig_alpha,tigrfam_CoA_lig_alpha	pfam_CoA-bd,pfam_CoA_ligase,superfamily_Succinyl-CoA_synth-like,smart_CoA-bd,pirsf_CoA_lig_alpha,prints_CoA_lig_alpha,tigrfam_CoA_lig_alpha	-	no_errors	SUCLG1	HGNC	ENSG00000163541				141	0	0	97	38	28.1481
DNAH6	0	genome.wustl.edu	37	2	84780090	84780090	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	2	84780090	84780090	A	G	SNP	DNAH6	ENST00000237449	human	ensembl	74_37	+1	known	missense	c.1534	p.M512V	1.000	NULL	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH6	HGNC	ENSG00000115423				135	0	0	111	37	25
MRPL35	0	genome.wustl.edu	37	2	86433347	86433347	+	Silent	SNP	T	T	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	2	86433347	86433347	T	C	SNP	MRPL35	ENST00000337109	human	ensembl	74_37	+1	known	silent	c.162	p.V54	0.994	NULL	pfam_Ribosomal_L35	-	no_errors	MRPL35	HGNC	ENSG00000132313				251	1	0.396825	250	17	6.36704
RMND5A	0	genome.wustl.edu	37	2	87000484	87000484	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	2	87000484	87000484	T	C	SNP	RMND5A	ENST00000283632	human	ensembl	74_37	+1	known	missense	c.1126	p.Y376H	1.000	NULL	smart_LisH_dimerisation,smart_CTLH_C,smart_CRA_dom,pfscan_LisH_dimerisation,pfscan_CTLH_C	-	no_errors	RMND5A	HGNC	ENSG00000153561				106	0	0	115	7	5.7377
CD8A	0	genome.wustl.edu	37	2	87017507	87017507	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	2	87017507	87017507	G	A	SNP	CD8A	ENST00000538832	human	ensembl	74_37	-1	known	missense	c.470	p.S157L	0.048	pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	-	no_errors	CD8A	HGNC	ENSG00000153563				108	0	0	73	25	25.5102
SMYD1	0	genome.wustl.edu	37	2	88409944	88409944	+	Silent	SNP	C	C	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	2	88409944	88409944	C	A	SNP	SMYD1	ENST00000419482	human	ensembl	74_37	+1	known	silent	c.1386	p.R462	0.000	NULL	pfam_SET_dom,pfam_Znf_MYND,smart_SET_dom,pfscan_SET_dom,pfscan_Znf_MYND	-	no_errors	SMYD1	HGNC	ENSG00000115593				15	0	0	11	5	31.25
EIF2AK3	0	genome.wustl.edu	37	2	88857427	88857427	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	2	88857427	88857427	G	T	SNP	EIF2AK3	ENST00000303236	human	ensembl	74_37	-1	known	missense	c.3178	p.P1060T	1.000	pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Quinonprotein_ADH-like_supfam,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	EIF2AK3	HGNC	ENSG00000172071				171	0	0	123	41	25
ANKRD20A8P	0	genome.wustl.edu	37	2	95519065	95519065	+	RNA	SNP	T	T	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	2	95519065	95519065	T	C	SNP	ANKRD20A8P	ENST00000432432	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.911	-	-	-	no_errors	ANKRD20A8P	HGNC	ENSG00000229089				219	0	0	154	46	23
ZAP70	0	genome.wustl.edu	37	2	98351887	98351887	+	Silent	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	2	98351887	98351887	C	T	SNP	ZAP70	ENST00000264972	human	ensembl	74_37	+1	known	silent	c.1257	p.G419	0.012	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Tyr_kinase_non-rcpt_SYK/ZAP70,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_SH2,superfamily_Kinase-like_dom,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Tyr_kinase_non-rcpt_SYK/ZAP70,pfscan_SH2,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2	-	no_errors	ZAP70	HGNC	ENSG00000115085				151	1	0.657895	153	10	6.13497
PDYN	0	genome.wustl.edu	37	20	1961052	1961052	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	20	1961052	1961052	C	T	SNP	PDYN	ENST00000217305	human	ensembl	74_37	-1	known	missense	c.682	p.G228S	0.997	NULL	pfam_Opioid_neupept,prints_Proenkphlin_B,prints_Opioid_neupept	-	no_errors	PDYN	HGNC	ENSG00000101327				190	0	0	136	56	29.1667
C20orf26	0	genome.wustl.edu	37	20	20177224	20177224	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	20	20177224	20177224	A	G	SNP	C20orf26	ENST00000245957	human	ensembl	74_37	+1	known	missense	c.1601	p.Y534C	1.000	superfamily_Acyl_CoA_acyltransferase	superfamily_Acyl_CoA_acyltransferase	-	no_errors	C20orf26	HGNC	ENSG00000089101				91	0	0	80	11	12.0879
CD93	0	genome.wustl.edu	37	20	23065849	23065849	+	Silent	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	20	23065849	23065849	C	T	SNP	CD93	ENST00000246006	human	ensembl	74_37	-1	known	silent	c.981	p.T327	0.000	pirsf_CD93/CD141,pfam_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom	pirsf_CD93/CD141,pfam_EGF-like_Ca-bd_dom,pfam_EG-like_dom,pfam_C-type_lectin,superfamily_C-type_lectin_fold,superfamily_MFS_dom_general_subst_transpt,smart_C-type_lectin,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom,pfscan_C-type_lectin	-	no_errors	CD93	HGNC	ENSG00000125810				77	0	0	43	27	38.5714
CD93	0	genome.wustl.edu	37	20	23066467	23066467	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	20	23066467	23066467	C	A	SNP	CD93	ENST00000246006	human	ensembl	74_37	-1	known	missense	c.363	p.E121D	0.683	pirsf_CD93/CD141,pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	pirsf_CD93/CD141,pfam_EGF-like_Ca-bd_dom,pfam_EG-like_dom,pfam_C-type_lectin,superfamily_C-type_lectin_fold,superfamily_MFS_dom_general_subst_transpt,smart_C-type_lectin,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom,pfscan_C-type_lectin	-	no_errors	CD93	HGNC	ENSG00000125810				20	0	0	9	6	40
POFUT1	0	genome.wustl.edu	37	20	30818680	30818680	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	20	30818680	30818680	C	T	SNP	POFUT1	ENST00000375749	human	ensembl	74_37	+1	known	missense	c.794	p.P265L	1.000	pfam_GDP-Fuc_O-FucTrfase	pfam_GDP-Fuc_O-FucTrfase	-	no_errors	POFUT1	HGNC	ENSG00000101346				108	0	0	67	28	29.4737
CBFA2T2	0	genome.wustl.edu	37	20	32232389	32232389	+	Silent	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	20	32232389	32232389	G	A	SNP	CBFA2T2	ENST00000346541	human	ensembl	74_37	+1	known	silent	c.1752	p.S584	0.013	NULL	pfam_NHR2,pfam_TAFH_NHR1,pfam_Znf_MYND,smart_TAFH_NHR1,pfscan_TAFH_NHR1,pfscan_Znf_MYND,prints_ETO,prints_MTGR1	-	no_errors	CBFA2T2	HGNC	ENSG00000078699				130	0	0	98	41	29.4964
EIF2S2	0	genome.wustl.edu	37	20	32684518	32684518	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	20	32684518	32684518	C	T	SNP	EIF2S2	ENST00000374980	human	ensembl	74_37	-1	known	missense	c.628	p.V210I	1.000	pfam_Transl_init_fac_IF2/IF5,superfamily_Transl_init_fac_IF2/IF5_N,smart_Transl_init_fac_IF2/IF5	pfam_Transl_init_fac_IF2/IF5,superfamily_Transl_init_fac_IF2/IF5_N,superfamily_Transl_init_fac_IF2/IF5_Zn-bd,smart_Transl_init_fac_IF2/IF5	-	no_errors	EIF2S2	HGNC	ENSG00000125977				188	0	0	140	65	31.7073
CEP250	0	genome.wustl.edu	37	20	34092703	34092703	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	20	34092703	34092703	G	A	SNP	CEP250	ENST00000397527	human	ensembl	74_37	+1	known	nonsense	c.6506	p.W2169*	1.000	NULL	superfamily_Prefoldin	-	no_errors	CEP250	HGNC	ENSG00000126001				91	0	0	65	28	30.1075
AAR2	0	genome.wustl.edu	37	20	34827741	34827741	+	Splice_Site	SNP	A	A	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	20	34827741	34827741	A	C	SNP	AAR2	ENST00000320849	human	ensembl	74_37	+1	known	splice_site	c.1-2	e1-2	0.906	-	-	-	no_errors	AAR2	HGNC	ENSG00000131043				68	0	0	51	11	17.7419
CTNNBL1	0	genome.wustl.edu	37	20	36488350	36488350	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	20	36488350	36488350	T	A	SNP	CTNNBL1	ENST00000405275	human	ensembl	74_37	+1	known	missense	c.1361	p.F454Y	1.000	NULL	pfam_CTNNBL1_N,superfamily_ARM-type_fold	-	no_errors	CTNNBL1	HGNC	ENSG00000132792				50	0	0	47	11	18.9655
PLCG1	0	genome.wustl.edu	37	20	39800838	39800838	+	Silent	SNP	T	T	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	20	39800838	39800838	T	C	SNP	PLCG1	ENST00000244007	human	ensembl	74_37	+1	known	silent	c.2814	p.T938	0.008	superfamily_PLC-like_Pdiesterase_TIM-brl,pirsf_PLC-gamma	pfam_PLipase_C_PInositol-sp_X_dom,pfam_SH2,pfam_PLipase_C_Pinositol-sp_Y,pfam_Pleckstrin_homology,pfam_C2_dom,pfam_SH3_domain,pfam_SH3_2,pfam_PLipase_C_EF-hand-like,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_dom,superfamily_SH3_domain,smart_Pleckstrin_homology,smart_PLipase_C_PInositol-sp_X_dom,smart_SH2,smart_SH3_domain,smart_PLipase_C_Pinositol-sp_Y,smart_C2_dom,pirsf_PLC-gamma,pfscan_EF_hand_dom,pfscan_C2_dom,pfscan_Pleckstrin_homology,pfscan_SH2,pfscan_SH3_domain,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y,prints_Pinositol_PLipase_C,prints_SH2	-	no_errors	PLCG1	HGNC	ENSG00000124181				190	0	0	132	47	26.257
CHD6	0	genome.wustl.edu	37	20	40049262	40049262	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	20	40049262	40049262	C	G	SNP	CHD6	ENST00000373233	human	ensembl	74_37	-1	known	missense	c.6013	p.E2005Q	0.650	NULL	pfam_SNF2_N,pfam_Chromo_domain,pfam_Helicase_C,pfam_Helicase/UvrB_dom,pfam_BRK_domain,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,smart_BRK_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD6	HGNC	ENSG00000124177				123	0	0	84	23	21.4953
CHD6	0	genome.wustl.edu	37	20	40102043	40102043	+	Silent	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	20	40102043	40102043	C	T	SNP	CHD6	ENST00000373233	human	ensembl	74_37	-1	known	silent	c.2583	p.A861	0.919	pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_C,pfscan_Helicase_C	pfam_SNF2_N,pfam_Chromo_domain,pfam_Helicase_C,pfam_Helicase/UvrB_dom,pfam_BRK_domain,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,smart_BRK_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD6	HGNC	ENSG00000124177				79	0	0	58	29	33.3333
ZMYND8	0	genome.wustl.edu	37	20	45875225	45875225	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	20	45875225	45875225	A	G	SNP	ZMYND8	ENST00000536340	human	ensembl	74_37	-1	known	missense	c.1832	p.V611A	1.000	pfam_DUF3544	pfam_DUF3544,pfam_Bromodomain,pfam_PWWP_dom,pfam_Znf_PHD-finger,pfam_Znf_MYND,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_Bromodomain,smart_PWWP_dom,pfscan_PWWP_dom,pfscan_Znf_MYND,pfscan_Znf_PHD-finger,pfscan_Bromodomain	-	no_errors	ZMYND8	HGNC	ENSG00000101040				146	0	0	144	40	21.7391
ENSG00000255438	0	genome.wustl.edu	37	20	46313165	46313165	+	RNA	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	20	46313165	46313165	G	A	SNP	ENSG00000255438	ENST00000526566	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	CTD-2653D5.1	Clone_based_vega_gene	ENSG00000255438				26	0	0	13	6	31.5789
STAU1	0	genome.wustl.edu	37	20	47734382	47734382	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	20	47734382	47734382	C	T	SNP	STAU1	ENST00000371856	human	ensembl	74_37	-1	known	missense	c.1441	p.V481I	0.768	NULL	pfam_dsRNA-bd_dom,smart_dsRNA-bd_dom,pfscan_dsRNA-bd_dom	-	no_errors	STAU1	HGNC	ENSG00000124214				109	0	0	70	22	23.913
ATP9A	0	genome.wustl.edu	37	20	50255941	50255941	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	20	50255941	50255941	T	C	SNP	ATP9A	ENST00000338821	human	ensembl	74_37	-1	known	missense	c.1609	p.T537A	1.000	pfam_HAD-like_dom,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,tigrfam_ATPase_P-typ_Plipid-transp	pfam_ATPase_P-typ_transduc_dom_A,pfam_HAD-like_dom,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Plipid-transp,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP9A	HGNC	ENSG00000054793				161	0	0	156	13	7.69231
ZFP64	0	genome.wustl.edu	37	20	50701370	50701370	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	20	50701370	50701370	C	T	SNP	ZFP64	ENST00000361387	human	ensembl	74_37	-1	known	missense	c.1664	p.R555Q	0.004	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZFP64	HGNC	ENSG00000020256				68	0	0	55	13	19.1176
TSHZ2	0	genome.wustl.edu	37	20	51870150	51870150	+	Silent	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	20	51870150	51870150	C	T	SNP	TSHZ2	ENST00000371497	human	ensembl	74_37	+1	known	silent	c.153	p.D51	0.730	NULL	superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	TSHZ2	HGNC	ENSG00000182463				56	0	0	51	21	29.1667
BCAS1	0	genome.wustl.edu	37	20	52645335	52645335	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	20	52645335	52645335	T	C	SNP	BCAS1	ENST00000371440	human	ensembl	74_37	-1	known	missense	c.319	p.T107A	0.997	NULL	NULL	-	no_errors	BCAS1	HGNC	ENSG00000064787				77	0	0	49	19	27.9412
ZNF831	0	genome.wustl.edu	37	20	57766920	57766920	+	Silent	SNP	T	T	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	20	57766920	57766920	T	A	SNP	ZNF831	ENST00000371030	human	ensembl	74_37	+1	novel	silent	c.846	p.S282	0.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF831	HGNC	ENSG00000124203				140	0	0	104	23	18.1102
PHACTR3	0	genome.wustl.edu	37	20	58349364	58349364	+	Silent	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	20	58349364	58349364	C	T	SNP	PHACTR3	ENST00000371015	human	ensembl	74_37	+1	known	silent	c.993	p.S331	1.000	NULL	pfam_RPEL_repeat,smart_RPEL_repeat,pfscan_RPEL_repeat	-	no_errors	PHACTR3	HGNC	ENSG00000087495				98	0	0	50	19	27.5362
TCFL5	0	genome.wustl.edu	37	20	61488984	61488984	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	20	61488984	61488984	G	A	SNP	TCFL5	ENST00000335351	human	ensembl	74_37	-1	known	missense	c.1001	p.A334V	1.000	NULL	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	TCFL5	HGNC	ENSG00000101190				94	0	0	70	22	23.913
HELZ2	0	genome.wustl.edu	37	20	62196230	62196230	+	Silent	SNP	G	G	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	20	62196230	62196230	G	T	SNP	HELZ2	ENST00000467148	human	ensembl	74_37	-1	known	silent	c.3945	p.T1315	0.000	NULL	superfamily_P-loop_NTPase	-	no_errors	HELZ2	HGNC	ENSG00000130589				71	0	0	52	4	7.14286
ARFRP1	0	genome.wustl.edu	37	20	62333552	62333552	+	Silent	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	20	62333552	62333552	G	A	SNP	ARFRP1	ENST00000324228	human	ensembl	74_37	-1	known	silent	c.282	p.H94	0.028	pfam_Small_GTPase_ARF/SAR,pfam_Small_GTPase,pfam_MIRO-like,pfam_Gprotein_alpha_su,pfam_SRP_receptor_beta_su,pfam_Gtr1_RagA,superfamily_P-loop_NTPase,smart_Small_GTPase_SAR1,smart_Small_GTPase_ARF,smart_Small_GTPase_Rab_type,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase_ARF/SAR,pfam_Small_GTPase,pfam_MIRO-like,pfam_Gprotein_alpha_su,pfam_SRP_receptor_beta_su,pfam_Gtr1_RagA,superfamily_P-loop_NTPase,smart_Small_GTPase_SAR1,smart_Small_GTPase_ARF,smart_Small_GTPase_Rab_type,prints_Small_GTPase,prints_Small_GTPase_ARF/SAR,tigrfam_Small_GTP-bd_dom	-	no_errors	ARFRP1	HGNC	ENSG00000101246				58	0	0	52	23	30.6667
CYYR1	0	genome.wustl.edu	37	21	27938629	27938629	+	Silent	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	21	27938629	27938629	C	T	SNP	CYYR1	ENST00000435845	human	ensembl	74_37	-1	known	silent	c.456	p.T152	0.002	pfam_CYYR1	pfam_CYYR1	-	no_errors	CYYR1	HGNC	ENSG00000166265				62	0	0	42	13	23.6364
LTN1	0	genome.wustl.edu	37	21	30365199	30365199	+	Silent	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	21	30365199	30365199	G	A	SNP	LTN1	ENST00000389194	human	ensembl	74_37	-1	known	silent	c.66	p.A22	0.000	NULL	pfam_Znf_C3HC4_RING-type,superfamily_ARM-type_fold,smart_Znf_RING-CH,pfscan_Znf_RING	-	no_errors	LTN1	HGNC	ENSG00000198862				29	0	0	14	6	30
TIAM1	0	genome.wustl.edu	37	21	32639181	32639181	+	Silent	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	21	32639181	32639181	C	T	SNP	TIAM1	ENST00000286827	human	ensembl	74_37	-1	known	silent	c.108	p.T36	0.018	NULL	pfam_DH-domain,pfam_Pleckstrin_homology,pfam_Raf-like_ras-bd,pfam_PDZ,superfamily_DH-domain,superfamily_PDZ,smart_Pleckstrin_homology,smart_Raf-like_ras-bd,smart_PDZ,smart_DH-domain,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_Raf-like_ras-bd,pfscan_DH-domain	-	no_errors	TIAM1	HGNC	ENSG00000156299				47	0	0	32	12	27.2727
PAXBP1	0	genome.wustl.edu	37	21	34113929	34113929	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	21	34113929	34113929	A	G	SNP	PAXBP1	ENST00000290178	human	ensembl	74_37	-1	putative	missense	c.2339	p.I780T	0.701	NULL	pfam_GCFC_dom	-	no_errors	PAXBP1	HGNC	ENSG00000159086				23	0	0	15	10	40
SON	0	genome.wustl.edu	37	21	34924556	34924556	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	21	34924556	34924556	C	T	SNP	SON	ENST00000356577	human	ensembl	74_37	+1	known	missense	c.3019	p.R1007C	1.000	NULL	pfam_G_patch_dom,superfamily_WD40_repeat_dom,smart_G_patch_dom,pfscan_G_patch_dom,pfscan_dsRNA-bd_dom	-	no_errors	SON	HGNC	ENSG00000159140				115	0	0	89	34	27.6423
RIPPLY3	0	genome.wustl.edu	37	21	38380463	38380463	+	Silent	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	21	38380463	38380463	G	A	SNP	RIPPLY3	ENST00000329553	human	ensembl	74_37	+1	known	silent	c.111	p.A37	0.000	NULL	NULL	-	no_errors	RIPPLY3	HGNC	ENSG00000183145				76	0	0	56	16	22.2222
ZBTB21	0	genome.wustl.edu	37	21	43412127	43412127	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	21	43412127	43412127	G	A	SNP	ZBTB21	ENST00000310826	human	ensembl	74_37	-1	known	missense	c.2078	p.P693L	1.000	pfscan_Znf_C2H2	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB21	HGNC	ENSG00000173276				356	0	0	258	104	28.7293
RSPH1	0	genome.wustl.edu	37	21	43905830	43905830	+	Silent	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	21	43905830	43905830	G	A	SNP	RSPH1	ENST00000291536	human	ensembl	74_37	-1	known	silent	c.450	p.A150	0.312	smart_MORN	pfam_MORN,smart_MORN	-	no_errors	RSPH1	HGNC	ENSG00000160188				154	0	0	100	44	30.5556
RRP1B	0	genome.wustl.edu	37	21	45107681	45107681	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	21	45107681	45107681	C	T	SNP	RRP1B	ENST00000340648	human	ensembl	74_37	+1	known	missense	c.1426	p.R476W	0.000	NULL	pfam_Nop52	-	no_errors	RRP1B	HGNC	ENSG00000160208				109	0	0	90	34	27.4194
COL18A1	0	genome.wustl.edu	37	21	46907379	46907379	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	21	46907379	46907379	G	A	SNP	COL18A1	ENST00000359759	human	ensembl	74_37	+1	known	missense	c.3097	p.G1033R	0.820	NULL	pfam_Collagenase_NC10/endostatin,pfam_DUF959_COL18_N,pfam_Collagen,pfam_Frizzled_dom,superfamily_C-type_lectin_fold,superfamily_ConA-like_lec_gl_sf,superfamily_Frizzled_dom,smart_Frizzled_dom,smart_Laminin_G,pfscan_Frizzled_dom	-	no_errors	COL18A1	HGNC	ENSG00000182871				98	0	0	66	15	18.5185
COL6A2	0	genome.wustl.edu	37	21	47545909	47545909	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	21	47545909	47545909	C	T	SNP	COL6A2	ENST00000300527	human	ensembl	74_37	+1	known	missense	c.2180	p.A727V	0.996	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_VWF_A,pfam_Collagen,smart_VWF_A,pfscan_VWF_A	-	no_errors	COL6A2	HGNC	ENSG00000142173				119	0	0	51	23	31.0811
LSS	0	genome.wustl.edu	37	21	47633708	47633708	+	Silent	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	21	47633708	47633708	G	A	SNP	LSS	ENST00000356396	human	ensembl	74_37	-1	known	silent	c.1053	p.D351	0.026	superfamily_Terpenoid_cyclase/PrenylTrfase,tigrfam_Squalene_cyclase	pfam_Prenyltrans,superfamily_Terpenoid_cyclase/PrenylTrfase,tigrfam_Squalene_cyclase	-	no_errors	LSS	HGNC	ENSG00000160285				31	0	0	28	5	15.1515
DIP2A	0	genome.wustl.edu	37	21	47986480	47986480	+	Silent	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	21	47986480	47986480	C	T	SNP	DIP2A	ENST00000318711	human	ensembl	74_37	+1	known	silent	c.4350	p.H1450	0.134	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig,pfam_DMAP1-bd	-	no_errors	DIP2A	HGNC	ENSG00000160305				47	0	0	45	10	18.1818
ENSG00000161103	0	genome.wustl.edu	37	22	18844920	18844920	+	RNA	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	22	18844920	18844920	C	T	SNP	ENSG00000161103	ENST00000412938	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	AC008132.13	Clone_based_vega_gene	ENSG00000161103				82	0	0	61	7	10.2941
CLTCL1	0	genome.wustl.edu	37	22	19241652	19241652	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	22	19241652	19241652	T	C	SNP	CLTCL1	ENST00000263200	human	ensembl	74_37	-1	known	missense	c.349	p.N117D	1.000	superfamily_Clathrin_H-chain_propeller_N,pirsf_Clathrin_heavy_chain	pfam_Clathrin_H-chain/VPS_repeat,pfam_Clathrin_H-chain_propeller_rpt,pfam_Clathrin_H-chain_linker_core,superfamily_Clathrin_H-chain_propeller_N,superfamily_ARM-type_fold,smart_Clathrin_H-chain/VPS_repeat,pirsf_Clathrin_heavy_chain	-	no_errors	CLTCL1	HGNC	ENSG00000070371				38	0	0	28	10	26.3158
TXNRD2	0	genome.wustl.edu	37	22	19905729	19905729	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	22	19905729	19905729	G	A	SNP	TXNRD2	ENST00000535882	human	ensembl	74_37	-1	known	missense	c.383	p.A128V	0.997	pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,pfam_GIDA-rel,tigrfam_Thioredoxin/glutathione_Rdtase	pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,pfam_Pyr_nucl-diS_OxRdtase_dimer,pfam_Pyr_OxRdtase_NAD-bd_dom,pfam_FAD_bind_dom,pfam_GIDA-rel,superfamily_FAD/NAD-linked_Rdtase_dimer,prints_FAD_pyr_nucl-diS_OxRdtase,prints_Hg_reductase,tigrfam_Thioredoxin/glutathione_Rdtase	-	no_errors	TXNRD2	HGNC	ENSG00000184470				70	0	0	39	11	22
RTN4R	0	genome.wustl.edu	37	22	20230039	20230039	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	22	20230039	20230039	C	T	SNP	RTN4R	ENST00000043402	human	ensembl	74_37	-1	known	missense	c.617	p.R206H	1.000	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	RTN4R	HGNC	ENSG00000040608				90	0	0	71	29	29
ZNF74	0	genome.wustl.edu	37	22	20760268	20760268	+	Silent	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	22	20760268	20760268	C	T	SNP	ZNF74	ENST00000356671	human	ensembl	74_37	+1	known	silent	c.945	p.C315	0.460	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF74	HGNC	ENSG00000185252				60	0	0	33	20	37.7358
LZTR1	0	genome.wustl.edu	37	22	21340177	21340177	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	22	21340177	21340177	C	G	SNP	LZTR1	ENST00000215739	human	ensembl	74_37	+1	known	missense	c.311	p.S104C	1.000	pfam_Kelch_1,smart_Kelch_1	pfam_Kelch_1,pfam_BTB_POZ,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_Kelch_1,smart_BTB/POZ-like,pfscan_BTB/POZ-like	-	no_errors	LZTR1	HGNC	ENSG00000099949				77	0	0	39	26	40
SLC7A4	0	genome.wustl.edu	37	22	21385698	21385698	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	22	21385698	21385698	C	T	SNP	SLC7A4	ENST00000382932	human	ensembl	74_37	-1	known	missense	c.404	p.R135H	1.000	pfam_AA-permease/SLC12A_dom,pirsf_AA/rel_permease1	pfam_AA-permease/SLC12A_dom,pirsf_AA/rel_permease1	-	no_errors	SLC7A4	HGNC	ENSG00000099960				41	0	0	30	7	18.9189
ZNF280A	0	genome.wustl.edu	37	22	22869883	22869883	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	22	22869883	22869883	C	A	SNP	ZNF280A	ENST00000302097	human	ensembl	74_37	-1	known	missense	c.72	p.E24D	0.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF280A	HGNC	ENSG00000169548				176	0	0	138	37	21.1429
ZDHHC8P1	0	genome.wustl.edu	37	22	23744255	23744255	+	RNA	SNP	A	A	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	22	23744255	23744255	A	G	SNP	ZDHHC8P1	ENST00000255890	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.045	-	-	-	no_errors	ZDHHC8P1	HGNC	ENSG00000133519				12	0	0	9	5	35.7143
SUSD2	0	genome.wustl.edu	37	22	24581755	24581755	+	Silent	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	22	24581755	24581755	G	A	SNP	SUSD2	ENST00000358321	human	ensembl	74_37	+1	known	silent	c.1197	p.T399	0.000	pfam_AMOP,smart_AMOP,pfscan_AMOP	pfam_AMOP,pfam_VWF_type-D,pfam_Sushi_SCR_CCP,pfam_Somatomedin_B_dom,superfamily_Sushi_SCR_CCP,superfamily_Ig_E-set,smart_AMOP,smart_VWF_type-D,smart_Sushi_SCR_CCP,pfscan_AMOP,pfscan_Somatomedin_B_dom,pfscan_Sushi_SCR_CCP	-	no_errors	SUSD2	HGNC	ENSG00000099994				13	0	0	17	4	19.0476
GGT1	0	genome.wustl.edu	37	22	25019835	25019835	+	Silent	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	22	25019835	25019835	C	T	SNP	GGT1	ENST00000248923	human	ensembl	74_37	+1	known	silent	c.972	p.Y324	0.828	pfam_GGT_peptidase,tigrfam_GGT_peptidase	pfam_GGT_peptidase,prints_GGT_peptidase,tigrfam_GGT_peptidase	-	no_errors	GGT1	HGNC	ENSG00000100031				30	0	0	35	10	22.2222
SGSM1	0	genome.wustl.edu	37	22	25251295	25251295	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	22	25251295	25251295	T	A	SNP	SGSM1	ENST00000400359	human	ensembl	74_37	+1	known	missense	c.567	p.D189E	0.989	pfscan_Run	pfam_Run,pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Run,smart_Rab-GTPase-TBC_dom,pfscan_Run,pfscan_Rab-GTPase-TBC_dom	-	no_errors	SGSM1	HGNC	ENSG00000167037				22	0	0	17	4	19.0476
SEZ6L	0	genome.wustl.edu	37	22	26736590	26736590	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	22	26736590	26736590	A	G	SNP	SEZ6L	ENST00000248933	human	ensembl	74_37	+1	known	missense	c.2204	p.N735S	1.000	superfamily_CUB_dom,smart_CUB_dom,pfscan_CUB_dom	pfam_CUB_dom,pfam_Sushi_SCR_CCP,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_CUB_dom,smart_Sushi_SCR_CCP,pfscan_CUB_dom,pfscan_Sushi_SCR_CCP	-	no_errors	SEZ6L	HGNC	ENSG00000100095				64	0	0	60	9	13.0435
CHEK2	0	genome.wustl.edu	37	22	29090021	29090021	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	22	29090021	29090021	T	C	SNP	CHEK2	ENST00000382580	human	ensembl	74_37	-1	known	missense	c.1589	p.Q530R	1.000	superfamily_Kinase-like_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_FHA_dom,superfamily_Kinase-like_dom,superfamily_SMAD_FHA_domain,smart_FHA_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_FHA_dom,pfscan_Prot_kinase_dom	-	no_errors	CHEK2	HGNC	ENSG00000183765				377	0	0	287	23	7.41935
ZNRF3	0	genome.wustl.edu	37	22	29440867	29440867	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	22	29440867	29440867	C	T	SNP	ZNRF3	ENST00000544604	human	ensembl	74_37	+1	known	nonsense	c.733	p.R245*	1.000	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	ZNRF3	HGNC	ENSG00000183579				87	0	0	60	30	33.3333
AP1B1	0	genome.wustl.edu	37	22	29745219	29745219	+	Silent	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	22	29745219	29745219	G	A	SNP	AP1B1	ENST00000357586	human	ensembl	74_37	-1	known	silent	c.1425	p.D475	0.766	pfam_Clathrin/coatomer_adapt-like_N,superfamily_ARM-type_fold,pirsf_AP_complex_bsu_1_2_4	pfam_Clathrin/coatomer_adapt-like_N,pfam_B-adaptin_app_sub_C,pfam_HEAT,pfam_Clathrin_a/b/g-adaptin_app_Ig,superfamily_ARM-type_fold,superfamily_Coatomer/calthrin_app_sub_C,superfamily_Coatomer/clathrin_app_Ig-like,smart_Armadillo,smart_Clathrin_a/b/g-adaptin_app_Ig,pirsf_AP_complex_bsu_1_2_4	-	no_errors	AP1B1	HGNC	ENSG00000100280				90	0	0	69	29	29.5918
AP1B1	0	genome.wustl.edu	37	22	29754898	29754898	+	Silent	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	22	29754898	29754898	G	A	SNP	AP1B1	ENST00000357586	human	ensembl	74_37	-1	known	silent	c.342	p.R114	0.576	pfam_Clathrin/coatomer_adapt-like_N,superfamily_ARM-type_fold,pirsf_AP_complex_bsu_1_2_4	pfam_Clathrin/coatomer_adapt-like_N,pfam_B-adaptin_app_sub_C,pfam_HEAT,pfam_Clathrin_a/b/g-adaptin_app_Ig,superfamily_ARM-type_fold,superfamily_Coatomer/calthrin_app_sub_C,superfamily_Coatomer/clathrin_app_Ig-like,smart_Armadillo,smart_Clathrin_a/b/g-adaptin_app_Ig,pirsf_AP_complex_bsu_1_2_4	-	no_errors	AP1B1	HGNC	ENSG00000100280				18	0	0	15	13	46.4286
MTMR3	0	genome.wustl.edu	37	22	30408454	30408454	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	22	30408454	30408454	C	T	SNP	MTMR3	ENST00000401950	human	ensembl	74_37	+1	known	missense	c.1219	p.R407W	1.000	smart_Tyr_Pase_cat	pfam_Myotubularin-like_Pase_dom,pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,smart_Tyr_Pase_cat,smart_Znf_FYVE,pfscan_Znf_FYVE-rel	-	no_errors	MTMR3	HGNC	ENSG00000100330				501	0	0	472	100	17.4825
PATZ1	0	genome.wustl.edu	37	22	31741479	31741479	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	22	31741479	31741479	C	T	SNP	PATZ1	ENST00000266269	human	ensembl	74_37	-1	known	missense	c.110	p.G37D	1.000	pfam_BTB_POZ,superfamily_BTB/POZ_fold	pfam_Znf_C2H2,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	PATZ1	HGNC	ENSG00000100105				37	0	0	20	7	25.9259
EIF4ENIF1	0	genome.wustl.edu	37	22	31840668	31840668	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	22	31840668	31840668	C	T	SNP	EIF4ENIF1	ENST00000330125	human	ensembl	74_37	-1	known	missense	c.1997	p.R666Q	1.000	pfam_eIF4E_transporter	pfam_eIF4E_transporter	-	no_errors	EIF4ENIF1	HGNC	ENSG00000184708				226	0	0	201	23	10.2679
SFI1	0	genome.wustl.edu	37	22	32009377	32009377	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	22	32009377	32009377	G	T	SNP	SFI1	ENST00000400288	human	ensembl	74_37	+1	known	missense	c.2603	p.R868M	0.929	NULL	superfamily_Cyclin-like	-	no_errors	SFI1	HGNC	ENSG00000198089				54	0	0	46	8	14.8148
C22orf24	0	genome.wustl.edu	37	22	32334034	32334034	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	22	32334034	32334034	T	C	SNP	C22orf24	ENST00000543051	human	ensembl	74_37	-1	known	missense	c.220	p.T74A	0.000	NULL	NULL	-	no_errors	C22orf24	HGNC	ENSG00000128254				436	0	0	354	56	13.6585
HMOX1	0	genome.wustl.edu	37	22	35785929	35785929	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	22	35785929	35785929	C	T	SNP	HMOX1	ENST00000216117	human	ensembl	74_37	+1	known	missense	c.709	p.R237C	0.064	superfamily_Haem_Oase-like_multi-hlx,pirsf_Haem_Oase	pfam_Haem_Oase-like,superfamily_Haem_Oase-like_multi-hlx,pirsf_Haem_Oase,prints_Haem_Oase	-	no_errors	HMOX1	HGNC	ENSG00000100292				31	0	0	18	7	28
RBFOX2	0	genome.wustl.edu	37	22	36140245	36140245	+	Silent	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	22	36140245	36140245	C	T	SNP	RBFOX2	ENST00000414461	human	ensembl	74_37	-1	known	silent	c.1110	p.T370	1.000	pirsf_RNA-bd_Fox-1	pfam_RRM_dom,pfam_Fox-1_C_dom,smart_RRM_dom,pirsf_RNA-bd_Fox-1,pfscan_RRM_dom	-	no_errors	RBFOX2	HGNC	ENSG00000100320				49	0	0	31	10	24.3902
MYH9	0	genome.wustl.edu	37	22	36689461	36689461	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	22	36689461	36689461	C	T	SNP	MYH9	ENST00000216181	human	ensembl	74_37	-1	known	missense	c.4009	p.E1337K	1.000	pfam_Myosin_tail	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,superfamily_Regulat_G_prot_signal_superfam,superfamily_Prefoldin,superfamily_Myosin_S1_N,superfamily_STAT_TF_coiled-coil,superfamily_tRNA-bd_arm,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH9	HGNC	ENSG00000100345				141	0	0	119	28	19.0476
MYH9	0	genome.wustl.edu	37	22	36714301	36714301	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	22	36714301	36714301	C	T	SNP	MYH9	ENST00000216181	human	ensembl	74_37	-1	known	missense	c.1178	p.R393H	1.000	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,superfamily_Regulat_G_prot_signal_superfam,superfamily_Prefoldin,superfamily_Myosin_S1_N,superfamily_STAT_TF_coiled-coil,superfamily_tRNA-bd_arm,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH9	HGNC	ENSG00000100345				309	0	0	285	101	26.1658
MYH9	0	genome.wustl.edu	37	22	36714302	36714302	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	22	36714302	36714302	G	A	SNP	MYH9	ENST00000216181	human	ensembl	74_37	-1	known	missense	c.1177	p.R393C	0.982	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,superfamily_Regulat_G_prot_signal_superfam,superfamily_Prefoldin,superfamily_Myosin_S1_N,superfamily_STAT_TF_coiled-coil,superfamily_tRNA-bd_arm,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH9	HGNC	ENSG00000100345				312	0	0	283	103	26.6839
ELFN2	0	genome.wustl.edu	37	22	37769252	37769252	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	22	37769252	37769252	G	A	SNP	ELFN2	ENST00000402918	human	ensembl	74_37	-1	known	missense	c.2323	p.P775S	1.000	NULL	superfamily_Fibronectin_type3,smart_Leu-rich_rpt_typical-subtyp,pfscan_LPXTG_anchor	-	no_errors	ELFN2	HGNC	ENSG00000166897				76	0	0	58	27	31.7647
ANKRD54	0	genome.wustl.edu	37	22	38228694	38228694	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	22	38228694	38228694	G	A	SNP	ANKRD54	ENST00000215941	human	ensembl	74_37	-1	known	missense	c.778	p.R260C	0.883	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD54	HGNC	ENSG00000100124				112	0	0	84	13	13.4021
MGAT3	0	genome.wustl.edu	37	22	39884545	39884545	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	22	39884545	39884545	G	A	SNP	MGAT3	ENST00000341184	human	ensembl	74_37	+1	known	missense	c.1193	p.R398H	1.000	pfam_Glyco_trans_17	pfam_Glyco_trans_17	-	no_errors	MGAT3	HGNC	ENSG00000128268				85	0	0	45	21	31.8182
MIEF1	0	genome.wustl.edu	37	22	39909860	39909860	+	Silent	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	22	39909860	39909860	C	T	SNP	MIEF1	ENST00000325301	human	ensembl	74_37	+1	known	silent	c.924	p.L308	0.000	NULL	NULL	-	no_errors	MIEF1	HGNC	ENSG00000100335				139	0	0	69	43	38.3929
ENSG00000225528	0	genome.wustl.edu	37	22	40360563	40360563	+	RNA	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	22	40360563	40360563	G	A	SNP	ENSG00000225528	ENST00000424496	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.992	-	-	-	no_errors	RP3-370M22.8	Clone_based_vega_gene	ENSG00000225528				19	0	0	16	8	33.3333
SGSM3	0	genome.wustl.edu	37	22	40804113	40804113	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	22	40804113	40804113	C	T	SNP	SGSM3	ENST00000248929	human	ensembl	74_37	+1	known	missense	c.1618	p.R540C	0.999	superfamily_SH3_domain	pfam_Rab-GTPase-TBC_dom,pfam_Run,pfam_SH3_domain,pfam_SH3_2,superfamily_Rab-GTPase-TBC_dom,superfamily_SH3_domain,smart_Rab-GTPase-TBC_dom,smart_SH3_domain,smart_Run,pfscan_Run,pfscan_SH3_domain,pfscan_Rab-GTPase-TBC_dom	-	no_errors	SGSM3	HGNC	ENSG00000100359				93	0	0	51	18	26.087
SEPT3	0	genome.wustl.edu	37	22	42390663	42390663	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	22	42390663	42390663	T	C	SNP	SEPT3	ENST00000396426	human	ensembl	74_37	+1	known	missense	c.956	p.I319T	1.000	pfam_Cell_div_GTP-bd,pirsf_Septin	pfam_Cell_div_GTP-bd,pfam_Ribosome_biogen_GTPase_RsgA,pfam_AIG1,superfamily_P-loop_NTPase,pirsf_Septin,prints_Septin3	-	no_errors	SEPT3	HGNC	ENSG00000100167				92	0	0	105	9	7.89474
PPARA	0	genome.wustl.edu	37	22	46611192	46611192	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	22	46611192	46611192	G	T	SNP	PPARA	ENST00000262735	human	ensembl	74_37	+1	known	missense	c.331	p.G111C	1.000	pfam_Znf_hrmn_rcpt,smart_Znf_hrmn_rcpt,pfscan_Znf_hrmn_rcpt,prints_Znf_hrmn_rcpt	pfam_Znf_hrmn_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_1Cnucl_rcpt_A,prints_1Cnucl_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt	-	no_errors	PPARA	HGNC	ENSG00000186951				61	0	0	44	14	24.1379
PKDREJ	0	genome.wustl.edu	37	22	46655432	46655432	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	22	46655432	46655432	A	T	SNP	PKDREJ	ENST00000253255	human	ensembl	74_37	-1	known	missense	c.3788	p.V1263E	0.009	pfam_PLAT/LH2_dom,superfamily_Lipase_LipOase,smart_PLAT/LH2_dom,pfscan_PLAT/LH2_dom	pfam_PKD1_2_channel,pfam_PKD/REJ-like,pfam_PLAT/LH2_dom,pfam_Ion_trans_dom,superfamily_Lipase_LipOase,smart_GPS_dom,smart_PLAT/LH2_dom,pfscan_PLAT/LH2_dom,pfscan_REJ-like,prints_PKD_2	-	no_errors	PKDREJ	HGNC	ENSG00000130943				121	0	0	113	33	22.6027
CELSR1	0	genome.wustl.edu	37	22	46793716	46793716	+	Silent	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	22	46793716	46793716	G	A	SNP	CELSR1	ENST00000262738	human	ensembl	74_37	-1	known	silent	c.5556	p.N1852	0.999	superfamily_ConA-like_lec_gl_sf,pfscan_Laminin_G	pfam_Cadherin,pfam_DUF3497,pfam_Laminin_G,pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_EG-like_dom,pfam_EGF_laminin,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,smart_EGF_laminin,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_GPS_dom,pfscan_Laminin_G,pfscan_Cadherin,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_Cadherin,prints_GPCR_2_secretin-like	-	no_errors	CELSR1	HGNC	ENSG00000075275				29	0	0	12	6	33.3333
TBC1D22A	0	genome.wustl.edu	37	22	47308004	47308004	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	22	47308004	47308004	G	A	SNP	TBC1D22A	ENST00000337137	human	ensembl	74_37	+1	known	missense	c.935	p.R312H	1.000	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D22A	HGNC	ENSG00000054611				227	0	0	178	58	24.5763
BRD1	0	genome.wustl.edu	37	22	50169717	50169717	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	22	50169717	50169717	T	C	SNP	BRD1	ENST00000216267	human	ensembl	74_37	-1	known	missense	c.2819	p.Y940C	1.000	pfam_PWWP_dom,smart_PWWP_dom,pfscan_PWWP_dom	pfam_Enhancer_polycomb-like_N,pfam_Bromodomain,pfam_PWWP_dom,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_Bromodomain,smart_PWWP_dom,prints_Bromodomain,pfscan_PWWP_dom,pfscan_Znf_PHD-finger,pfscan_Bromodomain	-	no_errors	BRD1	HGNC	ENSG00000100425				30	0	0	23	15	39.4737
BRD1	0	genome.wustl.edu	37	22	50197979	50197979	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	22	50197979	50197979	A	G	SNP	BRD1	ENST00000216267	human	ensembl	74_37	-1	known	missense	c.1397	p.I466T	1.000	NULL	pfam_Enhancer_polycomb-like_N,pfam_Bromodomain,pfam_PWWP_dom,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_Bromodomain,smart_PWWP_dom,prints_Bromodomain,pfscan_PWWP_dom,pfscan_Znf_PHD-finger,pfscan_Bromodomain	-	no_errors	BRD1	HGNC	ENSG00000100425				88	0	0	73	17	18.8889
ZBED4	0	genome.wustl.edu	37	22	50277790	50277790	+	Silent	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	22	50277790	50277790	C	T	SNP	ZBED4	ENST00000216268	human	ensembl	74_37	+1	known	silent	c.480	p.H160	0.998	pfam_Znf_BED_prd,smart_Znf_BED_prd,pfscan_Znf_BED_prd	pfam_Znf_BED_prd,pfam_HATC_dom_C,superfamily_RNaseH-like_dom,smart_Znf_BED_prd,pfscan_Znf_BED_prd	-	no_errors	ZBED4	HGNC	ENSG00000100426				73	0	0	54	25	31.6456
TTLL8	0	genome.wustl.edu	37	22	50470360	50470360	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	22	50470360	50470360	C	T	SNP	TTLL8	ENST00000266182	human	ensembl	74_37	-1	known	missense	c.1462	p.A488T	0.997	pfam_TTL/TTLL_fam	pfam_TTL/TTLL_fam	-	no_errors	TTLL8	HGNC	ENSG00000138892				33	0	0	20	9	31.0345
PLXNB2	0	genome.wustl.edu	37	22	50717305	50717305	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	22	50717305	50717305	T	A	SNP	PLXNB2	ENST00000359337	human	ensembl	74_37	-1	known	missense	c.4525	p.R1509W	1.000	pfam_Plexin_cytoplasmic_RasGAP_dom,superfamily_Rho_GTPase_activation_prot	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_IPT,pfam_Semap_dom,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_IPT,pfscan_Semap_dom	-	no_errors	PLXNB2	HGNC	ENSG00000196576				35	0	0	32	3	8.57143
NFKBIZ	0	genome.wustl.edu	37	3	101575980	101575980	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	3	101575980	101575980	C	T	SNP	NFKBIZ	ENST00000326172	human	ensembl	74_37	+1	known	missense	c.1888	p.R630C	1.000	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	NFKBIZ	HGNC	ENSG00000144802				233	0	0	165	48	22.5352
ZPLD1	0	genome.wustl.edu	37	3	102171933	102171933	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	3	102171933	102171933	A	T	SNP	ZPLD1	ENST00000306176	human	ensembl	74_37	+1	known	missense	c.325	p.I109F	1.000	pfam_ZP_dom,smart_ZP_dom,pfscan_ZP_dom	pfam_ZP_dom,smart_ZP_dom,pfscan_ZP_dom	-	no_errors	ZPLD1	HGNC	ENSG00000170044				62	0	0	82	6	6.81818
MYH15	0	genome.wustl.edu	37	3	108220600	108220600	+	Silent	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	3	108220600	108220600	G	A	SNP	MYH15	ENST00000273353	human	ensembl	74_37	-1	known	silent	c.358	p.L120	1.000	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,superfamily_Lambda_DNA-bd_dom,smart_Myosin_head_motor_dom,prints_Myosin_head_motor_dom	-	no_errors	MYH15	HGNC	ENSG00000144821				138	0	0	80	35	30.4348
SLC6A1	0	genome.wustl.edu	37	3	11059010	11059010	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	3	11059010	11059010	C	T	SNP	SLC6A1	ENST00000287766	human	ensembl	74_37	+1	known	missense	c.113	p.A38V	0.441	NULL	pfam_Na/ntran_symport,prints_Na/ntran_symport,prints_Na/ntran_symport_GABA_GAT1,pfscan_Na/ntran_symport	-	no_errors	SLC6A1	HGNC	ENSG00000157103				129	0	0	87	33	27.5
ATG7	0	genome.wustl.edu	37	3	11389392	11389392	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	3	11389392	11389392	G	T	SNP	ATG7	ENST00000354449	human	ensembl	74_37	+1	known	missense	c.1167	p.K389N	1.000	pfam_ThiF_NAD_FAD-bd,superfamily_Molybdenum_cofac_synth_MoeB,tigrfam_Atg7	pfam_ThiF_NAD_FAD-bd,superfamily_Molybdenum_cofac_synth_MoeB,tigrfam_Atg7	-	no_errors	ATG7	HGNC	ENSG00000197548				103	0	0	77	28	26.6667
STXBP5L	0	genome.wustl.edu	37	3	121001127	121001127	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	3	121001127	121001127	C	T	SNP	STXBP5L	ENST00000273666	human	ensembl	74_37	+1	known	missense	c.2125	p.R709C	1.000	NULL	pfam_LLGL2,pfam_WD40_repeat,pfam_Lgl_C_dom,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,pfscan_Synaptobrevin,prints_Lethal2_giant	-	no_errors	STXBP5L	HGNC	ENSG00000145087				67	0	0	55	18	24.6575
HSPBAP1	0	genome.wustl.edu	37	3	122474162	122474162	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	3	122474162	122474162	C	T	SNP	HSPBAP1	ENST00000306103	human	ensembl	74_37	-1	known	missense	c.686	p.R229H	0.997	pfam_JmjC_dom,smart_JmjC_dom,pfscan_JmjC_dom	pfam_JmjC_dom,smart_JmjC_dom,pfscan_JmjC_dom,prints_HSPB1-associated_protein_1	-	no_errors	HSPBAP1	HGNC	ENSG00000169087				84	0	0	79	30	27.5229
ALDH1L1	0	genome.wustl.edu	37	3	125824741	125824741	+	Silent	SNP	G	G	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	3	125824741	125824741	G	T	SNP	ALDH1L1	ENST00000393434	human	ensembl	74_37	-1	known	silent	c.2481	p.A827	1.000	pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH,pirsf_10_FTHF_DH	pfam_Aldehyde_DH_dom,pfam_Formyl_transf_N,pfam_Formyl_trans_C,pfam_Acyl_carrier_prot-like,superfamily_Ald_DH/histidinol_DH,superfamily_Formyl_transf_N,superfamily_Formyl_transferase_C-like,superfamily_Acyl_carrier_prot-like,pirsf_10_FTHF_DH,pfscan_Acyl_carrier_prot-like	-	no_errors	ALDH1L1	HGNC	ENSG00000144908				79	0	0	58	14	19.4444
CHST13	0	genome.wustl.edu	37	3	126261003	126261003	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	3	126261003	126261003	G	A	SNP	CHST13	ENST00000319340	human	ensembl	74_37	+1	known	missense	c.608	p.R203H	0.997	pfam_Sulfotransferase	pfam_Sulfotransferase	-	no_errors	CHST13	HGNC	ENSG00000180767				16	0	0	11	5	31.25
PODXL2	0	genome.wustl.edu	37	3	127379771	127379771	+	Silent	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	3	127379771	127379771	C	T	SNP	PODXL2	ENST00000342480	human	ensembl	74_37	+1	known	silent	c.900	p.H300	0.001	NULL	pfam_CD34/Podocalyxin	-	no_errors	PODXL2	HGNC	ENSG00000114631				52	0	0	41	16	28.0702
RPN1	0	genome.wustl.edu	37	3	128344441	128344441	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	3	128344441	128344441	G	A	SNP	RPN1	ENST00000296255	human	ensembl	74_37	-1	known	missense	c.1331	p.A444V	0.988	pfam_Ribophorin_I	pfam_Ribophorin_I	-	no_errors	RPN1	HGNC	ENSG00000163902				324	1	0.307692	195	74	27.5093
CAND2	0	genome.wustl.edu	37	3	12858373	12858373	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	3	12858373	12858373	C	T	SNP	CAND2	ENST00000456430	human	ensembl	74_37	+1	known	missense	c.1942	p.P648S	1.000	superfamily_ARM-type_fold	pfam_TATA-bd_TIP120,pfam_HEAT,superfamily_ARM-type_fold	-	no_errors	CAND2	HGNC	ENSG00000144712				123	0	0	104	28	21.2121
IFT122	0	genome.wustl.edu	37	3	129231177	129231177	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	3	129231177	129231177	G	A	SNP	IFT122	ENST00000296266	human	ensembl	74_37	+1	known	missense	c.3062	p.R1021H	0.993	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	IFT122	HGNC	ENSG00000163913				240	1	0.414938	191	62	24.5059
EPHB1	0	genome.wustl.edu	37	3	134920469	134920469	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	3	134920469	134920469	G	A	SNP	EPHB1	ENST00000398015	human	ensembl	74_37	+1	known	missense	c.2284	p.D762N	1.000	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt_N_dom,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_dom	-	no_errors	EPHB1	HGNC	ENSG00000154928				99	0	0	114	35	23.4899
EPHB1	0	genome.wustl.edu	37	3	134967254	134967254	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	3	134967254	134967254	C	T	SNP	EPHB1	ENST00000398015	human	ensembl	74_37	+1	known	missense	c.2593	p.R865W	1.000	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt_N_dom,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_dom	-	no_errors	EPHB1	HGNC	ENSG00000154928				59	0	0	41	16	28.0702
PRR23C	0	genome.wustl.edu	37	3	138762837	138762837	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	3	138762837	138762837	C	T	SNP	PRR23C	ENST00000413199	human	ensembl	74_37	-1	known	missense	c.626	p.R209H	0.000	pfam_UPF0572	pfam_UPF0572	-	no_errors	PRR23C	HGNC	ENSG00000233701				23	0	0	16	6	27.2727
TMEM43	0	genome.wustl.edu	37	3	14175298	14175298	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	3	14175298	14175298	T	C	SNP	TMEM43	ENST00000306077	human	ensembl	74_37	+1	known	missense	c.572	p.F191S	1.000	pfam_TMEM43_fam	pfam_TMEM43_fam	-	no_errors	TMEM43	HGNC	ENSG00000170876				207	0	0	168	55	24.6637
ZIC4	0	genome.wustl.edu	37	3	147113821	147113821	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	3	147113821	147113821	G	A	SNP	ZIC4	ENST00000525172	human	ensembl	74_37	-1	known	missense	c.656	p.A219V	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZIC4	HGNC	ENSG00000174963				224	0	0	173	55	24.1228
MED12L	0	genome.wustl.edu	37	3	151082912	151082912	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	3	151082912	151082912	C	A	SNP	MED12L	ENST00000474524	human	ensembl	74_37	+1	known	missense	c.2998	p.L1000I	1.000	NULL	pfam_Mediator_Med12_LCEWAV,pfam_Mediator_Med12,pfam_Mediator_Med12_catenin-bd	-	no_errors	MED12L	HGNC	ENSG00000144893				305	1	0.326797	210	76	26.5734
PLCH1	0	genome.wustl.edu	37	3	155210547	155210547	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	3	155210547	155210547	G	C	SNP	PLCH1	ENST00000340059	human	ensembl	74_37	-1	known	missense	c.2242	p.P748A	1.000	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,pfam_C2_dom,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_dom,smart_Pleckstrin_homology,smart_EF_hand_dom,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_dom,pfscan_EF_hand_dom,pfscan_C2_dom,pfscan_Pleckstrin_homology,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y,prints_Pinositol_PLipase_C	-	no_errors	PLCH1	HGNC	ENSG00000114805				105	0	0	91	8	8.08081
VEPH1	0	genome.wustl.edu	37	3	157004431	157004431	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	3	157004431	157004431	T	G	SNP	VEPH1	ENST00000362010	human	ensembl	74_37	-1	known	missense	c.2043	p.E681D	1.000	NULL	pfam_Pleckstrin_homology,superfamily_ARM-type_fold,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	VEPH1	HGNC	ENSG00000197415				181	0	0	142	34	19.3182
GOLIM4	0	genome.wustl.edu	37	3	167745560	167745560	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	3	167745560	167745560	G	A	SNP	GOLIM4	ENST00000470487	human	ensembl	74_37	-1	known	missense	c.1579	p.R527C	0.002	NULL	NULL	-	no_errors	GOLIM4	HGNC	ENSG00000173905				273	0	0	195	74	27.5093
CLDN11	0	genome.wustl.edu	37	3	170140971	170140971	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	3	170140971	170140971	G	A	SNP	CLDN11	ENST00000064724	human	ensembl	74_37	+1	known	missense	c.247	p.A83T	1.000	pfam_PMP22/EMP/MP20/Claudin,prints_Claudin	pfam_PMP22/EMP/MP20/Claudin,prints_Claudin11,prints_Claudin	-	no_errors	CLDN11	HGNC	ENSG00000013297				302	1	0.330033	238	71	22.9773
NLGN1	0	genome.wustl.edu	37	3	173322759	173322759	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	3	173322759	173322759	G	A	SNP	NLGN1	ENST00000401917	human	ensembl	74_37	+1	known	missense	c.371	p.G124D	1.000	pfam_CarbesteraseB	pfam_CarbesteraseB,pfam_AB_hydrolase_3,prints_Neuroligin	-	no_errors	NLGN1	HGNC	ENSG00000169760				275	0	0	226	64	22.069
YEATS2	0	genome.wustl.edu	37	3	183521871	183521871	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	3	183521871	183521871	G	A	SNP	YEATS2	ENST00000305135	human	ensembl	74_37	+1	known	missense	c.3679	p.A1227T	0.999	NULL	pfam_YEATS,pfscan_YEATS	-	no_errors	YEATS2	HGNC	ENSG00000163872				198	0	0	205	39	15.9836
SATB1	0	genome.wustl.edu	37	3	18391030	18391030	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	3	18391030	18391030	G	A	SNP	SATB1	ENST00000417717	human	ensembl	74_37	-1	known	nonsense	c.2020	p.R674*	1.000	superfamily_Homeodomain-like,pfscan_Homeobox_dom	pfam_Hmoeo_CUT,pfam_Homeobox_dom,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Hmoeo_CUT	-	no_errors	SATB1	HGNC	ENSG00000182568				116	0	0	79	28	26.1682
ECE2	0	genome.wustl.edu	37	3	184008885	184008885	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	3	184008885	184008885	C	T	SNP	ECE2	ENST00000402825	human	ensembl	74_37	+1	known	missense	c.2246	p.A749V	0.995	pfam_Peptidase_M13_C	pfam_Peptidase_M13_N,pfam_Peptidase_M13_C,pfam_Methyltransf_11,prints_Peptidase_M13_C	-	no_errors	ECE2	HGNC	ENSG00000145194				117	0	0	101	6	5.60748
PSMD2	0	genome.wustl.edu	37	3	184022156	184022156	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	3	184022156	184022156	G	A	SNP	PSMD2	ENST00000310118	human	ensembl	74_37	+1	known	missense	c.1516	p.G506R	1.000	pfam_Proteasome/cyclosome_rpt,superfamily_ARM-type_fold,pirsf_26S_Psome_Rpn1	pfam_Proteasome/cyclosome_rpt,superfamily_ARM-type_fold,pirsf_26S_Psome_Rpn1	-	no_errors	PSMD2	HGNC	ENSG00000175166				187	0	0	135	42	23.7288
EIF4G1	0	genome.wustl.edu	37	3	184040475	184040475	+	Silent	SNP	T	T	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	3	184040475	184040475	T	C	SNP	EIF4G1	ENST00000352767	human	ensembl	74_37	+1	known	silent	c.1773	p.A591	0.133	NULL	pfam_MIF4G-like_typ-3,pfam_Initiation_fac_eIF4g_MI,pfam_W2_domain,superfamily_ARM-type_fold,smart_MIF4G-like_typ-3,smart_Initiation_fac_eIF4g_MI,smart_W2_domain	-	no_errors	EIF4G1	HGNC	ENSG00000114867				75	0	0	41	14	25.4545
EPHB3	0	genome.wustl.edu	37	3	184298195	184298195	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	3	184298195	184298195	C	A	SNP	EPHB3	ENST00000330394	human	ensembl	74_37	+1	known	missense	c.2178	p.N726K	1.000	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,pfam_Tyr-kin_ephrin_A/B_rcpt-like,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt_N_dom,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_dom	-	no_errors	EPHB3	HGNC	ENSG00000182580				99	0	0	75	24	24.2424
SATB1	0	genome.wustl.edu	37	3	18436246	18436246	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	3	18436246	18436246	G	T	SNP	SATB1	ENST00000417717	human	ensembl	74_37	-1	known	missense	c.914	p.P305H	1.000	NULL	pfam_Hmoeo_CUT,pfam_Homeobox_dom,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Hmoeo_CUT	-	no_errors	SATB1	HGNC	ENSG00000182568				136	0	0	89	32	26.4463
VPS8	0	genome.wustl.edu	37	3	184542471	184542471	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	3	184542471	184542471	G	T	SNP	VPS8	ENST00000287546	human	ensembl	74_37	+1	known	missense	c.51	p.K17N	0.082	NULL	superfamily_Quinonprotein_ADH-like_supfam,superfamily_ARM-type_fold,smart_Znf_RING,pfscan_Znf_RING,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	VPS8	HGNC	ENSG00000156931				63	0	0	46	12	20.6897
VPS8	0	genome.wustl.edu	37	3	184717545	184717545	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	3	184717545	184717545	G	T	SNP	VPS8	ENST00000287546	human	ensembl	74_37	+1	known	missense	c.3898	p.G1300C	0.145	smart_Znf_RING,pfscan_Znf_RING	superfamily_Quinonprotein_ADH-like_supfam,superfamily_ARM-type_fold,smart_Znf_RING,pfscan_Znf_RING,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	VPS8	HGNC	ENSG00000156931				31	0	0	25	9	26.4706
SNORA81	0	genome.wustl.edu	37	3	186504535	186504535	+	RNA	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	3	186504535	186504535	G	A	SNP	SNORA81	ENST00000408493	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	SNORA81	HGNC	ENSG00000221420				97	0	0	66	25	27.4725
ATP13A5	0	genome.wustl.edu	37	3	193048947	193048947	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	3	193048947	193048947	T	G	SNP	ATP13A5	ENST00000342358	human	ensembl	74_37	-1	known	missense	c.1426	p.M476L	0.992	tigrfam_ATPase_P-typ_Cation_typ_V	pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_Cation_typ_V,pfam_ATPase_P-typ_cation-transptr_N,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Cation_typ_V,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP13A5	HGNC	ENSG00000187527				157	0	0	126	37	22.6994
OPA1	0	genome.wustl.edu	37	3	193361319	193361319	+	Silent	SNP	T	T	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	3	193361319	193361319	T	C	SNP	OPA1	ENST00000361510	human	ensembl	74_37	+1	known	silent	c.1380	p.T460	0.997	pfam_Dynamin_GTPase,superfamily_P-loop_NTPase,smart_Dynamin_GTPase,prints_Dynamin_SF	pfam_Dynamin_GTPase,superfamily_P-loop_NTPase,smart_Dynamin_GTPase,prints_Dynamin_SF	-	no_errors	OPA1	HGNC	ENSG00000198836				97	0	0	87	14	13.8614
CPN2	0	genome.wustl.edu	37	3	194063301	194063301	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	3	194063301	194063301	G	A	SNP	CPN2	ENST00000323830	human	ensembl	74_37	-1	known	missense	c.131	p.P44L	0.998	smart_LRR-contain_N	pfam_Leu-rich_rpt,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	CPN2	HGNC	ENSG00000178772				125	0	0	70	30	30
TCTEX1D2	0	genome.wustl.edu	37	3	196018210	196018210	+	Silent	SNP	A	A	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	3	196018210	196018210	A	G	SNP	TCTEX1D2	ENST00000325318	human	ensembl	74_37	-1	known	silent	c.417	p.C139	1.000	pfam_Tctex	pfam_Tctex	-	no_errors	TCTEX1D2	HGNC	ENSG00000213123				99	0	0	86	5	5.49451
TRIM71	0	genome.wustl.edu	37	3	32915308	32915308	+	Splice_Site	SNP	A	A	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	3	32915308	32915308	A	G	SNP	TRIM71	ENST00000383763	human	ensembl	74_37	+1	known	splice_site	c.853-2	e2-2	1.000	-	-	-	no_errors	TRIM71	HGNC	ENSG00000206557				728	1	0.137174	526	187	26.2272
STAC	0	genome.wustl.edu	37	3	36484874	36484874	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	3	36484874	36484874	T	G	SNP	STAC	ENST00000273183	human	ensembl	74_37	+1	known	missense	c.130	p.S44A	1.000	NULL	pfam_SH3_domain,pfam_SH3_2,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_SH3_domain,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_SH3_domain,pfscan_SH3_domain,pfscan_Prot_Kinase_C-like_PE/DAG-bd,prints_Spectrin_alpha_SH3,prints_SH3_domain	-	no_errors	STAC	HGNC	ENSG00000144681				67	0	0	40	8	16.6667
STAC	0	genome.wustl.edu	37	3	36484922	36484922	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	3	36484922	36484922	T	G	SNP	STAC	ENST00000273183	human	ensembl	74_37	+1	known	missense	c.178	p.F60V	1.000	NULL	pfam_SH3_domain,pfam_SH3_2,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_SH3_domain,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_SH3_domain,pfscan_SH3_domain,pfscan_Prot_Kinase_C-like_PE/DAG-bd,prints_Spectrin_alpha_SH3,prints_SH3_domain	-	no_errors	STAC	HGNC	ENSG00000144681				100	0	0	59	13	18.0556
DLEC1	0	genome.wustl.edu	37	3	38163883	38163883	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	3	38163883	38163883	A	G	SNP	DLEC1	ENST00000452631	human	ensembl	74_37	+1	known	missense	c.5257	p.M1753V	0.000	NULL	superfamily_PapD-like	-	no_errors	DLEC1	HGNC	ENSG00000008226				113	0	0	61	19	23.75
SLC22A14	0	genome.wustl.edu	37	3	38357177	38357177	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	3	38357177	38357177	G	A	SNP	SLC22A14	ENST00000273173	human	ensembl	74_37	+1	known	missense	c.1507	p.A503T	0.010	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC22A14	HGNC	ENSG00000144671				208	0	0	154	73	32.1586
SCN5A	0	genome.wustl.edu	37	3	38651314	38651314	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	3	38651314	38651314	C	T	SNP	SCN5A	ENST00000333535	human	ensembl	74_37	-1	known	missense	c.845	p.R282H	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_Na_trans_assoc,pfam_DUF3451,pfam_PKD1_2_channel,prints_Na_channel_a5su,prints_Na_channel_asu	-	no_errors	SCN5A	HGNC	ENSG00000183873				84	0	0	54	17	23.9437
XIRP1	0	genome.wustl.edu	37	3	39230437	39230437	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	3	39230437	39230437	T	G	SNP	XIRP1	ENST00000340369	human	ensembl	74_37	-1	known	missense	c.500	p.E167A	0.097	NULL	pfam_Actin-binding_Xin_repeat	-	no_errors	XIRP1	HGNC	ENSG00000168334				52	0	0	36	8	18.1818
SEC22C	0	genome.wustl.edu	37	3	42594846	42594846	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	3	42594846	42594846	A	G	SNP	SEC22C	ENST00000264454	human	ensembl	74_37	-1	known	missense	c.806	p.L269P	1.000	NULL	superfamily_Longin-like_dom,pfscan_Longin_dom	-	no_errors	SEC22C	HGNC	ENSG00000093183				95	0	0	76	10	11.6279
ZBTB47	0	genome.wustl.edu	37	3	42700986	42700986	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	3	42700986	42700986	G	T	SNP	ZBTB47	ENST00000232974	human	ensembl	74_37	+1	known	missense	c.1139	p.R380L	0.940	NULL	pfam_Znf_C2H2,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB47	HGNC	ENSG00000114853				11	0	0	12	3	20
NBEAL2	0	genome.wustl.edu	37	3	47030358	47030358	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	3	47030358	47030358	C	T	SNP	NBEAL2	ENST00000450053	human	ensembl	74_37	+1	known	missense	c.167	p.P56L	0.954	NULL	pfam_BEACH_dom,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_ConA-like_lec_gl_sf,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	NBEAL2	HGNC	ENSG00000160796				72	0	0	68	17	20
SCAP	0	genome.wustl.edu	37	3	47466983	47466983	+	Silent	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	3	47466983	47466983	G	A	SNP	SCAP	ENST00000265565	human	ensembl	74_37	-1	known	silent	c.1029	p.L343	0.998	pfam_Patched,pfscan_SSD	pfam_Patched,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_SSD,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	SCAP	HGNC	ENSG00000114650				66	0	0	46	21	31.3433
PLXNB1	0	genome.wustl.edu	37	3	48461166	48461166	+	Silent	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	3	48461166	48461166	C	T	SNP	PLXNB1	ENST00000296440	human	ensembl	74_37	-1	known	silent	c.2529	p.T843	0.967	NULL	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_IPT,pfam_Semap_dom,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_IPT,pfscan_Semap_dom	-	no_errors	PLXNB1	HGNC	ENSG00000164050				11	0	0	14	2	12.5
UQCRC1	0	genome.wustl.edu	37	3	48638477	48638477	+	Silent	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	3	48638477	48638477	C	T	SNP	UQCRC1	ENST00000203407	human	ensembl	74_37	-1	known	silent	c.897	p.P299	0.044	pfam_Peptidase_M16_C,superfamily_Metalloenz_LuxS/M16	pfam_Pept_M16_N,pfam_Peptidase_M16_C,superfamily_Metalloenz_LuxS/M16	-	no_errors	UQCRC1	HGNC	ENSG00000010256				48	0	0	26	11	29.7297
P4HTM	0	genome.wustl.edu	37	3	49042575	49042575	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	3	49042575	49042575	T	C	SNP	P4HTM	ENST00000343546	human	ensembl	74_37	+1	known	missense	c.1169	p.M390T	0.000	smart_Pro_4_hyd_alph	pfam_Oxoglu/Fe-dep_dioxygenase,smart_Pro_4_hyd_alph	-	no_errors	P4HTM	HGNC	ENSG00000178467				78	0	0	42	22	34.375
QRICH1	0	genome.wustl.edu	37	3	49094841	49094841	+	Silent	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	3	49094841	49094841	C	T	SNP	QRICH1	ENST00000357496	human	ensembl	74_37	-1	known	silent	c.792	p.P264	0.799	NULL	pfam_DUF3504,superfamily_DEATH-like_dom	-	no_errors	QRICH1	HGNC	ENSG00000198218				110	0	0	65	23	26.1364
USP19	0	genome.wustl.edu	37	3	49149205	49149205	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	3	49149205	49149205	C	T	SNP	USP19	ENST00000398888	human	ensembl	74_37	-1	known	missense	c.2636	p.R879H	1.000	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	pfam_Peptidase_C19/C67,pfam_Znf_MYND,pfam_CS_dom,superfamily_HSP20-like_chaperone,pfscan_CS_dom,pfscan_Znf_MYND,pfscan_Peptidase_C19/C67	-	no_errors	USP19	HGNC	ENSG00000172046				86	0	0	88	10	10.2041
BSN	0	genome.wustl.edu	37	3	49699821	49699821	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	3	49699821	49699821	C	A	SNP	BSN	ENST00000296452	human	ensembl	74_37	+1	known	missense	c.10543	p.R3515S	0.976	NULL	pfam_Znf_piccolo,superfamily_Znf_FYVE_PHD	-	no_errors	BSN	HGNC	ENSG00000164061				56	0	0	30	14	31.8182
MON1A	0	genome.wustl.edu	37	3	49949267	49949267	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	3	49949267	49949267	G	A	SNP	MON1A	ENST00000296473	human	ensembl	74_37	-1	known	missense	c.596	p.T199M	0.996	NULL	pfam_Vacuolar_fusion_protein_MON1,superfamily_Longin-like_dom,prints_Vacuolar_fusion_protein_MON1	-	no_errors	MON1A	HGNC	ENSG00000164077				118	0	0	68	31	31.3131
SEMA3F	0	genome.wustl.edu	37	3	50211525	50211525	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	3	50211525	50211525	T	C	SNP	SEMA3F	ENST00000002829	human	ensembl	74_37	+1	known	missense	c.314	p.V105A	0.985	pfam_Semap_dom,superfamily_Semap_dom,smart_Semap_dom,pfscan_Semap_dom	pfam_Semap_dom,superfamily_Semap_dom,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_Ig_sub,smart_Ig_sub2,pfscan_Semap_dom,pfscan_Ig-like_dom	-	no_errors	SEMA3F	HGNC	ENSG00000001617				91	0	0	61	8	11.5942
GNAI2	0	genome.wustl.edu	37	3	50289879	50289879	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	3	50289879	50289879	C	T	SNP	GNAI2	ENST00000313601	human	ensembl	74_37	+1	known	missense	c.212	p.A71V	0.998	pfam_Gprotein_alpha_su,superfamily_P-loop_NTPase,superfamily_GproteinA_insert,smart_Gprotein_alpha_su,prints_Fungi_Gprotein_alpha	pfam_Gprotein_alpha_su,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,superfamily_GproteinA_insert,smart_Gprotein_alpha_su,prints_Gprotein_alpha_su,prints_Gprotein_alpha_I,prints_Fungi_Gprotein_alpha	-	no_errors	GNAI2	HGNC	ENSG00000114353				53	0	0	27	16	37.2093
CACNA2D2	0	genome.wustl.edu	37	3	50418494	50418494	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	3	50418494	50418494	C	T	SNP	CACNA2D2	ENST00000435965	human	ensembl	74_37	-1	known	missense	c.716	p.R239H	0.998	pfam_VWA_N	pfam_VWA_N,pfam_VDCC_a2/dsu,pfam_Cache_domain,pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	-	no_errors	CACNA2D2	HGNC	ENSG00000007402				216	0	0	160	67	29.5154
GRM2	0	genome.wustl.edu	37	3	51746690	51746690	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	3	51746690	51746690	G	A	SNP	GRM2	ENST00000395052	human	ensembl	74_37	+1	known	missense	c.652	p.E218K	1.000	pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I,prints_GPCR_3	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_GPCR_3_9-Cys_dom,superfamily_Peripla_BP_I,pfscan_GPCR_3_C,prints_GPCR_3,prints_GPCR_3_mtglu_rcpt_2,prints_GPCR_3_mtglu_rcpt,prints_GPCR_3_mtglu_rcpt_3,prints_GPCR_3_GABA_rcpt_B	-	no_errors	GRM2	HGNC	ENSG00000164082				104	0	0	64	23	26.4368
PCBP4	0	genome.wustl.edu	37	3	51994171	51994171	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	3	51994171	51994171	G	A	SNP	PCBP4	ENST00000395014	human	ensembl	74_37	-1	known	missense	c.319	p.R107W	0.002	smart_KH_dom	pfam_KH_dom_type_1,smart_KH_dom,pfscan_KH_dom_type_1	-	no_errors	PCBP4	HGNC	ENSG00000090097				109	0	0	82	34	29.3103
PCBP4	0	genome.wustl.edu	37	3	51994571	51994571	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	3	51994571	51994571	C	T	SNP	PCBP4	ENST00000395014	human	ensembl	74_37	-1	known	missense	c.124	p.V42I	0.994	NULL	pfam_KH_dom_type_1,smart_KH_dom,pfscan_KH_dom_type_1	-	no_errors	PCBP4	HGNC	ENSG00000090097				118	0	0	88	14	13.7255
ABHD14B	0	genome.wustl.edu	37	3	52004061	52004061	+	Silent	SNP	G	G	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	3	52004061	52004061	G	T	SNP	ABHD14B	ENST00000361143	human	ensembl	74_37	-1	known	silent	c.351	p.S117	0.690	NULL	NULL	-	no_errors	ABHD14B	HGNC	ENSG00000114779				89	0	0	68	20	22.7273
DNAH1	0	genome.wustl.edu	37	3	52379598	52379598	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	3	52379598	52379598	C	T	SNP	DNAH1	ENST00000420323	human	ensembl	74_37	+1	known	missense	c.1532	p.T511M	0.106	NULL	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase	-	no_errors	DNAH1	HGNC	ENSG00000114841				21	0	0	7	5	41.6667
CACNA1D	0	genome.wustl.edu	37	3	53781379	53781379	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	3	53781379	53781379	G	A	SNP	CACNA1D	ENST00000288139	human	ensembl	74_37	+1	known	missense	c.3278	p.R1093H	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCCAlpha1,prints_VDCC_L_a1su,prints_LVDCC_a1dsu	-	no_errors	CACNA1D	HGNC	ENSG00000157388				145	0	0	110	51	31.677
FLNB	0	genome.wustl.edu	37	3	58134519	58134519	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	3	58134519	58134519	G	A	SNP	FLNB	ENST00000295956	human	ensembl	74_37	+1	known	missense	c.6031	p.G2011S	1.000	pfam_Filamin/ABP280_repeat-like,superfamily_Ig_E-set,smart_Filamin,pfscan_Filamin/ABP280_repeat-like	pfam_Filamin/ABP280_repeat-like,pfam_CH-domain,superfamily_CH-domain,superfamily_Ig_E-set,smart_CH-domain,smart_Filamin,pfscan_CH-domain,pfscan_Filamin/ABP280_repeat-like	-	no_errors	FLNB	HGNC	ENSG00000136068				97	0	0	71	37	34.2593
GRM7	0	genome.wustl.edu	37	3	6903533	6903533	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	3	6903533	6903533	T	C	SNP	GRM7	ENST00000402647	human	ensembl	74_37	+1	known	missense	c.458	p.V153A	1.000	pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I,prints_GPCR_3	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_GPCR_3_9-Cys_dom,superfamily_Peripla_BP_I,pfscan_GPCR_3_C,prints_GPCR_3,prints_GPCR_3_mtglu_rcpt_7,prints_GPCR_3_mtglu_rcpt,prints_GPCR_3_mtglu_rcpt_4	-	no_errors	GRM7	HGNC	ENSG00000196277				78	0	0	64	13	16.8831
LMOD3	0	genome.wustl.edu	37	3	69168508	69168508	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	3	69168508	69168508	C	T	SNP	LMOD3	ENST00000420581	human	ensembl	74_37	-1	known	missense	c.998	p.C333Y	1.000	NULL	pfam_Tropomodulin	-	no_errors	LMOD3	HGNC	ENSG00000163380				345	0	0	255	83	24.5562
LMOD3	0	genome.wustl.edu	37	3	69171477	69171477	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	3	69171477	69171477	C	T	SNP	LMOD3	ENST00000420581	human	ensembl	74_37	-1	known	missense	c.61	p.D21N	1.000	pfam_Tropomodulin	pfam_Tropomodulin	-	no_errors	LMOD3	HGNC	ENSG00000163380				26	0	0	16	7	30.4348
GRM7	0	genome.wustl.edu	37	3	7621037	7621037	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	3	7621037	7621037	C	T	SNP	GRM7	ENST00000402647	human	ensembl	74_37	+1	known	missense	c.2444	p.A815V	0.999	pfam_GPCR_3_C,pfscan_GPCR_3_C	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_GPCR_3_9-Cys_dom,superfamily_Peripla_BP_I,pfscan_GPCR_3_C,prints_GPCR_3,prints_GPCR_3_mtglu_rcpt_7,prints_GPCR_3_mtglu_rcpt,prints_GPCR_3_mtglu_rcpt_4	-	no_errors	GRM7	HGNC	ENSG00000196277				36	0	0	14	6	30
ROBO1	0	genome.wustl.edu	37	3	79174622	79174622	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	3	79174622	79174622	A	C	SNP	ROBO1	ENST00000464233	human	ensembl	74_37	-1	known	missense	c.156	p.N52K	1.000	NULL	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	ROBO1	HGNC	ENSG00000169855				27	0	0	27	9	25
ADH4	0	genome.wustl.edu	37	4	100052797	100052797	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	4	100052797	100052797	T	G	SNP	ADH4	ENST00000423445	human	ensembl	74_37	-1	known	missense	c.758	p.K253T	1.000	pfam_ADH_C,smart_PKS_ER	pfam_ADH_C,pfam_ADH_GroES-like,superfamily_GroES-like,smart_PKS_ER	-	no_errors	ADH4	HGNC	ENSG00000198099				114	0	0	115	9	7.25806
MTTP	0	genome.wustl.edu	37	4	100515985	100515985	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	4	100515985	100515985	C	T	SNP	MTTP	ENST00000265517	human	ensembl	74_37	+1	known	missense	c.854	p.T285M	0.000	pfam_Lipid_transpt_N,superfamily_Vitellinogen_superhlx,smart_Lipid_transpt_N,pfscan_Lipid_transpt_N	pfam_Lipid_transpt_N,superfamily_Vitellinogen_superhlx,superfamily_Lipid_transp_b-sht_shell,smart_Lipid_transpt_N,pfscan_Lipid_transpt_N	-	no_errors	MTTP	HGNC	ENSG00000138823				145	0	0	112	28	20
SLC9B1	0	genome.wustl.edu	37	4	103870499	103870499	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	4	103870499	103870499	G	T	SNP	SLC9B1	ENST00000296422	human	ensembl	74_37	-1	known	missense	c.297	p.F99L	0.001	NULL	pfam_Cation/H_exchanger	-	no_errors	SLC9B1	HGNC	ENSG00000164037				83	0	0	102	11	9.73451
SLC9B1	0	genome.wustl.edu	37	4	103870505	103870505	+	Silent	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	4	103870505	103870505	C	T	SNP	SLC9B1	ENST00000296422	human	ensembl	74_37	-1	known	silent	c.291	p.G97	0.640	NULL	pfam_Cation/H_exchanger	-	no_errors	SLC9B1	HGNC	ENSG00000164037				86	0	0	102	6	5.55556
TBCK	0	genome.wustl.edu	37	4	107114826	107114826	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	4	107114826	107114826	G	A	SNP	TBCK	ENST00000273980	human	ensembl	74_37	-1	known	missense	c.1999	p.R667W	0.999	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom	pfam_Rab-GTPase-TBC_dom,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Rhodanese-like_dom,superfamily_Kinase-like_dom,superfamily_Rab-GTPase-TBC_dom,superfamily_Rhodanese-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Rab-GTPase-TBC_dom,smart_Rhodanese-like_dom,pfscan_Rab-GTPase-TBC_dom,pfscan_Prot_kinase_dom,pfscan_Rhodanese-like_dom	-	no_errors	TBCK	HGNC	ENSG00000145348				70	0	0	47	16	25.3968
LEF1	0	genome.wustl.edu	37	4	109086398	109086398	+	RNA	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	4	109086398	109086398	C	T	SNP	LEF1	ENST00000510135	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.003	-	-	-	no_errors	LEF1	HGNC	ENSG00000138795				41	0	0	35	9	20.4545
SEC24B	0	genome.wustl.edu	37	4	110416004	110416004	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	4	110416004	110416004	T	C	SNP	SEC24B	ENST00000265175	human	ensembl	74_37	+1	known	missense	c.1480	p.Y494H	1.000	NULL	pfam_Sec23/24_trunk_dom,pfam_Sec23/24_helical_dom,pfam_Sec23_24_beta_S,pfam_Znf_Sec23_Sec24,pfam_Gelsolin_dom,superfamily_Sec23/24_helical_dom,superfamily_Znf_Sec23_Sec24	-	no_errors	SEC24B	HGNC	ENSG00000138802				115	0	0	101	6	5.60748
EGF	0	genome.wustl.edu	37	4	110885671	110885671	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	4	110885671	110885671	A	T	SNP	EGF	ENST00000265171	human	ensembl	74_37	+1	known	missense	c.1553	p.D518V	1.000	pirsf_Pro-epidermal_GF,smart_LDLR_classB_rpt	pirsf_Pro-epidermal_GF,pfam_LDLR_classB_rpt,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,smart_LDLR_classB_rpt,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom,pfscan_LDLR_classB_rpt	-	no_errors	EGF	HGNC	ENSG00000138798				323	0	0	308	18	5.52147
USP53	0	genome.wustl.edu	37	4	120189470	120189470	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	4	120189470	120189470	G	C	SNP	USP53	ENST00000274030	human	ensembl	74_37	+1	known	missense	c.1183	p.G395R	1.000	NULL	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	-	no_errors	USP53	HGNC	ENSG00000145390				80	0	0	100	6	5.66038
PRDM5	0	genome.wustl.edu	37	4	121774675	121774675	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	4	121774675	121774675	T	G	SNP	PRDM5	ENST00000264808	human	ensembl	74_37	-1	known	missense	c.198	p.E66D	1.000	smart_SET_dom,pirsf_Znf_PRDM5,pfscan_SET_dom	pfam_Znf_C2H2,pfam_Znf_C2H2_jaz,smart_SET_dom,smart_Znf_C2H2-like,pirsf_Znf_PRDM5,pfscan_SET_dom,pfscan_Znf_C2H2	-	no_errors	PRDM5	HGNC	ENSG00000138738				441	1	0.226244	311	103	24.8792
IL21	0	genome.wustl.edu	37	4	123542048	123542048	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	4	123542048	123542048	C	T	SNP	IL21	ENST00000264497	human	ensembl	74_37	-1	known	missense	c.119	p.R40H	0.021	pfam_IL-15/IL-21_fam	pfam_IL-15/IL-21_fam	-	no_errors	IL21	HGNC	ENSG00000138684				114	1	0.869565	62	21	25.3012
CTBP1-AS2	0	genome.wustl.edu	37	4	1244750	1244750	+	RNA	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	4	1244750	1244750	G	A	SNP	CTBP1-AS2	ENST00000357591	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	CTBP1-AS2	HGNC	ENSG00000196810				59	0	0	46	16	25.8065
ANKRD50	0	genome.wustl.edu	37	4	125591259	125591259	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	4	125591259	125591259	A	T	SNP	ANKRD50	ENST00000504087	human	ensembl	74_37	-1	known	missense	c.3173	p.I1058N	1.000	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,superfamily_P-loop_NTPase,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	ANKRD50	HGNC	ENSG00000151458				118	0	0	70	41	36.9369
FAT4	0	genome.wustl.edu	37	4	126238232	126238232	+	Silent	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	4	126238232	126238232	G	A	SNP	FAT4	ENST00000394329	human	ensembl	74_37	+1	known	silent	c.666	p.V222	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,superfamily_Cadherin-like,superfamily_ConA-like_lec_gl_sf,smart_Cadherin,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT4	HGNC	ENSG00000196159				48	0	0	27	14	34.1463
MFSD8	0	genome.wustl.edu	37	4	128864930	128864930	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	4	128864930	128864930	C	T	SNP	MFSD8	ENST00000296468	human	ensembl	74_37	-1	known	missense	c.416	p.R139H	1.000	pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	MFSD8	HGNC	ENSG00000164073				96	0	0	70	20	22.2222
BOD1L1	0	genome.wustl.edu	37	4	13597501	13597501	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	4	13597501	13597501	C	T	SNP	BOD1L1	ENST00000040738	human	ensembl	74_37	-1	known	missense	c.8087	p.G2696E	0.000	NULL	NULL	-	no_errors	BOD1L1	HGNC	ENSG00000038219				291	0	0	265	50	15.873
BOD1L1	0	genome.wustl.edu	37	4	13603668	13603668	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	4	13603668	13603668	G	A	SNP	BOD1L1	ENST00000040738	human	ensembl	74_37	-1	known	missense	c.4856	p.A1619V	0.002	NULL	NULL	-	no_errors	BOD1L1	HGNC	ENSG00000038219				185	0	0	110	36	24.6575
ELF2	0	genome.wustl.edu	37	4	139980201	139980201	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	4	139980201	139980201	G	A	SNP	ELF2	ENST00000379550	human	ensembl	74_37	-1	known	missense	c.1718	p.A573V	0.928	NULL	pfam_TF_Elf_N,pfam_Ets_dom,smart_Ets_dom,pfscan_Ets_dom,prints_Ets_dom	-	no_errors	ELF2	HGNC	ENSG00000109381				257	0	0	187	82	30.4833
NR3C2	0	genome.wustl.edu	37	4	149075852	149075852	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	4	149075852	149075852	C	T	SNP	NR3C2	ENST00000355292	human	ensembl	74_37	-1	known	missense	c.2227	p.V743I	0.000	superfamily_Nucl_hormone_rcpt_ligand-bd	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Znf_hrmn_rcpt	-	no_errors	NR3C2	HGNC	ENSG00000151623				228	0	0	170	57	25.1101
LRBA	0	genome.wustl.edu	37	4	151765907	151765907	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	4	151765907	151765907	C	T	SNP	LRBA	ENST00000357115	human	ensembl	74_37	-1	known	missense	c.4364	p.C1455Y	1.000	NULL	pfam_BEACH_dom,pfam_DUF1088,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_ConA-like_lec_gl_sf,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom	-	no_errors	LRBA	HGNC	ENSG00000198589				83	0	0	58	21	26.5823
DCHS2	0	genome.wustl.edu	37	4	155157153	155157153	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	4	155157153	155157153	T	C	SNP	DCHS2	ENST00000357232	human	ensembl	74_37	-1	known	missense	c.7286	p.Q2429R	0.308	superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_HTH_CenpB_DNA-bd_dom,superfamily_Cadherin-like,superfamily_Homeodomain-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	DCHS2	HGNC	ENSG00000197410				116	0	0	117	32	21.4765
DCHS2	0	genome.wustl.edu	37	4	155254317	155254317	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	4	155254317	155254317	G	A	SNP	DCHS2	ENST00000357232	human	ensembl	74_37	-1	known	missense	c.1546	p.R516W	0.213	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_HTH_CenpB_DNA-bd_dom,superfamily_Cadherin-like,superfamily_Homeodomain-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	DCHS2	HGNC	ENSG00000197410				63	0	0	39	10	20.4082
GUCY1A3	0	genome.wustl.edu	37	4	156618181	156618181	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	4	156618181	156618181	C	A	SNP	GUCY1A3	ENST00000296518	human	ensembl	74_37	+1	known	missense	c.162	p.N54K	0.000	NULL	pfam_A/G_cyclase,pfam_Haem_no_assoc-bd,pfam_Heme_NO-bd,superfamily_A/G_cyclase,superfamily_NO_sig/Golgi_transp_ligand-bd,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	GUCY1A3	HGNC	ENSG00000164116				101	0	0	84	34	28.8136
TDO2	0	genome.wustl.edu	37	4	156832687	156832687	+	Silent	SNP	A	A	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	4	156832687	156832687	A	T	SNP	TDO2	ENST00000536354	human	ensembl	74_37	+1	known	silent	c.657	p.G219	1.000	pfam_Trp_2_3_dOase	pfam_Trp_2_3_dOase	-	no_errors	TDO2	HGNC	ENSG00000151790				72	0	0	65	6	8.4507
PDGFC	0	genome.wustl.edu	37	4	157684171	157684171	+	RNA	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	4	157684171	157684171	G	A	SNP	PDGFC	ENST00000504672	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.012	-	-	-	no_errors	PDGFC	HGNC	ENSG00000145431				43	0	0	26	8	23.5294
RAPGEF2	0	genome.wustl.edu	37	4	160260432	160260432	+	Silent	SNP	T	T	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	4	160260432	160260432	T	C	SNP	RAPGEF2	ENST00000264431	human	ensembl	74_37	+1	known	silent	c.1977	p.P659	0.051	pfam_Ras-assoc,superfamily_Ras_GEF_dom,smart_Ras-assoc,pfscan_Ras-assoc	pfam_RasGRF_CDC25,pfam_Ras-assoc,pfam_Ras-like_Gua-exchang_fac_N,pfam_PDZ,pfam_cNMP-bd_dom,superfamily_Ras_GEF_dom,superfamily_PDZ,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,smart_Ras-like_Gua-exchang_fac_N,smart_PDZ,smart_Ras-assoc,smart_RasGRF_CDC25,pfscan_cNMP-bd_dom,pfscan_PDZ,pfscan_Ras-assoc,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RAPGEF2	HGNC	ENSG00000109756				226	0	0	231	14	5.71429
IRF2	0	genome.wustl.edu	37	4	185340688	185340688	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	4	185340688	185340688	G	A	SNP	IRF2	ENST00000393593	human	ensembl	74_37	-1	known	missense	c.122	p.A41V	1.000	pfam_Interferon_reg_fact_DNA-bd_dom,smart_Interferon_reg_fact_DNA-bd_dom,pirsf_Interferon_reg_fac-1/2,prints_Interferon_reg_fact_DNA-bd_dom	pfam_Interferon_reg_fact_DNA-bd_dom,smart_Interferon_reg_fact_DNA-bd_dom,pirsf_Interferon_reg_fac-1/2,prints_Interferon_reg_fact_DNA-bd_dom	-	no_errors	IRF2	HGNC	ENSG00000168310				148	1	0.671141	126	36	22.2222
MLF1IP	0	genome.wustl.edu	37	4	185637662	185637662	+	Silent	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	4	185637662	185637662	C	T	SNP	MLF1IP	ENST00000281453	human	ensembl	74_37	-1	known	silent	c.507	p.A169	0.000	NULL	NULL	-	no_errors	MLF1IP	HGNC	ENSG00000151725				80	0	0	49	15	23.4375
SLC25A4	0	genome.wustl.edu	37	4	186068023	186068023	+	Silent	SNP	A	A	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	4	186068023	186068023	A	G	SNP	SLC25A4	ENST00000281456	human	ensembl	74_37	+1	known	silent	c.795	p.E265	1.000	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier,prints_Mit_carrier,prints_Aden_trnslctor,prints_Mit_uncoupling	-	no_errors	SLC25A4	HGNC	ENSG00000151729				64	0	0	38	15	28.3019
FAM149A	0	genome.wustl.edu	37	4	187084649	187084649	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	4	187084649	187084649	G	A	SNP	FAM149A	ENST00000356371	human	ensembl	74_37	+1	known	missense	c.1778	p.R593Q	0.006	NULL	pfam_DUF3719	-	no_errors	FAM149A	HGNC	ENSG00000109794				92	0	0	58	31	34.8315
TRIML2	0	genome.wustl.edu	37	4	189013068	189013068	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	4	189013068	189013068	G	T	SNP	TRIML2	ENST00000512729	human	ensembl	74_37	-1	known	missense	c.623	p.A208D	1.000	superfamily_ConA-like_lec_gl_sf,smart_PRY,pfscan_B30.2/SPRY,prints_Butyrophylin	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl_sf,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,prints_Butyrophylin	-	no_errors	TRIML2	HGNC	ENSG00000179046				101	1	0.980392	55	26	32.0988
WHSC1	0	genome.wustl.edu	37	4	1955098	1955098	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	4	1955098	1955098	C	T	SNP	WHSC1	ENST00000382891	human	ensembl	74_37	+1	known	missense	c.2185	p.R729C	1.000	smart_Znf_PHD,smart_Znf_RING,pfscan_Znf_RING	pfam_PWWP_dom,pfam_SET_dom,pfam_Znf_PHD-finger,pfam_HMG_box_dom,superfamily_Znf_FYVE_PHD,superfamily_HMG_box_dom,smart_PWWP_dom,smart_HMG_box_dom,smart_Znf_PHD,smart_Znf_RING,smart_AWS,smart_SET_dom,smart_Post-SET_dom,pfscan_AWS,pfscan_PWWP_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_RING,pfscan_HMG_box_dom	-	no_errors	WHSC1	HGNC	ENSG00000109685				247	0	0	192	90	31.9149
PACRGL	0	genome.wustl.edu	37	4	20709442	20709442	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	4	20709442	20709442	G	A	SNP	PACRGL	ENST00000471979	human	ensembl	74_37	+1	known	missense	c.224	p.R75Q	1.000	NULL	pfam_Parkin_co-regulated_protein,superfamily_ARM-type_fold	-	no_errors	PACRGL	HGNC	ENSG00000163138				64	0	0	56	12	17.6471
GPR125	0	genome.wustl.edu	37	4	22390136	22390136	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	4	22390136	22390136	A	C	SNP	GPR125	ENST00000334304	human	ensembl	74_37	-1	known	missense	c.3158	p.V1053G	0.816	NULL	pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_Leu-rich_rpt,pfam_Ig_I-set,pfam_GPCR_2_extracellular_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,pfscan_Ig-like_dom	-	no_errors	GPR125	HGNC	ENSG00000152990				99	0	0	65	28	30.1075
DHX15	0	genome.wustl.edu	37	4	24541776	24541776	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	4	24541776	24541776	A	G	SNP	DHX15	ENST00000336812	human	ensembl	74_37	-1	known	missense	c.1741	p.Y581H	1.000	pfam_Helicase-assoc_dom,superfamily_P-loop_NTPase,smart_Helicase-assoc_dom	pfam_DUF1605,pfam_Helicase-assoc_dom,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DHX15	HGNC	ENSG00000109606				109	0	0	114	8	6.55738
CCDC149	0	genome.wustl.edu	37	4	24854802	24854802	+	Splice_Site	SNP	C	C	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	4	24854802	24854802	C	A	SNP	CCDC149	ENST00000504487	human	ensembl	74_37	-1	known	splice_site	c.265-1	e4-1	1.000	-	-	-	no_errors	CCDC149	HGNC	ENSG00000181982				150	0	0	114	41	26.4516
HTT	0	genome.wustl.edu	37	4	3107097	3107097	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	4	3107097	3107097	G	A	SNP	HTT	ENST00000355072	human	ensembl	74_37	+1	known	missense	c.542	p.R181Q	1.000	superfamily_ARM-type_fold	pfam_Huntingtin_middle-repeat,pfam_HEAT,superfamily_ARM-type_fold,prints_Huntingtin	-	no_errors	HTT	HGNC	ENSG00000197386				87	0	0	57	34	37.3626
ARAP2	0	genome.wustl.edu	37	4	36134893	36134893	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	4	36134893	36134893	C	T	SNP	ARAP2	ENST00000303965	human	ensembl	74_37	-1	known	missense	c.3382	p.V1128I	1.000	superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	pfam_RhoGAP_dom,pfam_Pleckstrin_homology,pfam_ArfGAP,pfam_SAM_type1,pfam_SAM_2,pfam_Ras-assoc,superfamily_Rho_GTPase_activation_prot,superfamily_SAM/pointed,smart_SAM,smart_Pleckstrin_homology,smart_ArfGAP,smart_RhoGAP_dom,pfscan_Pleckstrin_homology,pfscan_Ras-assoc,pfscan_SAM,pfscan_ArfGAP,pfscan_RhoGAP_dom,prints_ArfGAP	-	no_errors	ARAP2	HGNC	ENSG00000047365				53	0	0	38	15	28.3019
DCAF4L1	0	genome.wustl.edu	37	4	41984913	41984913	+	Silent	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	4	41984913	41984913	C	T	SNP	DCAF4L1	ENST00000333141	human	ensembl	74_37	+1	known	silent	c.1104	p.F368	0.998	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DCAF4L1	HGNC	ENSG00000182308				87	0	0	56	29	34.1176
CORIN	0	genome.wustl.edu	37	4	47597894	47597894	+	Silent	SNP	A	A	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	4	47597894	47597894	A	G	SNP	CORIN	ENST00000273857	human	ensembl	74_37	-1	known	silent	c.2973	p.C991	0.997	pirsf_Peptidase_S1A_corin,pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1	pirsf_Peptidase_S1A_corin,pfam_Peptidase_S1,pfam_LDrepeatLR_classA_rpt,pfam_Frizzled_dom,superfamily_Trypsin-like_Pept_dom,superfamily_Frizzled_dom,superfamily_LDrepeatLR_classA_rpt,superfamily_Srcr_rcpt-rel,smart_Frizzled_dom,smart_LDrepeatLR_classA_rpt,smart_Srcr_rcpt-rel,smart_Peptidase_S1,prints_LDrepeatLR_classA_rpt,prints_Peptidase_S1A,pfscan_Frizzled_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_Peptidase_S1	-	no_errors	CORIN	HGNC	ENSG00000145244				79	0	0	41	18	30.5085
FRYL	0	genome.wustl.edu	37	4	48625144	48625144	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	4	48625144	48625144	T	C	SNP	FRYL	ENST00000358350	human	ensembl	74_37	-1	known	missense	c.173	p.Q58R	1.000	NULL	superfamily_ARM-type_fold	-	no_errors	FRYL	HGNC	ENSG00000075539				18	0	0	25	4	13.7931
PDGFRA	0	genome.wustl.edu	37	4	55129887	55129887	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	4	55129887	55129887	G	A	SNP	PDGFRA	ENST00000257290	human	ensembl	74_37	+1	known	missense	c.421	p.E141K	0.845	pirsf_Tyr_kinase_CSF1/PDGF_rcpt,smart_Ig_sub	pirsf_Tyr_kinase_CSF1/PDGF_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Ig_I-set,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	PDGFRA	HGNC	ENSG00000134853				165	0	0	118	55	31.7919
PDGFRA	0	genome.wustl.edu	37	4	55139866	55139866	+	Silent	SNP	T	T	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	4	55139866	55139866	T	C	SNP	PDGFRA	ENST00000257290	human	ensembl	74_37	+1	known	silent	c.1527	p.A509	0.273	pirsf_Tyr_kinase_CSF1/PDGF_rcpt	pirsf_Tyr_kinase_CSF1/PDGF_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Ig_I-set,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	PDGFRA	HGNC	ENSG00000134853				83	0	0	70	17	19.5402
EVC	0	genome.wustl.edu	37	4	5754554	5754554	+	RNA	SNP	T	T	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	4	5754554	5754554	T	G	SNP	EVC	ENST00000514919	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	EVC	HGNC	ENSG00000072840				119	0	0	86	23	21.1009
EVC	0	genome.wustl.edu	37	4	5754612	5754612	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	4	5754612	5754612	A	G	SNP	EVC	ENST00000264956	human	ensembl	74_37	+1	known	missense	c.1148	p.E383G	0.262	NULL	NULL	-	no_errors	EVC	HGNC	ENSG00000072840				91	0	0	90	29	24.3697
CRMP1	0	genome.wustl.edu	37	4	5837754	5837754	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	4	5837754	5837754	T	G	SNP	CRMP1	ENST00000324989	human	ensembl	74_37	-1	known	missense	c.1511	p.K504T	1.000	pfam_Amidohydro_1,superfamily_Metal-dep_hydrolase_composite,tigrfam_Hydantoinase/dihydroPyrase	pfam_Amidohydro_1,superfamily_Metal-dep_hydrolase_composite,tigrfam_Hydantoinase/dihydroPyrase	-	no_errors	CRMP1	HGNC	ENSG00000072832				180	0	0	133	41	23.5632
CRMP1	0	genome.wustl.edu	37	4	5838618	5838618	+	Silent	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	4	5838618	5838618	G	A	SNP	CRMP1	ENST00000324989	human	ensembl	74_37	-1	known	silent	c.1326	p.V442	1.000	pfam_Amidohydro_1,superfamily_Metal-dep_hydrolase_composite,tigrfam_Hydantoinase/dihydroPyrase	pfam_Amidohydro_1,superfamily_Metal-dep_hydrolase_composite,tigrfam_Hydantoinase/dihydroPyrase	-	no_errors	CRMP1	HGNC	ENSG00000072832				93	0	0	63	16	20.2532
PSAPL1	0	genome.wustl.edu	37	4	7435678	7435678	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	4	7435678	7435678	G	T	SNP	PSAPL1	ENST00000319098	human	ensembl	74_37	-1	known	missense	c.929	p.S310Y	0.009	pirsf_Saposin_chordata,pfam_SapB_1,superfamily_Saposin-like,smart_SaposinB,prints_Saposin,pfscan_SaposinB	pirsf_Saposin_chordata,pfam_SapA,pfam_SapB_1,pfam_SapB_2,superfamily_Saposin-like,smart_SapA,smart_SaposinB,prints_Saposin,pfscan_SapA,pfscan_SaposinB	-	no_errors	PSAPL1	HGNC	ENSG00000178597				86	0	0	64	23	26.4368
BTC	0	genome.wustl.edu	37	4	75681147	75681147	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	4	75681147	75681147	C	A	SNP	BTC	ENST00000395743	human	ensembl	74_37	-1	known	missense	c.203	p.R68M	0.333	pfscan_EG-like_dom	pfscan_EG-like_dom	-	no_errors	BTC	HGNC	ENSG00000174808				268	0	0	218	71	24.5675
SORCS2	0	genome.wustl.edu	37	4	7715973	7715973	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	4	7715973	7715973	C	T	SNP	SORCS2	ENST00000507866	human	ensembl	74_37	+1	known	missense	c.1996	p.R666C	0.942	smart_VPS10	pfam_PKD_dom,superfamily_PKD_dom,smart_VPS10,smart_PKD/Chitinase_dom,pfscan_PKD_dom	-	no_errors	SORCS2	HGNC	ENSG00000184985				28	0	0	14	5	26.3158
NAA11	0	genome.wustl.edu	37	4	80246728	80246728	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	4	80246728	80246728	A	T	SNP	NAA11	ENST00000286794	human	ensembl	74_37	-1	known	missense	c.304	p.F102I	1.000	pfam_GNAT_dom,pfam_FR47,superfamily_Acyl_CoA_acyltransferase,pfscan_GNAT_dom	pfam_GNAT_dom,pfam_FR47,superfamily_Acyl_CoA_acyltransferase,pfscan_GNAT_dom	-	no_errors	NAA11	HGNC	ENSG00000156269				90	0	0	77	5	6.09756
GAK	0	genome.wustl.edu	37	4	858975	858975	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	4	858975	858975	A	G	SNP	GAK	ENST00000314167	human	ensembl	74_37	-1	known	missense	c.3101	p.L1034P	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Tensin_phosphatase_C2-dom,pfam_DnaJ_domain,superfamily_Kinase-like_dom,superfamily_DnaJ_domain,superfamily_C2_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_DnaJ_domain,pfscan_Prot_kinase_dom,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom,pfscan_DnaJ_domain	-	no_errors	GAK	HGNC	ENSG00000178950				48	0	0	35	4	10.2564
GAK	0	genome.wustl.edu	37	4	876506	876506	+	Silent	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	4	876506	876506	G	A	SNP	GAK	ENST00000314167	human	ensembl	74_37	-1	known	silent	c.1506	p.N502	0.999	pfscan_Phosphatase_tensin-typ	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Tensin_phosphatase_C2-dom,pfam_DnaJ_domain,superfamily_Kinase-like_dom,superfamily_DnaJ_domain,superfamily_C2_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_DnaJ_domain,pfscan_Prot_kinase_dom,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom,pfscan_DnaJ_domain	-	no_errors	GAK	HGNC	ENSG00000178950				93	0	0	70	25	26.3158
PTPN13	0	genome.wustl.edu	37	4	87685814	87685814	+	Silent	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	4	87685814	87685814	G	A	SNP	PTPN13	ENST00000436978	human	ensembl	74_37	+1	known	silent	c.4086	p.K1362	0.998	pirsf_Tyr_Pase_non-rcpt_typ-13,superfamily_PDZ	pirsf_Tyr_Pase_non-rcpt_typ-13,pfam_Tyr_Pase_rcpt/non-rcpt,pfam_PDZ,pfam_FERM_central,pfam_FERM_PH-like_C,pfam_FERM_N,superfamily_FERM_central,superfamily_PDZ,superfamily_PAZ_dom,smart_KIND,smart_Band_41_domain,smart_PDZ,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_rcpt/non-rcpt,prints_Band_41_fam,pfscan_FERM_domain,pfscan_PDZ,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPN13	HGNC	ENSG00000163629				33	0	0	13	5	27.7778
KLHL8	0	genome.wustl.edu	37	4	88116486	88116486	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	4	88116486	88116486	A	G	SNP	KLHL8	ENST00000273963	human	ensembl	74_37	-1	known	missense	c.206	p.V69A	1.000	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	pfam_Kelch_1,pfam_BACK,pfam_Kelch_2,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL8	HGNC	ENSG00000145332				60	0	0	49	5	9.25926
TMEM175	0	genome.wustl.edu	37	4	951841	951841	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	4	951841	951841	G	T	SNP	TMEM175	ENST00000264771	human	ensembl	74_37	+1	known	missense	c.1072	p.A358S	1.000	NULL	pfam_DUF1211_TMEM175	-	no_errors	TMEM175	HGNC	ENSG00000127419				73	0	0	44	19	30.1587
UNC5C	0	genome.wustl.edu	37	4	96166150	96166150	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	4	96166150	96166150	T	C	SNP	UNC5C	ENST00000453304	human	ensembl	74_37	-1	known	missense	c.921	p.I307M	1.000	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_ZU5,pfam_Death_domain,pfam_Ig_I-set,pfam_Thrombospondin_1_rpt,superfamily_DEATH-like_dom,superfamily_Thrombospondin_1_rpt,smart_Ig_sub,smart_Ig_sub2,smart_Thrombospondin_1_rpt,smart_ZU5,smart_Death_domain,pfscan_Thrombospondin_1_rpt,pfscan_ZU5,pfscan_Ig-like_dom	-	no_errors	UNC5C	HGNC	ENSG00000182168				170	0	0	118	41	25.7862
NKD2	0	genome.wustl.edu	37	5	1038076	1038076	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	5	1038076	1038076	G	A	SNP	NKD2	ENST00000296849	human	ensembl	74_37	+1	known	missense	c.944	p.R315Q	0.239	NULL	pfscan_EF_hand_dom	-	no_errors	NKD2	HGNC	ENSG00000145506				18	0	0	17	6	26.087
FBXL17	0	genome.wustl.edu	37	5	107700605	107700605	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	5	107700605	107700605	C	T	SNP	FBXL17	ENST00000542267	human	ensembl	74_37	-1	known	missense	c.1208	p.G403D	1.000	smart_Leu-rich_rpt_Cys-con_subtyp	pfam_F-box_dom,superfamily_F-box_dom,smart_F-box_dom,smart_Leu-rich_rpt_Cys-con_subtyp,pfscan_F-box_dom	-	no_errors	FBXL17	HGNC	ENSG00000145743				106	0	0	82	18	18
WDR36	0	genome.wustl.edu	37	5	110439999	110439999	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	5	110439999	110439999	T	G	SNP	WDR36	ENST00000506538	human	ensembl	74_37	+1	known	missense	c.1022	p.F341C	1.000	pfam_WD40_repeat,superfamily_Quinonprotein_ADH-like_supfam,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_SSU_processome_Utp21,pfam_WD40_repeat,superfamily_Quinonprotein_ADH-like_supfam,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR36	HGNC	ENSG00000134987				208	0	0	213	20	8.58369
APC	0	genome.wustl.edu	37	5	112164562	112164562	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	5	112164562	112164562	A	G	SNP	APC	ENST00000257430	human	ensembl	74_37	+1	known	missense	c.1636	p.S546G	1.000	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo	pfam_APC_basic_dom,pfam_EB1-bd,pfam_APC_Cys-rich_rpt,pfam_Armadillo,pfam_APC_dom,pfam_SAMP,pfam_APC_15aa_rpt,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	APC	HGNC	ENSG00000134982				76	0	0	69	6	8
MCC	0	genome.wustl.edu	37	5	112379243	112379243	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	5	112379243	112379243	T	C	SNP	MCC	ENST00000302475	human	ensembl	74_37	-1	known	missense	c.2170	p.T724A	0.037	NULL	pfam_USH1C-bd_PDZ_domain,superfamily_tRNA-bd_arm	-	no_errors	MCC	HGNC	ENSG00000171444				37	0	0	25	16	39.0244
TSSK1B	0	genome.wustl.edu	37	5	112769928	112769928	+	Silent	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	5	112769928	112769928	G	A	SNP	TSSK1B	ENST00000390666	human	ensembl	74_37	-1	known	silent	c.609	p.G203	0.995	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	TSSK1B	HGNC	ENSG00000212122				62	0	0	51	15	22.7273
DMXL1	0	genome.wustl.edu	37	5	118433795	118433795	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	5	118433795	118433795	G	A	SNP	DMXL1	ENST00000539542	human	ensembl	74_37	+1	known	missense	c.209	p.G70D	1.000	superfamily_WD40_repeat_dom	pfam_Rav1p_C,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DMXL1	HGNC	ENSG00000172869				186	0	0	105	39	27.0833
ADAMTS19	0	genome.wustl.edu	37	5	129072766	129072766	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	5	129072766	129072766	T	G	SNP	ADAMTS19	ENST00000274487	human	ensembl	74_37	+1	known	missense	c.3479	p.L1160R	1.000	pfscan_PLAC	pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_PLAC,pfam_Pept_M10_metallopeptidase,superfamily_Thrombospondin_1_rpt,smart_ADAM_Cys-rich,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS19	HGNC	ENSG00000145808				103	0	0	99	9	8.33333
FNIP1	0	genome.wustl.edu	37	5	131008484	131008484	+	Silent	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	5	131008484	131008484	C	T	SNP	FNIP1	ENST00000510461	human	ensembl	74_37	-1	known	silent	c.1653	p.T551	0.056	NULL	NULL	-	no_errors	FNIP1	HGNC	ENSG00000217128				155	0	0	102	45	30.6122
TCF7	0	genome.wustl.edu	37	5	133478495	133478495	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	5	133478495	133478495	T	C	SNP	TCF7	ENST00000321584	human	ensembl	74_37	+1	known	missense	c.839	p.M280T	1.000	pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	pfam_CTNNB1-bd_N,pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	-	no_errors	TCF7	HGNC	ENSG00000081059				126	0	0	100	53	34.6405
CATSPER3	0	genome.wustl.edu	37	5	134305635	134305635	+	Silent	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	5	134305635	134305635	C	T	SNP	CATSPER3	ENST00000282611	human	ensembl	74_37	+1	known	silent	c.105	p.N35	0.891	NULL	pfam_Ion_trans_dom,pfam_PKD1_2_channel	-	no_errors	CATSPER3	HGNC	ENSG00000152705				239	0	0	177	70	28.3401
CDC23	0	genome.wustl.edu	37	5	137525405	137525405	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	5	137525405	137525405	G	A	SNP	CDC23	ENST00000394886	human	ensembl	74_37	-1	known	missense	c.1540	p.R514C	1.000	pfam_Transposase_InsH_N,smart_TPR_repeat	pfam_APC8,pfam_TPR_1,pfam_Transposase_InsH_N,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	CDC23	HGNC	ENSG00000094880				80	0	0	46	18	28.125
CTNNA1	0	genome.wustl.edu	37	5	138268334	138268334	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	5	138268334	138268334	A	G	SNP	CTNNA1	ENST00000302763	human	ensembl	74_37	+1	known	missense	c.2366	p.Q789R	1.000	pfam_Vinculin/catenin,superfamily_Vinculin/catenin,prints_Alpha_catenin,prints_Vinculin	pfam_Vinculin/catenin,superfamily_Vinculin/catenin,prints_Alpha_catenin,prints_Vinculin	-	no_errors	CTNNA1	HGNC	ENSG00000044115				78	0	0	37	13	26
APBB3	0	genome.wustl.edu	37	5	139941778	139941778	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	5	139941778	139941778	G	A	SNP	APBB3	ENST00000356738	human	ensembl	74_37	-1	known	missense	c.533	p.A178V	1.000	pfam_PTB/PI_dom,smart_PTB/PI_dom,pfscan_PTB/PI_dom	pfam_PTB/PI_dom,pfam_WW_dom,superfamily_WW_dom,smart_WW_dom,smart_PTB/PI_dom,pfscan_PTB/PI_dom,pfscan_WW_dom	-	no_errors	APBB3	HGNC	ENSG00000113108				76	0	0	53	30	36.1446
TMCO6	0	genome.wustl.edu	37	5	140023147	140023147	+	Splice_Site	SNP	A	A	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	5	140023147	140023147	A	G	SNP	TMCO6	ENST00000252100	human	ensembl	74_37	+1	known	splice_site	c.825-2	e8-2	0.998	-	-	-	no_errors	TMCO6	HGNC	ENSG00000113119				375	0	0	299	101	25.25
ZMAT2	0	genome.wustl.edu	37	5	140085281	140085281	+	Silent	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	5	140085281	140085281	C	T	SNP	ZMAT2	ENST00000274712	human	ensembl	74_37	+1	known	silent	c.540	p.D180	0.999	NULL	pfam_Znf_C2H2_jaz,pfam_Znf_U1-C,smart_Znf_U1	-	no_errors	ZMAT2	HGNC	ENSG00000146007				106	0	0	77	30	28.0374
PCDHA4	0	genome.wustl.edu	37	5	140188686	140188686	+	Silent	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	5	140188686	140188686	C	T	SNP	PCDHA4	ENST00000530339	human	ensembl	74_37	+1	known	silent	c.1914	p.D638	0.098	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA4	HGNC	ENSG00000204967				146	0	0	96	29	23.2
PCDHA5	0	genome.wustl.edu	37	5	140202575	140202575	+	Silent	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	5	140202575	140202575	G	A	SNP	PCDHA5	ENST00000529859	human	ensembl	74_37	+1	known	silent	c.1215	p.S405	0.005	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA5	HGNC	ENSG00000204965				307	0	0	198	66	25
PCDHA8	0	genome.wustl.edu	37	5	140221176	140221176	+	Silent	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	5	140221176	140221176	C	T	SNP	PCDHA8	ENST00000531613	human	ensembl	74_37	+1	known	silent	c.270	p.I90	0.921	pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA8	HGNC	ENSG00000204962				273	0	0	238	49	17.0732
PCDHA12	0	genome.wustl.edu	37	5	140257241	140257241	+	Silent	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	5	140257241	140257241	C	T	SNP	PCDHA12	ENST00000398631	human	ensembl	74_37	+1	known	silent	c.2184	p.T728	0.000	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA12	HGNC	ENSG00000251664				49	0	0	28	15	34.8837
PCDHB4	0	genome.wustl.edu	37	5	140503797	140503797	+	Silent	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	5	140503797	140503797	C	T	SNP	PCDHB4	ENST00000194152	human	ensembl	74_37	+1	known	silent	c.2217	p.S739	0.010	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB4	HGNC	ENSG00000081818				207	0	0	158	61	27.8539
PCDHB8	0	genome.wustl.edu	37	5	140559636	140559636	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	5	140559636	140559636	T	C	SNP	PCDHB8	ENST00000239444	human	ensembl	74_37	+1	known	missense	c.2021	p.L674P	0.004	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB8	HGNC	ENSG00000120322				152	0	0	85	36	29.7521
PCDHB16	0	genome.wustl.edu	37	5	140562237	140562237	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	5	140562237	140562237	G	A	SNP	PCDHB16	ENST00000361016	human	ensembl	74_37	+1	known	missense	c.103	p.V35I	0.001	pfam_Cadherin_N,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB16	HGNC	ENSG00000196963				211	0	0	140	54	27.8351
PCDHB11	0	genome.wustl.edu	37	5	140580848	140580848	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	5	140580848	140580848	G	A	SNP	PCDHB11	ENST00000354757	human	ensembl	74_37	+1	known	missense	c.1501	p.A501T	0.782	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHB11	HGNC	ENSG00000197479				236	0	0	163	50	23.4742
PCDHB18	0	genome.wustl.edu	37	5	140616130	140616130	+	RNA	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	5	140616130	140616130	G	A	SNP	PCDHB18	ENST00000526308	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	PCDHB18	HGNC	ENSG00000146001				109	0	0	65	29	30.8511
PCDHB15	0	genome.wustl.edu	37	5	140626735	140626735	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	5	140626735	140626735	G	A	SNP	PCDHB15	ENST00000231173	human	ensembl	74_37	+1	known	missense	c.1589	p.R530H	0.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB15	HGNC	ENSG00000113248				104	0	0	100	29	22.4806
SLC25A2	0	genome.wustl.edu	37	5	140683099	140683099	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	5	140683099	140683099	C	T	SNP	SLC25A2	ENST00000239451	human	ensembl	74_37	-1	known	missense	c.334	p.A112T	0.869	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	-	no_errors	SLC25A2	HGNC	ENSG00000120329				169	0	0	120	46	27.7108
PCDHGA6	0	genome.wustl.edu	37	5	140756049	140756049	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	5	140756049	140756049	C	T	SNP	PCDHGA6	ENST00000517434	human	ensembl	74_37	+1	known	missense	c.2399	p.T800M	0.000	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA6	HGNC	ENSG00000253731				66	0	0	50	20	28.5714
PCDHGA12	0	genome.wustl.edu	37	5	140811041	140811041	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	5	140811041	140811041	G	A	SNP	PCDHGA12	ENST00000252085	human	ensembl	74_37	+1	known	missense	c.715	p.A239T	0.978	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA12	HGNC	ENSG00000253159				114	0	0	75	27	26.4706
PCDH1	0	genome.wustl.edu	37	5	141243692	141243692	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	5	141243692	141243692	G	A	SNP	PCDH1	ENST00000287008	human	ensembl	74_37	-1	known	missense	c.2204	p.T735M	0.943	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Protocadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH1	HGNC	ENSG00000156453				52	0	0	36	6	14.2857
TRIO	0	genome.wustl.edu	37	5	14498254	14498254	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	5	14498254	14498254	G	A	SNP	TRIO	ENST00000344204	human	ensembl	74_37	+1	known	missense	c.8104	p.V2702I	1.000	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_DH-domain,pfam_Prot_kinase_dom,pfam_Spectrin_repeat,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ig_I-set,pfam_SH3_domain,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_SH3_domain,superfamily_CRAL-TRIO_dom,superfamily_Capsid/spike_ssDNA_virus,smart_CRAL-TRIO_dom,smart_Spectrin/alpha-actinin,smart_DH-domain,smart_Pleckstrin_homology,smart_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_CRAL-TRIO_dom,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,pfscan_DH-domain	-	no_errors	TRIO	HGNC	ENSG00000038382				130	0	0	93	66	41.5094
RBM27	0	genome.wustl.edu	37	5	145650551	145650551	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	5	145650551	145650551	T	G	SNP	RBM27	ENST00000265271	human	ensembl	74_37	+1	known	missense	c.2726	p.L909R	1.000	NULL	pfam_PWI_dom,pfam_Znf_CCCH,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBM27	HGNC	ENSG00000091009				49	0	0	37	16	30.1887
SH3TC2	0	genome.wustl.edu	37	5	148386495	148386495	+	Nonsense_Mutation	SNP	G	G	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	5	148386495	148386495	G	C	SNP	SH3TC2	ENST00000515425	human	ensembl	74_37	-1	known	nonsense	c.3624	p.Y1208*	1.000	NULL	pfam_SH3_domain,pfam_TPR_1,superfamily_SH3_domain,smart_SH3_domain,smart_TPR_repeat,pfscan_SH3_domain	-	no_errors	SH3TC2	HGNC	ENSG00000169247				137	0	0	149	8	5.09554
ARSI	0	genome.wustl.edu	37	5	149677000	149677000	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	5	149677000	149677000	T	C	SNP	ARSI	ENST00000328668	human	ensembl	74_37	-1	known	missense	c.1487	p.N496S	1.000	superfamily_Alkaline_phosphatase_core	pfam_Sulfatase,superfamily_Alkaline_phosphatase_core	-	no_errors	ARSI	HGNC	ENSG00000183876				139	0	0	141	11	7.23684
TCOF1	0	genome.wustl.edu	37	5	149776323	149776323	+	Silent	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	5	149776323	149776323	G	A	SNP	TCOF1	ENST00000451292	human	ensembl	74_37	+1	known	silent	c.4371	p.E1457	0.006	NULL	pfam_TCS_treacle,smart_LisH_dimerisation,pfscan_LisH_dimerisation,prints_Treacle-like_TCS	-	no_errors	TCOF1	HGNC	ENSG00000070814				24	0	0	21	8	27.5862
NDST1	0	genome.wustl.edu	37	5	149901204	149901204	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	5	149901204	149901204	C	T	SNP	NDST1	ENST00000261797	human	ensembl	74_37	+1	known	missense	c.388	p.R130C	1.000	pfam_Heparan_SO4_deacetylase	pfam_Heparan_SO4_deacetylase,pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase	-	no_errors	NDST1	HGNC	ENSG00000070614				207	0	0	152	45	22.8426
NDST1	0	genome.wustl.edu	37	5	149921174	149921174	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	5	149921174	149921174	G	A	SNP	NDST1	ENST00000261797	human	ensembl	74_37	+1	known	missense	c.1792	p.E598K	1.000	superfamily_P-loop_NTPase	pfam_Heparan_SO4_deacetylase,pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase	-	no_errors	NDST1	HGNC	ENSG00000070614				62	0	0	52	12	18.75
FAT2	0	genome.wustl.edu	37	5	150946762	150946762	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	5	150946762	150946762	C	T	SNP	FAT2	ENST00000261800	human	ensembl	74_37	-1	known	nonsense	c.1731	p.W577*	0.024	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,superfamily_Cadherin-like,superfamily_ConA-like_lec_gl_sf,smart_Cadherin,smart_Laminin_G,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT2	HGNC	ENSG00000086570				131	1	0.757576	101	42	29.3706
FAT2	0	genome.wustl.edu	37	5	150948282	150948282	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	5	150948282	150948282	A	G	SNP	FAT2	ENST00000261800	human	ensembl	74_37	-1	known	missense	c.211	p.Y71H	1.000	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,superfamily_Cadherin-like,superfamily_ConA-like_lec_gl_sf,smart_Cadherin,smart_Laminin_G,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT2	HGNC	ENSG00000086570				335	0	0	279	29	9.41558
G3BP1	0	genome.wustl.edu	37	5	151179453	151179453	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	5	151179453	151179453	C	T	SNP	G3BP1	ENST00000356245	human	ensembl	74_37	+1	known	missense	c.847	p.R283C	1.000	NULL	pfam_NTF2,pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,pfscan_Nuclear_transport_factor_2_euk	-	no_errors	G3BP1	HGNC	ENSG00000145907				35	0	0	36	5	12.1951
GRIA1	0	genome.wustl.edu	37	5	153029894	153029894	+	Silent	SNP	A	A	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	5	153029894	153029894	A	G	SNP	GRIA1	ENST00000448073	human	ensembl	74_37	+1	known	silent	c.495	p.L165	0.998	pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I	pfam_ANF_lig-bd_rcpt,pfam_Iontro_glu_rcpt,pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,superfamily_Peripla_BP_I,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIA1	HGNC	ENSG00000155511				72	0	0	55	4	6.77966
GEMIN5	0	genome.wustl.edu	37	5	154284999	154284999	+	Silent	SNP	T	T	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	5	154284999	154284999	T	C	SNP	GEMIN5	ENST00000285873	human	ensembl	74_37	-1	known	silent	c.2433	p.S811	0.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	GEMIN5	HGNC	ENSG00000082516				165	0	0	111	43	27.9221
KIF4B	0	genome.wustl.edu	37	5	154395130	154395130	+	Silent	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	5	154395130	154395130	C	T	SNP	KIF4B	ENST00000435029	human	ensembl	74_37	+1	known	silent	c.1711	p.L571	1.000	NULL	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF4B	HGNC	ENSG00000226650				73	0	0	45	17	27.4194
FAM71B	0	genome.wustl.edu	37	5	156592737	156592737	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	5	156592737	156592737	C	T	SNP	FAM71B	ENST00000302938	human	ensembl	74_37	-1	known	missense	c.443	p.R148H	0.897	pfam_DUF3699	pfam_DUF3699	-	no_errors	FAM71B	HGNC	ENSG00000170613				145	0	0	85	29	25.4386
ADAM19	0	genome.wustl.edu	37	5	156964960	156964960	+	Silent	SNP	A	A	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	5	156964960	156964960	A	C	SNP	ADAM19	ENST00000394020	human	ensembl	74_37	-1	known	silent	c.297	p.T99	0.085	pfam_Peptidase_M12B_N	pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_ADAM_Cys-rich,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_EG-like_dom,pfscan_Peptidase_M12B,prints_Blood-coag_inhib_Disintegrin	-	no_errors	ADAM19	HGNC	ENSG00000135074				127	0	0	77	31	28.7037
SDHAP3	0	genome.wustl.edu	37	5	1593303	1593303	+	RNA	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	5	1593303	1593303	C	T	SNP	SDHAP3	ENST00000436493	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	SDHAP3	HGNC	ENSG00000185986				75	0	0	58	14	19.4444
FBXL7	0	genome.wustl.edu	37	5	15936943	15936943	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	5	15936943	15936943	G	A	SNP	FBXL7	ENST00000504595	human	ensembl	74_37	+1	known	missense	c.1124	p.C375Y	1.000	smart_Leu-rich_rpt_Cys-con_subtyp	pfam_Leu-rich_rpt,pfam_F-box_dom,superfamily_F-box_dom,smart_F-box_dom,smart_Leu-rich_rpt_Cys-con_subtyp,pfscan_F-box_dom	-	no_errors	FBXL7	HGNC	ENSG00000183580				19	0	0	12	8	40
C1QTNF2	0	genome.wustl.edu	37	5	159781796	159781796	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	5	159781796	159781796	G	A	SNP	C1QTNF2	ENST00000393975	human	ensembl	74_37	-1	known	missense	c.358	p.R120W	0.632	pfam_Collagen	pfam_C1q,pfam_Collagen,superfamily_Tumour_necrosis_fac-like_dom,smart_C1q,pfscan_C1q,prints_C1q	-	no_errors	C1QTNF2	HGNC	ENSG00000145861				48	0	0	32	4	11.1111
C1QTNF2	0	genome.wustl.edu	37	5	159781937	159781937	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	5	159781937	159781937	G	A	SNP	C1QTNF2	ENST00000393975	human	ensembl	74_37	-1	known	missense	c.217	p.R73W	1.000	NULL	pfam_C1q,pfam_Collagen,superfamily_Tumour_necrosis_fac-like_dom,smart_C1q,pfscan_C1q,prints_C1q	-	no_errors	C1QTNF2	HGNC	ENSG00000145861				20	0	0	2	5	71.4286
ATP10B	0	genome.wustl.edu	37	5	160076199	160076199	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	5	160076199	160076199	A	T	SNP	ATP10B	ENST00000327245	human	ensembl	74_37	-1	known	missense	c.740	p.L247H	1.000	pfam_ATPase_P-typ_transduc_dom_A,tigrfam_ATPase_P-typ_Plipid-transp	pfam_ATPase_P-typ_transduc_dom_A,pfam_HAD-like_dom,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Plipid-transp,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP10B	HGNC	ENSG00000118322				120	0	0	66	20	23.2558
GABRA1	0	genome.wustl.edu	37	5	161292772	161292772	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	5	161292772	161292772	G	T	SNP	GABRA1	ENST00000023897	human	ensembl	74_37	+1	known	missense	c.233	p.G78V	1.000	pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABAAa_rcpt,prints_GABAA_rcpt,prints_GABBAa1_rcpt,prints_Neur_channel,prints_GABBAg_rcpt,tigrfam_Neur_channel	-	no_errors	GABRA1	HGNC	ENSG00000022355				241	0	0	162	41	20.197
GABRG2	0	genome.wustl.edu	37	5	161530980	161530980	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	5	161530980	161530980	A	T	SNP	GABRG2	ENST00000356592	human	ensembl	74_37	+1	known	missense	c.717	p.Q239H	0.993	pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,prints_GABAAa_rcpt,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABBAg_rcpt,prints_GABAA_rcpt,prints_GABBAg2_rcpt,prints_GABAAa_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	GABRG2	HGNC	ENSG00000113327				81	0	0	77	5	6.09756
NUDCD2	0	genome.wustl.edu	37	5	162887021	162887021	+	Silent	SNP	T	T	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	5	162887021	162887021	T	C	SNP	NUDCD2	ENST00000302764	human	ensembl	74_37	-1	known	silent	c.36	p.V12	1.000	superfamily_HSP20-like_chaperone	pfam_CS_dom,superfamily_HSP20-like_chaperone,pfscan_CS_dom	-	no_errors	NUDCD2	HGNC	ENSG00000170584				236	0	0	233	13	5.28455
ZNF622	0	genome.wustl.edu	37	5	16465449	16465449	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	5	16465449	16465449	A	G	SNP	ZNF622	ENST00000308683	human	ensembl	74_37	-1	known	missense	c.326	p.M109T	0.985	NULL	pfam_Znf_C2H2_jaz,smart_Znf_U1,smart_Znf_C2H2-like	-	no_errors	ZNF622	HGNC	ENSG00000173545				178	0	0	226	16	6.61157
FBLL1	0	genome.wustl.edu	37	5	167957204	167957204	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	5	167957204	167957204	C	T	SNP	FBLL1	ENST00000338333	human	ensembl	74_37	+1	putative	missense	c.695	p.P232L	1.000	pfam_Fibrillarin,pirsf_Fibrillarin,prints_Fibrillarin	pfam_Fibrillarin,pirsf_Fibrillarin,prints_Fibrillarin	-	no_errors	FBLL1	HGNC	ENSG00000188573				42	0	0	37	8	17.7778
CPEB4	0	genome.wustl.edu	37	5	173383109	173383109	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	5	173383109	173383109	G	A	SNP	CPEB4	ENST00000265085	human	ensembl	74_37	+1	known	missense	c.2159	p.R720H	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	CPEB4	HGNC	ENSG00000113742				132	0	0	59	30	33.7079
SFXN1	0	genome.wustl.edu	37	5	174937167	174937167	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	5	174937167	174937167	G	A	SNP	SFXN1	ENST00000321442	human	ensembl	74_37	+1	known	missense	c.391	p.V131I	1.000	pfam_Mtc,tigrfam_Mtc	pfam_Mtc,tigrfam_Mtc	-	no_errors	SFXN1	HGNC	ENSG00000164466				16	0	0	18	6	25
SNCB	0	genome.wustl.edu	37	5	176048239	176048239	+	Silent	SNP	C	C	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	5	176048239	176048239	C	A	SNP	SNCB	ENST00000310112	human	ensembl	74_37	-1	known	silent	c.348	p.G116	0.992	pfam_Synuclein,prints_Synuclein_beta	pfam_Synuclein,prints_Synuclein,prints_Synuclein_beta	-	no_errors	SNCB	HGNC	ENSG00000074317				27	0	0	23	2	8
DDX41	0	genome.wustl.edu	37	5	176939374	176939374	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	5	176939374	176939374	C	T	SNP	DDX41	ENST00000507955	human	ensembl	74_37	-1	known	missense	c.1570	p.G524R	1.000	pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_C,pfscan_Helicase_C	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,superfamily_Znf_CCHC,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX41	HGNC	ENSG00000183258				94	0	0	92	5	5.15464
COL23A1	0	genome.wustl.edu	37	5	177682023	177682023	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	5	177682023	177682023	G	A	SNP	COL23A1	ENST00000390654	human	ensembl	74_37	-1	known	missense	c.887	p.A296V	0.435	pfam_Collagen	pfam_Collagen	-	no_errors	COL23A1	HGNC	ENSG00000050767				227	0	0	162	66	28.9474
COL23A1	0	genome.wustl.edu	37	5	177987735	177987735	+	Silent	SNP	T	T	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	5	177987735	177987735	T	C	SNP	COL23A1	ENST00000390654	human	ensembl	74_37	-1	known	silent	c.309	p.L103	0.010	NULL	pfam_Collagen	-	no_errors	COL23A1	HGNC	ENSG00000050767				24	0	0	18	4	18.1818
FLT4	0	genome.wustl.edu	37	5	180048190	180048190	+	Silent	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	5	180048190	180048190	G	A	SNP	FLT4	ENST00000261937	human	ensembl	74_37	-1	known	silent	c.2083	p.L695	0.997	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Ig_I-set,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,prints_VEGFR3_rcpt	-	no_errors	FLT4	HGNC	ENSG00000037280				65	0	0	46	18	28.125
MGAT1	0	genome.wustl.edu	37	5	180218991	180218991	+	Silent	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	5	180218991	180218991	C	T	SNP	MGAT1	ENST00000307826	human	ensembl	74_37	-1	known	silent	c.981	p.Q327	1.000	pfam_Glyco_trans_13	pfam_Glyco_trans_13	-	no_errors	MGAT1	HGNC	ENSG00000131446				113	0	0	63	26	29.2135
BTNL9	0	genome.wustl.edu	37	5	180486594	180486594	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	5	180486594	180486594	G	A	SNP	BTNL9	ENST00000376842	human	ensembl	74_37	+1	known	missense	c.1343	p.R448Q	0.002	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl_sf,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,prints_Butyrophylin	pfam_SPRY_rcpt,pfam_Ig_V-set,superfamily_ConA-like_lec_gl_sf,smart_Ig_sub,smart_Ig_V-set_subgr,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Ig-like_dom,prints_Butyrophylin	-	no_errors	BTNL9	HGNC	ENSG00000165810				61	0	0	36	15	29.4118
CDH12	0	genome.wustl.edu	37	5	21802401	21802401	+	Silent	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	5	21802401	21802401	G	A	SNP	CDH12	ENST00000382254	human	ensembl	74_37	-1	known	silent	c.1131	p.D377	0.595	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH12	HGNC	ENSG00000154162				49	0	0	46	28	37.8378
CDH10	0	genome.wustl.edu	37	5	24493022	24493022	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	5	24493022	24493022	T	G	SNP	CDH10	ENST00000264463	human	ensembl	74_37	-1	known	missense	c.1528	p.I510L	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	CDH10	HGNC	ENSG00000040731				200	0	0	182	36	16.5138
IRX2	0	genome.wustl.edu	37	5	2749790	2749790	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	5	2749790	2749790	C	G	SNP	IRX2	ENST00000302057	human	ensembl	74_37	-1	known	missense	c.361	p.A121P	1.000	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,smart_Iroquois_homeo,pfscan_Homeobox_dom	-	no_errors	IRX2	HGNC	ENSG00000170561				113	0	0	60	49	44.9541
C5orf22	0	genome.wustl.edu	37	5	31534401	31534401	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	5	31534401	31534401	C	T	SNP	C5orf22	ENST00000325366	human	ensembl	74_37	+1	known	missense	c.104	p.A35V	1.000	NULL	superfamily_ICAT	-	no_errors	C5orf22	HGNC	ENSG00000082213				96	0	0	103	24	18.8976
ZFR	0	genome.wustl.edu	37	5	32417836	32417836	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	5	32417836	32417836	T	A	SNP	ZFR	ENST00000265069	human	ensembl	74_37	-1	known	missense	c.482	p.Y161F	1.000	NULL	pfam_DZF,pfam_Znf_C2H2_jaz,smart_Znf_U1,smart_Znf_C2H2-like,smart_DZF	-	no_errors	ZFR	HGNC	ENSG00000056097				123	0	0	104	28	21.2121
ADAMTS12	0	genome.wustl.edu	37	5	33658358	33658358	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	5	33658358	33658358	C	T	SNP	ADAMTS12	ENST00000504830	human	ensembl	74_37	-1	known	missense	c.1121	p.R374H	1.000	pfam_Peptidase_M12B,pfscan_Peptidase_M12B	pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS12	HGNC	ENSG00000151388				239	0	0	242	30	11.0294
C1QTNF3	0	genome.wustl.edu	37	5	34043119	34043119	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	5	34043119	34043119	C	T	SNP	C1QTNF3	ENST00000382065	human	ensembl	74_37	-1	known	missense	c.112	p.A38T	1.000	NULL	pfam_C1q,pfam_Collagen,superfamily_Tumour_necrosis_fac-like_dom,smart_C1q,pfscan_C1q,prints_C1q	-	no_errors	C1QTNF3	HGNC	ENSG00000082196				317	0	0	256	62	19.4969
C9	0	genome.wustl.edu	37	5	39288948	39288948	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	5	39288948	39288948	T	C	SNP	C9	ENST00000263408	human	ensembl	74_37	-1	known	missense	c.1522	p.R508G	0.014	NULL	pfam_MACPF,pfam_LDrepeatLR_classA_rpt,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,superfamily_LDrepeatLR_classA_rpt,smart_Thrombospondin_1_rpt,smart_LDrepeatLR_classA_rpt,smart_MACPF,prints_MAC_perforin,pfscan_LDrepeatLR_classA_rpt,pfscan_Thrombospondin_1_rpt	-	no_errors	C9	HGNC	ENSG00000113600				204	0	0	201	38	15.8996
C9	0	genome.wustl.edu	37	5	39316123	39316123	+	Silent	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	5	39316123	39316123	G	A	SNP	C9	ENST00000263408	human	ensembl	74_37	-1	known	silent	c.624	p.G208	0.963	NULL	pfam_MACPF,pfam_LDrepeatLR_classA_rpt,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,superfamily_LDrepeatLR_classA_rpt,smart_Thrombospondin_1_rpt,smart_LDrepeatLR_classA_rpt,smart_MACPF,prints_MAC_perforin,pfscan_LDrepeatLR_classA_rpt,pfscan_Thrombospondin_1_rpt	-	no_errors	C9	HGNC	ENSG00000113600				50	0	0	46	20	30.303
C6	0	genome.wustl.edu	37	5	41201782	41201782	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	5	41201782	41201782	A	T	SNP	C6	ENST00000263413	human	ensembl	74_37	-1	known	missense	c.178	p.F60I	0.674	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_MACPF,pfam_Sushi_SCR_CCP,pfam_Thrombospondin_1_rpt,pfam_LDrepeatLR_classA_rpt,pfam_Kazal_dom,superfamily_Sushi_SCR_CCP,superfamily_Thrombospondin_1_rpt,superfamily_LDrepeatLR_classA_rpt,smart_Thrombospondin_1_rpt,smart_LDrepeatLR_classA_rpt,smart_MACPF,smart_Sushi_SCR_CCP,smart_FacI_MAC,prints_MAC_perforin,pfscan_LDrepeatLR_classA_rpt,pfscan_Sushi_SCR_CCP,pfscan_Thrombospondin_1_rpt	-	no_errors	C6	HGNC	ENSG00000039537				108	0	0	104	19	15.4472
SNX18	0	genome.wustl.edu	37	5	53814454	53814454	+	Silent	SNP	C	C	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	5	53814454	53814454	C	A	SNP	SNX18	ENST00000326277	human	ensembl	74_37	+1	known	silent	c.672	p.T224	0.141	pirsf_Snx9	pfam_Sorting_nexin_WASP-bd-dom,pfam_Phox,pfam_SH3_domain,pfam_SH3_2,superfamily_Phox,superfamily_SH3_domain,smart_SH3_domain,smart_Phox,pirsf_Snx9,pfscan_Phox,pfscan_SH3_domain	-	no_errors	SNX18	HGNC	ENSG00000178996				72	0	0	48	24	33.3333
IL6ST	0	genome.wustl.edu	37	5	55247857	55247857	+	Silent	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	5	55247857	55247857	G	A	SNP	IL6ST	ENST00000336909	human	ensembl	74_37	-1	known	silent	c.1599	p.N533	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_IgC2-like_lig-bd,pfam_Fibronectin_type3,pfam_IL-6_rcpt_alpha-bd,pfam_Growth/epo_recpt_lig-bind,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	IL6ST	HGNC	ENSG00000134352				49	0	0	32	17	34.6939
SETD9	0	genome.wustl.edu	37	5	56209799	56209799	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	5	56209799	56209799	T	C	SNP	SETD9	ENST00000285947	human	ensembl	74_37	+1	known	missense	c.689	p.V230A	1.000	NULL	NULL	-	no_errors	SETD9	HGNC	ENSG00000155542				49	0	0	52	4	7.14286
HTR1A	0	genome.wustl.edu	37	5	63257304	63257304	+	Silent	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	5	63257304	63257304	G	A	SNP	HTR1A	ENST00000323865	human	ensembl	74_37	-1	known	silent	c.243	p.T81	0.980	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_5HT1A_rcpt,prints_GPCR_Rhodpsn,prints_5HT_rcpt,prints_NPY_rcpt	-	no_errors	HTR1A	HGNC	ENSG00000178394				24	0	0	19	7	26.9231
CEP72	0	genome.wustl.edu	37	5	653259	653259	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	5	653259	653259	G	T	SNP	CEP72	ENST00000264935	human	ensembl	74_37	+1	known	missense	c.1935	p.Q645H	0.003	NULL	smart_Leu-rich_rpt_typical-subtyp,smart_U2A'_phosphoprotein32A_C	-	no_errors	CEP72	HGNC	ENSG00000112877				43	0	0	44	11	20
OCLN	0	genome.wustl.edu	37	5	68805114	68805114	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	5	68805114	68805114	G	A	SNP	OCLN	ENST00000355237	human	ensembl	74_37	+1	known	missense	c.197	p.R66Q	1.000	pfam_Marvel,pirsf_Occludin	pfam_Occludin_RNApol2_elong_fac_ELL,pfam_Marvel,pirsf_Occludin,prints_Occludin	-	no_errors	OCLN	HGNC	ENSG00000197822				226	0	0	158	65	29.148
MAP1B	0	genome.wustl.edu	37	5	71490958	71490958	+	Silent	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	5	71490958	71490958	G	A	SNP	MAP1B	ENST00000296755	human	ensembl	74_37	+1	known	silent	c.1776	p.K592	1.000	NULL	pfam_MAP1B_neuraxin	-	no_errors	MAP1B	HGNC	ENSG00000131711				76	0	0	67	23	25.5556
FAM169A	0	genome.wustl.edu	37	5	74130280	74130280	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	5	74130280	74130280	G	A	SNP	FAM169A	ENST00000389156	human	ensembl	74_37	-1	known	missense	c.461	p.A154V	1.000	NULL	NULL	-	no_errors	FAM169A	HGNC	ENSG00000198780				94	0	0	72	26	26.5306
HMGCR	0	genome.wustl.edu	37	5	74643075	74643075	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	5	74643075	74643075	C	T	SNP	HMGCR	ENST00000287936	human	ensembl	74_37	+1	known	missense	c.497	p.P166L	1.000	pfam_Patched,pfscan_SSD,tigrfam_HMG_CoA_Rdtase_metazoan	pfam_HMG_CoA_Rdtase,pfam_Patched,superfamily_HMG_CoA_Rdtase_sub-bd,superfamily_HMG_CoA_Rdtase_NAD(P)-bd,pfscan_SSD,pfscan_HMG_CoA_Rdtase,prints_HMG_CoA_Rdtase,tigrfam_HMG_CoA_Rdtase_metazoan,tigrfam_HMG_CoA_Rdtase_eu_arc	-	no_errors	HMGCR	HGNC	ENSG00000113161				456	0	0	456	25	5.19751
WDR41	0	genome.wustl.edu	37	5	76785281	76785281	+	Splice_Site	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	5	76785281	76785281	C	T	SNP	WDR41	ENST00000296679	human	ensembl	74_37	-1	known	splice_site	c.167+1	e2+1	1.000	-	-	-	no_errors	WDR41	HGNC	ENSG00000164253				177	0	0	200	13	6.10329
CMYA5	0	genome.wustl.edu	37	5	79027504	79027504	+	Silent	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	5	79027504	79027504	C	T	SNP	CMYA5	ENST00000446378	human	ensembl	74_37	+1	known	silent	c.2916	p.C972	0.004	NULL	pfam_Fibronectin_type3,pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_B30.2/SPRY,pfscan_Fibronectin_type3	-	no_errors	CMYA5	HGNC	ENSG00000164309				56	0	0	49	27	35.5263
SIM1	0	genome.wustl.edu	37	6	100896103	100896103	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	6	100896103	100896103	G	T	SNP	SIM1	ENST00000262901	human	ensembl	74_37	-1	known	missense	c.769	p.P257T	1.000	pfam_PAS_fold_3,superfamily_PAS,smart_PAS,pfscan_PAS	pfam_SIM_C,pfam_PAS_fold_3,pfam_PAS_fold,pfam_bHLH_dom,superfamily_PAS,superfamily_bHLH_dom,smart_bHLH_dom,smart_PAS,smart_PAC,pfscan_PAS,pfscan_bHLH_dom	-	no_errors	SIM1	HGNC	ENSG00000112246				35	0	0	16	11	40.7407
BVES	0	genome.wustl.edu	37	6	105563668	105563668	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	6	105563668	105563668	C	T	SNP	BVES	ENST00000314641	human	ensembl	74_37	-1	known	missense	c.851	p.C284Y	1.000	NULL	pfam_Popeye_prot,superfamily_cNMP-bd-like	-	no_errors	BVES	HGNC	ENSG00000112276				130	0	0	91	65	41.6667
CDC40	0	genome.wustl.edu	37	6	110530384	110530384	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	6	110530384	110530384	G	T	SNP	CDC40	ENST00000307731	human	ensembl	74_37	+1	known	missense	c.588	p.W196C	1.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	CDC40	HGNC	ENSG00000168438				102	0	0	103	28	21.374
REV3L	0	genome.wustl.edu	37	6	111697457	111697457	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	6	111697457	111697457	T	C	SNP	REV3L	ENST00000358835	human	ensembl	74_37	-1	known	missense	c.2101	p.T701A	0.640	superfamily_RNaseH-like_dom	pfam_DNA-dir_DNA_pol_B_multi_dom,pfam_DNA-dir_DNA_pol_B_exonuc,superfamily_RNaseH-like_dom,smart_DNA-dir_DNA_pol_B,prints_DNA-dir_DNA_pol_B	-	no_errors	REV3L	HGNC	ENSG00000009413				112	0	0	73	75	50.6757
COL10A1	0	genome.wustl.edu	37	6	116442889	116442889	+	Silent	SNP	T	T	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	6	116442889	116442889	T	A	SNP	COL10A1	ENST00000243222	human	ensembl	74_37	-1	known	silent	c.390	p.G130	0.432	pfam_Collagen	pfam_Collagen,pfam_C1q,superfamily_Tumour_necrosis_fac-like_dom,smart_C1q,pfscan_C1q,prints_C1q	-	no_errors	COL10A1	HGNC	ENSG00000123500				61	0	0	50	10	16.6667
FAM184A	0	genome.wustl.edu	37	6	119285926	119285926	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	6	119285926	119285926	T	G	SNP	FAM184A	ENST00000338891	human	ensembl	74_37	-1	known	missense	c.3044	p.K1015T	1.000	NULL	superfamily_Prefoldin	-	no_errors	FAM184A	HGNC	ENSG00000111879				26	0	0	20	7	25.9259
PTPRK	0	genome.wustl.edu	37	6	128505813	128505813	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	6	128505813	128505813	A	G	SNP	PTPRK	ENST00000368227	human	ensembl	74_37	-1	known	missense	c.926	p.L309P	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_MAM_dom,pfam_Fibronectin_type3,pfam_Ig_I-set,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_MAM_dom,smart_Ig_sub,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_MAM_dom,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like_dom,prints_Tyr_Pase_rcpt/non-rcpt,prints_MAM_dom	-	no_errors	PTPRK	HGNC	ENSG00000152894				155	0	0	138	33	19.2982
LAMA2	0	genome.wustl.edu	37	6	129781432	129781432	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	6	129781432	129781432	C	T	SNP	LAMA2	ENST00000421865	human	ensembl	74_37	+1	known	nonsense	c.6955	p.R2319*	1.000	superfamily_ConA-like_lec_gl_sf,pfscan_Laminin_G	pfam_Laminin_G,pfam_EGF_laminin,pfam_Laminin_N,pfam_Laminin_I,pfam_Laminin_B_type_IV,pfam_Laminin_II,superfamily_ConA-like_lec_gl_sf,superfamily_Galactose-bd-like,superfamily_t-SNARE,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	LAMA2	HGNC	ENSG00000196569				161	0	0	162	41	20.197
ARG1	0	genome.wustl.edu	37	6	131904532	131904532	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	6	131904532	131904532	G	A	SNP	ARG1	ENST00000356962	human	ensembl	74_37	+1	known	missense	c.727	p.G243R	1.000	pfam_Ureohydrolase,prints_Ureohydrolase,tigrfam_Arginase	pfam_Ureohydrolase,prints_Ureohydrolase,tigrfam_Arginase	-	no_errors	ARG1	HGNC	ENSG00000118520				115	0	0	80	45	36
TAAR6	0	genome.wustl.edu	37	6	132892319	132892319	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	6	132892319	132892319	A	G	SNP	TAAR6	ENST00000275198	human	ensembl	74_37	+1	known	missense	c.859	p.I287V	0.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_TAAR_fam	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_TAAR_fam	-	no_errors	TAAR6	HGNC	ENSG00000146383				168	0	0	114	86	43
BCLAF1	0	genome.wustl.edu	37	6	136599456	136599456	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	6	136599456	136599456	T	C	SNP	BCLAF1	ENST00000531224	human	ensembl	74_37	-1	known	missense	c.563	p.K188R	1.000	NULL	NULL	-	no_errors	BCLAF1	HGNC	ENSG00000029363				406	0	0	530	48	8.3045
KIAA1244	0	genome.wustl.edu	37	6	138584224	138584224	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	6	138584224	138584224	G	A	SNP	KIAA1244	ENST00000251691	human	ensembl	74_37	+1	known	missense	c.1604	p.S535N	0.001	superfamily_ARM-type_fold	pfam_DUF1981_Sec7_assoc,superfamily_ARM-type_fold,superfamily_Sec7_dom,smart_Sec7_dom	-	no_errors	KIAA1244	HGNC	ENSG00000112379				28	0	0	31	8	20.5128
FOXF2	0	genome.wustl.edu	37	6	1390547	1390547	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	6	1390547	1390547	C	T	SNP	FOXF2	ENST00000259806	human	ensembl	74_37	+1	known	missense	c.365	p.T122M	1.000	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXF2	HGNC	ENSG00000137273				43	0	0	29	29	50
TXLNB	0	genome.wustl.edu	37	6	139563773	139563773	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	6	139563773	139563773	C	T	SNP	TXLNB	ENST00000358430	human	ensembl	74_37	-1	known	missense	c.1945	p.E649K	0.954	NULL	pfam_Taxilin_fam	-	no_errors	TXLNB	HGNC	ENSG00000164440				171	1	0.581395	93	59	38.8158
UTRN	0	genome.wustl.edu	37	6	144898277	144898277	+	Silent	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	6	144898277	144898277	G	A	SNP	UTRN	ENST00000367545	human	ensembl	74_37	+1	known	silent	c.7332	p.T2444	0.000	pirsf_Dystrophin/utrophin	pfam_Spectrin_repeat,pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_CH-domain,pfam_Znf_ZZ,pfam_WW_dom,superfamily_CH-domain,superfamily_WW_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_WW_dom,smart_Znf_ZZ,pirsf_Dystrophin/utrophin,pfscan_CH-domain,pfscan_WW_dom,pfscan_Znf_ZZ	-	no_errors	UTRN	HGNC	ENSG00000152818				73	0	0	42	45	51.7241
EPM2A	0	genome.wustl.edu	37	6	145948713	145948713	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	6	145948713	145948713	C	T	SNP	EPM2A	ENST00000367519	human	ensembl	74_37	-1	known	missense	c.835	p.G279S	1.000	pfam_Dual-sp_phosphatase_cat-dom,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Tyr/Dual-sp_Pase,pfscan_Dual-sp_phosphatase_subgr_cat	pfam_Dual-sp_phosphatase_cat-dom,pfam_CBM_fam20,superfamily_Carb-bd-like_fold,smart_Dual-sp_phosphatase_subgr_cat,pfscan_CBM_fam20,pfscan_Tyr/Dual-sp_Pase,pfscan_Dual-sp_phosphatase_subgr_cat	-	no_errors	EPM2A	HGNC	ENSG00000112425				120	0	0	107	6	5.30973
SHPRH	0	genome.wustl.edu	37	6	146247355	146247355	+	Silent	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	6	146247355	146247355	G	A	SNP	SHPRH	ENST00000367503	human	ensembl	74_37	-1	known	silent	c.3306	p.G1102	1.000	superfamily_P-loop_NTPase	pfam_SNF2_N,pfam_Histone_H1/H5_H15,superfamily_P-loop_NTPase,superfamily_Znf_FYVE_PHD,superfamily_WW_dom,smart_Helicase_ATP-bd,smart_Histone_H1/H5_H15,smart_Znf_PHD,smart_Znf_RING,smart_Helicase_C,pfscan_Znf_RING,pfscan_Helicase_C	-	no_errors	SHPRH	HGNC	ENSG00000146414				162	0	0	165	40	19.5122
GRM1	0	genome.wustl.edu	37	6	146755082	146755082	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	6	146755082	146755082	G	A	SNP	GRM1	ENST00000282753	human	ensembl	74_37	+1	known	missense	c.2735	p.R912H	1.000	NULL	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_Metabotropic_Glu_rcpt_Homer-bd,pfam_GPCR_3_9-Cys_dom,superfamily_Peripla_BP_I,pfscan_GPCR_3_C,prints_GPCR_3_mtglu_rcpt_1,prints_GPCR_3,prints_GPCR_3_mtglu_rcpt,prints_GPCR_3_mtglu_rcpt_5	-	no_errors	GRM1	HGNC	ENSG00000152822				113	0	0	65	48	42.4779
SUMO4	0	genome.wustl.edu	37	6	149721537	149721537	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	6	149721537	149721537	G	A	SNP	SUMO4	ENST00000326669	human	ensembl	74_37	+1	known	missense	c.10	p.E4K	0.705	NULL	pfam_Rad60/SUMO_like,pfam_Ubiquitin_dom,smart_Ubiquitin_dom,pfscan_Ubiquitin_supergroup	-	no_errors	SUMO4	HGNC	ENSG00000177688				72	0	0	78	17	17.8947
ULBP3	0	genome.wustl.edu	37	6	150385828	150385828	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	6	150385828	150385828	C	T	SNP	ULBP3	ENST00000367339	human	ensembl	74_37	-1	known	missense	c.650	p.G217D	0.000	NULL	pfam_MHC_I_a_a1/a2,superfamily_MHC_I/II-like_Ag-recog	-	no_errors	ULBP3	HGNC	ENSG00000131019				112	1	0.884956	126	9	6.66667
MTHFD1L	0	genome.wustl.edu	37	6	151281413	151281413	+	Silent	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	6	151281413	151281413	G	A	SNP	MTHFD1L	ENST00000367321	human	ensembl	74_37	+1	known	silent	c.1806	p.A602	0.042	pfam_Formate_THF_ligase,superfamily_P-loop_NTPase	pfam_Formate_THF_ligase,pfam_THF_DH/CycHdrlase_NAD-bd_dom,pfam_THF_DH/CycHdrlase_cat_dom,superfamily_P-loop_NTPase,prints_THF_DH/CycHdrlase	-	no_errors	MTHFD1L	HGNC	ENSG00000120254				105	0	0	70	37	34.5794
AKAP12	0	genome.wustl.edu	37	6	151670579	151670579	+	Silent	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	6	151670579	151670579	C	T	SNP	AKAP12	ENST00000253332	human	ensembl	74_37	+1	known	silent	c.1053	p.T351	0.000	NULL	pfam_Pkinase-A_anch_WSK-motif,pfam_RII_binding_1	-	no_errors	AKAP12	HGNC	ENSG00000131016				119	0	0	92	83	47.4286
MYCT1	0	genome.wustl.edu	37	6	153043068	153043068	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	6	153043068	153043068	G	A	SNP	MYCT1	ENST00000367245	human	ensembl	74_37	+1	known	missense	c.388	p.G130S	1.000	NULL	NULL	-	no_errors	MYCT1	HGNC	ENSG00000120279				150	0	0	182	28	13.3333
TFB1M	0	genome.wustl.edu	37	6	155635562	155635562	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	6	155635562	155635562	T	C	SNP	TFB1M	ENST00000367166	human	ensembl	74_37	-1	known	missense	c.1	p.M1V	0.999	NULL	pfam_rRNA_Ade_methylase_transferase,smart_rRNA_Ade_methylase_Trfase_N	-	no_errors	TFB1M	HGNC	ENSG00000029639				66	0	0	62	23	27.0588
TMEM242	0	genome.wustl.edu	37	6	157744464	157744464	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	6	157744464	157744464	T	A	SNP	TMEM242	ENST00000400788	human	ensembl	74_37	-1	known	missense	c.68	p.D23V	0.791	pfam_DUF1358	pfam_DUF1358	-	no_errors	TMEM242	HGNC	ENSG00000215712				358	0	0	415	32	7.15884
TULP4	0	genome.wustl.edu	37	6	158923938	158923938	+	Silent	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	6	158923938	158923938	C	T	SNP	TULP4	ENST00000367097	human	ensembl	74_37	+1	known	silent	c.3243	p.T1081	0.999	NULL	pfam_Tubby_C,pfam_SOCS_C,pfam_WD40_repeat,superfamily_Tubby_C-like,superfamily_WD40_repeat_dom,superfamily_Tumour_necrosis_fac-like_dom,smart_WD40_repeat,smart_SOCS_C,pfscan_SOCS_C,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	TULP4	HGNC	ENSG00000130338				138	0	0	122	26	17.5676
RSPH3	0	genome.wustl.edu	37	6	159399367	159399367	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	6	159399367	159399367	C	A	SNP	RSPH3	ENST00000252655	human	ensembl	74_37	-1	known	nonsense	c.1297	p.G433*	0.110	pfam_Radial_spoke_3	pfam_Radial_spoke_3	-	no_errors	RSPH3	HGNC	ENSG00000130363				20	0	0	21	8	27.5862
WTAP	0	genome.wustl.edu	37	6	160163047	160163047	+	RNA	SNP	T	T	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	6	160163047	160163047	T	A	SNP	WTAP	ENST00000462110	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	WTAP	HGNC	ENSG00000146457				28	0	0	18	6	25
IGF2R	0	genome.wustl.edu	37	6	160483631	160483631	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	6	160483631	160483631	G	T	SNP	IGF2R	ENST00000356956	human	ensembl	74_37	+1	known	missense	c.3650	p.C1217F	0.998	pfam_CIMR,superfamily_Man6P_isomerase_rcpt-bd_dom	pfam_CIMR,pfam_FN_type2_col-bd,superfamily_Man6P_isomerase_rcpt-bd_dom,superfamily_Kringle-like,smart_FN_type2_col-bd,pfscan_FN_type2_col-bd	-	no_errors	IGF2R	HGNC	ENSG00000197081				83	0	0	56	48	46.1538
RPS6KA2	0	genome.wustl.edu	37	6	166833418	166833418	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	6	166833418	166833418	G	A	SNP	RPS6KA2	ENST00000510118	human	ensembl	74_37	-1	known	missense	c.1847	p.A616V	0.998	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Ribosomal_S6_kinase_II,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Ribosomal_S6_kinase_II,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	RPS6KA2	HGNC	ENSG00000071242				49	0	0	43	25	36.7647
KIF25	0	genome.wustl.edu	37	6	168439368	168439368	+	Silent	SNP	A	A	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	6	168439368	168439368	A	G	SNP	KIF25	ENST00000354419	human	ensembl	74_37	+1	known	silent	c.453	p.T151	0.001	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF25	HGNC	ENSG00000125337				142	0	0	152	50	24.7525
TBP	0	genome.wustl.edu	37	6	170871016	170871016	+	Silent	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	6	170871016	170871016	G	A	SNP	TBP	ENST00000230354	human	ensembl	74_37	+1	known	silent	c.192	p.Q64	1.000	NULL	pfam_TBP,prints_TBP	-	no_errors	TBP	HGNC	ENSG00000112592				54	0	0	64	17	20.9877
GPLD1	0	genome.wustl.edu	37	6	24436838	24436838	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	6	24436838	24436838	C	T	SNP	GPLD1	ENST00000230036	human	ensembl	74_37	-1	known	missense	c.2324	p.C775Y	1.000	prints_Gprt_PLipase_D	pfam_FG-GAP,smart_Int_alpha_beta-p,prints_Gprt_PLipase_D	-	no_errors	GPLD1	HGNC	ENSG00000112293				160	0	0	168	41	19.6172
HIST1H1A	0	genome.wustl.edu	37	6	26017954	26017954	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	6	26017954	26017954	C	T	SNP	HIST1H1A	ENST00000244573	human	ensembl	74_37	-1	known	missense	c.7	p.E3K	0.908	NULL	pfam_Histone_H1/H5_H15,smart_Histone_H1/H5_H15,prints_Histone_H5	-	no_errors	HIST1H1A	HGNC	ENSG00000124610				81	0	0	77	17	18.0851
HIST1H4G	0	genome.wustl.edu	37	6	26247036	26247036	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	6	26247036	26247036	C	T	SNP	HIST1H4G	ENST00000244537	human	ensembl	74_37	-1	known	missense	c.170	p.R57Q	1.000	pfam_Histone_core_D,superfamily_Histone-fold,smart_Histone_H4,prints_Histone_H4	pfam_Histone_core_D,superfamily_Histone-fold,smart_Histone_H4,prints_Histone_H4	-	no_errors	HIST1H4G	HGNC	ENSG00000124578				55	0	0	37	12	24.4898
HIST1H2AM	0	genome.wustl.edu	37	6	27860700	27860700	+	Silent	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	6	27860700	27860700	C	T	SNP	HIST1H2AM	ENST00000359611	human	ensembl	74_37	-1	known	silent	c.228	p.K76	1.000	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2A,prints_Histone_H2A	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2A,prints_Histone_H2A	-	no_errors	HIST1H2AM	HGNC	ENSG00000233224				251	1	0.396825	199	62	23.7548
HLA-A	0	genome.wustl.edu	37	6	29911150	29911150	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	6	29911150	29911150	T	C	SNP	HLA-A	ENST00000376806	human	ensembl	74_37	+1	known	missense	c.449	p.L150P	0.989	pfam_MHC_I_a_a1/a2,superfamily_MHC_I/II-like_Ag-recog,prints_MHC_I_a	pfam_MHC_I_a_a1/a2,pfam_Ig_C1-set,pfam_MHC_I_a_C,superfamily_MHC_I/II-like_Ag-recog,smart_Ig_C1-set,pfscan_Ig-like_dom,prints_MHC_I_a	-	no_errors	HLA-A	HGNC	ENSG00000206503				63	0	0	58	10	14.7059
TRIM40	0	genome.wustl.edu	37	6	30114888	30114888	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	6	30114888	30114888	G	A	SNP	TRIM40	ENST00000376724	human	ensembl	74_37	+1	known	missense	c.568	p.A190T	0.000	NULL	pfam_Znf_C3HC4_RING-type,superfamily_tRNA-bd_arm,smart_Znf_RING,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM40	HGNC	ENSG00000204614				53	0	0	67	24	26.3736
PPP1R18	0	genome.wustl.edu	37	6	30653521	30653521	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	6	30653521	30653521	C	T	SNP	PPP1R18	ENST00000274853	human	ensembl	74_37	-1	known	missense	c.275	p.R92Q	0.998	NULL	NULL	-	no_errors	PPP1R18	HGNC	ENSG00000146112				81	0	0	84	12	12.5
MDC1	0	genome.wustl.edu	37	6	30680469	30680469	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	6	30680469	30680469	G	A	SNP	MDC1	ENST00000376406	human	ensembl	74_37	-1	known	missense	c.1250	p.A417V	0.056	NULL	pfam_FHA_dom,superfamily_BRCT_dom,superfamily_SMAD_FHA_domain,smart_FHA_dom,pfscan_BRCT_dom,pfscan_FHA_dom	-	no_errors	MDC1	HGNC	ENSG00000137337				68	0	0	60	53	46.9027
MICB	0	genome.wustl.edu	37	6	31473919	31473919	+	Splice_Site	SNP	G	G	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	6	31473919	31473919	G	T	SNP	MICB	ENST00000252229	human	ensembl	74_37	+1	known	splice_site	c.326-1	e3-1	0.249	-	-	-	no_errors	MICB	HGNC	ENSG00000204516				30	0	0	22	17	43.5897
AIF1	0	genome.wustl.edu	37	6	31584673	31584673	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	6	31584673	31584673	C	T	SNP	AIF1	ENST00000376059	human	ensembl	74_37	+1	known	missense	c.440	p.P147L	1.000	NULL	pfscan_EF_hand_dom	-	no_errors	AIF1	HGNC	ENSG00000204472				49	0	0	51	14	21.5385
ABHD16A	0	genome.wustl.edu	37	6	31668789	31668789	+	Silent	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	6	31668789	31668789	G	A	SNP	ABHD16A	ENST00000395952	human	ensembl	74_37	-1	known	silent	c.273	p.S91	1.000	NULL	pfam_AB_hydrolase_1	-	no_errors	ABHD16A	HGNC	ENSG00000204427				31	0	0	30	8	21.0526
NELFE	0	genome.wustl.edu	37	6	31922385	31922385	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	6	31922385	31922385	C	T	SNP	NELFE	ENST00000375429	human	ensembl	74_37	-1	known	missense	c.689	p.R230Q	0.130	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	NELFE	HGNC	ENSG00000204356				42	0	0	39	12	23.5294
HLA-DRA	0	genome.wustl.edu	37	6	32410986	32410986	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	6	32410986	32410986	C	T	SNP	HLA-DRA	ENST00000395388	human	ensembl	74_37	+1	known	missense	c.353	p.T118I	0.001	pfscan_Ig-like_dom	pfam_MHC_II_a_N,pfam_Ig_C1-set,superfamily_MHC_I/II-like_Ag-recog,smart_MHC_II_a_N,smart_Ig_C1-set,pfscan_Ig-like_dom	-	no_errors	HLA-DRA	HGNC	ENSG00000204287				76	0	0	64	36	36
BRD2	0	genome.wustl.edu	37	6	32948188	32948188	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	6	32948188	32948188	G	A	SNP	BRD2	ENST00000395289	human	ensembl	74_37	+1	known	missense	c.2321	p.R774Q	1.000	NULL	pfam_Bromodomain,superfamily_Bromodomain,smart_Bromodomain,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BRD2	HGNC	ENSG00000204256				133	0	0	135	42	23.7288
COL11A2	0	genome.wustl.edu	37	6	33133489	33133489	+	Silent	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	6	33133489	33133489	C	T	SNP	COL11A2	ENST00000341947	human	ensembl	74_37	-1	known	silent	c.4587	p.P1529	0.001	NULL	pfam_Collagen,pfam_Fib_collagen_C,pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,superfamily_Fibrinogen_a/b/g_C_dom,smart_Laminin_G,smart_Fib_collagen_C	-	no_errors	COL11A2	HGNC	ENSG00000204248				144	0	0	127	34	21.118
VPS52	0	genome.wustl.edu	37	6	33236883	33236883	+	Silent	SNP	T	T	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	6	33236883	33236883	T	C	SNP	VPS52	ENST00000445902	human	ensembl	74_37	-1	known	silent	c.456	p.G152	1.000	pfam_Vps52,pfam_Exocyst_Exoc1/SEC3	pfam_Vps52,pfam_Exocyst_Exoc1/SEC3	-	no_errors	VPS52	HGNC	ENSG00000223501				289	0	0	289	68	19.0476
RGL2	0	genome.wustl.edu	37	6	33259893	33259893	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	6	33259893	33259893	G	A	SNP	RGL2	ENST00000497454	human	ensembl	74_37	-1	known	missense	c.2320	p.R774W	1.000	NULL	pfam_RasGRF_CDC25,pfam_Ras-assoc,pfam_Ras-like_Gua-exchang_fac_N,superfamily_Ras_GEF_dom,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,smart_Ras-assoc,pfscan_Ras-assoc,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RGL2	HGNC	ENSG00000237441				76	0	0	79	5	5.95238
DAXX	0	genome.wustl.edu	37	6	33287897	33287897	+	Silent	SNP	T	T	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	6	33287897	33287897	T	C	SNP	DAXX	ENST00000266000	human	ensembl	74_37	-1	known	silent	c.1356	p.E452	0.482	pfam_Daxx	pfam_Daxx	-	no_errors	DAXX	HGNC	ENSG00000204209				49	0	0	63	18	22.2222
DAXX	0	genome.wustl.edu	37	6	33288217	33288217	+	Silent	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	6	33288217	33288217	C	T	SNP	DAXX	ENST00000266000	human	ensembl	74_37	-1	known	silent	c.1191	p.R397	0.059	pfam_Daxx	pfam_Daxx	-	no_errors	DAXX	HGNC	ENSG00000204209				167	0	0	174	45	20.5479
SYNGAP1	0	genome.wustl.edu	37	6	33400582	33400582	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	6	33400582	33400582	C	T	SNP	SYNGAP1	ENST00000418600	human	ensembl	74_37	+1	known	missense	c.508	p.R170W	1.000	smart_Pleckstrin_homology	pfam_DUF3498,pfam_RasGAP,pfam_C2_dom,superfamily_Rho_GTPase_activation_prot,superfamily_C2_dom,smart_Pleckstrin_homology,smart_C2_dom,smart_RasGAP,pfscan_Pleckstrin_homology,pfscan_RasGAP	-	no_errors	SYNGAP1	HGNC	ENSG00000197283				54	0	0	66	12	15.3846
SYNGAP1	0	genome.wustl.edu	37	6	33411637	33411637	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	6	33411637	33411637	G	A	SNP	SYNGAP1	ENST00000418600	human	ensembl	74_37	+1	known	missense	c.3308	p.R1103H	1.000	pfam_DUF3498	pfam_DUF3498,pfam_RasGAP,pfam_C2_dom,superfamily_Rho_GTPase_activation_prot,superfamily_C2_dom,smart_Pleckstrin_homology,smart_C2_dom,smart_RasGAP,pfscan_Pleckstrin_homology,pfscan_RasGAP	-	no_errors	SYNGAP1	HGNC	ENSG00000197283				56	0	0	44	25	36.2319
ITPR3	0	genome.wustl.edu	37	6	33638551	33638551	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	6	33638551	33638551	G	A	SNP	ITPR3	ENST00000374316	human	ensembl	74_37	+1	known	missense	c.2545	p.V849M	0.918	NULL	pfam_Ca-rel_channel,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ARM-type_fold,smart_MIR_motif,prints_InsP3_rcpt-bd,pfscan_MIR_motif	-	no_errors	ITPR3	HGNC	ENSG00000096433				169	1	0.588235	233	16	6.4257
TEAD3	0	genome.wustl.edu	37	6	35443481	35443481	+	Silent	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	6	35443481	35443481	G	A	SNP	TEAD3	ENST00000402886	human	ensembl	74_37	-1	novel	silent	c.723	p.A241	0.480	pfam_TEA/ATTS,pirsf_TEF	pfam_TEA/ATTS,pirsf_TEF	-	no_errors	TEAD3	HGNC	ENSG00000007866				95	0	0	82	47	36.4341
PNPLA1	0	genome.wustl.edu	37	6	36274154	36274154	+	Splice_Site	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	6	36274154	36274154	G	A	SNP	PNPLA1	ENST00000457797	human	ensembl	74_37	+1	known	splice_site	c.1472+1	e7+1	0.010	-	-	-	no_errors	PNPLA1	HGNC	ENSG00000180316				209	0	0	146	122	45.5224
MDGA1	0	genome.wustl.edu	37	6	37626035	37626035	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	6	37626035	37626035	C	T	SNP	MDGA1	ENST00000297153	human	ensembl	74_37	-1	known	missense	c.368	p.R123H	1.000	smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_MAM_dom,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_MAM_dom,pfscan_Fibronectin_type3,pfscan_MAM_dom,pfscan_Ig-like_dom	-	no_errors	MDGA1	HGNC	ENSG00000112139				17	0	0	13	11	45.8333
DNAH8	0	genome.wustl.edu	37	6	38690822	38690822	+	Silent	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	6	38690822	38690822	G	A	SNP	DNAH8	ENST00000449981	human	ensembl	74_37	+1	known	silent	c.237	p.A79	0.000	NULL	pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH8	HGNC	ENSG00000124721				75	0	0	82	18	18
PRPF4B	0	genome.wustl.edu	37	6	4044084	4044084	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	6	4044084	4044084	T	C	SNP	PRPF4B	ENST00000337659	human	ensembl	74_37	+1	known	missense	c.1688	p.V563A	0.986	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	PRPF4B	HGNC	ENSG00000112739				106	0	0	92	29	23.9669
PRPF4B	0	genome.wustl.edu	37	6	4056719	4056719	+	RNA	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	6	4056719	4056719	C	T	SNP	PRPF4B	ENST00000466185	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.063	-	-	-	no_errors	PRPF4B	HGNC	ENSG00000112739				103	0	0	96	51	34.6939
CCND3	0	genome.wustl.edu	37	6	41903835	41903835	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	6	41903835	41903835	C	T	SNP	CCND3	ENST00000372991	human	ensembl	74_37	-1	known	missense	c.722	p.R241Q	0.954	pfam_Cyclin_C-dom,superfamily_Cyclin-like,pirsf_Cyclin_A/B/D/E	pfam_Cyclin_N,pfam_Cyclin_C-dom,superfamily_Cyclin-like,smart_Cyclin-like,pirsf_Cyclin_A/B/D/E	-	no_errors	CCND3	HGNC	ENSG00000112576				50	0	0	70	10	12.5
GUCA1A	0	genome.wustl.edu	37	6	42146991	42146991	+	Silent	SNP	C	C	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	6	42146991	42146991	C	A	SNP	GUCA1A	ENST00000053469	human	ensembl	74_37	+1	known	silent	c.456	p.S152	0.302	pfam_SPARC/Testican_Ca-bd-dom,smart_EF_hand_dom,pfscan_EF_hand_dom,prints_Recoverin	pfam_EF_hand_dom,pfam_SPARC/Testican_Ca-bd-dom,smart_EF_hand_dom,pfscan_EF_hand_dom,prints_Recoverin	-	no_errors	GUCA1A	HGNC	ENSG00000048545				60	0	0	41	37	47.4359
GLTSCR1L	0	genome.wustl.edu	37	6	42797828	42797828	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	6	42797828	42797828	G	A	SNP	GLTSCR1L	ENST00000314073	human	ensembl	74_37	+1	known	missense	c.1757	p.R586H	1.000	NULL	NULL	-	no_errors	GLTSCR1L	HGNC	ENSG00000112624				118	0	0	137	11	7.43243
PEX6	0	genome.wustl.edu	37	6	42933450	42933450	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	6	42933450	42933450	G	A	SNP	PEX6	ENST00000304611	human	ensembl	74_37	-1	known	nonsense	c.2440	p.R814*	1.000	pfam_ATPase_AAA_core,superfamily_P-loop_NTPase,smart_AAA+_ATPase	pfam_ATPase_AAA_core,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	PEX6	HGNC	ENSG00000124587				467	0	0	463	147	24.0984
PTK7	0	genome.wustl.edu	37	6	43113108	43113108	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	6	43113108	43113108	C	T	SNP	PTK7	ENST00000230419	human	ensembl	74_37	+1	known	missense	c.2578	p.R860W	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Ig_I-set,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Immunoglobulin,pfam_Prot_kinase_dom,pfam_Ig_V-set,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	PTK7	HGNC	ENSG00000112655				91	0	0	82	44	34.9206
ZNF318	0	genome.wustl.edu	37	6	43323194	43323194	+	Silent	SNP	T	T	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	6	43323194	43323194	T	C	SNP	ZNF318	ENST00000361428	human	ensembl	74_37	-1	known	silent	c.1878	p.L626	0.994	NULL	smart_Znf_U1	-	no_errors	ZNF318	HGNC	ENSG00000171467				167	0	0	190	50	20.8333
CDC5L	0	genome.wustl.edu	37	6	44360532	44360532	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	6	44360532	44360532	C	T	SNP	CDC5L	ENST00000371477	human	ensembl	74_37	+1	known	missense	c.278	p.A93V	1.000	pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	pfam_DUF3351,pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	CDC5L	HGNC	ENSG00000096401				76	0	0	99	7	6.60377
PLA2G7	0	genome.wustl.edu	37	6	46679343	46679343	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	6	46679343	46679343	A	G	SNP	PLA2G7	ENST00000274793	human	ensembl	74_37	-1	known	missense	c.553	p.S185P	0.969	pfam_PAF_acetylhydro,pirsf_PAF_acetylhydro_eukaryote	pfam_PAF_acetylhydro,pirsf_PAF_acetylhydro_eukaryote	-	no_errors	PLA2G7	HGNC	ENSG00000146070				235	0	0	161	135	45.6081
DEFB110	0	genome.wustl.edu	37	6	49986805	49986805	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	6	49986805	49986805	T	C	SNP	DEFB110	ENST00000371148	human	ensembl	74_37	-1	known	missense	c.89	p.D30G	0.971	NULL	NULL	-	no_errors	DEFB110	HGNC	ENSG00000203970				180	0	0	225	29	11.4173
GCLC	0	genome.wustl.edu	37	6	53363725	53363725	+	Silent	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	6	53363725	53363725	G	A	SNP	GCLC	ENST00000229416	human	ensembl	74_37	-1	known	silent	c.1743	p.I581	0.010	pfam_GCS	pfam_GCS	-	no_errors	GCLC	HGNC	ENSG00000001084				201	0	0	231	41	15.0735
DST	0	genome.wustl.edu	37	6	56483162	56483162	+	Silent	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	6	56483162	56483162	C	T	SNP	DST	ENST00000370765	human	ensembl	74_37	-1	known	silent	c.5670	p.Q1890	0.000	NULL	pfam_Plectin_repeat,pfam_Spectrin_repeat,superfamily_Ig/albumin-bd,smart_Spectrin/alpha-actinin,smart_Plectin_repeat	-	no_errors	DST	HGNC	ENSG00000151914				64	0	0	64	25	28.0899
HUS1B	0	genome.wustl.edu	37	6	656665	656665	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	6	656665	656665	C	T	SNP	HUS1B	ENST00000380907	human	ensembl	74_37	-1	known	missense	c.280	p.A94T	0.047	pfam_Hus1/Mec3,pirsf_Cell_cycle_HUS1	pfam_Hus1/Mec3,pirsf_Cell_cycle_HUS1	-	no_errors	HUS1B	HGNC	ENSG00000188996				21	0	0	17	4	19.0476
HUS1B	0	genome.wustl.edu	37	6	656846	656846	+	Silent	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	6	656846	656846	G	A	SNP	HUS1B	ENST00000380907	human	ensembl	74_37	-1	known	silent	c.99	p.R33	0.000	pfam_Hus1/Mec3,pirsf_Cell_cycle_HUS1	pfam_Hus1/Mec3,pirsf_Cell_cycle_HUS1	-	no_errors	HUS1B	HGNC	ENSG00000188996				37	0	0	26	5	16.129
BAI3	0	genome.wustl.edu	37	6	70070871	70070871	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	6	70070871	70070871	A	T	SNP	BAI3	ENST00000370598	human	ensembl	74_37	+1	known	missense	c.3706	p.S1236C	1.000	NULL	pfam_GPCR_2_secretin-like,pfam_DUF3497,pfam_Thrombospondin_1_rpt,pfam_GPS_dom,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_CUB_dom,pfscan_GPS_dom,pfscan_Thrombospondin_1_rpt,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GPCR_2_brain-spec_angio_inhib,prints_GPCR_2_secretin-like	-	no_errors	BAI3	HGNC	ENSG00000135298				99	0	0	101	27	21.0938
RIMS1	0	genome.wustl.edu	37	6	73100438	73100438	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	6	73100438	73100438	A	C	SNP	RIMS1	ENST00000521978	human	ensembl	74_37	+1	known	missense	c.4505	p.N1502T	1.000	NULL	pfam_C2_dom,pfam_PDZ,superfamily_C2_dom,superfamily_Znf_FYVE_PHD,superfamily_PDZ,smart_PDZ,smart_C2_dom,pfscan_C2_dom,pfscan_PDZ,pfscan_Znf_FYVE-typ,pfscan_Znf_FYVE-rel	-	no_errors	RIMS1	HGNC	ENSG00000079841				68	0	0	62	14	18.4211
DPPA5	0	genome.wustl.edu	37	6	74063580	74063580	+	Silent	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	6	74063580	74063580	C	T	SNP	DPPA5	ENST00000370370	human	ensembl	74_37	-1	known	silent	c.288	p.E96	0.252	NULL	NULL	-	no_errors	DPPA5	HGNC	ENSG00000203909				25	0	0	21	22	51.1628
PHIP	0	genome.wustl.edu	37	6	79655139	79655139	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	6	79655139	79655139	C	T	SNP	PHIP	ENST00000275034	human	ensembl	74_37	-1	known	missense	c.4706	p.G1569D	1.000	NULL	pfam_WD40_repeat,pfam_Bromodomain,superfamily_Quinonprotein_ADH-like_supfam,superfamily_Bromodomain,smart_WD40_repeat,smart_Bromodomain,pfscan_Bromodomain,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Bromodomain	-	no_errors	PHIP	HGNC	ENSG00000146247				104	0	0	70	63	47.3684
PGM3	0	genome.wustl.edu	37	6	83891504	83891504	+	Silent	SNP	A	A	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	6	83891504	83891504	A	G	SNP	PGM3	ENST00000513973	human	ensembl	74_37	-1	known	silent	c.738	p.N246	0.998	pfam_A-D-PHexomutase_a/b/a-II,superfamily_A-D-PHexomutase_a/b/a-I/II/III,pirsf_PAGM	pfam_A-D-PHexomutase_a/b/a-I,pfam_A-D-PHexomutase_a/b/a-II,pfam_A-D-PHexomutase_C,superfamily_A-D-PHexomutase_a/b/a-I/II/III,pirsf_PAGM	-	no_errors	PGM3	HGNC	ENSG00000013375				144	0	0	181	10	5.2356
GABRR1	0	genome.wustl.edu	37	6	89888745	89888745	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	6	89888745	89888745	G	A	SNP	GABRR1	ENST00000454853	human	ensembl	74_37	-1	known	missense	c.1184	p.A395V	0.996	superfamily_Neurotrans-gated_channel_TM,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABAA_rcpt,prints_GABAAa_rho1_rcpt,prints_Neur_channel,prints_GABAAa_rho_rcpt,tigrfam_Neur_channel	-	no_errors	GABRR1	HGNC	ENSG00000146276				92	0	0	67	45	40.1786
CASP8AP2	0	genome.wustl.edu	37	6	90572134	90572134	+	RNA	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	6	90572134	90572134	G	A	SNP	CASP8AP2	ENST00000237177	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.992	-	-	-	no_errors	CASP8AP2	HGNC	ENSG00000118412				271	0	0	194	131	40.3077
MANEA	0	genome.wustl.edu	37	6	96053641	96053641	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	6	96053641	96053641	C	T	SNP	MANEA	ENST00000358812	human	ensembl	74_37	+1	known	missense	c.749	p.A250V	1.000	NULL	superfamily_Glycoside_hydrolase_SF	-	no_errors	MANEA	HGNC	ENSG00000172469				114	0	0	124	20	13.8889
UFL1	0	genome.wustl.edu	37	6	96974275	96974275	+	Silent	SNP	T	T	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	6	96974275	96974275	T	C	SNP	UFL1	ENST00000369278	human	ensembl	74_37	+1	known	silent	c.429	p.C143	1.000	pfam_E3_UFM1_ligase_1	pfam_E3_UFM1_ligase_1	-	no_errors	UFL1	HGNC	ENSG00000014123				178	0	0	114	112	49.5575
ZAN	0	genome.wustl.edu	37	7	100350272	100350272	+	Silent	SNP	A	A	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	7	100350272	100350272	A	G	SNP	ZAN	ENST00000546292	human	ensembl	74_37	+1	known	silent	c.2544	p.E848	0.000	NULL	pfam_VWF_type-D,pfam_MAM_dom,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_ConA-like_lec_gl_sf,superfamily_TIL_dom,smart_MAM_dom,smart_VWC_out,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_MAM_dom	-	no_errors	ZAN	HGNC	ENSG00000146839				128	0	0	142	33	18.8571
ZAN	0	genome.wustl.edu	37	7	100366269	100366269	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	7	100366269	100366269	G	A	SNP	ZAN	ENST00000546292	human	ensembl	74_37	+1	known	missense	c.5078	p.R1693H	0.000	pfam_VWF_type-D,smart_VWF_type-D	pfam_VWF_type-D,pfam_MAM_dom,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_ConA-like_lec_gl_sf,superfamily_TIL_dom,smart_MAM_dom,smart_VWC_out,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_MAM_dom	-	no_errors	ZAN	HGNC	ENSG00000146839				18	0	0	20	8	28.5714
ACHE	0	genome.wustl.edu	37	7	100491627	100491627	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	7	100491627	100491627	C	T	SNP	ACHE	ENST00000302913	human	ensembl	74_37	-1	known	missense	c.227	p.R76H	0.795	pfam_CarbesteraseB	pfam_CarbesteraseB,pfam_AB_hydrolase_3,prints_Cholinesterase	-	no_errors	ACHE	HGNC	ENSG00000087085				50	0	0	63	16	20.2532
MOGAT3	0	genome.wustl.edu	37	7	100841524	100841524	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	7	100841524	100841524	A	T	SNP	MOGAT3	ENST00000440203	human	ensembl	74_37	-1	known	missense	c.616	p.C206S	0.000	pfam_DAGAT	pfam_DAGAT	-	no_errors	MOGAT3	HGNC	ENSG00000106384				79	0	0	114	6	5
CUX1	0	genome.wustl.edu	37	7	101844765	101844765	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	7	101844765	101844765	C	T	SNP	CUX1	ENST00000360264	human	ensembl	74_37	+1	known	nonsense	c.2221	p.Q741*	0.845	NULL	pfam_Hmoeo_CUT,pfam_Homeobox_dom,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,superfamily_LemA-like_dom,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Hmoeo_CUT	-	no_errors	CUX1	HGNC	ENSG00000257923				289	0	0	273	78	22.2222
DNAJC2	0	genome.wustl.edu	37	7	102967090	102967090	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	7	102967090	102967090	T	A	SNP	DNAJC2	ENST00000379263	human	ensembl	74_37	-1	known	missense	c.472	p.N158Y	1.000	pfscan_DnaJ_domain	pfam_SANT/Myb,pfam_DnaJ_domain,superfamily_DnaJ_domain,superfamily_Homeodomain-like,smart_DnaJ_domain,smart_SANT/Myb,pfscan_Myb-like_dom,pfscan_DnaJ_domain	-	no_errors	DNAJC2	HGNC	ENSG00000105821				83	0	0	83	7	7.77778
DUS4L	0	genome.wustl.edu	37	7	107216881	107216881	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	7	107216881	107216881	A	G	SNP	DUS4L	ENST00000265720	human	ensembl	74_37	+1	known	missense	c.550	p.T184A	1.000	pfam_tRNA_hU_synthase,pfam_OxRdtase_FMN_N,pirsf_tRNA_hU_synthase	pfam_tRNA_hU_synthase,pfam_OxRdtase_FMN_N,pirsf_tRNA_hU_synthase	-	no_errors	DUS4L	HGNC	ENSG00000105865				72	0	0	79	10	11.236
BCAP29	0	genome.wustl.edu	37	7	107234461	107234461	+	Silent	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	7	107234461	107234461	C	T	SNP	BCAP29	ENST00000379119	human	ensembl	74_37	+1	known	silent	c.255	p.S85	0.001	pfam_Bap31	pfam_Bap31	-	no_errors	BCAP29	HGNC	ENSG00000075790				150	0	0	164	41	20
TMEM168	0	genome.wustl.edu	37	7	112423777	112423777	+	Silent	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	7	112423777	112423777	C	T	SNP	TMEM168	ENST00000312814	human	ensembl	74_37	-1	known	silent	c.1104	p.A368	0.029	NULL	superfamily_ConA-like_lec_gl_sf	-	no_errors	TMEM168	HGNC	ENSG00000146802				188	0	0	187	46	19.7425
PPP1R3A	0	genome.wustl.edu	37	7	113519686	113519686	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	7	113519686	113519686	T	G	SNP	PPP1R3A	ENST00000284601	human	ensembl	74_37	-1	known	missense	c.1461	p.R487S	0.017	NULL	pfam_CBM_21,pfscan_CBM_21	-	no_errors	PPP1R3A	HGNC	ENSG00000154415				76	0	0	75	16	17.5824
THSD7A	0	genome.wustl.edu	37	7	11514158	11514158	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	7	11514158	11514158	T	G	SNP	THSD7A	ENST00000423059	human	ensembl	74_37	-1	known	missense	c.2055	p.E685D	0.910	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	-	no_errors	THSD7A	HGNC	ENSG00000005108				49	0	0	41	14	25.4545
KCND2	0	genome.wustl.edu	37	7	119915142	119915142	+	Silent	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	7	119915142	119915142	G	A	SNP	KCND2	ENST00000331113	human	ensembl	74_37	+1	known	silent	c.456	p.A152	0.000	prints_K_chnl_volt-dep_Kv4,prints_K_chnl_volt-dep_Kv4.2	pfam_K_chnl_volt-dep_Kv4_C,pfam_T1-type_BTB,pfam_Ion_trans_dom,pfam_Shal-type,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv4,prints_K_chnl_volt-dep_Kv4.2,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv3	-	no_errors	KCND2	HGNC	ENSG00000184408				150	0	0	159	9	5.35714
WNT16	0	genome.wustl.edu	37	7	120979236	120979236	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	7	120979236	120979236	G	A	SNP	WNT16	ENST00000222462	human	ensembl	74_37	+1	known	missense	c.935	p.R312H	1.000	pfam_Wnt,smart_Wnt	pfam_Wnt,smart_Wnt,prints_Wnt16,prints_Wnt	-	no_errors	WNT16	HGNC	ENSG00000002745				90	0	0	99	20	16.8067
GPR37	0	genome.wustl.edu	37	7	124404743	124404743	+	Silent	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	7	124404743	124404743	C	T	SNP	GPR37	ENST00000303921	human	ensembl	74_37	-1	known	silent	c.288	p.P96	0.934	NULL	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPR37_orph,prints_GPCR_Rhodpsn	-	no_errors	GPR37	HGNC	ENSG00000170775				47	0	0	43	18	29.5082
LRRC4	0	genome.wustl.edu	37	7	127669622	127669622	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	7	127669622	127669622	C	T	SNP	LRRC4	ENST00000249363	human	ensembl	74_37	-1	known	missense	c.1072	p.A358T	1.000	pfam_Ig_I-set,pfscan_Ig-like_dom	pfam_Leu-rich_rpt,pfam_Ig_I-set,pfam_Ig_V-set,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	LRRC4	HGNC	ENSG00000128594				46	0	0	60	11	15.493
TNPO3	0	genome.wustl.edu	37	7	128597313	128597313	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	7	128597313	128597313	C	T	SNP	TNPO3	ENST00000393245	human	ensembl	74_37	-1	known	missense	c.2870	p.R957Q	1.000	NULL	pfam_Exportin-1/Importin-b-like,superfamily_ARM-type_fold	-	no_errors	TNPO3	HGNC	ENSG00000064419				85	0	0	90	25	21.7391
PLXNA4	0	genome.wustl.edu	37	7	131859616	131859616	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	7	131859616	131859616	G	A	SNP	PLXNA4	ENST00000321063	human	ensembl	74_37	-1	known	missense	c.3938	p.P1313L	1.000	pfam_Plexin_cytoplasmic_RasGAP_dom	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_Semap_dom,pfam_IPT,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_IPT,pfscan_Semap_dom	-	no_errors	PLXNA4	HGNC	ENSG00000221866				161	0	0	178	38	17.5926
PLXNA4	0	genome.wustl.edu	37	7	131895837	131895837	+	Silent	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	7	131895837	131895837	C	T	SNP	PLXNA4	ENST00000321063	human	ensembl	74_37	-1	known	silent	c.2163	p.T721	0.090	NULL	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_Semap_dom,pfam_IPT,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_IPT,pfscan_Semap_dom	-	no_errors	PLXNA4	HGNC	ENSG00000221866				17	0	0	8	3	27.2727
EXOC4	0	genome.wustl.edu	37	7	133580444	133580444	+	Silent	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	7	133580444	133580444	C	T	SNP	EXOC4	ENST00000253861	human	ensembl	74_37	+1	known	silent	c.1827	p.C609	0.889	NULL	pfam_Sec8_exocyst	-	no_errors	EXOC4	HGNC	ENSG00000131558				175	0	0	176	37	17.3709
AKR1B1	0	genome.wustl.edu	37	7	134132069	134132069	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	7	134132069	134132069	C	T	SNP	AKR1B1	ENST00000285930	human	ensembl	74_37	-1	known	missense	c.806	p.R269H	1.000	pfam_NADP_OxRdtase_dom,superfamily_NADP_OxRdtase_dom	pfam_NADP_OxRdtase_dom,superfamily_NADP_OxRdtase_dom,prints_Aldo/keto_reductase_subgr	-	no_errors	AKR1B1	HGNC	ENSG00000085662				100	0	0	86	17	16.5049
AKR1B1	0	genome.wustl.edu	37	7	134132123	134132123	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	7	134132123	134132123	C	T	SNP	AKR1B1	ENST00000285930	human	ensembl	74_37	-1	known	missense	c.752	p.R251Q	1.000	pfam_NADP_OxRdtase_dom,superfamily_NADP_OxRdtase_dom,prints_Aldo/keto_reductase_subgr	pfam_NADP_OxRdtase_dom,superfamily_NADP_OxRdtase_dom,prints_Aldo/keto_reductase_subgr	-	no_errors	AKR1B1	HGNC	ENSG00000085662				96	0	0	78	17	17.8947
KIAA1549	0	genome.wustl.edu	37	7	138546182	138546182	+	Silent	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	7	138546182	138546182	G	A	SNP	KIAA1549	ENST00000422774	human	ensembl	74_37	-1	known	silent	c.4950	p.A1650	0.029	NULL	NULL	-	no_errors	KIAA1549	HGNC	ENSG00000122778				29	0	0	22	4	15.3846
UBN2	0	genome.wustl.edu	37	7	138936727	138936727	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	7	138936727	138936727	A	G	SNP	UBN2	ENST00000473989	human	ensembl	74_37	+1	known	missense	c.587	p.K196R	1.000	NULL	NULL	-	no_errors	UBN2	HGNC	ENSG00000157741				169	0	0	192	40	17.2414
UBN2	0	genome.wustl.edu	37	7	138944059	138944059	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	7	138944059	138944059	G	A	SNP	UBN2	ENST00000473989	human	ensembl	74_37	+1	known	missense	c.848	p.R283Q	1.000	NULL	NULL	-	no_errors	UBN2	HGNC	ENSG00000157741				146	0	0	135	16	10.596
KLRG2	0	genome.wustl.edu	37	7	139167663	139167663	+	Silent	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	7	139167663	139167663	G	A	SNP	KLRG2	ENST00000340940	human	ensembl	74_37	-1	known	silent	c.726	p.D242	0.000	NULL	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	-	no_errors	KLRG2	HGNC	ENSG00000188883				11	0	0	8	3	27.2727
DENND2A	0	genome.wustl.edu	37	7	140227168	140227168	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	7	140227168	140227168	C	T	SNP	DENND2A	ENST00000275884	human	ensembl	74_37	-1	known	missense	c.2455	p.G819R	1.000	pfam_DENN_dom,smart_DENN_dom,pfscan_DENN_dom	pfam_DENN_dom,pfam_uDENN_dom,pfam_dDENN_dom,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom	-	no_errors	DENND2A	HGNC	ENSG00000146966				16	0	0	10	5	33.3333
KEL	0	genome.wustl.edu	37	7	142641426	142641426	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	7	142641426	142641426	C	T	SNP	KEL	ENST00000355265	human	ensembl	74_37	-1	known	missense	c.1475	p.R492Q	0.010	NULL	pfam_Peptidase_M13_N,pfam_Peptidase_M13_C,prints_Peptidase_M13_C	-	no_errors	KEL	HGNC	ENSG00000197993				140	0	0	118	34	22.3684
FAM131B	0	genome.wustl.edu	37	7	143053849	143053849	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	7	143053849	143053849	C	T	SNP	FAM131B	ENST00000443739	human	ensembl	74_37	-1	known	missense	c.877	p.A293T	0.059	NULL	NULL	-	no_errors	FAM131B	HGNC	ENSG00000159784				225	0	0	231	70	23.2558
OR2A2	0	genome.wustl.edu	37	7	143807240	143807240	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	7	143807240	143807240	G	A	SNP	OR2A2	ENST00000408979	human	ensembl	74_37	+1	known	missense	c.565	p.A189T	0.573	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2A2	HGNC	ENSG00000221989				260	0	0	282	42	12.963
ZNF282	0	genome.wustl.edu	37	7	148909543	148909543	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	7	148909543	148909543	T	A	SNP	ZNF282	ENST00000262085	human	ensembl	74_37	+1	known	missense	c.1046	p.I349N	0.942	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,pfam_DUF3669_Znf,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF282	HGNC	ENSG00000170265				26	0	0	31	11	26.1905
GALNT11	0	genome.wustl.edu	37	7	151810452	151810452	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	7	151810452	151810452	G	A	SNP	GALNT11	ENST00000320311	human	ensembl	74_37	+1	known	missense	c.1202	p.R401Q	0.997	NULL	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	GALNT11	HGNC	ENSG00000178234				132	0	0	143	37	20.5556
INTS1	0	genome.wustl.edu	37	7	1535897	1535897	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	7	1535897	1535897	G	A	SNP	INTS1	ENST00000389470	human	ensembl	74_37	-1	known	missense	c.1990	p.R664C	1.000	NULL	pfam_DUF3677,superfamily_ARM-type_fold	-	no_errors	INTS1	HGNC	ENSG00000164880				65	0	0	59	24	28.9157
INTS1	0	genome.wustl.edu	37	7	1538426	1538426	+	Silent	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	7	1538426	1538426	G	A	SNP	INTS1	ENST00000389470	human	ensembl	74_37	-1	known	silent	c.1584	p.S528	0.001	pfam_DUF3677	pfam_DUF3677,superfamily_ARM-type_fold	-	no_errors	INTS1	HGNC	ENSG00000164880				9	0	0	9	6	40
INTS1	0	genome.wustl.edu	37	7	1539893	1539893	+	Silent	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	7	1539893	1539893	G	A	SNP	INTS1	ENST00000389470	human	ensembl	74_37	-1	known	silent	c.843	p.R281	0.898	NULL	pfam_DUF3677,superfamily_ARM-type_fold	-	no_errors	INTS1	HGNC	ENSG00000164880				10	0	0	9	6	40
LMBR1	0	genome.wustl.edu	37	7	156520652	156520652	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	7	156520652	156520652	T	G	SNP	LMBR1	ENST00000354505	human	ensembl	74_37	-1	known	missense	c.1088	p.D363A	1.000	pfam_LMBR1-like_membr_prot	pfam_LMBR1-like_membr_prot,prints_Lipcalin_1_rcpt	-	no_errors	LMBR1	HGNC	ENSG00000105983				27	0	0	34	7	17.0732
NOM1	0	genome.wustl.edu	37	7	156761819	156761819	+	Silent	SNP	T	T	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	7	156761819	156761819	T	A	SNP	NOM1	ENST00000275820	human	ensembl	74_37	+1	known	silent	c.2337	p.R779	0.979	NULL	pfam_Initiation_fac_eIF4g_MI,pfam_MIF4G-like_typ-3,superfamily_ARM-type_fold,smart_MIF4G-like_typ-3,smart_Initiation_fac_eIF4g_MI	-	no_errors	NOM1	HGNC	ENSG00000146909				131	0	0	131	22	14.3791
PTPRN2	0	genome.wustl.edu	37	7	157985114	157985114	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	7	157985114	157985114	G	A	SNP	PTPRN2	ENST00000404321	human	ensembl	74_37	-1	known	nonsense	c.523	p.R175*	0.217	NULL	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Receptor_IA-2,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRN2	HGNC	ENSG00000155093				82	0	0	90	40	30.7692
ESYT2	0	genome.wustl.edu	37	7	158531742	158531742	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	7	158531742	158531742	T	C	SNP	ESYT2	ENST00000251527	human	ensembl	74_37	-1	known	missense	c.2320	p.K774E	1.000	superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	-	no_errors	ESYT2	HGNC	ENSG00000117868				144	0	0	138	23	14.2857
AHR	0	genome.wustl.edu	37	7	17374530	17374530	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	7	17374530	17374530	T	C	SNP	AHR	ENST00000242057	human	ensembl	74_37	+1	known	missense	c.928	p.Y310H	1.000	pfam_PAS_fold_3,superfamily_PAS,smart_PAS	pfam_PAS_fold_3,pfam_PAS_fold,pfam_bHLH_dom,superfamily_PAS,superfamily_bHLH_dom,smart_bHLH_dom,smart_PAS,smart_PAC,pfscan_PAS,pfscan_bHLH_dom	-	no_errors	AHR	HGNC	ENSG00000106546				153	0	0	168	33	16.4179
MACC1	0	genome.wustl.edu	37	7	20198704	20198704	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	7	20198704	20198704	A	G	SNP	MACC1	ENST00000332878	human	ensembl	74_37	-1	known	missense	c.1280	p.L427P	0.990	NULL	pfam_SH3_2,superfamily_DEATH-like_dom	-	no_errors	MACC1	HGNC	ENSG00000183742				40	0	0	66	9	12
DNAH11	0	genome.wustl.edu	37	7	21818688	21818688	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	7	21818688	21818688	G	A	SNP	DNAH11	ENST00000328843	human	ensembl	74_37	+1	known	missense	c.9470	p.R3157Q	1.000	NULL	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH11	HGNC	ENSG00000105877				47	0	0	56	8	12.5
AMZ1	0	genome.wustl.edu	37	7	2748810	2748810	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	7	2748810	2748810	G	A	SNP	AMZ1	ENST00000312371	human	ensembl	74_37	+1	known	missense	c.703	p.E235K	0.001	NULL	pfam_Pept_M54_archaemetzincn	-	no_errors	AMZ1	HGNC	ENSG00000174945				26	0	0	26	9	25.7143
CARD11	0	genome.wustl.edu	37	7	2979408	2979408	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	7	2979408	2979408	T	G	SNP	CARD11	ENST00000396946	human	ensembl	74_37	-1	known	missense	c.839	p.N280T	1.000	NULL	pfam_CARD,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,superfamily_PDZ,pfscan_CARD	-	no_errors	CARD11	HGNC	ENSG00000198286				197	0	0	183	48	20.7792
GARS	0	genome.wustl.edu	37	7	30671954	30671954	+	Silent	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	7	30671954	30671954	C	T	SNP	GARS	ENST00000389266	human	ensembl	74_37	+1	known	silent	c.1995	p.G665	0.020	pfam_Anticodon-bd,superfamily_Anticodon-bd,prints_tRNA-synt_gly,tigrfam_tRNA-synt_gly	pfam_aa-tRNA-synt_IIb_cons-dom,pfam_Anticodon-bd,pfam_WHEP-TRS,superfamily_Anticodon-bd,superfamily_S15_NS1_RNA-bd,prints_tRNA-synt_gly,pfscan_aa-tRNA-synth_II,pfscan_WHEP-TRS,tigrfam_tRNA-synt_gly	-	no_errors	GARS	HGNC	ENSG00000106105				81	0	0	96	33	25.5814
BBS9	0	genome.wustl.edu	37	7	33545142	33545142	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	7	33545142	33545142	A	C	SNP	BBS9	ENST00000242067	human	ensembl	74_37	+1	known	missense	c.2183	p.K728T	0.731	NULL	NULL	-	no_errors	BBS9	HGNC	ENSG00000122507				215	0	0	231	36	13.4831
EEPD1	0	genome.wustl.edu	37	7	36194770	36194770	+	Silent	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	7	36194770	36194770	C	T	SNP	EEPD1	ENST00000242108	human	ensembl	74_37	+1	known	silent	c.837	p.P279	0.016	pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase	pfam_HhH_motif,pfam_Endo/exonuclease/phosphatase,pfam_GspK,superfamily_Endo/exonuclease/phosphatase,superfamily_RuvA_2-like,smart_Hlx-hairpin-Hlx_DNA-bd_motif,tigrfam_Competence_ComEA_HhH	-	no_errors	EEPD1	HGNC	ENSG00000122547				55	0	0	54	7	11.4754
ELMO1	0	genome.wustl.edu	37	7	37264616	37264616	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	7	37264616	37264616	T	G	SNP	ELMO1	ENST00000310758	human	ensembl	74_37	-1	known	missense	c.569	p.K190T	1.000	pfam_DUF3361,superfamily_ARM-type_fold	pfam_DUF3361,pfam_Engulfment_cell_motility_ELMO,superfamily_ARM-type_fold	-	no_errors	ELMO1	HGNC	ENSG00000155849				65	0	0	39	12	23.5294
AMPH	0	genome.wustl.edu	37	7	38505777	38505777	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	7	38505777	38505777	G	A	SNP	AMPH	ENST00000356264	human	ensembl	74_37	-1	known	missense	c.662	p.A221V	0.994	pfam_BAR_dom,smart_BAR_dom,pfscan_BAR_dom,prints_Amphiphysin_1	pfam_BAR_dom,pfam_SH3_2,superfamily_SH3_domain,smart_BAR_dom,smart_SH3_domain,pfscan_BAR_dom,pfscan_SH3_domain,prints_Amphiphysin,prints_Amphiphysin_1,prints_SH3_domain	-	no_errors	AMPH	HGNC	ENSG00000078053				93	0	0	92	25	21.3675
SDK1	0	genome.wustl.edu	37	7	3991409	3991409	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	7	3991409	3991409	T	A	SNP	SDK1	ENST00000404826	human	ensembl	74_37	+1	known	missense	c.1007	p.I336N	0.814	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	SDK1	HGNC	ENSG00000146555				98	0	0	89	9	9.18367
C7orf10	0	genome.wustl.edu	37	7	40900046	40900046	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	7	40900046	40900046	G	A	SNP	C7orf10	ENST00000309930	human	ensembl	74_37	+1	known	missense	c.1384	p.A462T	0.000	superfamily_CoA-Trfase_III_dom	pfam_CoA-Trfase_fam_III,superfamily_CoA-Trfase_III_dom	-	no_errors	C7orf10	HGNC	ENSG00000175600				116	0	0	110	42	27.6316
GLI3	0	genome.wustl.edu	37	7	42005569	42005569	+	Silent	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	7	42005569	42005569	C	T	SNP	GLI3	ENST00000395925	human	ensembl	74_37	-1	known	silent	c.3102	p.A1034	0.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	GLI3	HGNC	ENSG00000106571				34	0	0	44	17	27.8689
GLI3	0	genome.wustl.edu	37	7	42007444	42007444	+	Silent	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	7	42007444	42007444	C	T	SNP	GLI3	ENST00000395925	human	ensembl	74_37	-1	known	silent	c.2181	p.G727	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	GLI3	HGNC	ENSG00000106571				209	0	0	184	34	15.5963
SDK1	0	genome.wustl.edu	37	7	4213858	4213858	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	7	4213858	4213858	C	A	SNP	SDK1	ENST00000404826	human	ensembl	74_37	+1	known	missense	c.4805	p.P1602Q	0.980	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	SDK1	HGNC	ENSG00000146555				374	0	0	423	90	17.5439
PGAM2	0	genome.wustl.edu	37	7	44105024	44105024	+	Silent	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	7	44105024	44105024	G	A	SNP	PGAM2	ENST00000297283	human	ensembl	74_37	-1	known	silent	c.105	p.T35	0.001	pfam_His_Pase_superF_clade-1,smart_His_Pase_superF_clade-1,tigrfam_Phosphogly_mut1	pfam_His_Pase_superF_clade-1,smart_His_Pase_superF_clade-1,tigrfam_Phosphogly_mut1	-	no_errors	PGAM2	HGNC	ENSG00000164708				64	0	0	75	21	21.875
NPC1L1	0	genome.wustl.edu	37	7	44553055	44553055	+	Silent	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	7	44553055	44553055	C	T	SNP	NPC1L1	ENST00000289547	human	ensembl	74_37	-1	known	silent	c.4071	p.R1357	0.000	NULL	pfam_Patched,pfscan_SSD	-	no_errors	NPC1L1	HGNC	ENSG00000015520				99	0	0	91	20	18.018
OGDH	0	genome.wustl.edu	37	7	44664027	44664027	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	7	44664027	44664027	G	A	SNP	OGDH	ENST00000222673	human	ensembl	74_37	+1	known	missense	c.85	p.A29T	0.993	pirsf_2oxoglutarate_DH_E1	pfam_DH_E1,pfam_Transketolase-like_Pyr-bd,smart_Transketolase-like_Pyr-bd,pirsf_2oxoglutarate_DH_E1,tigrfam_2oxoglutarate_DH_E1	-	no_errors	OGDH	HGNC	ENSG00000105953				223	0	0	236	77	24.6006
RAMP3	0	genome.wustl.edu	37	7	45216981	45216981	+	Silent	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	7	45216981	45216981	C	T	SNP	RAMP3	ENST00000242249	human	ensembl	74_37	+1	known	silent	c.132	p.F44	0.014	pfam_RAMP	pfam_RAMP	-	no_errors	RAMP3	HGNC	ENSG00000122679				79	0	0	72	19	20.8791
TNS3	0	genome.wustl.edu	37	7	47385797	47385797	+	Silent	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	7	47385797	47385797	C	T	SNP	TNS3	ENST00000311160	human	ensembl	74_37	-1	known	silent	c.2439	p.A813	0.000	NULL	pfam_PTB,pfam_Tensin_phosphatase_C2-dom,pfam_SH2,superfamily_C2_dom,smart_Tyr_Pase_cat,smart_SH2,smart_PTB/PI_dom,pfscan_SH2,pfscan_Tyr/Dual-sp_Pase,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	TNS3	HGNC	ENSG00000136205				66	0	0	88	17	16.1905
ABCA13	0	genome.wustl.edu	37	7	48682920	48682920	+	Silent	SNP	T	T	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	7	48682920	48682920	T	C	SNP	ABCA13	ENST00000435803	human	ensembl	74_37	+1	known	silent	c.14874	p.C4958	0.000	NULL	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA13	HGNC	ENSG00000179869				272	0	0	260	58	18.239
COBL	0	genome.wustl.edu	37	7	51096403	51096403	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	7	51096403	51096403	G	A	SNP	COBL	ENST00000395542	human	ensembl	74_37	-1	known	missense	c.2636	p.P879L	0.000	NULL	pfam_Cordon-bleu_ubiquitin_domain,pfam_WH2_dom,smart_WH2_dom,pfscan_WH2_dom	-	no_errors	COBL	HGNC	ENSG00000106078				79	0	0	91	14	13.3333
FSCN1	0	genome.wustl.edu	37	7	5632671	5632671	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	7	5632671	5632671	C	T	SNP	FSCN1	ENST00000382361	human	ensembl	74_37	+1	known	missense	c.104	p.A35V	1.000	pfam_Fascin-domain,superfamily_Actin_cross-linking	pfam_Fascin-domain,superfamily_Actin_cross-linking	-	no_errors	FSCN1	HGNC	ENSG00000075618				14	0	0	16	5	23.8095
USP42	0	genome.wustl.edu	37	7	6189801	6189801	+	Silent	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	7	6189801	6189801	C	T	SNP	USP42	ENST00000306177	human	ensembl	74_37	+1	known	silent	c.1974	p.N658	0.853	NULL	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	-	no_errors	USP42	HGNC	ENSG00000106346				40	0	0	57	12	17.3913
ZNF138	0	genome.wustl.edu	37	7	64275419	64275419	+	Silent	SNP	T	T	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	7	64275419	64275419	T	C	SNP	ZNF138	ENST00000437743	human	ensembl	74_37	+1	putative	silent	c.109	p.L37	0.367	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Krueppel-associated_box,pfam_Znf_C2H2,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF138	HGNC	ENSG00000197008				115	0	0	136	45	24.8619
ZNF12	0	genome.wustl.edu	37	7	6730758	6730758	+	Silent	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	7	6730758	6730758	G	A	SNP	ZNF12	ENST00000405858	human	ensembl	74_37	-1	known	silent	c.1815	p.Y605	0.367	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF12	HGNC	ENSG00000164631				69	0	0	64	4	5.88235
AUTS2	0	genome.wustl.edu	37	7	69064858	69064858	+	Silent	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	7	69064858	69064858	G	A	SNP	AUTS2	ENST00000342771	human	ensembl	74_37	+1	known	silent	c.219	p.P73	0.992	NULL	prints_AUTS2	-	no_errors	AUTS2	HGNC	ENSG00000158321				48	0	0	31	11	26.1905
AUTS2	0	genome.wustl.edu	37	7	70254984	70254984	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	7	70254984	70254984	G	A	SNP	AUTS2	ENST00000342771	human	ensembl	74_37	+1	known	missense	c.2782	p.A928T	0.002	NULL	prints_AUTS2	-	no_errors	AUTS2	HGNC	ENSG00000158321				20	0	0	21	4	16
NSUN5	0	genome.wustl.edu	37	7	72722714	72722714	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	7	72722714	72722714	A	G	SNP	NSUN5	ENST00000438747	human	ensembl	74_37	-1	known	missense	c.74	p.V25A	1.000	NULL	pfam_Fmu/NOL1/Nop2p,prints_RCMT	-	no_errors	NSUN5	HGNC	ENSG00000130305				127	0	0	106	21	16.5354
LIMK1	0	genome.wustl.edu	37	7	73535232	73535232	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	7	73535232	73535232	G	A	SNP	LIMK1	ENST00000336180	human	ensembl	74_37	+1	known	missense	c.1634	p.R545Q	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Znf_LIM,pfam_PDZ,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,superfamily_PDZ,smart_Znf_LIM,smart_PDZ,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Znf_LIM,pfscan_PDZ,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	LIMK1	HGNC	ENSG00000106683				159	0	0	172	58	25.2174
GTF2IRD1	0	genome.wustl.edu	37	7	73954296	73954296	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	7	73954296	73954296	C	T	SNP	GTF2IRD1	ENST00000265755	human	ensembl	74_37	+1	known	missense	c.1616	p.T539I	0.282	pirsf_TF_II-I	pfam_GTF2I,superfamily_GTF2I,pirsf_TF_II-I,pfscan_GTF2I	-	no_errors	GTF2IRD1	HGNC	ENSG00000006704				65	0	0	74	22	22.9167
HIP1	0	genome.wustl.edu	37	7	75186991	75186991	+	Silent	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	7	75186991	75186991	C	T	SNP	HIP1	ENST00000336926	human	ensembl	74_37	-1	known	silent	c.1548	p.S516	0.978	NULL	pfam_ANTH_dom,pfam_ILWEQ_dom,pfam_Epsin_dom_N,superfamily_ENTH_VHS,superfamily_ARM-type_fold,superfamily_Prefoldin,smart_Epsin-like_N,smart_ILWEQ_dom,pfscan_Epsin-like_N,pfscan_ILWEQ_dom	-	no_errors	HIP1	HGNC	ENSG00000127946				294	0	0	343	77	18.3333
SRCRB4D	0	genome.wustl.edu	37	7	76019658	76019658	+	Silent	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	7	76019658	76019658	G	A	SNP	SRCRB4D	ENST00000275560	human	ensembl	74_37	-1	known	silent	c.1446	p.C482	0.184	pfam_SRCR,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_SRCR	pfam_SRCR,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_SRCR,prints_SRCR	-	no_errors	SRCRB4D	HGNC	ENSG00000146700				57	0	0	46	8	14.8148
CCDC146	0	genome.wustl.edu	37	7	76958725	76958725	+	RNA	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	7	76958725	76958725	G	A	SNP	CCDC146	ENST00000488998	human	ensembl	74_37	+1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	CCDC146	HGNC	ENSG00000135205				91	0	0	86	27	23.8938
MAGI2	0	genome.wustl.edu	37	7	77885613	77885613	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	7	77885613	77885613	G	A	SNP	MAGI2	ENST00000354212	human	ensembl	74_37	-1	known	missense	c.1694	p.P565L	1.000	NULL	pfam_PDZ,pfam_WW_dom,pfam_GK/Ca_channel_bsu,superfamily_PDZ,superfamily_P-loop_NTPase,superfamily_WW_dom,smart_PDZ,smart_GK/Ca_channel_bsu,smart_WW_dom,pfscan_PDZ,pfscan_WW_dom,pfscan_Guanylate_kin-like	-	no_errors	MAGI2	HGNC	ENSG00000187391				75	0	0	57	12	17.3913
HGF	0	genome.wustl.edu	37	7	81340814	81340814	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	7	81340814	81340814	G	A	SNP	HGF	ENST00000222390	human	ensembl	74_37	-1	known	missense	c.1427	p.T476I	1.000	NULL	pfam_Kringle,pfam_Peptidase_S1,pfam_PAN-1_domain,superfamily_Trypsin-like_Pept_dom,superfamily_Kringle-like,smart_Pan_app,smart_Kringle,smart_Peptidase_S1,pfscan_Pan_app,pfscan_Kringle,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	HGF	HGNC	ENSG00000019991				10	0	0	5	5	50
HGF	0	genome.wustl.edu	37	7	81372669	81372669	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	7	81372669	81372669	C	T	SNP	HGF	ENST00000222390	human	ensembl	74_37	-1	known	missense	c.865	p.A289T	1.000	superfamily_Kringle-like,smart_Kringle	pfam_Kringle,pfam_Peptidase_S1,pfam_PAN-1_domain,superfamily_Trypsin-like_Pept_dom,superfamily_Kringle-like,smart_Pan_app,smart_Kringle,smart_Peptidase_S1,pfscan_Pan_app,pfscan_Kringle,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	HGF	HGNC	ENSG00000019991				70	0	0	81	15	15.625
PCLO	0	genome.wustl.edu	37	7	82581873	82581873	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	7	82581873	82581873	G	A	SNP	PCLO	ENST00000333891	human	ensembl	74_37	-1	known	missense	c.8396	p.T2799I	0.998	NULL	pfam_Znf_piccolo,pfam_C2_dom,pfam_PDZ,superfamily_C2_dom,superfamily_PDZ,superfamily_Znf_FYVE_PHD,smart_PDZ,smart_C2_dom,pfscan_C2_dom,pfscan_PDZ	-	no_errors	PCLO	HGNC	ENSG00000186472				87	0	0	99	20	16.8067
PCLO	0	genome.wustl.edu	37	7	82763950	82763950	+	Silent	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	7	82763950	82763950	C	T	SNP	PCLO	ENST00000333891	human	ensembl	74_37	-1	known	silent	c.2916	p.Q972	0.684	NULL	pfam_Znf_piccolo,pfam_C2_dom,pfam_PDZ,superfamily_C2_dom,superfamily_PDZ,superfamily_Znf_FYVE_PHD,smart_PDZ,smart_C2_dom,pfscan_C2_dom,pfscan_PDZ	-	no_errors	PCLO	HGNC	ENSG00000186472				46	0	0	45	11	19.6429
PCLO	0	genome.wustl.edu	37	7	82764620	82764620	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	7	82764620	82764620	A	C	SNP	PCLO	ENST00000333891	human	ensembl	74_37	-1	known	missense	c.2246	p.V749G	0.000	NULL	pfam_Znf_piccolo,pfam_C2_dom,pfam_PDZ,superfamily_C2_dom,superfamily_PDZ,superfamily_Znf_FYVE_PHD,smart_PDZ,smart_C2_dom,pfscan_C2_dom,pfscan_PDZ	-	no_errors	PCLO	HGNC	ENSG00000186472				91	0	0	103	17	14.1667
GRM3	0	genome.wustl.edu	37	7	86468223	86468223	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	7	86468223	86468223	C	T	SNP	GRM3	ENST00000361669	human	ensembl	74_37	+1	known	nonsense	c.1393	p.R465*	0.677	pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_GPCR_3_9-Cys_dom,superfamily_Peripla_BP_I,pfscan_GPCR_3_C,prints_GPCR_3,prints_GPCR_3_mtglu_rcpt_3,prints_GPCR_3_mtglu_rcpt,prints_GPCR_3_mtglu_rcpt_2,prints_GPCR_3_GABA_rcpt_B	-	no_errors	GRM3	HGNC	ENSG00000198822				32	0	0	33	8	19.5122
ZNF804B	0	genome.wustl.edu	37	7	88956722	88956722	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	7	88956722	88956722	A	C	SNP	ZNF804B	ENST00000333190	human	ensembl	74_37	+1	known	missense	c.314	p.E105A	1.000	NULL	pfam_Znf_C2H2_jaz	-	no_errors	ZNF804B	HGNC	ENSG00000182348				98	0	0	131	39	22.9412
AKAP9	0	genome.wustl.edu	37	7	91603056	91603056	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	7	91603056	91603056	C	T	SNP	AKAP9	ENST00000359028	human	ensembl	74_37	+1	known	missense	c.116	p.S39L	0.686	NULL	pfam_PACT_domain,superfamily_Prefoldin,superfamily_YbaB	-	no_errors	AKAP9	HGNC	ENSG00000127914				39	0	0	51	12	19.0476
CALCR	0	genome.wustl.edu	37	7	93055810	93055810	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	7	93055810	93055810	G	A	SNP	CALCR	ENST00000359558	human	ensembl	74_37	-1	known	missense	c.1385	p.A462V	0.000	NULL	pfam_GPCR_2_secretin-like,pfam_GPCR_2_extracellular_dom,smart_GPCR_2_extracellular_dom,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GCPR_2_calcitonin_rcpt_fam,prints_GPCR_2_secretin-like,prints_GPCR_2_calcitonin_rcpt	-	no_errors	CALCR	HGNC	ENSG00000004948				193	0	0	140	38	21.3483
PON3	0	genome.wustl.edu	37	7	94991695	94991695	+	Silent	SNP	A	A	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	7	94991695	94991695	A	G	SNP	PON3	ENST00000265627	human	ensembl	74_37	-1	known	silent	c.885	p.P295	0.959	pfam_SGL,prints_Paraoxonase2	pfam_Arylesterase,pfam_SGL,pfam_Strictosidine_synth_cons-reg,prints_Arylesterase,prints_Paraoxonase2	-	no_errors	PON3	HGNC	ENSG00000105852				68	0	0	66	9	12
SMURF1	0	genome.wustl.edu	37	7	98649829	98649829	+	Silent	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	7	98649829	98649829	G	A	SNP	SMURF1	ENST00000361125	human	ensembl	74_37	-1	known	silent	c.720	p.Y240	0.162	pfam_WW_dom,superfamily_WW_dom,smart_WW_dom,pfscan_WW_dom	pfam_HECT,pfam_WW_dom,pfam_C2_dom,superfamily_HECT,superfamily_C2_dom,superfamily_WW_dom,smart_C2_dom,smart_WW_dom,smart_HECT,pfscan_HECT,pfscan_C2_dom,pfscan_WW_dom	-	no_errors	SMURF1	HGNC	ENSG00000198742				180	0	0	174	43	19.8157
ZNF789	0	genome.wustl.edu	37	7	99079810	99079810	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	7	99079810	99079810	T	C	SNP	ZNF789	ENST00000379724	human	ensembl	74_37	+1	known	missense	c.176	p.I59T	0.389	smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	-	no_errors	ZNF789	HGNC	ENSG00000198556				107	0	0	100	23	18.6992
ZKSCAN1	0	genome.wustl.edu	37	7	99621904	99621904	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	7	99621904	99621904	G	A	SNP	ZKSCAN1	ENST00000324306	human	ensembl	74_37	+1	known	missense	c.554	p.R185Q	1.000	NULL	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZKSCAN1	HGNC	ENSG00000106261				61	0	0	54	13	19.403
TAF6	0	genome.wustl.edu	37	7	99710462	99710462	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	7	99710462	99710462	A	G	SNP	TAF6	ENST00000344095	human	ensembl	74_37	-1	known	missense	c.533	p.L178P	1.000	NULL	pfam_DUF1546,pfam_TAF_TATA-bd,superfamily_Histone-fold,superfamily_ARM-type_fold,smart_TAF_TATA-bd	-	no_errors	TAF6	HGNC	ENSG00000106290				343	0	0	345	77	18.2464
VPS13B	0	genome.wustl.edu	37	8	100147927	100147927	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	8	100147927	100147927	G	A	SNP	VPS13B	ENST00000358544	human	ensembl	74_37	+1	known	missense	c.1529	p.R510H	1.000	NULL	pfam_Autophagy-rel_C	-	no_errors	VPS13B	HGNC	ENSG00000132549				51	0	0	69	18	20.6897
VPS13B	0	genome.wustl.edu	37	8	100779005	100779005	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	8	100779005	100779005	C	T	SNP	VPS13B	ENST00000358544	human	ensembl	74_37	+1	known	missense	c.7129	p.P2377S	1.000	NULL	pfam_Autophagy-rel_C	-	no_errors	VPS13B	HGNC	ENSG00000132549				72	0	0	65	15	18.75
PRSS55	0	genome.wustl.edu	37	8	10383222	10383222	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	8	10383222	10383222	C	T	SNP	PRSS55	ENST00000328655	human	ensembl	74_37	+1	known	missense	c.127	p.P43S	0.000	NULL	pfam_Peptidase_S1,pfam_Peptidase_S1A_nudel,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	PRSS55	HGNC	ENSG00000184647				24	0	0	25	9	26.4706
RIMS2	0	genome.wustl.edu	37	8	104922742	104922742	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	8	104922742	104922742	T	G	SNP	RIMS2	ENST00000262231	human	ensembl	74_37	+1	known	missense	c.1242	p.H414Q	1.000	superfamily_PDZ	pfam_C2_dom,pfam_PDZ,superfamily_C2_dom,superfamily_PDZ,smart_PDZ,smart_C2_dom,pfscan_C2_dom,pfscan_PDZ	-	no_errors	RIMS2	HGNC	ENSG00000176406				50	0	0	53	7	11.6667
TRHR	0	genome.wustl.edu	37	8	110099786	110099786	+	Silent	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	8	110099786	110099786	G	A	SNP	TRHR	ENST00000311762	human	ensembl	74_37	+1	known	silent	c.45	p.Q15	1.000	prints_TRH_rcpt_1	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_TRH_rcpt_1,prints_GPCR_Rhodpsn	-	no_errors	TRHR	HGNC	ENSG00000174417				83	0	0	73	27	27
SYBU	0	genome.wustl.edu	37	8	110587852	110587852	+	Silent	SNP	A	A	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	8	110587852	110587852	A	G	SNP	SYBU	ENST00000276646	human	ensembl	74_37	-1	known	silent	c.1275	p.A425	0.459	NULL	NULL	-	no_errors	SYBU	HGNC	ENSG00000147642				114	1	0.869565	126	22	14.8649
CSMD3	0	genome.wustl.edu	37	8	113694851	113694851	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	8	113694851	113694851	C	T	SNP	CSMD3	ENST00000297405	human	ensembl	74_37	-1	known	missense	c.2497	p.E833K	1.000	superfamily_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_CUB_dom,pfam_Sushi_SCR_CCP,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_CUB_dom,smart_Sushi_SCR_CCP,pfscan_CUB_dom,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD3	HGNC	ENSG00000164796				140	0	0	122	14	10.2941
TRPS1	0	genome.wustl.edu	37	8	116616692	116616692	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	8	116616692	116616692	T	G	SNP	TRPS1	ENST00000395715	human	ensembl	74_37	-1	known	missense	c.1504	p.S502R	1.000	NULL	pfam_Znf_GATA,smart_Znf_C2H2-like,smart_Znf_GATA,pfscan_Znf_C2H2,pfscan_Znf_GATA,prints_Znf_GATA	-	no_errors	TRPS1	HGNC	ENSG00000104447				132	0	0	140	41	22.6519
TRPS1	0	genome.wustl.edu	37	8	116616856	116616856	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	8	116616856	116616856	T	C	SNP	TRPS1	ENST00000395715	human	ensembl	74_37	-1	known	missense	c.1340	p.Y447C	1.000	smart_Znf_C2H2-like	pfam_Znf_GATA,smart_Znf_C2H2-like,smart_Znf_GATA,pfscan_Znf_C2H2,pfscan_Znf_GATA,prints_Znf_GATA	-	no_errors	TRPS1	HGNC	ENSG00000104447				40	0	0	52	10	16.129
RAD21	0	genome.wustl.edu	37	8	117859879	117859879	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	8	117859879	117859879	G	A	SNP	RAD21	ENST00000297338	human	ensembl	74_37	-1	known	nonsense	c.1756	p.R586*	1.000	pfam_Rad21/Rec8_C_eu,pfam_ScpA	pfam_Rad21_Rec8_N,pfam_Rad21/Rec8_C_eu,pfam_ScpA	-	no_errors	RAD21	HGNC	ENSG00000164754				79	0	0	65	15	18.75
NOV	0	genome.wustl.edu	37	8	120430323	120430323	+	Silent	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	8	120430323	120430323	C	T	SNP	NOV	ENST00000259526	human	ensembl	74_37	+1	known	silent	c.336	p.F112	0.799	pfam_VWF_C,smart_VWF_C,pirsf_IGFBP_CNN,pfscan_VWF_C	pfam_IGFBP-like,pfam_Cys_knot,pfam_VWF_C,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_IGFBP-like,smart_VWF_C,smart_Thrombospondin_1_rpt,smart_Cys_knot_C,pirsf_IGFBP_CNN,pfscan_Cys_knot_C,pfscan_Thrombospondin_1_rpt,pfscan_VWF_C	-	no_errors	NOV	HGNC	ENSG00000136999				101	0	0	113	39	25.6579
COL14A1	0	genome.wustl.edu	37	8	121259946	121259946	+	Silent	SNP	C	C	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	8	121259946	121259946	C	A	SNP	COL14A1	ENST00000297848	human	ensembl	74_37	+1	known	silent	c.2574	p.G858	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_VWF_A,pfam_Fibronectin_type3,pfam_Collagen,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_VWF_A,smart_Laminin_G,pfscan_Fibronectin_type3,pfscan_VWF_A	-	no_errors	COL14A1	HGNC	ENSG00000187955				124	0	0	116	20	14.7059
DLC1	0	genome.wustl.edu	37	8	12948849	12948849	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	8	12948849	12948849	G	C	SNP	DLC1	ENST00000276297	human	ensembl	74_37	-1	known	missense	c.3833	p.A1278G	0.996	superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	pfam_START_lipid-bd_dom,pfam_RhoGAP_dom,pfam_SAM_2,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,smart_START_lipid-bd_dom,pfscan_START_lipid-bd_dom,pfscan_RhoGAP_dom	-	no_errors	DLC1	HGNC	ENSG00000164741				157	0	0	132	14	9.58904
TG	0	genome.wustl.edu	37	8	133881992	133881992	+	Silent	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	8	133881992	133881992	C	T	SNP	TG	ENST00000220616	human	ensembl	74_37	+1	known	silent	c.195	p.N65	0.000	pfam_Thyroglobulin_1,superfamily_Thyroglobulin_1,smart_Thyroglobulin_1,pirsf_Thyroglobulin,pfscan_Thyroglobulin_1	pfam_Thyroglobulin_1,pfam_CarbesteraseB,pfam_Tyr-kin_ephrin_A/B_rcpt-like,superfamily_Thyroglobulin_1,smart_Thyroglobulin_1,pirsf_Thyroglobulin,pfscan_Thyroglobulin_1	-	no_errors	TG	HGNC	ENSG00000042832				79	0	0	73	20	21.5054
WISP1	0	genome.wustl.edu	37	8	134225358	134225358	+	Silent	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	8	134225358	134225358	C	T	SNP	WISP1	ENST00000250160	human	ensembl	74_37	+1	known	silent	c.321	p.R107	1.000	smart_IGFBP-like,pirsf_IGFBP_CNN	pfam_IGFBP-like,pfam_VWF_C,pfam_Cys_knot,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_IGFBP-like,smart_VWF_C,smart_Thrombospondin_1_rpt,smart_Cys_knot_C,pirsf_IGFBP_CNN,pfscan_Cys_knot_C,pfscan_Thrombospondin_1_rpt,pfscan_VWF_C	-	no_errors	WISP1	HGNC	ENSG00000104415				95	0	0	79	20	20.202
COL22A1	0	genome.wustl.edu	37	8	139845316	139845316	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	8	139845316	139845316	G	A	SNP	COL22A1	ENST00000303045	human	ensembl	74_37	-1	known	missense	c.811	p.R271W	1.000	superfamily_ConA-like_lec_gl_sf,smart_Laminin_G	pfam_Collagen,pfam_VWF_A,superfamily_ConA-like_lec_gl_sf,smart_VWF_A,smart_Laminin_G,pfscan_VWF_A	-	no_errors	COL22A1	HGNC	ENSG00000169436				70	0	0	85	15	15
LYPD2	0	genome.wustl.edu	37	8	143833859	143833859	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	8	143833859	143833859	G	A	SNP	LYPD2	ENST00000359228	human	ensembl	74_37	-1	known	missense	c.11	p.T4M	0.000	NULL	pfam_LY6_UPAR,smart_LY6_UPA_recep-like	-	no_errors	LYPD2	HGNC	ENSG00000197353				110	0	0	101	19	15.8333
TOP1MT	0	genome.wustl.edu	37	8	144403476	144403476	+	Silent	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	8	144403476	144403476	G	A	SNP	TOP1MT	ENST00000329245	human	ensembl	74_37	-1	known	silent	c.1041	p.H347	0.997	pfam_TopoI_cat_euk,superfamily_DNA_brk_join_enz,smart_TopoI_euk,prints_TopoI	pfam_TopoI_DNA-bd_euk,pfam_TopoI_cat_euk,superfamily_TopoI_DNA-bd_euk,superfamily_DNA_brk_join_enz,smart_TopoI_euk,prints_TopoI	-	no_errors	TOP1MT	HGNC	ENSG00000184428				90	0	0	98	31	24.031
RHPN1	0	genome.wustl.edu	37	8	144463474	144463474	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	8	144463474	144463474	G	A	SNP	RHPN1	ENST00000289013	human	ensembl	74_37	+1	known	missense	c.1448	p.R483H	0.531	pfam_BRO1_dom	pfam_BRO1_dom,pfam_HR1_rho-bd,pfam_PDZ,superfamily_PDZ,superfamily_HR1_rho-bd,smart_HR1_rho-bd,smart_PDZ,pfscan_BRO1_dom,pfscan_PDZ	-	no_errors	RHPN1	HGNC	ENSG00000158106				38	0	0	30	8	21.0526
ZNF623	0	genome.wustl.edu	37	8	144732671	144732671	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	8	144732671	144732671	C	T	SNP	ZNF623	ENST00000501748	human	ensembl	74_37	+1	known	missense	c.629	p.A210V	0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF623	HGNC	ENSG00000183309				128	0	0	157	38	19.4872
MAPK15	0	genome.wustl.edu	37	8	144803497	144803497	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	8	144803497	144803497	G	A	SNP	MAPK15	ENST00000338033	human	ensembl	74_37	+1	known	missense	c.1120	p.D374N	0.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	MAPK15	HGNC	ENSG00000181085				130	0	0	162	39	19.403
FAM83H	0	genome.wustl.edu	37	8	144812314	144812314	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	8	144812314	144812314	C	T	SNP	FAM83H	ENST00000388913	human	ensembl	74_37	-1	known	missense	c.439	p.A147T	1.000	pfam_DUF1669	pfam_DUF1669	-	no_errors	FAM83H	HGNC	ENSG00000180921				22	0	0	15	8	34.7826
EPPK1	0	genome.wustl.edu	37	8	144940592	144940592	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	8	144940592	144940592	C	T	SNP	EPPK1	ENST00000525985	human	ensembl	74_37	-1	known	missense	c.6830	p.R2277H	0.897	pfam_Plectin_repeat,smart_Plectin_repeat	pfam_Plectin_repeat,smart_Plectin_repeat	-	no_errors	EPPK1	HGNC	ENSG00000227184				43	0	0	34	3	8.10811
PARP10	0	genome.wustl.edu	37	8	145057410	145057410	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	8	145057410	145057410	G	A	SNP	PARP10	ENST00000313028	human	ensembl	74_37	-1	known	missense	c.2347	p.R783C	0.813	NULL	pfam_Poly(ADP-ribose)pol_cat_dom,pfscan_Poly(ADP-ribose)pol_cat_dom	-	no_errors	PARP10	HGNC	ENSG00000178685				32	0	0	41	9	18
OPLAH	0	genome.wustl.edu	37	8	145111995	145111995	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	8	145111995	145111995	C	A	SNP	OPLAH	ENST00000426825	human	ensembl	74_37	-1	known	missense	c.1562	p.G521V	1.000	pfam_Hydantoinase_A	pfam_Hydantoinase_B,pfam_Hydantoinase_A,pfam_Hydant_A_N	-	no_errors	OPLAH	HGNC	ENSG00000178814				14	0	0	8	4	33.3333
HSF1	0	genome.wustl.edu	37	8	145535505	145535505	+	Silent	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	8	145535505	145535505	C	T	SNP	HSF1	ENST00000528838	human	ensembl	74_37	+1	known	silent	c.843	p.G281	0.166	pfam_Vert_HSTF_C	pfam_Vert_HSTF_C,pfam_HSF_DNA-bd,smart_HSF_DNA-bd,prints_HSF_DNA-bd	-	no_errors	HSF1	HGNC	ENSG00000185122				66	0	0	67	21	23.8636
FBXL6	0	genome.wustl.edu	37	8	145579704	145579704	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	8	145579704	145579704	T	C	SNP	FBXL6	ENST00000331890	human	ensembl	74_37	-1	known	missense	c.1396	p.S466G	0.000	NULL	superfamily_F-box_dom,smart_Leu-rich_rpt_Cys-con_subtyp	-	no_errors	FBXL6	HGNC	ENSG00000182325				159	0	0	159	17	9.65909
FBXL6	0	genome.wustl.edu	37	8	145580161	145580161	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	8	145580161	145580161	G	A	SNP	FBXL6	ENST00000331890	human	ensembl	74_37	-1	known	missense	c.1024	p.P342S	1.000	NULL	superfamily_F-box_dom,smart_Leu-rich_rpt_Cys-con_subtyp	-	no_errors	FBXL6	HGNC	ENSG00000182325				60	0	0	62	16	20.5128
ADCK5	0	genome.wustl.edu	37	8	145608327	145608327	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	8	145608327	145608327	G	A	SNP	ADCK5	ENST00000533715	human	ensembl	74_37	+1	known	missense	c.260	p.R87Q	0.000	NULL	NULL	-	no_errors	ADCK5	HGNC	ENSG00000173137				13	0	0	8	3	27.2727
CPSF1	0	genome.wustl.edu	37	8	145623932	145623932	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	8	145623932	145623932	G	A	SNP	CPSF1	ENST00000349769	human	ensembl	74_37	-1	known	missense	c.1735	p.R579W	1.000	NULL	pfam_Cleavage/polyA-sp_fac_asu_C	-	no_errors	CPSF1	HGNC	ENSG00000071894				187	0	0	178	58	24.5763
FGF20	0	genome.wustl.edu	37	8	16850819	16850819	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	8	16850819	16850819	A	C	SNP	FGF20	ENST00000180166	human	ensembl	74_37	-1	known	missense	c.398	p.L133R	1.000	pfam_Fibroblast_GF_fam,superfamily_Cytokine_IL1-like,smart_Fibroblast_GF_fam	pfam_Fibroblast_GF_fam,superfamily_Cytokine_IL1-like,smart_Fibroblast_GF_fam,prints_Fibroblast_GF_fam,prints_IL-1_fam/FGF_fam	-	no_errors	FGF20	HGNC	ENSG00000078579				257	0	0	260	42	13.9073
MTMR7	0	genome.wustl.edu	37	8	17157580	17157580	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	8	17157580	17157580	G	A	SNP	MTMR7	ENST00000180173	human	ensembl	74_37	-1	known	missense	c.1774	p.R592W	1.000	NULL	pfam_Myotubularin-like_Pase_dom,smart_Tyr_Pase_cat,pfscan_Tyr/Dual-sp_Pase	-	no_errors	MTMR7	HGNC	ENSG00000003987				180	1	0.552486	197	61	23.6434
LZTS1	0	genome.wustl.edu	37	8	20112401	20112401	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	8	20112401	20112401	A	T	SNP	LZTS1	ENST00000265801	human	ensembl	74_37	-1	known	missense	c.292	p.F98I	0.998	NULL	NULL	-	no_errors	LZTS1	HGNC	ENSG00000061337				74	0	0	70	11	13.5802
NEFM	0	genome.wustl.edu	37	8	24773231	24773231	+	Silent	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	8	24773231	24773231	C	T	SNP	NEFM	ENST00000221166	human	ensembl	74_37	+1	known	silent	c.1194	p.I398	0.999	pfam_IF	pfam_IF,pfam_Intermed_filament_DNA-bd,superfamily_Prefoldin,prints_Keratin_I	-	no_errors	NEFM	HGNC	ENSG00000104722				69	0	0	72	19	20.8791
DOCK5	0	genome.wustl.edu	37	8	25158099	25158099	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	8	25158099	25158099	T	C	SNP	DOCK5	ENST00000276440	human	ensembl	74_37	+1	known	missense	c.772	p.Y258H	1.000	NULL	pfam_DOCK_C,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,superfamily_ARM-type_fold,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	DOCK5	HGNC	ENSG00000147459				22	0	0	31	8	20.5128
EBF2	0	genome.wustl.edu	37	8	25902252	25902252	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	8	25902252	25902252	C	T	SNP	EBF2	ENST00000520164	human	ensembl	74_37	-1	known	missense	c.124	p.A42T	1.000	NULL	pfam_IPT,superfamily_Ig_E-set,smart_IPT	-	no_errors	EBF2	HGNC	ENSG00000221818				144	1	0.689655	149	33	18.1319
ESCO2	0	genome.wustl.edu	37	8	27657160	27657160	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	8	27657160	27657160	G	T	SNP	ESCO2	ENST00000305188	human	ensembl	74_37	+1	known	missense	c.1600	p.G534W	1.000	NULL	NULL	-	no_errors	ESCO2	HGNC	ENSG00000171320				240	2	0.826446	198	64	24.4275
ELP3	0	genome.wustl.edu	37	8	28013468	28013468	+	Silent	SNP	A	A	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	8	28013468	28013468	A	G	SNP	ELP3	ENST00000256398	human	ensembl	74_37	+1	known	silent	c.1110	p.P370	0.985	superfamily_Acyl_CoA_acyltransferase,pirsf_Hist_AcTrfase_ELP3,tigrfam_Hist_AcTrfase_ELP3	pfam_rSAM,pfam_GNAT_dom,superfamily_Acyl_CoA_acyltransferase,smart_Elp3/MiaB/NifB,pirsf_Hist_AcTrfase_ELP3,pfscan_GNAT_dom,tigrfam_Hist_AcTrfase_ELP3	-	no_errors	ELP3	HGNC	ENSG00000134014				42	0	0	42	6	12.5
CSMD1	0	genome.wustl.edu	37	8	2808696	2808696	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	8	2808696	2808696	T	C	SNP	CSMD1	ENST00000520002	human	ensembl	74_37	-1	known	missense	c.10144	p.T3382A	0.734	NULL	pfam_CUB_dom,pfam_Sushi_SCR_CCP,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_CUB_dom,smart_Sushi_SCR_CCP,pfscan_CUB_dom,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD1	HGNC	ENSG00000183117				33	0	0	42	4	8.69565
EXTL3	0	genome.wustl.edu	37	8	28575417	28575417	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	8	28575417	28575417	T	C	SNP	EXTL3	ENST00000220562	human	ensembl	74_37	+1	known	missense	c.1841	p.F614S	1.000	NULL	pfam_HexNAc_Trfase_a,pfam_Exostosin	-	no_errors	EXTL3	HGNC	ENSG00000012232				179	0	0	171	45	20.8333
CSMD1	0	genome.wustl.edu	37	8	3200878	3200878	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	8	3200878	3200878	A	G	SNP	CSMD1	ENST00000520002	human	ensembl	74_37	-1	known	missense	c.3572	p.L1191P	1.000	pfam_CUB_dom,superfamily_CUB_dom,smart_CUB_dom,pfscan_CUB_dom	pfam_CUB_dom,pfam_Sushi_SCR_CCP,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_CUB_dom,smart_Sushi_SCR_CCP,pfscan_CUB_dom,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD1	HGNC	ENSG00000183117				114	0	0	100	17	14.5299
BRF2	0	genome.wustl.edu	37	8	37702451	37702451	+	Silent	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	8	37702451	37702451	G	A	SNP	BRF2	ENST00000220659	human	ensembl	74_37	-1	known	silent	c.817	p.L273	1.000	superfamily_Cyclin-like	pfam_Znf_TFIIB,superfamily_Cyclin-like,pfscan_Znf_TFIIB	-	no_errors	BRF2	HGNC	ENSG00000104221				49	0	0	59	9	13.2353
FGFR1	0	genome.wustl.edu	37	8	38275753	38275753	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	8	38275753	38275753	G	A	SNP	FGFR1	ENST00000425967	human	ensembl	74_37	-1	known	missense	c.1516	p.R506W	0.729	pirsf_FGF_rcpt_fam,superfamily_Kinase-like_dom	pirsf_FGF_rcpt_fam,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	FGFR1	HGNC	ENSG00000077782				202	0	0	186	43	18.7773
GINS4	0	genome.wustl.edu	37	8	41399516	41399516	+	Silent	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	8	41399516	41399516	C	T	SNP	GINS4	ENST00000276533	human	ensembl	74_37	+1	known	silent	c.582	p.Y194	0.747	pirsf_GINS_Sld5	pfam_GINS_complex,pirsf_GINS_Sld5	-	no_errors	GINS4	HGNC	ENSG00000147536				126	0	0	130	37	22.1557
CHRNA6	0	genome.wustl.edu	37	8	42611479	42611479	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	8	42611479	42611479	A	G	SNP	CHRNA6	ENST00000276410	human	ensembl	74_37	-1	known	missense	c.863	p.V288A	1.000	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,tigrfam_Neur_channel	pfam_Neurotrans-gated_channel_TM,pfam_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,prints_Nicotinic_acetylcholine_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	CHRNA6	HGNC	ENSG00000147434				86	0	0	95	24	20.1681
PRKDC	0	genome.wustl.edu	37	8	48846583	48846583	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	8	48846583	48846583	G	T	SNP	PRKDC	ENST00000314191	human	ensembl	74_37	-1	known	missense	c.1565	p.P522H	1.000	superfamily_ARM-type_fold	pfam_NUC194,pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PRKDC	HGNC	ENSG00000253729				122	0	0	102	25	19.685
EFCAB1	0	genome.wustl.edu	37	8	49647703	49647703	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	8	49647703	49647703	C	T	SNP	EFCAB1	ENST00000262103	human	ensembl	74_37	-1	known	missense	c.8	p.R3H	1.000	NULL	pfam_EF_hand_dom,smart_EF_hand_dom,pfscan_EF_hand_dom,prints_Recoverin	-	no_errors	EFCAB1	HGNC	ENSG00000034239				160	1	0.621118	140	43	23.4973
SNTG1	0	genome.wustl.edu	37	8	51449331	51449331	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	8	51449331	51449331	C	T	SNP	SNTG1	ENST00000518864	human	ensembl	74_37	+1	known	missense	c.643	p.R215C	0.980	smart_Pleckstrin_homology	pfam_PDZ,superfamily_PDZ,smart_PDZ,smart_Pleckstrin_homology,pfscan_PDZ,pfscan_Pleckstrin_homology	-	no_errors	SNTG1	HGNC	ENSG00000147481				262	0	0	215	61	22.1014
PXDNL	0	genome.wustl.edu	37	8	52366130	52366130	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	8	52366130	52366130	C	A	SNP	PXDNL	ENST00000356297	human	ensembl	74_37	-1	known	missense	c.1198	p.A400S	0.923	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Haem_peroxidase_animal,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_VWF_C,pfam_Leu-rich_rpt,superfamily_Haem_peroxidase,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,smart_VWF_C,prints_Haem_peroxidase_animal_subgr,pfscan_VWF_C,pfscan_Haem_peroxidase_animal,pfscan_Ig-like_dom	-	no_errors	PXDNL	HGNC	ENSG00000147485				93	0	0	95	22	18.8034
NPBWR1	0	genome.wustl.edu	37	8	53852727	53852727	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	8	53852727	53852727	C	T	SNP	NPBWR1	ENST00000331251	human	ensembl	74_37	+1	known	missense	c.260	p.T87M	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Neuropept_B/W_rcpt,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Neuropept_B/W_rcpt,prints_GPCR_Rhodpsn,prints_NPY_rcpt,prints_Opioid_rcpt	-	no_errors	NPBWR1	HGNC	ENSG00000183729				32	0	0	23	10	30.303
MOS	0	genome.wustl.edu	37	8	57026447	57026447	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	8	57026447	57026447	G	A	SNP	MOS	ENST00000311923	human	ensembl	74_37	-1	known	missense	c.95	p.A32V	0.004	superfamily_Kinase-like_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	MOS	HGNC	ENSG00000172680				38	0	0	43	8	15.6863
NSMAF	0	genome.wustl.edu	37	8	59502106	59502106	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	8	59502106	59502106	G	A	SNP	NSMAF	ENST00000427130	human	ensembl	74_37	-1	known	missense	c.2209	p.R737C	0.999	superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_BEACH_dom,pfam_WD40_repeat,pfam_GRAM,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,smart_GRAM,smart_WD40_repeat,pfscan_BEACH_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	NSMAF	HGNC	ENSG00000035681				81	0	0	77	22	22.2222
CHD7	0	genome.wustl.edu	37	8	61736543	61736543	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	8	61736543	61736543	A	G	SNP	CHD7	ENST00000423902	human	ensembl	74_37	+1	known	missense	c.3346	p.K1116E	1.000	pfam_SNF2_N,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_SNF2_N,pfam_BRK_domain,pfam_Chromo_domain,pfam_Helicase_C,superfamily_P-loop_NTPase,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,smart_BRK_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD7	HGNC	ENSG00000171316				142	0	0	160	27	14.4385
CHD7	0	genome.wustl.edu	37	8	61764728	61764728	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	8	61764728	61764728	G	A	SNP	CHD7	ENST00000423902	human	ensembl	74_37	+1	known	missense	c.5816	p.R1939Q	1.000	NULL	pfam_SNF2_N,pfam_BRK_domain,pfam_Chromo_domain,pfam_Helicase_C,superfamily_P-loop_NTPase,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,smart_BRK_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD7	HGNC	ENSG00000171316				99	0	0	105	28	21.0526
MCPH1	0	genome.wustl.edu	37	8	6302587	6302587	+	Silent	SNP	T	T	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	8	6302587	6302587	T	C	SNP	MCPH1	ENST00000344683	human	ensembl	74_37	+1	known	silent	c.1344	p.S448	0.000	pfam_Microcephalin	pfam_Microcephalin,pfam_BRCT_dom,superfamily_BRCT_dom,smart_BRCT_dom,pfscan_BRCT_dom,prints_BRCA1	-	no_errors	MCPH1	HGNC	ENSG00000147316				159	0	0	150	30	16.6667
TTPA	0	genome.wustl.edu	37	8	63973933	63973933	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	8	63973933	63973933	C	A	SNP	TTPA	ENST00000260116	human	ensembl	74_37	-1	known	missense	c.715	p.D239Y	0.514	pfam_CRAL-TRIO_dom,superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom,prints_CRAL-bd_toc_tran	pfam_CRAL-TRIO_dom,pfam_CRAL/TRIO_N_dom,superfamily_CRAL-TRIO_dom,superfamily_CRAL/TRIO_N_dom,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom,prints_CRAL-bd_toc_tran	-	no_errors	TTPA	HGNC	ENSG00000137561				88	0	0	91	16	14.9533
BHLHE22	0	genome.wustl.edu	37	8	65493774	65493774	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	8	65493774	65493774	G	A	SNP	BHLHE22	ENST00000321870	human	ensembl	74_37	+1	known	missense	c.427	p.G143S	1.000	NULL	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	BHLHE22	HGNC	ENSG00000180828				15	0	0	11	4	26.6667
ARFGEF1	0	genome.wustl.edu	37	8	68204282	68204282	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	8	68204282	68204282	T	C	SNP	ARFGEF1	ENST00000262215	human	ensembl	74_37	-1	known	missense	c.716	p.H239R	1.000	superfamily_ARM-type_fold	pfam_Sec7_dom,pfam_DUF1981_Sec7_assoc,superfamily_Sec7_dom,superfamily_ARM-type_fold,smart_Sec7_dom,pfscan_Sec7_dom	-	no_errors	ARFGEF1	HGNC	ENSG00000066777				185	0	0	242	37	13.2616
PREX2	0	genome.wustl.edu	37	8	69005938	69005938	+	Silent	SNP	T	T	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	8	69005938	69005938	T	C	SNP	PREX2	ENST00000288368	human	ensembl	74_37	+1	known	silent	c.2349	p.A783	0.989	NULL	pfam_DH-domain,pfam_DEP_dom,pfam_PDZ,superfamily_DH-domain,superfamily_PDZ,smart_DH-domain,smart_Pleckstrin_homology,smart_DEP_dom,smart_PDZ,pfscan_DEP_dom,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PREX2	HGNC	ENSG00000046889				188	0	0	192	35	15.4185
TRPA1	0	genome.wustl.edu	37	8	72975152	72975152	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	8	72975152	72975152	A	G	SNP	TRPA1	ENST00000262209	human	ensembl	74_37	-1	known	missense	c.689	p.L230S	0.000	superfamily_Ankyrin_rpt-contain_dom,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_Ion_trans_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	TRPA1	HGNC	ENSG00000104321				74	0	0	109	9	7.62712
STAU2	0	genome.wustl.edu	37	8	74525998	74525998	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	8	74525998	74525998	C	T	SNP	STAU2	ENST00000524300	human	ensembl	74_37	-1	known	missense	c.872	p.R291H	1.000	NULL	pfam_dsRNA-bd_dom,smart_dsRNA-bd_dom,pfscan_dsRNA-bd_dom	-	no_errors	STAU2	HGNC	ENSG00000040341				61	0	0	66	12	15.3846
ZBTB10	0	genome.wustl.edu	37	8	81412237	81412237	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	8	81412237	81412237	G	A	SNP	ZBTB10	ENST00000430430	human	ensembl	74_37	+1	known	missense	c.1481	p.R494Q	1.000	NULL	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB10	HGNC	ENSG00000205189				189	0	0	174	31	15.122
PAG1	0	genome.wustl.edu	37	8	81897572	81897572	+	Silent	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	8	81897572	81897572	G	A	SNP	PAG1	ENST00000220597	human	ensembl	74_37	-1	known	silent	c.315	p.Y105	0.633	NULL	NULL	-	no_errors	PAG1	HGNC	ENSG00000076641				44	0	0	38	9	19.1489
SGK223	0	genome.wustl.edu	37	8	8234218	8234218	+	Silent	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	8	8234218	8234218	C	T	SNP	SGK223	ENST00000330777	human	ensembl	74_37	-1	known	silent	c.1701	p.P567	0.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_dom	-	no_errors	SGK223	Uniprot_gn	ENSG00000182319				61	0	0	64	21	24.7059
SNX16	0	genome.wustl.edu	37	8	82736084	82736084	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	8	82736084	82736084	T	C	SNP	SNX16	ENST00000345957	human	ensembl	74_37	-1	known	missense	c.554	p.Q185R	1.000	pfam_Phox,superfamily_Phox,smart_Phox,pfscan_Phox	pfam_Phox,superfamily_Phox,smart_Phox,pfscan_Phox	-	no_errors	SNX16	HGNC	ENSG00000104497				74	0	0	79	19	19.3878
MMP16	0	genome.wustl.edu	37	8	89086858	89086858	+	Silent	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	8	89086858	89086858	G	A	SNP	MMP16	ENST00000286614	human	ensembl	74_37	-1	known	silent	c.1197	p.S399	1.000	pirsf_Pept_M10A_Metazoans,pfam_Hemopexin-like_repeat,superfamily_Hemopexin-like_dom,smart_Hemopexin-like_repeat	pirsf_Pept_M10A_Metazoans,pfam_Hemopexin-like_repeat,pfam_Pept_M10_metallopeptidase,pfam_Pept_M10A_metallopeptidase_C,pfam_Peptidoglycan-bd-like,superfamily_Hemopexin-like_dom,superfamily_Peptidoglycan-bd-like,smart_Peptidase_Metallo,smart_Hemopexin-like_repeat,prints_Pept_M10A	-	no_errors	MMP16	HGNC	ENSG00000156103				104	0	0	104	23	18.1102
DECR1	0	genome.wustl.edu	37	8	91029419	91029419	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	8	91029419	91029419	C	A	SNP	DECR1	ENST00000220764	human	ensembl	74_37	+1	known	missense	c.137	p.P46H	0.988	NULL	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,prints_Glc/ribitol_DH	-	no_errors	DECR1	HGNC	ENSG00000104325				88	0	0	85	22	20.5607
TMEM55A	0	genome.wustl.edu	37	8	92008941	92008941	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	8	92008941	92008941	G	A	SNP	TMEM55A	ENST00000285419	human	ensembl	74_37	-1	known	missense	c.571	p.R191C	1.000	pfam_Transmembrane_protein_55A/B	pfam_Transmembrane_protein_55A/B	-	no_errors	TMEM55A	HGNC	ENSG00000155099				25	0	0	21	5	19.2308
MRPL50	0	genome.wustl.edu	37	9	104160781	104160781	+	Splice_Site	SNP	A	A	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	9	104160781	104160781	A	G	SNP	MRPL50	ENST00000374865	human	ensembl	74_37	-1	known	splice_site	c.92+2	e1+2	0.999	-	-	-	no_errors	MRPL50	HGNC	ENSG00000136897				204	0	0	197	60	23.3463
ZNF462	0	genome.wustl.edu	37	9	109746489	109746489	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	9	109746489	109746489	A	C	SNP	ZNF462	ENST00000457913	human	ensembl	74_37	+1	known	missense	c.7035	p.E2345D	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF462	HGNC	ENSG00000148143				118	0	0	124	19	13.2867
RAD23B	0	genome.wustl.edu	37	9	110081036	110081036	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	9	110081036	110081036	C	T	SNP	RAD23B	ENST00000358015	human	ensembl	74_37	+1	known	missense	c.557	p.T186M	1.000	superfamily_UBA-like,tigrfam_Rad23	pfam_XPC-bd,pfam_Ubiquitin_dom,pfam_UBA/Ts_N,pfam_Rad60/SUMO_like,superfamily_XPC-bd,superfamily_UBA-like,smart_Ubiquitin_dom,smart_UBA/transl_elong_EF1B_N_euk,smart_STI1_HS-bd,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Ubiquitin_supergroup,prints_Rad23,tigrfam_Rad23	-	no_errors	RAD23B	HGNC	ENSG00000119318				242	0	0	240	71	22.8296
ACTL7B	0	genome.wustl.edu	37	9	111617896	111617896	+	Silent	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	9	111617896	111617896	C	T	SNP	ACTL7B	ENST00000374667	human	ensembl	74_37	-1	known	silent	c.315	p.T105	0.701	pfam_Actin-related,smart_Actin-related,prints_Actin-related	pfam_Actin-related,smart_Actin-related,prints_Actin-related	-	no_errors	ACTL7B	HGNC	ENSG00000148156				76	0	0	78	36	31.5789
ACTL7A	0	genome.wustl.edu	37	9	111625773	111625773	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	9	111625773	111625773	G	T	SNP	ACTL7A	ENST00000333999	human	ensembl	74_37	+1	known	missense	c.1171	p.V391L	0.996	pfam_Actin-related,smart_Actin-related	pfam_Actin-related,smart_Actin-related,prints_Actin-related	-	no_errors	ACTL7A	HGNC	ENSG00000187003				68	0	0	60	17	22.0779
HSDL2	0	genome.wustl.edu	37	9	115166397	115166397	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	9	115166397	115166397	A	G	SNP	HSDL2	ENST00000398805	human	ensembl	74_37	+1	novel	missense	c.140	p.H47R	1.000	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR	pfam_SCP2_sterol-bd_dom,pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,superfamily_SCP2_sterol-bd_dom,prints_Glc/ribitol_DH	-	no_errors	HSDL2	HGNC	ENSG00000119471				115	0	0	138	8	5.47945
ZNF883	0	genome.wustl.edu	37	9	115759687	115759687	+	RNA	SNP	T	T	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	9	115759687	115759687	T	G	SNP	ZNF883	ENST00000427548	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.922	-	-	-	no_errors	ZNF883	HGNC	ENSG00000228623				217	1	0.458716	247	69	21.8354
COL27A1	0	genome.wustl.edu	37	9	117062942	117062942	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	9	117062942	117062942	G	C	SNP	COL27A1	ENST00000356083	human	ensembl	74_37	+1	known	missense	c.4676	p.G1559A	1.000	NULL	pfam_Collagen,pfam_Fib_collagen_C,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,smart_Fib_collagen_C	-	no_errors	COL27A1	HGNC	ENSG00000196739				48	0	0	34	11	24.4444
PAPPA	0	genome.wustl.edu	37	9	118950337	118950337	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	9	118950337	118950337	C	G	SNP	PAPPA	ENST00000328252	human	ensembl	74_37	+1	known	missense	c.1320	p.C440W	1.000	pfam_Notch_dom,smart_Notch_dom	pfam_Sushi_SCR_CCP,pfam_Notch_dom,pfam_Peptidase_M43,superfamily_ConA-like_lec_gl_sf,superfamily_Sushi_SCR_CCP,superfamily_Fibronectin_type3,superfamily_Notch_dom,smart_LamG-like,smart_Notch_dom,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP,tigrfam_Myxo_disulph_rpt	-	no_errors	PAPPA	HGNC	ENSG00000182752				31	0	0	32	11	25.5814
ASTN2	0	genome.wustl.edu	37	9	119413813	119413813	+	Silent	SNP	T	T	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	9	119413813	119413813	T	C	SNP	ASTN2	ENST00000313400	human	ensembl	74_37	-1	known	silent	c.3066	p.T1022	1.000	smart_MACPF	pfam_MACPF,superfamily_Fibronectin_type3,smart_MACPF	-	no_errors	ASTN2	HGNC	ENSG00000148219				54	0	0	36	4	10
TRIM32	0	genome.wustl.edu	37	9	119461051	119461051	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	9	119461051	119461051	C	T	SNP	TRIM32	ENST00000373983	human	ensembl	74_37	+1	known	missense	c.1030	p.R344W	1.000	NULL	pfam_NHL_repeat,pfam_Znf_C3HC4_RING-type,smart_Znf_RING,smart_Znf_B-box,pfscan_NHL_repeat_subgr,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM32	HGNC	ENSG00000119401				64	0	0	65	22	25.2874
BRINP1	0	genome.wustl.edu	37	9	121971057	121971057	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	9	121971057	121971057	T	C	SNP	BRINP1	ENST00000265922	human	ensembl	74_37	-1	known	missense	c.1085	p.K362R	1.000	NULL	pfam_MACPF,smart_MACPF	-	no_errors	BRINP1	HGNC	ENSG00000078725				78	0	0	94	5	5.05051
CDK5RAP2	0	genome.wustl.edu	37	9	123210224	123210224	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	9	123210224	123210224	C	T	SNP	CDK5RAP2	ENST00000349780	human	ensembl	74_37	-1	known	missense	c.2974	p.A992T	1.000	NULL	pfam_Spindle_assoc	-	no_errors	CDK5RAP2	HGNC	ENSG00000136861				225	0	0	242	64	20.915
C5	0	genome.wustl.edu	37	9	123794459	123794459	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	9	123794459	123794459	G	A	SNP	C5	ENST00000223642	human	ensembl	74_37	-1	known	missense	c.599	p.T200M	0.933	pfam_A2M_N	pfam_A2M_comp,pfam_Macroglobln_a2,pfam_A2M_N_2,pfam_A-macroglobulin_rcpt-bd,pfam_Netrin_module_non-TIMP,pfam_A2M_N,pfam_Anaphylatoxin/fibulin,superfamily_Terpenoid_cyclase/PrenylTrfase,superfamily_TIMP-like_OB-fold,superfamily_A-macroglobulin_rcpt-bd,superfamily_Anaphylatoxin_comp_syst,smart_Anaphylatoxin/fibulin,smart_Netrin_module_non-TIMP,pfscan_Anaphylatoxin/fibulin,pfscan_Netrin_domain,prints_Anaphylatoxn_comp_syst_dom	-	no_errors	C5	HGNC	ENSG00000106804				59	0	0	56	15	21.1268
STOM	0	genome.wustl.edu	37	9	124111494	124111494	+	Silent	SNP	G	G	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	9	124111494	124111494	G	T	SNP	STOM	ENST00000286713	human	ensembl	74_37	-1	known	silent	c.429	p.T143	0.997	pfam_Band_7,smart_Band_7,prints_Stomatin	pfam_Band_7,smart_Band_7,prints_Stomatin	-	no_errors	STOM	HGNC	ENSG00000148175				80	0	0	106	19	15.2
STOM	0	genome.wustl.edu	37	9	124116898	124116898	+	Silent	SNP	T	T	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	9	124116898	124116898	T	C	SNP	STOM	ENST00000286713	human	ensembl	74_37	-1	known	silent	c.219	p.Q73	1.000	pfam_Band_7,smart_Band_7,prints_Stomatin	pfam_Band_7,smart_Band_7,prints_Stomatin	-	no_errors	STOM	HGNC	ENSG00000148175				88	0	0	92	6	6.12245
STRBP	0	genome.wustl.edu	37	9	125909141	125909141	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	9	125909141	125909141	G	A	SNP	STRBP	ENST00000348403	human	ensembl	74_37	-1	known	missense	c.1331	p.A444V	1.000	pfam_dsRNA-bd_dom,smart_dsRNA-bd_dom,pfscan_dsRNA-bd_dom	pfam_DZF,pfam_dsRNA-bd_dom,smart_DZF,smart_dsRNA-bd_dom,pfscan_dsRNA-bd_dom	-	no_errors	STRBP	HGNC	ENSG00000165209				113	0	0	121	26	17.6871
ZNF79	0	genome.wustl.edu	37	9	130197442	130197442	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	9	130197442	130197442	G	A	SNP	ZNF79	ENST00000342483	human	ensembl	74_37	+1	known	missense	c.179	p.R60Q	0.000	superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF79	HGNC	ENSG00000196152				115	0	0	102	47	31.5436
FAM129B	0	genome.wustl.edu	37	9	130280190	130280190	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	9	130280190	130280190	G	T	SNP	FAM129B	ENST00000373312	human	ensembl	74_37	-1	known	missense	c.620	p.P207H	0.998	NULL	pfscan_Pleckstrin_homology	-	no_errors	FAM129B	HGNC	ENSG00000136830				20	0	0	21	4	16
ENSG00000257524	0	genome.wustl.edu	37	9	130630270	130630270	+	RNA	SNP	A	A	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	9	130630270	130630270	A	G	SNP	ENSG00000257524	ENST00000476274	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	RP11-203J24.9	Clone_based_vega_gene	ENSG00000257524				92	0	0	81	20	19.802
DNM1	0	genome.wustl.edu	37	9	130986540	130986540	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	9	130986540	130986540	T	C	SNP	DNM1	ENST00000372923	human	ensembl	74_37	+1	known	missense	c.1207	p.F403L	1.000	pfam_Dynamin_central	pfam_Dynamin_central,pfam_Dynamin_GTPase,pfam_GED,pfam_Pleckstrin_homology,superfamily_P-loop_NTPase,smart_Dynamin_GTPase,smart_Pleckstrin_homology,smart_GED,pfscan_Pleckstrin_homology,prints_Dynamin_SF	-	no_errors	DNM1	HGNC	ENSG00000106976				63	0	0	52	3	5.45455
MPDZ	0	genome.wustl.edu	37	9	13110649	13110649	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	9	13110649	13110649	A	G	SNP	MPDZ	ENST00000319217	human	ensembl	74_37	-1	known	missense	c.5815	p.S1939P	1.000	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_PDZ,pfam_L27_2,superfamily_PDZ,smart_PDZ,pfscan_L27,pfscan_PDZ	-	no_errors	MPDZ	HGNC	ENSG00000107186				42	0	0	43	11	20.3704
ODF2	0	genome.wustl.edu	37	9	131222848	131222848	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	9	131222848	131222848	G	A	SNP	ODF2	ENST00000351030	human	ensembl	74_37	+1	known	missense	c.11	p.R4H	1.000	NULL	NULL	-	no_errors	ODF2	HGNC	ENSG00000136811				181	0	0	158	41	20.603
PKN3	0	genome.wustl.edu	37	9	131468079	131468079	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	9	131468079	131468079	G	A	SNP	PKN3	ENST00000291906	human	ensembl	74_37	+1	known	missense	c.332	p.R111Q	0.983	pfam_HR1_rho-bd,superfamily_HR1_rho-bd,smart_HR1_rho-bd	pfam_Prot_kinase_dom,pfam_HR1_rho-bd,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_HR1_rho-bd,superfamily_C2_dom,smart_HR1_rho-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_Prot_kinase_dom	-	no_errors	PKN3	HGNC	ENSG00000160447				10	0	0	17	7	29.1667
MPDZ	0	genome.wustl.edu	37	9	13221391	13221391	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	9	13221391	13221391	G	T	SNP	MPDZ	ENST00000319217	human	ensembl	74_37	-1	known	missense	c.856	p.P286T	1.000	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_PDZ,pfam_L27_2,superfamily_PDZ,smart_PDZ,pfscan_L27,pfscan_PDZ	-	no_errors	MPDZ	HGNC	ENSG00000107186				92	0	0	88	22	20
FNBP1	0	genome.wustl.edu	37	9	132671268	132671268	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	9	132671268	132671268	G	A	SNP	FNBP1	ENST00000446176	human	ensembl	74_37	-1	known	missense	c.1196	p.P399L	0.993	superfamily_HR1_rho-bd	pfam_FCH_dom,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,superfamily_Ribosomal_S20,superfamily_HR1_rho-bd,smart_FCH_dom,smart_SH3_domain,pfscan_FCH_dom,pfscan_SH3_domain	-	no_errors	FNBP1	HGNC	ENSG00000187239				30	0	0	42	12	22.2222
ABL1	0	genome.wustl.edu	37	9	133759579	133759579	+	Silent	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	9	133759579	133759579	C	T	SNP	ABL1	ENST00000372348	human	ensembl	74_37	+1	known	silent	c.1959	p.G653	0.000	NULL	pfam_F-actin_binding,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_SH2,pfam_SH3_domain,pfam_SH3_2,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_SH3_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_F-actin_binding,pfscan_SH2,pfscan_SH3_domain,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2	-	no_errors	ABL1	HGNC	ENSG00000097007				107	0	0	135	34	20.1183
PRRC2B	0	genome.wustl.edu	37	9	134357813	134357813	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	9	134357813	134357813	G	A	SNP	PRRC2B	ENST00000357304	human	ensembl	74_37	+1	known	missense	c.5039	p.R1680Q	1.000	NULL	pfam_BAT2_N	-	no_errors	PRRC2B	HGNC	ENSG00000130723				297	1	0.33557	311	70	18.3727
ABO	0	genome.wustl.edu	37	9	136131589	136131589	+	RNA	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	9	136131589	136131589	C	T	SNP	ABO	ENST00000453660	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ABO	HGNC	ENSG00000175164				17	0	0	16	8	33.3333
C9orf96	0	genome.wustl.edu	37	9	136251429	136251429	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	9	136251429	136251429	C	T	SNP	C9orf96	ENST00000371957	human	ensembl	74_37	+1	known	missense	c.248	p.A83V	0.661	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	C9orf96	HGNC	ENSG00000198870				113	0	0	99	18	15.3846
CACFD1	0	genome.wustl.edu	37	9	136328610	136328610	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	9	136328610	136328610	G	A	SNP	CACFD1	ENST00000540581	human	ensembl	74_37	+1	known	missense	c.127	p.A43T	1.000	pfam_TVP18/Ca-channel_flower	pfam_TVP18/Ca-channel_flower	-	no_errors	CACFD1	HGNC	ENSG00000160325				156	0	0	166	44	20.9524
CACFD1	0	genome.wustl.edu	37	9	136328658	136328658	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	9	136328658	136328658	G	A	SNP	CACFD1	ENST00000540581	human	ensembl	74_37	+1	known	missense	c.175	p.A59T	0.998	pfam_TVP18/Ca-channel_flower	pfam_TVP18/Ca-channel_flower	-	no_errors	CACFD1	HGNC	ENSG00000160325				165	0	0	161	32	16.5803
FCN2	0	genome.wustl.edu	37	9	137777737	137777737	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	9	137777737	137777737	G	A	SNP	FCN2	ENST00000291744	human	ensembl	74_37	+1	known	missense	c.553	p.A185T	0.027	pfam_Fibrinogen_a/b/g_C_dom,superfamily_Fibrinogen_a/b/g_C_dom,smart_Fibrinogen_a/b/g_C_dom	pfam_Fibrinogen_a/b/g_C_dom,pfam_Collagen,superfamily_Fibrinogen_a/b/g_C_dom,smart_Fibrinogen_a/b/g_C_dom	-	no_errors	FCN2	HGNC	ENSG00000160339				63	0	0	62	12	16.2162
KCNT1	0	genome.wustl.edu	37	9	138649027	138649027	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	9	138649027	138649027	G	A	SNP	KCNT1	ENST00000298480	human	ensembl	74_37	+1	known	missense	c.626	p.R209H	0.673	NULL	pfam_K_chnl_Ca-activ_BK_asu,pfam_2pore_dom_K_chnl_dom	-	no_errors	KCNT1	HGNC	ENSG00000107147				115	0	0	117	25	17.6056
CAMSAP1	0	genome.wustl.edu	37	9	138712780	138712780	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	9	138712780	138712780	C	G	SNP	CAMSAP1	ENST00000409386	human	ensembl	74_37	-1	known	missense	c.3760	p.A1254P	1.000	NULL	pfam_CKK_domain,pfam_CAMSAP_CH,pfam_CH-domain,superfamily_PRC_barrel-like,superfamily_CH-domain	-	no_errors	CAMSAP1	HGNC	ENSG00000130559				54	0	0	58	15	20.5479
UBAC1	0	genome.wustl.edu	37	9	138847166	138847166	+	Silent	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	9	138847166	138847166	G	A	SNP	UBAC1	ENST00000371756	human	ensembl	74_37	-1	known	silent	c.234	p.I78	0.338	NULL	pfam_UBA/Ts_N,superfamily_UBA-like,smart_UBA/transl_elong_EF1B_N_euk,smart_STI1_HS-bd,pfscan_UBA/transl_elong_EF1B_N_euk	-	no_errors	UBAC1	HGNC	ENSG00000130560				473	0	0	547	61	10.0329
NOTCH1	0	genome.wustl.edu	37	9	139396735	139396735	+	Silent	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	9	139396735	139396735	G	A	SNP	NOTCH1	ENST00000277541	human	ensembl	74_37	-1	known	silent	c.5373	p.S1791	0.604	pirsf_Notch	pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,pfam_Ankyrin_rpt,pfam_EGF_extracell,pfam_Notch_NOD_dom,pfam_DUF3454_notch,pfam_Notch_NODP_dom,superfamily_Ankyrin_rpt-contain_dom,superfamily_Notch_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Notch_dom,smart_Ankyrin_rpt,pirsf_Notch,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_EG-like_dom,pfscan_Notch_dom,prints_Notch_1,prints_Notch_dom	-	no_errors	NOTCH1	HGNC	ENSG00000148400				38	0	0	25	5	16.6667
SNHG7	0	genome.wustl.edu	37	9	139616505	139616505	+	RNA	SNP	G	G	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	9	139616505	139616505	G	T	SNP	SNHG7	ENST00000414282	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.112	-	-	-	no_errors	SNHG7	HGNC	ENSG00000233016				72	0	0	61	14	18.6667
LCN8	0	genome.wustl.edu	37	9	139649870	139649870	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	9	139649870	139649870	A	G	SNP	LCN8	ENST00000371688	human	ensembl	74_37	-1	known	missense	c.325	p.Y109H	1.000	pfam_Lipocln_cytosolic_FA-bd_dom,superfamily_Calycin-like	pfam_Lipocln_cytosolic_FA-bd_dom,superfamily_Calycin-like	-	no_errors	LCN8	HGNC	ENSG00000204001				33	0	0	45	3	6.25
FBXW5	0	genome.wustl.edu	37	9	139836484	139836484	+	RNA	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	9	139836484	139836484	C	T	SNP	FBXW5	ENST00000487794	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	FBXW5	HGNC	ENSG00000159069				21	0	0	32	5	13.5135
ABCA2	0	genome.wustl.edu	37	9	139911742	139911742	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	9	139911742	139911742	A	G	SNP	ABCA2	ENST00000265662	human	ensembl	74_37	-1	known	missense	c.2459	p.I820T	1.000	NULL	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA2	HGNC	ENSG00000107331				62	0	0	50	10	16.6667
MAN1B1	0	genome.wustl.edu	37	9	140002104	140002104	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	9	140002104	140002104	G	A	SNP	MAN1B1	ENST00000371589	human	ensembl	74_37	+1	known	missense	c.1886	p.R629Q	0.039	pfam_Glyco_hydro_47,superfamily_Glyco_hydro_47	pfam_Glyco_hydro_47,superfamily_Glyco_hydro_47,prints_Glyco_hydro_47	-	no_errors	MAN1B1	HGNC	ENSG00000177239				138	0	0	158	51	24.4019
GRIN1	0	genome.wustl.edu	37	9	140058119	140058119	+	Silent	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	9	140058119	140058119	C	T	SNP	GRIN1	ENST00000371561	human	ensembl	74_37	+1	known	silent	c.2442	p.A814	1.000	pfam_Iontro_glu_rcpt,prints_NMDA_rcpt	pfam_Iontro_glu_rcpt,pfam_ANF_lig-bd_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,pfam_CaM-bd_C0_NMDA_rcpt_NR1,superfamily_Peripla_BP_I,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIN1	HGNC	ENSG00000176884				43	0	0	56	13	18.8406
NSMF	0	genome.wustl.edu	37	9	140348239	140348239	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	9	140348239	140348239	C	T	SNP	NSMF	ENST00000371475	human	ensembl	74_37	-1	known	missense	c.866	p.R289Q	1.000	NULL	superfamily_P-loop_NTPase	-	no_errors	NSMF	HGNC	ENSG00000165802				18	0	0	11	5	31.25
EHMT1	0	genome.wustl.edu	37	9	140611142	140611142	+	Silent	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	9	140611142	140611142	G	A	SNP	EHMT1	ENST00000460843	human	ensembl	74_37	+1	known	silent	c.150	p.A50	0.002	NULL	pfam_Ankyrin_rpt,pfam_SET_dom,pfam_Pre-SET_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Pre-SET_Zn-bd_sub,smart_SET_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SET_dom,pfscan_Pre-SET_dom,prints_Ankyrin_rpt	-	no_errors	EHMT1	HGNC	ENSG00000181090				105	1	0.943396	126	21	14.2857
CBWD1	0	genome.wustl.edu	37	9	164038	164038	+	Splice_Site	SNP	C	C	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	9	164038	164038	C	G	SNP	CBWD1	ENST00000356521	human	ensembl	74_37	-1	known	splice_site	c.431-1	e5-1	1.000	-	-	-	no_errors	CBWD1	HGNC	ENSG00000172785				164	1	0.606061	220	21	8.71369
SH3GL2	0	genome.wustl.edu	37	9	17795624	17795624	+	Silent	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	9	17795624	17795624	C	T	SNP	SH3GL2	ENST00000380607	human	ensembl	74_37	+1	known	silent	c.942	p.G314	0.760	pfam_SH3_2,pfam_SH3_domain,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain,prints_SH3_domain,prints_Spectrin_alpha_SH3	pfam_BAR_dom,pfam_SH3_2,pfam_SH3_domain,pfam_BAR_dom-cont,superfamily_SH3_domain,smart_BAR_dom,smart_SH3_domain,pfscan_BAR_dom,pfscan_SH3_domain,prints_SH3_domain,prints_Spectrin_alpha_SH3	-	no_errors	SH3GL2	HGNC	ENSG00000107295				69	0	0	82	5	5.74713
IFNA17	0	genome.wustl.edu	37	9	21227953	21227953	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	9	21227953	21227953	T	C	SNP	IFNA17	ENST00000413767	human	ensembl	74_37	-1	known	missense	c.220	p.T74A	0.892	pfam_Interferon_alpha/beta/delta,superfamily_4_helix_cytokine-like_core,smart_Interferon_alpha/beta/delta	pfam_Interferon_alpha/beta/delta,superfamily_4_helix_cytokine-like_core,smart_Interferon_alpha/beta/delta,prints_Interferon_alpha/beta/delta	-	no_errors	IFNA17	HGNC	ENSG00000234829				212	0	0	237	38	13.8182
TEK	0	genome.wustl.edu	37	9	27206671	27206671	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	9	27206671	27206671	T	C	SNP	TEK	ENST00000380036	human	ensembl	74_37	+1	known	missense	c.2456	p.L819P	1.000	superfamily_Kinase-like_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Tyr_kin_Tie2_Ig-like_dom-1_N,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,smart_EG-like_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_EG-like_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	TEK	HGNC	ENSG00000120156				49	0	0	60	4	6.25
TEK	0	genome.wustl.edu	37	9	27229174	27229174	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	9	27229174	27229174	C	T	SNP	TEK	ENST00000380036	human	ensembl	74_37	+1	known	missense	c.3319	p.L1107F	0.998	superfamily_Kinase-like_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Tyr_kin_Tie2_Ig-like_dom-1_N,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,smart_EG-like_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_EG-like_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	TEK	HGNC	ENSG00000120156				189	0	0	163	55	25.2294
LINGO2	0	genome.wustl.edu	37	9	27949193	27949193	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	9	27949193	27949193	T	C	SNP	LINGO2	ENST00000308675	human	ensembl	74_37	-1	known	missense	c.1477	p.T493A	1.000	pfam_Ig_I-set,pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Leu-rich_rpt,pfam_Ig_V-set,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	LINGO2	HGNC	ENSG00000174482				99	0	0	121	24	16.5517
DDX58	0	genome.wustl.edu	37	9	32466435	32466435	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	9	32466435	32466435	T	C	SNP	DDX58	ENST00000545044	human	ensembl	74_37	-1	known	missense	c.1577	p.E526G	1.000	pfscan_Helicase_C	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase/UvrB_dom,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DDX58	HGNC	ENSG00000107201				48	0	0	54	3	5.26316
NFX1	0	genome.wustl.edu	37	9	33295421	33295421	+	Silent	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	9	33295421	33295421	C	T	SNP	NFX1	ENST00000379540	human	ensembl	74_37	+1	known	silent	c.1029	p.H343	0.990	NULL	pfam_Znf_NFX1,pfam_R3H_ss-bd,smart_Znf_RING,smart_Znf_NFX1,smart_R3H_ss-bd,pfscan_Znf_PHD-finger,pfscan_Znf_RING,pfscan_R3H_ss-bd	-	no_errors	NFX1	HGNC	ENSG00000086102				51	0	0	75	7	8.53659
NOL6	0	genome.wustl.edu	37	9	33466161	33466161	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	9	33466161	33466161	G	A	SNP	NOL6	ENST00000297990	human	ensembl	74_37	-1	known	nonsense	c.2272	p.R758*	1.000	pfam_Nrap	pfam_Nrap	-	no_errors	NOL6	HGNC	ENSG00000165271				68	0	0	57	17	22.973
PTENP1	0	genome.wustl.edu	37	9	33675379	33675379	+	RNA	SNP	C	C	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	9	33675379	33675379	C	A	SNP	PTENP1	ENST00000532280	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.999	-	-	-	no_errors	PTENP1	HGNC	ENSG00000237984				14	0	0	15	4	21.0526
PTENP1	0	genome.wustl.edu	37	9	33675400	33675400	+	RNA	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	9	33675400	33675400	G	A	SNP	PTENP1	ENST00000532280	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	PTENP1	HGNC	ENSG00000237984				18	0	0	30	4	11.7647
VCP	0	genome.wustl.edu	37	9	35065361	35065361	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	9	35065361	35065361	G	A	SNP	VCP	ENST00000358901	human	ensembl	74_37	-1	known	missense	c.463	p.R155C	1.000	pfam_Cdc48_dom2,tigrfam_AAA_ATPase_CDC48	pfam_ATPase_AAA_core,pfam_CDC4_N-term_subdom,pfam_DNA_helicase_Holl-junc_RuvB_N,pfam_Cdc48_dom2,pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA-2,pfam_Vps4_C,superfamily_P-loop_NTPase,superfamily_Asp_de-COase-like_dom,smart_AAA+_ATPase,tigrfam_AAA_ATPase_CDC48	-	no_errors	VCP	HGNC	ENSG00000165280				52	0	0	47	8	14.5455
ATP8B5P	0	genome.wustl.edu	37	9	35449950	35449950	+	RNA	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	9	35449950	35449950	C	T	SNP	ATP8B5P	ENST00000430846	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.014	-	-	-	no_errors	ATP8B5P	HGNC	ENSG00000179766				54	0	0	70	11	13.5802
TLN1	0	genome.wustl.edu	37	9	35719097	35719097	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	9	35719097	35719097	G	A	SNP	TLN1	ENST00000314888	human	ensembl	74_37	-1	known	missense	c.1870	p.R624C	1.000	pfam_Talin_cent,superfamily_Talin_cent	pfam_Talin_cent,pfam_Vinculin-bd_dom,pfam_ILWEQ_dom,pfam_FERM_N,pfam_FERM_central,pfam_Insln_rcpt_S1,superfamily_Talin_cent,superfamily_Vinculin/catenin,superfamily_FERM_central,smart_Band_41_domain,smart_ILWEQ_dom,pfscan_FERM_domain,pfscan_ILWEQ_dom	-	no_errors	TLN1	HGNC	ENSG00000137076				65	0	0	42	8	16
OR13J1	0	genome.wustl.edu	37	9	35869832	35869832	+	Silent	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	9	35869832	35869832	G	A	SNP	OR13J1	ENST00000377981	human	ensembl	74_37	-1	known	silent	c.567	p.C189	0.070	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR13J1	HGNC	ENSG00000168828				64	0	0	96	17	15.0442
RNF38	0	genome.wustl.edu	37	9	36369774	36369774	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	9	36369774	36369774	A	G	SNP	RNF38	ENST00000259605	human	ensembl	74_37	-1	known	missense	c.512	p.L171P	1.000	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF38	HGNC	ENSG00000137075				186	1	0.534759	189	13	6.43564
POLR1E	0	genome.wustl.edu	37	9	37493650	37493650	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	9	37493650	37493650	G	A	SNP	POLR1E	ENST00000377792	human	ensembl	74_37	+1	known	missense	c.683	p.R228H	0.000	pfam_RNA_pol-assoc_fac_A49-like	pfam_RNA_pol-assoc_fac_A49-like	-	no_errors	POLR1E	HGNC	ENSG00000137054				95	0	0	89	28	23.9316
DOCK8	0	genome.wustl.edu	37	9	376262	376262	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	9	376262	376262	T	C	SNP	DOCK8	ENST00000453981	human	ensembl	74_37	+1	known	missense	c.2162	p.V721A	1.000	NULL	pfam_DOCK_C,pfam_DOCK_C/D_N,superfamily_ARM-type_fold	-	no_errors	DOCK8	HGNC	ENSG00000107099				207	0	0	209	54	20.5323
FRMPD1	0	genome.wustl.edu	37	9	37744582	37744582	+	Silent	SNP	A	A	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	9	37744582	37744582	A	G	SNP	FRMPD1	ENST00000377765	human	ensembl	74_37	+1	known	silent	c.2553	p.S851	0.056	NULL	pfam_FERM_central,pfam_PDZ,pfam_FERM_N,superfamily_FERM_central,superfamily_PDZ,smart_PDZ,smart_Band_41_domain,pfscan_FERM_domain,pfscan_PDZ	-	no_errors	FRMPD1	HGNC	ENSG00000070601				75	0	0	94	6	6
GLIS3	0	genome.wustl.edu	37	9	3829471	3829471	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	9	3829471	3829471	T	G	SNP	GLIS3	ENST00000381971	human	ensembl	74_37	-1	known	missense	c.2495	p.K832T	0.996	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	GLIS3	HGNC	ENSG00000107249				67	0	0	74	15	16.8539
SPATA31A6	0	genome.wustl.edu	37	9	43626961	43626961	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	9	43626961	43626961	T	G	SNP	SPATA31A6	ENST00000332857	human	ensembl	74_37	-1	known	missense	c.1726	p.S576R	0.000	NULL	NULL	-	no_errors	SPATA31A6	HGNC	ENSG00000185775				117	0	0	160	13	7.51445
JAK2	0	genome.wustl.edu	37	9	5050706	5050706	+	Silent	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	9	5050706	5050706	C	T	SNP	JAK2	ENST00000381652	human	ensembl	74_37	+1	known	silent	c.489	p.H163	0.974	superfamily_FERM_central,smart_Band_41_domain,pirsf_Tyr_kinase_non-rcpt_Jak/Tyk2,pfscan_FERM_domain	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_SH2,superfamily_Kinase-like_dom,superfamily_FERM_central,smart_Band_41_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Tyr_kinase_non-rcpt_Jak/Tyk2,pfscan_FERM_domain,pfscan_SH2,pfscan_Prot_kinase_dom,prints_Tyr_kinase_non-rcpt_Jak/Tyk2,prints_Tyr_kinase_non-rcpt_Jak2,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	JAK2	HGNC	ENSG00000096968				104	0	0	75	28	27.1845
CD274	0	genome.wustl.edu	37	9	5467858	5467858	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	9	5467858	5467858	C	T	SNP	CD274	ENST00000381577	human	ensembl	74_37	+1	known	missense	c.869	p.T290M	1.000	NULL	pfam_Ig_V-set,pfam_Immunoglobulin,pfam_CD80_C2-set,pfam_Ig_C1-set,smart_Ig_sub,pfscan_Ig-like_dom	-	no_errors	CD274	HGNC	ENSG00000120217				87	0	0	65	27	29.3478
UHRF2	0	genome.wustl.edu	37	9	6498070	6498070	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	9	6498070	6498070	G	A	SNP	UHRF2	ENST00000276893	human	ensembl	74_37	+1	known	missense	c.1820	p.R607H	1.000	pfam_SRA_YDG,smart_SRA_YDG,pfscan_SRA_YDG	pfam_SRA_YDG,pfam_DUF3590,pfam_Ubiquitin_dom,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Ubiquitin_dom,smart_Znf_PHD,smart_Znf_RING,smart_SRA_YDG,pfscan_SRA_YDG,pfscan_Znf_PHD-finger,pfscan_Znf_RING,pfscan_Ubiquitin_supergroup	-	no_errors	UHRF2	HGNC	ENSG00000147854				100	0	0	94	25	21.0084
GLDC	0	genome.wustl.edu	37	9	6605272	6605272	+	Silent	SNP	A	A	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	9	6605272	6605272	A	G	SNP	GLDC	ENST00000321612	human	ensembl	74_37	-1	known	silent	c.720	p.T240	0.030	pfam_GDC-P_N,superfamily_PyrdxlP-dep_Trfase,tigrfam_GDC_P_homo	pfam_GDC-P_N,pfam_ArAA_b-elim_lyase/Thr_aldolase,superfamily_PyrdxlP-dep_Trfase,tigrfam_GDC_P_homo	-	no_errors	GLDC	HGNC	ENSG00000178445				55	0	0	45	17	27.4194
KDM4C	0	genome.wustl.edu	37	9	7013988	7013988	+	Silent	SNP	A	A	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	9	7013988	7013988	A	G	SNP	KDM4C	ENST00000381309	human	ensembl	74_37	+1	known	silent	c.2169	p.V723	0.953	superfamily_Znf_FYVE_PHD,smart_Znf_PHD	pfam_JmjC_dom,pfam_TF_JmjN,superfamily_Znf_FYVE_PHD,superfamily_Chorismate_mutase_type_II,smart_TF_JmjN,smart_JmjC_dom,smart_Znf_PHD,smart_Tudor,pfscan_TF_JmjN,pfscan_JmjC_dom	-	no_errors	KDM4C	HGNC	ENSG00000107077				196	0	0	180	75	29.4118
PGM5	0	genome.wustl.edu	37	9	70993145	70993145	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	9	70993145	70993145	A	G	SNP	PGM5	ENST00000396396	human	ensembl	74_37	+1	known	missense	c.292	p.I98V	1.000	pfam_A-D-PHexomutase_a/b/a-I,superfamily_A-D-PHexomutase_a/b/a-I/II/III	pfam_A-D-PHexomutase_a/b/a-I,pfam_A-D-PHexomutase_a/b/a-III,pfam_A-D-PHexomutase_a/b/a-II,superfamily_A-D-PHexomutase_a/b/a-I/II/III,prints_Alpha-D-phosphohexomutase_SF	-	no_errors	PGM5	HGNC	ENSG00000154330				68	0	0	149	35	19.0217
TJP2	0	genome.wustl.edu	37	9	71836092	71836092	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	9	71836092	71836092	G	A	SNP	TJP2	ENST00000539225	human	ensembl	74_37	+1	known	missense	c.725	p.R242H	0.000	NULL	pfam_PDZ,pfam_GK/Ca_channel_bsu,pfam_SH3_2,superfamily_PDZ,superfamily_P-loop_NTPase,superfamily_SH3_domain,smart_PDZ,smart_GK/Ca_channel_bsu,pfscan_PDZ,pfscan_SH3_domain,pfscan_Guanylate_kin-like,prints_ZonOcculS2,prints_ZonOcculdens	-	no_errors	TJP2	HGNC	ENSG00000119139				21	0	0	16	4	20
TRPM3	0	genome.wustl.edu	37	9	73152166	73152166	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	9	73152166	73152166	G	A	SNP	TRPM3	ENST00000423814	human	ensembl	74_37	-1	known	missense	c.3908	p.A1303V	0.898	NULL	pfam_Ion_trans_dom	-	no_errors	TRPM3	HGNC	ENSG00000083067				102	0	0	113	30	20.979
TMEM2	0	genome.wustl.edu	37	9	74332975	74332975	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	9	74332975	74332975	G	A	SNP	TMEM2	ENST00000377044	human	ensembl	74_37	-1	known	missense	c.2288	p.A763V	1.000	superfamily_Pectin_lyase_fold/virulence	pfam_G8_domain,superfamily_Pectin_lyase_fold/virulence	-	no_errors	TMEM2	HGNC	ENSG00000135048				160	0	0	160	46	22.3301
RORB	0	genome.wustl.edu	37	9	77300472	77300472	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	9	77300472	77300472	A	G	SNP	RORB	ENST00000396204	human	ensembl	74_37	+1	known	missense	c.1351	p.T451A	1.000	pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,prints_ROR_rcpt	pfam_Znf_hrmn_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,prints_ROR_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,prints_ThyrH_rcpt,pfscan_Znf_hrmn_rcpt	-	no_errors	RORB	HGNC	ENSG00000198963				162	0	0	192	11	5.41872
FOXB2	0	genome.wustl.edu	37	9	79635851	79635851	+	Silent	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	9	79635851	79635851	G	A	SNP	FOXB2	ENST00000376708	human	ensembl	74_37	+1	known	silent	c.1281	p.S427	0.997	NULL	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head,prints_Antifreeze_1	-	no_errors	FOXB2	HGNC	ENSG00000204612				15	0	0	16	4	20
TLE4	0	genome.wustl.edu	37	9	82321726	82321726	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	9	82321726	82321726	G	A	SNP	TLE4	ENST00000376520	human	ensembl	74_37	+1	known	missense	c.848	p.R283H	1.000	NULL	pfam_Groucho/TLE_N,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Groucho_enhance	-	no_errors	TLE4	HGNC	ENSG00000106829				303	0	0	247	63	20.3226
TLE1	0	genome.wustl.edu	37	9	84225140	84225140	+	Silent	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	9	84225140	84225140	C	T	SNP	TLE1	ENST00000376499	human	ensembl	74_37	-1	known	silent	c.1326	p.G442	0.420	superfamily_WD40_repeat_dom	pfam_Groucho/TLE_N,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Groucho_enhance	-	no_errors	TLE1	HGNC	ENSG00000196781				43	0	0	34	9	20.9302
SPATA31D3	0	genome.wustl.edu	37	9	84562558	84562558	+	RNA	SNP	A	A	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	9	84562558	84562558	A	C	SNP	SPATA31D3	ENST00000334208	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.066	-	-	-	no_errors	SPATA31D3	HGNC	ENSG00000186788				100	0	0	98	16	14.0351
DAPK1	0	genome.wustl.edu	37	9	90264945	90264945	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	9	90264945	90264945	C	T	SNP	DAPK1	ENST00000469640	human	ensembl	74_37	+1	known	missense	c.1538	p.T513M	0.994	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Prot_kinase_dom,pfam_Ankyrin_rpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Death_domain,pfam_LipoPS_kinase,pfam_RIO-like_kinase,superfamily_Kinase-like_dom,superfamily_Ankyrin_rpt-contain_dom,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Ankyrin_rpt,smart_Death_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Death_domain,pfscan_Prot_kinase_dom,prints_Ankyrin_rpt	-	no_errors	DAPK1	HGNC	ENSG00000196730				64	0	0	62	9	12.6761
DIRAS2	0	genome.wustl.edu	37	9	93376013	93376013	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	9	93376013	93376013	G	A	SNP	DIRAS2	ENST00000375765	human	ensembl	74_37	-1	known	missense	c.97	p.R33W	1.000	pfam_Small_GTPase,pfam_MIRO-like,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	DIRAS2	HGNC	ENSG00000165023				228	0	0	243	74	23.3438
SYK	0	genome.wustl.edu	37	9	93650880	93650880	+	Silent	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	9	93650880	93650880	C	T	SNP	SYK	ENST00000375746	human	ensembl	74_37	+1	known	silent	c.1806	p.Y602	0.270	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Tyr_kinase_non-rcpt_SYK/ZAP70,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_SH2,superfamily_Kinase-like_dom,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Tyr_kinase_non-rcpt_SYK/ZAP70,pfscan_SH2,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2	-	no_errors	SYK	HGNC	ENSG00000165025				24	0	0	18	5	21.7391
AUH	0	genome.wustl.edu	37	9	93978376	93978376	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	9	93978376	93978376	T	C	SNP	AUH	ENST00000375731	human	ensembl	74_37	-1	known	missense	c.907	p.T303A	0.993	NULL	pfam_Crotonase_core_superfam	-	no_errors	AUH	HGNC	ENSG00000148090				107	0	0	98	25	20.3252
WNK2	0	genome.wustl.edu	37	9	95997117	95997117	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	9	95997117	95997117	T	C	SNP	WNK2	ENST00000297954	human	ensembl	74_37	+1	known	missense	c.1103	p.M368T	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Kinase_OSR1/WNK_CCT,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	WNK2	HGNC	ENSG00000165238				44	0	0	44	3	6.38298
FAM120A	0	genome.wustl.edu	37	9	96320179	96320179	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	9	96320179	96320179	G	T	SNP	FAM120A	ENST00000333936	human	ensembl	74_37	+1	known	missense	c.2639	p.S880I	1.000	NULL	NULL	-	no_errors	FAM120A	HGNC	ENSG00000048828				38	0	0	31	8	20.5128
ERCC6L2	0	genome.wustl.edu	37	9	98728851	98728851	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	9	98728851	98728851	A	G	SNP	ERCC6L2	ENST00000437817	human	ensembl	74_37	+1	known	missense	c.1421	p.H474R	1.000	pfam_HDA_complex_subunit-2/3,superfamily_P-loop_NTPase,pfscan_Helicase_C	pfam_SNF2_N,pfam_Helicase_C,pfam_HDA_complex_subunit-2/3,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	ERCC6L2	HGNC	ENSG00000182150				140	0	0	117	37	24.026
ZNF510	0	genome.wustl.edu	37	9	99537116	99537116	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	9	99537116	99537116	C	T	SNP	ZNF510	ENST00000223428	human	ensembl	74_37	-1	known	missense	c.83	p.R28Q	0.023	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF510	HGNC	ENSG00000081386				86	0	0	91	24	20.8696
DRP2	0	genome.wustl.edu	37	X	100505457	100505457	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	X	100505457	100505457	G	A	SNP	DRP2	ENST00000395209	human	ensembl	74_37	+1	known	missense	c.1586	p.R529H	1.000	pfam_EF-hand_dom_typ2,pirsf_Dystrophin-related_2	pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_Znf_ZZ,pfam_Spectrin_repeat,pfam_WW_dom,superfamily_WW_dom,smart_Spectrin/alpha-actinin,smart_WW_dom,smart_Znf_ZZ,pirsf_Dystrophin-related_2,pfscan_WW_dom,pfscan_Znf_ZZ	-	no_errors	DRP2	HGNC	ENSG00000102385				236	0	0	169	66	28.0851
GLA	0	genome.wustl.edu	37	X	100653764	100653764	+	RNA	SNP	A	A	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	X	100653764	100653764	A	C	SNP	GLA	ENST00000468823	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	GLA	HGNC	ENSG00000102393				290	0	0	218	84	27.8146
NXF4	0	genome.wustl.edu	37	X	101823513	101823513	+	RNA	SNP	T	T	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	X	101823513	101823513	T	C	SNP	NXF4	ENST00000360035	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.853	-	-	-	no_errors	NXF4	HGNC	ENSG00000196970				18	0	0	13	4	23.5294
NRK	0	genome.wustl.edu	37	X	105142690	105142690	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	X	105142690	105142690	C	T	SNP	NRK	ENST00000428173	human	ensembl	74_37	+1	known	missense	c.694	p.R232C	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Citron,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Citron,pfscan_Prot_kinase_dom	-	no_errors	NRK	HGNC	ENSG00000123572				20	0	0	11	5	31.25
IRS4	0	genome.wustl.edu	37	X	107976465	107976465	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	X	107976465	107976465	C	T	SNP	IRS4	ENST00000372129	human	ensembl	74_37	-1	known	missense	c.3110	p.R1037H	1.000	NULL	pfam_Insln_rcpt_S1,smart_Pleckstrin_homology,smart_Insln_rcpt_S1,pfscan_Pleckstrin_homology,pfscan_Insln_rcpt_S1,prints_Insln_rcpt_S1	-	no_errors	IRS4	HGNC	ENSG00000133124				144	0	0	119	35	22.7273
HTR2C	0	genome.wustl.edu	37	X	114141351	114141351	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	X	114141351	114141351	C	T	SNP	HTR2C	ENST00000371950	human	ensembl	74_37	+1	known	missense	c.655	p.R219W	0.002	NULL	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_5HT2C_rcpt,prints_GPCR_Rhodpsn	-	no_errors	HTR2C	HGNC	ENSG00000147246				577	0	0	382	155	28.8641
IL13RA1	0	genome.wustl.edu	37	X	117895240	117895240	+	Silent	SNP	T	T	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	X	117895240	117895240	T	C	SNP	IL13RA1	ENST00000371666	human	ensembl	74_37	+1	known	silent	c.816	p.H272	0.000	superfamily_Fibronectin_type3	pfam_IL-6_rcpt_alpha-bd,superfamily_Fibronectin_type3	-	no_errors	IL13RA1	HGNC	ENSG00000131724				255	0	0	233	13	5.28455
CXorf56	0	genome.wustl.edu	37	X	118676477	118676477	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	X	118676477	118676477	C	A	SNP	CXorf56	ENST00000371594	human	ensembl	74_37	-1	known	missense	c.504	p.E168D	1.000	NULL	NULL	-	no_errors	CXorf56	HGNC	ENSG00000018610				155	0	0	122	30	19.7368
MCTS1	0	genome.wustl.edu	37	X	119742168	119742168	+	Silent	SNP	T	T	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	X	119742168	119742168	T	G	SNP	MCTS1	ENST00000371315	human	ensembl	74_37	+1	known	silent	c.354	p.T118	0.520	pfam_PUA,superfamily_PUA-like_domain,smart_PUA,pirsf_Transl_RNA-bd_prd,pfscan_PUA,tigrfam_Uncharacterised_CHP00451	pfam_PUA,superfamily_PUA-like_domain,smart_PUA,pirsf_Transl_RNA-bd_prd,pfscan_PUA,tigrfam_Uncharacterised_CHP00451	-	no_errors	MCTS1	HGNC	ENSG00000232119				149	0	0	125	9	6.71642
GLUD2	0	genome.wustl.edu	37	X	120181688	120181688	+	Silent	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	X	120181688	120181688	G	A	SNP	GLUD2	ENST00000328078	human	ensembl	74_37	+1	known	silent	c.150	p.R50	0.892	NULL	pfam_Glu/Leu/Phe/Val_DH_C,pfam_Glu/Leu/Phe/Val_DH_dimer_dom,smart_Glu/Leu/Phe/Val_DH_C,prints_Glu/Leu/Phe/Val_DH	-	no_errors	GLUD2	HGNC	ENSG00000182890				74	0	0	51	21	29.1667
TENM1	0	genome.wustl.edu	37	X	123517968	123517968	+	Silent	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	X	123517968	123517968	C	T	SNP	TENM1	ENST00000422452	human	ensembl	74_37	-1	known	silent	c.6813	p.G2271	0.930	NULL	pfam_Ten_N,pfam_EGF_extracell,superfamily_CarboxyPept-like_regulatory,smart_EG-like_dom,pfscan_EG-like_dom,tigrfam_YD	-	no_errors	TENM1	HGNC	ENSG00000009694				219	0	0	166	61	26.8722
SMARCA1	0	genome.wustl.edu	37	X	128599865	128599865	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	X	128599865	128599865	T	C	SNP	SMARCA1	ENST00000371122	human	ensembl	74_37	-1	known	missense	c.2773	p.R925G	1.000	pfam_SLIDE,superfamily_Homeodomain-like	pfam_SNF2_N,pfam_SLIDE,pfam_ISWI_HAND-dom,pfam_Helicase_C,pfam_Helicase/UvrB_dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,superfamily_Homeodomain-like,superfamily_ISWI_HAND-dom,smart_Helicase_ATP-bd,smart_Helicase_C,smart_SANT/Myb,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	SMARCA1	HGNC	ENSG00000102038				191	0	0	163	60	26.9058
SMARCA1	0	genome.wustl.edu	37	X	128621096	128621096	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	X	128621096	128621096	G	A	SNP	SMARCA1	ENST00000371122	human	ensembl	74_37	-1	known	missense	c.2116	p.R706C	0.999	NULL	pfam_SNF2_N,pfam_SLIDE,pfam_ISWI_HAND-dom,pfam_Helicase_C,pfam_Helicase/UvrB_dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,superfamily_Homeodomain-like,superfamily_ISWI_HAND-dom,smart_Helicase_ATP-bd,smart_Helicase_C,smart_SANT/Myb,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	SMARCA1	HGNC	ENSG00000102038				94	0	0	63	21	25
BCORL1	0	genome.wustl.edu	37	X	129148194	129148194	+	Silent	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	X	129148194	129148194	G	A	SNP	BCORL1	ENST00000303743	human	ensembl	74_37	+1	known	silent	c.1446	p.P482	0.944	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	BCORL1	HGNC	ENSG00000085185				275	0	0	193	66	25.4826
BCORL1	0	genome.wustl.edu	37	X	129149510	129149510	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	X	129149510	129149510	C	A	SNP	BCORL1	ENST00000303743	human	ensembl	74_37	+1	known	missense	c.2762	p.P921H	0.680	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	BCORL1	HGNC	ENSG00000085185				102	0	0	79	33	29.4643
IGSF1	0	genome.wustl.edu	37	X	130410036	130410036	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	X	130410036	130410036	A	T	SNP	IGSF1	ENST00000370903	human	ensembl	74_37	-1	known	missense	c.2810	p.V937D	0.001	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	IGSF1	HGNC	ENSG00000147255				110	0	0	74	25	25.2525
FAM122C	0	genome.wustl.edu	37	X	133941656	133941656	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	X	133941656	133941656	T	C	SNP	FAM122C	ENST00000370784	human	ensembl	74_37	+1	known	missense	c.28	p.F10L	0.000	NULL	NULL	-	no_errors	FAM122C	HGNC	ENSG00000156500				243	0	0	250	24	8.75912
CXorf48	0	genome.wustl.edu	37	X	134303672	134303672	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	X	134303672	134303672	A	G	SNP	CXorf48	ENST00000276241	human	ensembl	74_37	-1	known	missense	c.125	p.V42A	0.000	superfamily_NA-bd_OB-fold	superfamily_NA-bd_OB-fold	-	no_errors	CXorf48	HGNC	ENSG00000169551				76	0	0	84	11	11.5789
ZNF449	0	genome.wustl.edu	37	X	134494771	134494771	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	X	134494771	134494771	A	C	SNP	ZNF449	ENST00000339249	human	ensembl	74_37	+1	known	missense	c.1327	p.S443R	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF449	HGNC	ENSG00000173275				187	0	0	175	95	35.1852
MAP7D3	0	genome.wustl.edu	37	X	135313712	135313712	+	Silent	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	X	135313712	135313712	G	A	SNP	MAP7D3	ENST00000370663	human	ensembl	74_37	-1	known	silent	c.1350	p.D450	0.000	NULL	pfam_MAP7	-	no_errors	MAP7D3	HGNC	ENSG00000129680				207	0	0	149	107	41.7969
ENSG00000232611	0	genome.wustl.edu	37	X	135929575	135929575	+	RNA	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	X	135929575	135929575	G	A	SNP	ENSG00000232611	ENST00000435597	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.127	-	-	-	no_errors	RP11-1114A5.4	Clone_based_vega_gene	ENSG00000232611				13	0	0	5	7	58.3333
MCF2	0	genome.wustl.edu	37	X	138698521	138698521	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	X	138698521	138698521	C	T	SNP	MCF2	ENST00000370578	human	ensembl	74_37	-1	known	missense	c.1546	p.E516K	1.000	NULL	pfam_DH-domain,superfamily_DH-domain,superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,smart_Spectrin/alpha-actinin,smart_DH-domain,smart_Pleckstrin_homology,pfscan_CRAL-TRIO_dom,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	MCF2	HGNC	ENSG00000101977				95	0	0	92	13	12.381
SLITRK2	0	genome.wustl.edu	37	X	144905424	144905424	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	X	144905424	144905424	C	T	SNP	SLITRK2	ENST00000370490	human	ensembl	74_37	+1	known	missense	c.1481	p.T494M	0.997	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	SLITRK2	HGNC	ENSG00000185985				274	0	0	251	63	20.0637
SLITRK2	0	genome.wustl.edu	37	X	144905693	144905693	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	X	144905693	144905693	T	A	SNP	SLITRK2	ENST00000370490	human	ensembl	74_37	+1	known	missense	c.1750	p.L584M	0.306	NULL	pfam_Leu-rich_rpt,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	SLITRK2	HGNC	ENSG00000185985				106	0	0	89	18	16.8224
MIR892A	0	genome.wustl.edu	37	X	145078239	145078239	+	RNA	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	X	145078239	145078239	C	T	SNP	MIR892A	ENST00000401124	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	MIR892A	HGNC	ENSG00000215943				238	0	0	150	108	41.8605
MAGEA8	0	genome.wustl.edu	37	X	149013371	149013371	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	X	149013371	149013371	C	T	SNP	MAGEA8	ENST00000286482	human	ensembl	74_37	+1	known	missense	c.325	p.R109W	0.001	NULL	pfam_MAGE,pfam_Melanoma_ass_antigen_N,pfscan_MAGE	-	no_errors	MAGEA8	HGNC	ENSG00000156009				275	0	0	318	17	5.07463
MTMR1	0	genome.wustl.edu	37	X	149931153	149931153	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	X	149931153	149931153	G	A	SNP	MTMR1	ENST00000445323	human	ensembl	74_37	+1	known	missense	c.1973	p.R658Q	0.998	NULL	pfam_Myotubularin-like_Pase_dom,pfam_GRAM,smart_GRAM,smart_Tyr_Pase_cat,pfscan_Tyr/Dual-sp_Pase	-	no_errors	MTMR1	HGNC	ENSG00000063601				104	0	0	100	18	15.2542
PASD1	0	genome.wustl.edu	37	X	150839574	150839574	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	X	150839574	150839574	A	C	SNP	PASD1	ENST00000370357	human	ensembl	74_37	+1	known	missense	c.1136	p.K379T	0.000	NULL	superfamily_PAS,smart_PAS,pfscan_PAS	-	no_errors	PASD1	HGNC	ENSG00000166049				365	0	0	218	171	43.9589
NSDHL	0	genome.wustl.edu	37	X	152031181	152031181	+	Silent	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	X	152031181	152031181	C	T	SNP	NSDHL	ENST00000370274	human	ensembl	74_37	+1	known	silent	c.456	p.G152	0.000	pfam_3Beta_OHSteriod_DH/Estase,pfam_Epimerase_deHydtase,pfam_dTDP_dehydrorham_reduct,pfam_Male_sterile_NAD-bd	pfam_3Beta_OHSteriod_DH/Estase,pfam_Epimerase_deHydtase,pfam_dTDP_dehydrorham_reduct,pfam_Male_sterile_NAD-bd,pfam_Polysac_CapD-like,pfam_NmrA	-	no_errors	NSDHL	HGNC	ENSG00000147383				167	0	0	200	52	20.6349
ZNF275	0	genome.wustl.edu	37	X	152613218	152613218	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	X	152613218	152613218	C	T	SNP	ZNF275	ENST00000440091	human	ensembl	74_37	+1	known	missense	c.1165	p.R389C	0.895	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF275	HGNC	ENSG00000063587				22	0	0	26	5	16.129
SRPK3	0	genome.wustl.edu	37	X	153050913	153050913	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	X	153050913	153050913	T	C	SNP	SRPK3	ENST00000370101	human	ensembl	74_37	+1	known	missense	c.1642	p.Y548H	1.000	pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_dom	-	no_errors	SRPK3	HGNC	ENSG00000184343				219	2	0.904977	229	40	14.8699
ARHGAP4	0	genome.wustl.edu	37	X	153184643	153184643	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	X	153184643	153184643	T	C	SNP	ARHGAP4	ENST00000350060	human	ensembl	74_37	-1	known	missense	c.776	p.N259S	1.000	NULL	pfam_RhoGAP_dom,pfam_FCH_dom,pfam_SH3_domain,pfam_SH3_2,superfamily_Rho_GTPase_activation_prot,superfamily_SH3_domain,smart_FCH_dom,smart_RhoGAP_dom,smart_SH3_domain,pfscan_FCH_dom,pfscan_SH3_domain,pfscan_RhoGAP_dom	-	no_errors	ARHGAP4	HGNC	ENSG00000089820				163	0	0	182	33	15.3488
HCFC1	0	genome.wustl.edu	37	X	153219884	153219884	+	Silent	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	X	153219884	153219884	G	A	SNP	HCFC1	ENST00000310441	human	ensembl	74_37	-1	known	silent	c.3966	p.C1322	0.739	NULL	pfam_Kelch_2,pfam_Kelch_1,superfamily_Fibronectin_type3,smart_Fibronectin_type3	-	no_errors	HCFC1	HGNC	ENSG00000172534				295	1	0.337838	226	166	42.3469
IRAK1	0	genome.wustl.edu	37	X	153278860	153278860	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	X	153278860	153278860	G	A	SNP	IRAK1	ENST00000369980	human	ensembl	74_37	-1	known	nonsense	c.1564	p.Q522*	1.000	superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Death_domain,superfamily_Kinase-like_dom,superfamily_DEATH-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	IRAK1	HGNC	ENSG00000184216				60	0	0	46	15	24.5902
TKTL1	0	genome.wustl.edu	37	X	153524229	153524229	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	X	153524229	153524229	C	T	SNP	TKTL1	ENST00000369915	human	ensembl	74_37	+1	known	missense	c.17	p.A6V	0.000	NULL	pfam_Transketolase_N,pfam_Transketolase-like_Pyr-bd,pfam_Transketolase_C,pfam_DH_E1,superfamily_Transketo_C/Pyr-ferredox_oxred,smart_Transketolase-like_Pyr-bd	-	no_errors	TKTL1	HGNC	ENSG00000007350				127	0	0	125	32	20.3822
ATP6AP1	0	genome.wustl.edu	37	X	153662013	153662013	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	X	153662013	153662013	A	G	SNP	ATP6AP1	ENST00000369762	human	ensembl	74_37	+1	known	missense	c.631	p.K211E	0.793	pfam_BIG/ATPase_V1_suS1	pfam_BIG/ATPase_V1_suS1	-	no_errors	ATP6AP1	HGNC	ENSG00000071553				95	0	0	88	56	38.8889
NHS	0	genome.wustl.edu	37	X	17744772	17744772	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	X	17744772	17744772	C	T	SNP	NHS	ENST00000380060	human	ensembl	74_37	+1	known	missense	c.2483	p.P828L	1.000	NULL	NULL	-	no_errors	NHS	HGNC	ENSG00000188158				238	0	0	159	36	18.4615
NHS	0	genome.wustl.edu	37	X	17745811	17745811	+	Silent	SNP	T	T	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	X	17745811	17745811	T	C	SNP	NHS	ENST00000380060	human	ensembl	74_37	+1	known	silent	c.3522	p.T1174	0.503	NULL	NULL	-	no_errors	NHS	HGNC	ENSG00000188158				237	0	0	162	68	29.5652
PPEF1	0	genome.wustl.edu	37	X	18725801	18725801	+	RNA	SNP	C	C	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	X	18725801	18725801	C	A	SNP	PPEF1	ENST00000471570	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.272	-	-	-	no_errors	PPEF1	HGNC	ENSG00000086717				26	0	0	21	11	34.375
SH3KBP1	0	genome.wustl.edu	37	X	19587236	19587236	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	X	19587236	19587236	G	A	SNP	SH3KBP1	ENST00000397821	human	ensembl	74_37	-1	known	missense	c.1369	p.R457C	1.000	NULL	pfam_SH3_2,pfam_SH3_domain,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain,prints_p67phox,prints_SH3_domain,prints_Spectrin_alpha_SH3	-	no_errors	SH3KBP1	HGNC	ENSG00000147010				193	1	0.515464	146	46	23.9583
SH3KBP1	0	genome.wustl.edu	37	X	19606847	19606847	+	Silent	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	X	19606847	19606847	C	T	SNP	SH3KBP1	ENST00000397821	human	ensembl	74_37	-1	known	silent	c.1212	p.R404	0.968	NULL	pfam_SH3_2,pfam_SH3_domain,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain,prints_p67phox,prints_SH3_domain,prints_Spectrin_alpha_SH3	-	no_errors	SH3KBP1	HGNC	ENSG00000147010				406	0	0	253	86	25.3687
MAP7D2	0	genome.wustl.edu	37	X	20082870	20082870	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	X	20082870	20082870	G	A	SNP	MAP7D2	ENST00000379643	human	ensembl	74_37	-1	known	nonsense	c.184	p.R62*	1.000	NULL	pfam_MAP7	-	no_errors	MAP7D2	HGNC	ENSG00000184368				136	0	0	86	41	32.2835
CNKSR2	0	genome.wustl.edu	37	X	21670629	21670629	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	X	21670629	21670629	C	T	SNP	CNKSR2	ENST00000379510	human	ensembl	74_37	+1	known	missense	c.3095	p.T1032M	1.000	NULL	pfam_CNKSR2,pfam_CRIC_domain_Chordata,pfam_SAM_type1,pfam_Pleckstrin_homology,pfam_SAM_2,pfam_PDZ,superfamily_SAM/pointed,superfamily_PDZ,smart_SAM,smart_PDZ,smart_Pleckstrin_homology,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_SAM	-	no_errors	CNKSR2	HGNC	ENSG00000149970				127	0	0	94	41	30.3704
ZNF645	0	genome.wustl.edu	37	X	22291373	22291373	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	X	22291373	22291373	G	A	SNP	ZNF645	ENST00000323684	human	ensembl	74_37	+1	known	missense	c.265	p.G89R	0.002	pfscan_Znf_RING	pfscan_Znf_RING,pfscan_Znf_C2H2	-	no_errors	ZNF645	HGNC	ENSG00000175809				132	0	0	74	25	25.2525
ACOT9	0	genome.wustl.edu	37	X	23748967	23748967	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	X	23748967	23748967	G	A	SNP	ACOT9	ENST00000379303	human	ensembl	74_37	-1	known	nonsense	c.328	p.R110*	1.000	NULL	pfam_Thioestr_supf	-	no_errors	ACOT9	HGNC	ENSG00000123130				97	0	0	72	29	28.7129
DCAF8L2	0	genome.wustl.edu	37	X	27765108	27765108	+	Silent	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	X	27765108	27765108	G	A	SNP	DCAF8L2	ENST00000451261	human	ensembl	74_37	+1	known	silent	c.96	p.A32	0.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DCAF8L2	HGNC	ENSG00000189186				18	0	0	16	3	15.7895
TAB3	0	genome.wustl.edu	37	X	30870905	30870905	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	X	30870905	30870905	G	A	SNP	TAB3	ENST00000288422	human	ensembl	74_37	-1	known	missense	c.1700	p.A567V	0.939	NULL	pfam_CUE,pfam_Znf_RanBP2,superfamily_UBA-like,smart_CUE,smart_Znf_RanBP2,pfscan_CUE,pfscan_Znf_RanBP2	-	no_errors	TAB3	HGNC	ENSG00000157625				89	0	0	76	31	28.972
DMD	0	genome.wustl.edu	37	X	31496309	31496309	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	X	31496309	31496309	G	A	SNP	DMD	ENST00000357033	human	ensembl	74_37	-1	known	missense	c.8851	p.R2951C	0.916	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin,pirsf_Dystrophin/utrophin	pfam_Spectrin_repeat,pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_CH-domain,pfam_Znf_ZZ,pfam_WW_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_WW_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_WW_dom,smart_Znf_ZZ,pirsf_Dystrophin/utrophin,pfscan_CH-domain,pfscan_WW_dom,pfscan_Znf_ZZ	-	no_errors	DMD	HGNC	ENSG00000198947				55	0	0	38	10	20.8333
MXRA5	0	genome.wustl.edu	37	X	3235646	3235646	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	X	3235646	3235646	C	T	SNP	MXRA5	ENST00000217939	human	ensembl	74_37	-1	known	missense	c.6076	p.V2026M	0.998	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	MXRA5	HGNC	ENSG00000101825				32	0	0	32	7	17.9487
FAM47B	0	genome.wustl.edu	37	X	34961163	34961163	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	X	34961163	34961163	G	A	SNP	FAM47B	ENST00000329357	human	ensembl	74_37	+1	known	missense	c.215	p.R72H	0.001	NULL	NULL	-	no_errors	FAM47B	HGNC	ENSG00000189132				110	0	0	85	7	7.6087
FAM47B	0	genome.wustl.edu	37	X	34961839	34961839	+	Silent	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	X	34961839	34961839	G	A	SNP	FAM47B	ENST00000329357	human	ensembl	74_37	+1	known	silent	c.891	p.P297	0.985	NULL	NULL	-	no_errors	FAM47B	HGNC	ENSG00000189132				146	0	0	81	34	29.5652
LANCL3	0	genome.wustl.edu	37	X	37526606	37526606	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	X	37526606	37526606	T	C	SNP	LANCL3	ENST00000378619	human	ensembl	74_37	+1	known	missense	c.967	p.C323R	1.000	pfam_LANC-like,superfamily_6-hairpin_glycosidase-like,prints_LanC-like_prot_euk	pfam_LANC-like,superfamily_6-hairpin_glycosidase-like,prints_LANC-like,prints_LanC-like_prot_euk	-	no_errors	LANCL3	HGNC	ENSG00000147036				79	0	0	78	22	22
TSPAN7	0	genome.wustl.edu	37	X	38535094	38535094	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	X	38535094	38535094	G	A	SNP	TSPAN7	ENST00000422612	human	ensembl	74_37	+1	known	missense	c.655	p.A219T	0.968	pfam_Tetraspanin/Peripherin,superfamily_Tetraspanin_EC2	pfam_Tetraspanin/Peripherin,superfamily_Tetraspanin_EC2,prints_Tetraspanin	-	no_errors	TSPAN7	HGNC	ENSG00000156298				67	0	0	42	14	25
RBM10	0	genome.wustl.edu	37	X	47045755	47045755	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	X	47045755	47045755	G	A	SNP	RBM10	ENST00000377604	human	ensembl	74_37	+1	known	missense	c.2636	p.R879H	1.000	pfam_G_patch_dom,smart_G_patch_dom,pfscan_G_patch_dom	pfam_G_patch_dom,pfam_RRM_dom,pfam_Znf_RanBP2,smart_RRM_dom,smart_Znf_RanBP2,smart_G_patch_dom,pfscan_Znf_RanBP2,pfscan_Znf_C2H2,pfscan_G_patch_dom,pfscan_RRM_dom	-	no_errors	RBM10	HGNC	ENSG00000182872				10	0	0	10	4	28.5714
ARAF	0	genome.wustl.edu	37	X	47430411	47430411	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	X	47430411	47430411	G	T	SNP	ARAF	ENST00000377045	human	ensembl	74_37	+1	known	missense	c.1686	p.Q562H	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Raf-like_ras-bd,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_Kinase-like_dom,smart_Raf-like_ras-bd,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Raf-like_ras-bd,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_DAG/PE-bd	-	no_errors	ARAF	HGNC	ENSG00000078061				21	0	0	20	7	25.9259
ZNF81	0	genome.wustl.edu	37	X	47774350	47774350	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	X	47774350	47774350	A	G	SNP	ZNF81	ENST00000338637	human	ensembl	74_37	+1	known	missense	c.305	p.Q102R	0.005	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF81	HGNC	ENSG00000197779				25	0	0	20	9	31.0345
ZNF81	0	genome.wustl.edu	37	X	47774500	47774500	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	X	47774500	47774500	G	A	SNP	ZNF81	ENST00000338637	human	ensembl	74_37	+1	known	missense	c.455	p.R152H	0.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF81	HGNC	ENSG00000197779				39	0	0	29	12	29.2683
ZNF630	0	genome.wustl.edu	37	X	47917969	47917969	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	X	47917969	47917969	T	C	SNP	ZNF630	ENST00000409324	human	ensembl	74_37	-1	known	missense	c.1862	p.H621R	0.782	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF630	HGNC	ENSG00000221994				68	0	0	51	10	16.3934
FTSJ1	0	genome.wustl.edu	37	X	48336803	48336803	+	RNA	SNP	A	A	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	X	48336803	48336803	A	G	SNP	FTSJ1	ENST00000487353	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	FTSJ1	HGNC	ENSG00000068438				33	0	0	17	13	43.3333
MAGIX	0	genome.wustl.edu	37	X	49019249	49019249	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	X	49019249	49019249	G	A	SNP	MAGIX	ENST00000412696	human	ensembl	74_37	+1	known	missense	c.22	p.A8T	0.010	NULL	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	MAGIX	HGNC	ENSG00000017621				17	0	0	7	4	36.3636
CLCN5	0	genome.wustl.edu	37	X	49837186	49837186	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	X	49837186	49837186	A	G	SNP	CLCN5	ENST00000376088	human	ensembl	74_37	+1	known	missense	c.358	p.S120G	1.000	superfamily_Cl-channel_core,prints_Cl_channel-5	pfam_Cl-channel_volt-gated,pfam_CBS_dom,superfamily_Cl-channel_core,smart_CBS_dom,prints_Cl-channel_volt-gated,prints_Cl_channel-5	-	no_errors	CLCN5	HGNC	ENSG00000171365				136	0	0	106	32	23.1884
MAGED1	0	genome.wustl.edu	37	X	51637833	51637833	+	Silent	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	X	51637833	51637833	C	T	SNP	MAGED1	ENST00000375695	human	ensembl	74_37	+1	known	silent	c.156	p.R52	0.000	NULL	pfam_MAGE,pfscan_MAGE	-	no_errors	MAGED1	HGNC	ENSG00000179222				84	0	0	55	21	27.6316
HUWE1	0	genome.wustl.edu	37	X	53674333	53674333	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	X	53674333	53674333	C	T	SNP	HUWE1	ENST00000262854	human	ensembl	74_37	-1	known	missense	c.329	p.R110Q	1.000	pfam_E3_Ub_ligase_DUF908	pfam_E3_Ub_ligase_DUF913,pfam_HECT,pfam_E3_Ub_ligase_DUF908,pfam_WWE-dom,pfam_UBA/Ts_N,superfamily_HECT,superfamily_UBA-like,superfamily_ARM-type_fold,smart_UBA/transl_elong_EF1B_N_euk,smart_HECT,pfscan_HECT,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_WWE-dom	-	no_errors	HUWE1	HGNC	ENSG00000086758				71	0	0	52	15	22.3881
TSR2	0	genome.wustl.edu	37	X	54470968	54470968	+	Silent	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	X	54470968	54470968	C	T	SNP	TSR2	ENST00000375151	human	ensembl	74_37	+1	known	silent	c.561	p.V187	1.000	NULL	pfam_Pre-rRNA_process_TSR2	-	no_errors	TSR2	HGNC	ENSG00000158526				58	0	0	54	14	20.5882
GNL3L	0	genome.wustl.edu	37	X	54577458	54577458	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	X	54577458	54577458	G	A	SNP	GNL3L	ENST00000336470	human	ensembl	74_37	+1	known	missense	c.838	p.V280M	1.000	pfam_GTP_binding_domain,pfam_Fe2_transport_prot_B_N,superfamily_P-loop_NTPase	pfam_GTP_binding_domain,pfam_Fe2_transport_prot_B_N,superfamily_P-loop_NTPase,prints_GTP_binding_domain	-	no_errors	GNL3L	HGNC	ENSG00000130119				34	0	0	21	9	30
MAGED2	0	genome.wustl.edu	37	X	54838668	54838668	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	X	54838668	54838668	G	A	SNP	MAGED2	ENST00000218439	human	ensembl	74_37	+1	known	missense	c.1069	p.A357T	1.000	pfam_MAGE,pfscan_MAGE	pfam_MAGE,pfscan_MAGE	-	no_errors	MAGED2	HGNC	ENSG00000102316				30	0	0	28	6	17.6471
ALAS2	0	genome.wustl.edu	37	X	55051231	55051231	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	X	55051231	55051231	G	A	SNP	ALAS2	ENST00000330807	human	ensembl	74_37	-1	known	missense	c.224	p.S75L	0.997	pfam_5aminolev_synth_preseq	pfam_Aminotransferase_I/II,pfam_5aminolev_synth_preseq,pfam_Aminotrans_V/Cys_dSase,pfam_Cys/Met-Metab_PyrdxlP-dep_enz,superfamily_PyrdxlP-dep_Trfase,tigrfam_4pyrrol_synth_NH2levulA_synth	-	no_errors	ALAS2	HGNC	ENSG00000158578				151	0	0	92	46	33.3333
RRAGB	0	genome.wustl.edu	37	X	55757835	55757835	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	X	55757835	55757835	G	A	SNP	RRAGB	ENST00000262850	human	ensembl	74_37	+1	known	missense	c.416	p.R139Q	0.999	pfam_Gtr1_RagA,pfam_Small_GTPase,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase	pfam_Gtr1_RagA,pfam_Small_GTPase,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase	-	no_errors	RRAGB	HGNC	ENSG00000083750				29	0	0	42	16	27.5862
FAAH2	0	genome.wustl.edu	37	X	57474979	57474979	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	X	57474979	57474979	G	T	SNP	FAAH2	ENST00000374900	human	ensembl	74_37	+1	known	missense	c.1251	p.K417N	0.007	pfam_Amidase,superfamily_Amidase_dom	pfam_Amidase,superfamily_Amidase_dom	-	no_errors	FAAH2	HGNC	ENSG00000165591				78	0	0	55	18	24.6575
AMER1	0	genome.wustl.edu	37	X	63410310	63410310	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	X	63410310	63410310	G	T	SNP	AMER1	ENST00000330258	human	ensembl	74_37	-1	known	missense	c.2857	p.P953T	0.995	NULL	pfam_Uncharacterised_FAM123	-	no_errors	AMER1	HGNC	ENSG00000184675				67	0	0	55	16	22.5352
ITGB1BP2	0	genome.wustl.edu	37	X	70523138	70523138	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	X	70523138	70523138	C	T	SNP	ITGB1BP2	ENST00000373829	human	ensembl	74_37	+1	known	missense	c.344	p.P115L	1.000	NULL	pfam_CHORD,pfam_CS_dom,superfamily_HSP20-like_chaperone,pfscan_CS_dom	-	no_errors	ITGB1BP2	HGNC	ENSG00000147166				58	0	0	29	14	32.5581
KIAA2022	0	genome.wustl.edu	37	X	73961039	73961039	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	X	73961039	73961039	G	A	SNP	KIAA2022	ENST00000055682	human	ensembl	74_37	-1	known	missense	c.3353	p.T1118I	0.171	NULL	NULL	-	no_errors	KIAA2022	HGNC	ENSG00000050030				126	0	0	94	23	19.6581
BRWD3	0	genome.wustl.edu	37	X	79932589	79932589	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	X	79932589	79932589	C	T	SNP	BRWD3	ENST00000373275	human	ensembl	74_37	-1	known	missense	c.4928	p.S1643N	1.000	NULL	pfam_WD40_repeat,pfam_Bromodomain,superfamily_Quino_amine_DH_bsu,superfamily_Bromodomain,smart_WD40_repeat,smart_Bromodomain,pfscan_Bromodomain,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Bromodomain	-	no_errors	BRWD3	HGNC	ENSG00000165288				488	0	0	379	74	16.3355
SATL1	0	genome.wustl.edu	37	X	84363029	84363029	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	X	84363029	84363029	T	A	SNP	SATL1	ENST00000509231	human	ensembl	74_37	-1	known	missense	c.946	p.M316L	0.001	NULL	superfamily_Acyl_CoA_acyltransferase	-	no_errors	SATL1	HGNC	ENSG00000184788				108	0	0	98	6	5.76923
SYCP1	0	genome.wustl.edu	37	1	115537601	115537601	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	1	115537601	115537601	A	-	DEL	SYCP1	ENST00000369518	human	ensembl	74_37	+1	known	frame_shift_del	c.2892	p.K967fs	1.000	NULL	pfam_SCP-1	-	no_errors	SYCP1	HGNC	ENSG00000198765				131	0	0	122	20	14.0845
ITGA10	0	genome.wustl.edu	37	1	145532307	145532307	+	RNA	DEL	G	G	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	1	145532307	145532307	G	-	DEL	ITGA10	ENST00000481236	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ITGA10	HGNC	ENSG00000143127				42	0	0	24	9	27.2727
VPS45	0	genome.wustl.edu	37	1	150082564	150082564	+	RNA	DEL	T	T	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	1	150082564	150082564	T	-	DEL	VPS45	ENST00000484306	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	VPS45	HGNC	ENSG00000136631				52	0	0	46	10	17.8571
GABPB2	0	genome.wustl.edu	37	1	151076042	151076042	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	1	151076042	151076042	C	-	DEL	GABPB2	ENST00000368918	human	ensembl	74_37	+1	known	frame_shift_del	c.627	p.H211fs	0.997	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	GABPB2	HGNC	ENSG00000143458				115	0	0	91	25	21.5517
LYSMD1	0	genome.wustl.edu	37	1	151134433	151134433	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	1	151134433	151134433	T	-	DEL	LYSMD1	ENST00000368908	human	ensembl	74_37	-1	known	frame_shift_del	c.324	p.V109fs	0.003	NULL	pfam_LysM_dom,smart_LysM_dom	-	no_errors	LYSMD1	HGNC	ENSG00000163155				113	0	0	88	26	22.807
UBE2Q1	0	genome.wustl.edu	37	1	154524457	154524458	+	Splice_Site	INS	-	-	GA			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	1	154524457	154524458	-	GA	INS	UBE2Q1	ENST00000292211	human	ensembl	74_37	-1	known	splice_site_ins	c.967-3_967-2	e9-2	1.000:0.187	-	-	-	no_errors	UBE2Q1	HGNC	ENSG00000160714				69	0	0	63	13	17.1053
GON4L	0	genome.wustl.edu	37	1	155785777	155785777	+	RNA	DEL	A	A	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	1	155785777	155785777	A	-	DEL	GON4L	ENST00000471341	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	GON4L	HGNC	ENSG00000116580				8	0	0	6	5	45.4545
LAMTOR2	0	genome.wustl.edu	37	1	156028210	156028210	+	RNA	DEL	G	G	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	1	156028210	156028210	G	-	DEL	LAMTOR2	ENST00000463371	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	LAMTOR2	HGNC	ENSG00000116586				67	0	0	51	22	30.137
HDGF	0	genome.wustl.edu	37	1	156713116	156713118	+	RNA	DEL	AGT	AGT	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	AGT	AGT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	1	156713116	156713118	AGT	-	DEL	HDGF	ENST00000465180	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.015:0.007:0.010	-	-	-	no_errors	HDGF	HGNC	ENSG00000143321				46	0	0	20	15	42.8571
OR10Z1	0	genome.wustl.edu	37	1	158576757	158576757	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	1	158576757	158576757	T	-	DEL	OR10Z1	ENST00000361284	human	ensembl	74_37	+1	known	frame_shift_del	c.529	p.C179fs	0.950	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR10Z1	HGNC	ENSG00000198967				207	0	0	138	40	22.4719
AIM2	0	genome.wustl.edu	37	1	159033322	159033322	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	1	159033322	159033322	T	-	DEL	AIM2	ENST00000368130	human	ensembl	74_37	-1	known	frame_shift_del	c.959	p.N320fs	0.000	superfamily_NA-bd_OB-fold,pfscan_HIN200/IF120x	pfam_HIN200/IF120x,pfam_DAPIN,superfamily_DEATH-like_dom,superfamily_NA-bd_OB-fold,pfscan_DAPIN,pfscan_HIN200/IF120x	-	no_errors	AIM2	HGNC	ENSG00000163568				321	0	0	267	75	21.9298
SPEN	0	genome.wustl.edu	37	1	16255783	16255783	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	1	16255783	16255783	A	-	DEL	SPEN	ENST00000375759	human	ensembl	74_37	+1	known	frame_shift_del	c.3048	p.K1018fs	0.449	NULL	pfam_RRM_dom,pfam_SPOC_C,superfamily_SPOC_like_C_dom,smart_RRM_dom,pfscan_SPOC_met,pfscan_RRM_dom	-	no_errors	SPEN	HGNC	ENSG00000065526				106	0	0	63	18	22.2222
CLCNKB	0	genome.wustl.edu	37	1	16377465	16377465	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	1	16377465	16377465	C	-	DEL	CLCNKB	ENST00000375679	human	ensembl	74_37	+1	known	frame_shift_del	c.1149	p.Q385fs	0.997	pfam_Cl-channel_volt-gated,superfamily_Cl-channel_core	pfam_Cl-channel_volt-gated,pfam_CBS_dom,superfamily_Cl-channel_core,smart_CBS_dom,prints_Cl-channel_volt-gated,prints_Cl_channel-K	-	no_errors	CLCNKB	HGNC	ENSG00000184908				86	0	0	77	13	14.4444
MPZL1	0	genome.wustl.edu	37	1	167741719	167741720	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	1	167741719	167741720	-	A	INS	MPZL1	ENST00000359523	human	ensembl	74_37	+1	known	frame_shift_ins	c.466_467	p.E158fs	0.998:1.000	prints_Myelin_P0	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like_dom,prints_Myelin_P0	-	no_errors	MPZL1	HGNC	ENSG00000197965				130	0	0	78	22	22
RGL1	0	genome.wustl.edu	37	1	183881395	183881395	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	1	183881395	183881395	A	-	DEL	RGL1	ENST00000304685	human	ensembl	74_37	+1	known	frame_shift_del	c.1847	p.K618fs	0.999	NULL	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,pfam_Ras-assoc,superfamily_Ras_GEF_dom,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,smart_Ras-assoc,pfscan_Ras-assoc,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RGL1	HGNC	ENSG00000143344				41	0	0	39	13	25
RGS21	0	genome.wustl.edu	37	1	192335194	192335195	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	1	192335194	192335195	-	A	INS	RGS21	ENST00000417209	human	ensembl	74_37	+1	known	frame_shift_ins	c.399_400	p.L135fs	0.999:1.000	pfam_RGS_dom,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal_superfam,pfscan_Regulat_G_prot_signal_superfam	pfam_RGS_dom,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal_superfam,pfscan_Regulat_G_prot_signal_superfam,prints_RGS_dom	-	no_errors	RGS21	HGNC	ENSG00000253148				112	0	0	100	15	13.0435
RGS2	0	genome.wustl.edu	37	1	192780194	192780194	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	1	192780194	192780194	A	-	DEL	RGS2	ENST00000235382	human	ensembl	74_37	+1	known	frame_shift_del	c.358	p.T122fs	1.000	pfam_RGS_dom,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal_superfam,pfscan_Regulat_G_prot_signal_superfam	pfam_RGS_dom,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal_superfam,pfscan_Regulat_G_prot_signal_superfam,prints_RGS_dom	-	no_errors	RGS2	HGNC	ENSG00000116741				253	0	0	205	50	19.6078
NFASC	0	genome.wustl.edu	37	1	204924033	204924033	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	1	204924033	204924033	C	-	DEL	NFASC	ENST00000367172	human	ensembl	74_37	+1	known	frame_shift_del	c.489	p.P165fs	1.000	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	NFASC	HGNC	ENSG00000163531				457	0	0	361	65	15.2582
RPS6KC1	0	genome.wustl.edu	37	1	213277903	213277903	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	1	213277903	213277903	T	-	DEL	RPS6KC1	ENST00000366960	human	ensembl	74_37	+1	known	frame_shift_del	c.370	p.F125fs	1.000	pfam_Phox,superfamily_Phox,smart_Phox,pfscan_Phox	pfam_Prot_kinase_dom,pfam_MIT,pfam_Phox,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Phox,smart_Phox,smart_MIT,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Phox,pfscan_Prot_kinase_dom	-	no_errors	RPS6KC1	HGNC	ENSG00000136643				188	0	0	109	29	21.0145
KCTD3	0	genome.wustl.edu	37	1	215747170	215747171	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	1	215747170	215747171	-	T	INS	KCTD3	ENST00000259154	human	ensembl	74_37	+1	known	frame_shift_ins	c.125_126	p.S45fs	1.000:0.199	pfam_T1-type_BTB,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like	pfam_T1-type_BTB,superfamily_BTB/POZ_fold,superfamily_WD40_repeat_dom,smart_BTB/POZ-like,smart_WD40_repeat,pfscan_BTB/POZ-like	-	no_errors	KCTD3	HGNC	ENSG00000136636				109	0	0	67	18	21.1765
RAP1GAP	0	genome.wustl.edu	37	1	21936094	21936094	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	1	21936094	21936094	G	-	DEL	RAP1GAP	ENST00000290101	human	ensembl	74_37	-1	known	frame_shift_del	c.1237	p.L413fs	0.998	pfam_Rap_GAP_dom,pfscan_Rap_GAP_dom	pfam_Rap_GAP_dom,pfam_GoLoco_motif,smart_GoLoco_motif,pfscan_GoLoco_motif,pfscan_Rap_GAP_dom	-	no_errors	RAP1GAP	HGNC	ENSG00000076864				250	0	0	202	47	18.8755
EPRS	0	genome.wustl.edu	37	1	220157578	220157578	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	1	220157578	220157578	T	-	DEL	EPRS	ENST00000366923	human	ensembl	74_37	-1	known	frame_shift_del	c.3060	p.E1021fs	1.000	tigrfam_Pro-tRNA-ligase_IIa_arc-type	pfam_Glu/Gln-tRNA-synth_Ib_cat-dom,pfam_WHEP-TRS,pfam_Glu/Gln-tRNA-synth_Ib_codon-bd,pfam_aa-tRNA-synt_IIb_cons-dom,pfam_Pro-tRNA_ligase_II_C,pfam_Anticodon-bd,superfamily_Ribosomal_L25/Gln-tRNA_synth,superfamily_Anticodon-bd,superfamily_Pro-tRNA_synth_II,superfamily_S15_NS1_RNA-bd,superfamily_Glutathione-S-Trfase_C-like,smart_Pro-tRNA_ligase_II_C,prints_Glu/Gln-tRNA-synth,prints_Pro-tRNA-ligase_IIa,pfscan_aa-tRNA-synth_II,pfscan_WHEP-TRS,tigrfam_Pro-tRNA-ligase_IIa_arc-type,tigrfam_Glu-tRNA-synth_arc/euk	-	no_errors	EPRS	HGNC	ENSG00000136628				131	1	0.757576	132	26	16.4557
ABCB10	0	genome.wustl.edu	37	1	229653865	229653865	+	RNA	DEL	T	T	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	1	229653865	229653865	T	-	DEL	ABCB10	ENST00000498158	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	ABCB10	HGNC	ENSG00000135776				44	0	0	27	8	22.8571
C1orf131	0	genome.wustl.edu	37	1	231362513	231362513	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	1	231362513	231362513	T	-	DEL	C1orf131	ENST00000366649	human	ensembl	74_37	-1	known	frame_shift_del	c.665	p.K222fs	1.000	NULL	NULL	-	no_errors	C1orf131	HGNC	ENSG00000143633				262	0	0	181	51	21.9828
EPHB2	0	genome.wustl.edu	37	1	23240246	23240246	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	1	23240246	23240246	A	-	DEL	EPHB2	ENST00000400191	human	ensembl	74_37	+1	known	frame_shift_del	c.3051	p.K1020fs	0.270	NULL	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,pfam_Tyr-kin_ephrin_A/B_rcpt-like,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt_N_dom,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	EPHB2	HGNC	ENSG00000133216				14	0	0	12	6	33.3333
ERO1LB	0	genome.wustl.edu	37	1	236384137	236384137	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	1	236384137	236384137	A	-	DEL	ERO1LB	ENST00000354619	human	ensembl	74_37	-1	known	frame_shift_del	c.1338	p.F446fs	1.000	pfam_Ero1,pirsf_Ero1	pfam_Ero1,pirsf_Ero1	-	no_errors	ERO1LB	HGNC	ENSG00000086619				191	0	0	169	36	17.561
CHRM3	0	genome.wustl.edu	37	1	240072444	240072444	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	1	240072444	240072444	A	-	DEL	CHRM3	ENST00000255380	human	ensembl	74_37	+1	known	frame_shift_del	c.1693	p.K567fs	1.000	NULL	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_Musac_Ach_M3_rcpt,prints_Musac_Ach_rcpt,prints_GPCR_Rhodpsn	-	no_errors	CHRM3	HGNC	ENSG00000133019				97	0	0	54	23	29.8701
TCEB3	0	genome.wustl.edu	37	1	24078022	24078024	+	In_Frame_Del	DEL	GAA	GAA	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	GAA	GAA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	1	24078022	24078024	GAA	-	DEL	TCEB3	ENST00000418390	human	ensembl	74_37	+1	known	in_frame_del	c.1005_1007	p.K338in_frame_del	0.892:0.989:0.992	NULL	pfam_RNA_pol_II_trans_fac_SIII_A,pfam_TFIIS_N,superfamily_TFIIS_N,smart_TFIIS/CRSP70_N_sub,pfscan_F-box_dom	-	no_errors	TCEB3	HGNC	ENSG00000011007				116	0	0	87	22	20.1835
TCEB3	0	genome.wustl.edu	37	1	24078404	24078404	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	1	24078404	24078404	A	-	DEL	TCEB3	ENST00000418390	human	ensembl	74_37	+1	known	frame_shift_del	c.1387	p.N465fs	0.998	NULL	pfam_RNA_pol_II_trans_fac_SIII_A,pfam_TFIIS_N,superfamily_TFIIS_N,smart_TFIIS/CRSP70_N_sub,pfscan_F-box_dom	-	no_errors	TCEB3	HGNC	ENSG00000011007				256	0	0	208	57	21.5094
ZNF124	0	genome.wustl.edu	37	1	247319909	247319909	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	1	247319909	247319909	T	-	DEL	ZNF124	ENST00000543802	human	ensembl	74_37	-1	known	frame_shift_del	c.1015	p.T339fs	0.935	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF124	HGNC	ENSG00000196418				90	0	0	73	17	18.8889
OR14C36	0	genome.wustl.edu	37	1	248512384	248512384	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	1	248512384	248512384	T	-	DEL	OR14C36	ENST00000317861	human	ensembl	74_37	+1	known	frame_shift_del	c.308	p.F105fs	0.004	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR14C36	HGNC	ENSG00000177174				85	0	0	61	11	15.2778
SRRM1	0	genome.wustl.edu	37	1	24995729	24995729	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	1	24995729	24995729	C	-	DEL	SRRM1	ENST00000447431	human	ensembl	74_37	+1	known	frame_shift_del	c.1891	p.P632fs	1.000	NULL	pfam_PWI_dom,superfamily_PWI_dom,smart_PWI_dom	-	no_errors	SRRM1	HGNC	ENSG00000133226				151	0	0	151	33	17.9348
TMEM57	0	genome.wustl.edu	37	1	25775374	25775375	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	1	25775374	25775375	-	T	INS	TMEM57	ENST00000374343	human	ensembl	74_37	+1	known	frame_shift_ins	c.298_299	p.A103fs	1.000:1.000	pfam_Macoilin	pfam_Macoilin,superfamily_Prefoldin	-	no_errors	TMEM57	HGNC	ENSG00000204178				125	0	0	79	26	24.7619
ARID1A	0	genome.wustl.edu	37	1	27105930	27105931	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	1	27105930	27105931	-	G	INS	ARID1A	ENST00000324856	human	ensembl	74_37	+1	known	frame_shift_ins	c.5541_5542	p.D1849fs	1.000:1.000	NULL	pfam_DUF3518,pfam_ARID/BRIGHT_DNA-bd,superfamily_ARID/BRIGHT_DNA-bd,superfamily_ARM-type_fold,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID1A	HGNC	ENSG00000117713				163	0	0	125	31	19.8718
WDTC1	0	genome.wustl.edu	37	1	27621108	27621108	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	1	27621108	27621108	G	-	DEL	WDTC1	ENST00000319394	human	ensembl	74_37	+1	known	frame_shift_del	c.861	p.E290fs	1.000	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,smart_TPR_repeat,pfscan_TPR-contain_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDTC1	HGNC	ENSG00000142784				45	0	0	31	28	47.4576
PHACTR4	0	genome.wustl.edu	37	1	28793193	28793193	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	1	28793193	28793193	C	-	DEL	PHACTR4	ENST00000373836	human	ensembl	74_37	+1	known	frame_shift_del	c.767	p.P257fs	0.888	NULL	pfam_RPEL_repeat,smart_RPEL_repeat,pfscan_RPEL_repeat	-	no_errors	PHACTR4	HGNC	ENSG00000204138				135	0	0	111	9	7.5
YTHDF2	0	genome.wustl.edu	37	1	29095518	29095518	+	RNA	DEL	A	A	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	1	29095518	29095518	A	-	DEL	YTHDF2	ENST00000478283	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.710	-	-	-	no_errors	YTHDF2	HGNC	ENSG00000198492				49	0	0	38	12	24
ZMYM6	0	genome.wustl.edu	37	1	35484912	35484912	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	1	35484912	35484912	A	-	DEL	ZMYM6	ENST00000317538	human	ensembl	74_37	-1	novel	frame_shift_del	c.470	p.L157fs	0.001	NULL	pfam_Znf_MYM,smart_TRASH_dom	-	no_errors	ZMYM6	HGNC	ENSG00000163867				136	1	0.729927	84	30	26.3158
COL8A2	0	genome.wustl.edu	37	1	36564598	36564598	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	1	36564598	36564598	G	-	DEL	COL8A2	ENST00000303143	human	ensembl	74_37	-1	known	frame_shift_del	c.684	p.G229fs	0.947	NULL	pfam_Collagen,pfam_C1q,superfamily_Tumour_necrosis_fac-like_dom,smart_C1q,pfscan_C1q,prints_C1q	-	no_errors	COL8A2	HGNC	ENSG00000171812				31	0	0	24	10	29.4118
PTPRF	0	genome.wustl.edu	37	1	44085908	44085908	+	RNA	DEL	C	C	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	1	44085908	44085908	C	-	DEL	PTPRF	ENST00000477970	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	PTPRF	HGNC	ENSG00000142949				104	0	0	95	23	19.4915
DMBX1	0	genome.wustl.edu	37	1	46972783	46972783	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	1	46972783	46972783	C	-	DEL	DMBX1	ENST00000371956	human	ensembl	74_37	+1	known	frame_shift_del	c.101	p.D36fs	1.000	NULL	pfam_Homeobox_dom,pfam_OAR_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_OAR_dom,pfscan_Homeobox_dom	-	no_errors	DMBX1	HGNC	ENSG00000197587				95	0	0	93	7	7
ZCCHC11	0	genome.wustl.edu	37	1	52991403	52991403	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	1	52991403	52991403	T	-	DEL	ZCCHC11	ENST00000257177	human	ensembl	74_37	-1	known	frame_shift_del	c.550	p.I184fs	0.196	NULL	pfam_PAP_assoc,pfam_Znf_CCHC,pfam_Nucleotidyltransferase,superfamily_Znf_CCHC,smart_Znf_CCHC,pfscan_Znf_CCHC	-	no_errors	ZCCHC11	HGNC	ENSG00000134744				415	0	0	348	99	22.1477
PODN	0	genome.wustl.edu	37	1	53543377	53543377	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	1	53543377	53543377	C	-	DEL	PODN	ENST00000312553	human	ensembl	74_37	+1	known	frame_shift_del	c.903	p.P303fs	0.997	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,smart_LRR-contain_N,smart_Leu-rich_rpt_RNase_inh_sub-typ,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	PODN	HGNC	ENSG00000174348				332	0	0	223	44	16.4794
ENSG00000201003	0	genome.wustl.edu	37	1	54236776	54236777	+	RNA	INS	-	-	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	1	54236776	54236777	-	C	INS	ENSG00000201003	ENST00000364133	human	ensembl	74_37	-1	novel	rna	NULL	NULL	0.144:0.164	-	-	-	no_errors	SNORA58	RFAM	ENSG00000201003				18	0	0	22	3	12
FAM151A	0	genome.wustl.edu	37	1	55081757	55081757	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	1	55081757	55081757	G	-	DEL	FAM151A	ENST00000302250	human	ensembl	74_37	-1	known	frame_shift_del	c.351	p.T118fs	0.037	pfam_DUF2181	pfam_DUF2181	-	no_errors	FAM151A	HGNC	ENSG00000162391				58	0	0	46	16	25.8065
RPL22	0	genome.wustl.edu	37	1	6257785	6257785	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	1	6257785	6257785	T	-	DEL	RPL22	ENST00000234875	human	ensembl	74_37	-1	known	frame_shift_del	c.44	p.K15fs	1.000	pfam_Ribosomal_L22e	pfam_Ribosomal_L22e	-	no_errors	RPL22	HGNC	ENSG00000116251				85	0	0	65	25	27.7778
SGIP1	0	genome.wustl.edu	37	1	67099769	67099769	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	1	67099769	67099769	A	-	DEL	SGIP1	ENST00000237247	human	ensembl	74_37	+1	known	frame_shift_del	c.106	p.K38fs	0.997	NULL	pfam_Muniscin_C-term_mu_dom,pfam_Clathrin_mu_C,superfamily_Clathrin_mu_C	-	no_errors	SGIP1	HGNC	ENSG00000118473				34	0	0	15	12	44.4444
SGIP1	0	genome.wustl.edu	37	1	67147618	67147618	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	1	67147618	67147618	T	-	DEL	SGIP1	ENST00000237247	human	ensembl	74_37	+1	known	frame_shift_del	c.893	p.F299fs	1.000	NULL	pfam_Muniscin_C-term_mu_dom,pfam_Clathrin_mu_C,superfamily_Clathrin_mu_C	-	no_errors	SGIP1	HGNC	ENSG00000118473				251	1	0.396825	195	51	20.7317
GNG12	0	genome.wustl.edu	37	1	68171151	68171151	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	1	68171151	68171151	T	-	DEL	GNG12	ENST00000370982	human	ensembl	74_37	-1	known	frame_shift_del	c.202	p.T68fs	1.000	smart_G-protein_gamma-like_dom,pfscan_G-protein_gamma-like_dom	pfam_G-protein_gamma-like_dom,superfamily_G-protein_gamma-like_dom,smart_G-protein_gamma-like_dom,pfscan_G-protein_gamma-like_dom,prints_Gprotein-gamma	-	no_errors	GNG12	HGNC	ENSG00000172380				198	0	0	167	37	18.1373
GIPC2	0	genome.wustl.edu	37	1	78511969	78511971	+	In_Frame_Del	DEL	AGG	AGG	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	AGG	AGG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	1	78511969	78511971	AGG	-	DEL	GIPC2	ENST00000370759	human	ensembl	74_37	+1	known	in_frame_del	c.191_193	p.E65in_frame_del	0.921:0.942:1.000	pirsf_UCP038083_PDZ	pfam_PDZ,superfamily_PDZ,superfamily_Ig_E-set,smart_PDZ,pirsf_UCP038083_PDZ,pfscan_PDZ	-	no_errors	GIPC2	HGNC	ENSG00000137960				30	0	0	25	3	10.7143
RERE	0	genome.wustl.edu	37	1	8415098	8415099	+	RNA	INS	-	-	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	1	8415098	8415099	-	C	INS	RERE	ENST00000467350	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.961:0.793	-	-	-	no_errors	RERE	HGNC	ENSG00000142599				58	0	0	58	11	15.942
RERE	0	genome.wustl.edu	37	1	8420009	8420010	+	Frame_Shift_Del	DEL	CA	CA	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	CA	CA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	1	8420009	8420010	CA	-	DEL	RERE	ENST00000337907	human	ensembl	74_37	-1	known	frame_shift_del	c.3433_3432	p.A1145fs	1.000:1.000	pfam_Atrophin-like	pfam_Atrophin-like,pfam_BAH_dom,pfam_ELM2_dom,pfam_Znf_GATA,superfamily_Homeodomain-like,smart_BAH_dom,smart_SANT/Myb,smart_Znf_GATA,pfscan_BAH_dom,pfscan_ELM2_dom	-	no_errors	RERE	HGNC	ENSG00000142599				99	0	0	86	20	18.8679
DDAH1	0	genome.wustl.edu	37	1	85787117	85787118	+	RNA	INS	-	-	GG			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	1	85787117	85787118	-	GG	INS	DDAH1	ENST00000483110	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.002:0.010	-	-	-	no_errors	DDAH1	HGNC	ENSG00000153904				105	0	0	87	13	13
ODF2L	0	genome.wustl.edu	37	1	86826142	86826142	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	1	86826142	86826142	T	-	DEL	ODF2L	ENST00000317336	human	ensembl	74_37	-1	known	frame_shift_del	c.1221	p.K407fs	0.038	NULL	NULL	-	no_errors	ODF2L	HGNC	ENSG00000122417				76	0	0	50	17	25.3731
CLCA4	0	genome.wustl.edu	37	1	87025666	87025666	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	1	87025666	87025666	T	-	DEL	CLCA4	ENST00000370563	human	ensembl	74_37	+1	known	frame_shift_del	c.211	p.F73fs	0.527	pfam_Cl_channel_Ca,tigrfam_CaCC_prot	pfam_Cl_channel_Ca,pfam_DUF1973,pfam_VWF_A,superfamily_Fibronectin_type3,smart_VWF_A,pfscan_VWF_A,tigrfam_CaCC_prot	-	no_errors	CLCA4	HGNC	ENSG00000016602				163	0	0	132	21	13.7255
LRRC8B	0	genome.wustl.edu	37	1	90048567	90048567	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	1	90048567	90048567	T	-	DEL	LRRC8B	ENST00000330947	human	ensembl	74_37	+1	known	frame_shift_del	c.358	p.F121fs	1.000	pfam_LRR_protein-8_N	pfam_LRR_protein-8_N,pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC8B	HGNC	ENSG00000197147				234	0	0	210	59	21.9331
HFM1	0	genome.wustl.edu	37	1	91781979	91781980	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	1	91781979	91781980	-	T	INS	HFM1	ENST00000370425	human	ensembl	74_37	-1	known	frame_shift_ins	c.2867_2866	p.I956fs	1.000:1.000	pfam_Sec63-dom,smart_Sec63-dom	pfam_Sec63-dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Sec63-dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	HFM1	HGNC	ENSG00000162669				126	0	0	92	18	16.3636
EVI5	0	genome.wustl.edu	37	1	93169000	93169000	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	1	93169000	93169000	A	-	DEL	EVI5	ENST00000543509	human	ensembl	74_37	-1	known	frame_shift_del	c.648	p.F216fs	1.000	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	EVI5	HGNC	ENSG00000067208				110	0	0	113	12	9.6
SNORA66	0	genome.wustl.edu	37	1	93306280	93306281	+	RNA	DEL	AA	AA	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	1	93306280	93306281	AA	-	DEL	SNORA66	ENST00000384792	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000:1.000	-	-	-	no_errors	SNORA66	HGNC	ENSG00000207523				87	0	0	62	15	19.4805
AGRN	0	genome.wustl.edu	37	1	981861	981861	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	1	981861	981861	C	-	DEL	AGRN	ENST00000379370	human	ensembl	74_37	+1	known	frame_shift_del	c.2996	p.G1002fs	0.000	NULL	pfam_Laminin_G,pfam_Agrin_NtA,pfam_Kazal_dom,pfam_EGF_laminin,pfam_SEA_dom,pfam_EG-like_dom,superfamily_TIMP-like_OB-fold,superfamily_ConA-like_lec_gl_sf,smart_FacI_MAC,smart_Fol_N,smart_Kazal_dom,smart_EG-like_dom,smart_EGF_laminin,smart_SEA_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Agrin_NtA,pfscan_SEA_dom	-	no_errors	AGRN	HGNC	ENSG00000188157				30	0	0	26	3	10.3448
GBF1	0	genome.wustl.edu	37	10	104120909	104120909	+	RNA	DEL	A	A	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	10	104120909	104120909	A	-	DEL	GBF1	ENST00000476019	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	GBF1	HGNC	ENSG00000107862				66	0	0	37	16	30.1887
SLK	0	genome.wustl.edu	37	10	105778691	105778691	+	RNA	DEL	T	T	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	10	105778691	105778691	T	-	DEL	SLK	ENST00000474260	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SLK	HGNC	ENSG00000065613				109	0	0	90	28	23.7288
ADD3	0	genome.wustl.edu	37	10	111893350	111893350	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	10	111893350	111893350	A	-	DEL	ADD3	ENST00000356080	human	ensembl	74_37	+1	known	frame_shift_del	c.2095	p.K701fs	1.000	NULL	pfam_Aldolase_II/adducin_N,superfamily_Aldolase_II/adducin_N	-	no_errors	ADD3	HGNC	ENSG00000148700				170	0	0	153	36	19.0476
FAM204A	0	genome.wustl.edu	37	10	120095130	120095130	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	10	120095130	120095130	T	-	DEL	FAM204A	ENST00000369172	human	ensembl	74_37	-1	known	frame_shift_del	c.258	p.K86fs	0.959	NULL	NULL	-	no_errors	FAM204A	HGNC	ENSG00000165669				60	0	0	45	10	18.1818
TIAL1	0	genome.wustl.edu	37	10	121335157	121335157	+	RNA	DEL	T	T	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	10	121335157	121335157	T	-	DEL	TIAL1	ENST00000463089	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.987	-	-	-	no_errors	TIAL1	HGNC	ENSG00000151923				299	0	0	228	58	20.2797
OAT	0	genome.wustl.edu	37	10	126091634	126091634	+	RNA	DEL	A	A	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	10	126091634	126091634	A	-	DEL	OAT	ENST00000471127	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	OAT	HGNC	ENSG00000065154				193	0	0	179	31	14.7619
ZRANB1	0	genome.wustl.edu	37	10	126673561	126673561	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	10	126673561	126673561	A	-	DEL	ZRANB1	ENST00000359653	human	ensembl	74_37	+1	known	frame_shift_del	c.2127	p.*709fs	0.994	NULL	pfam_OTU,pfam_Znf_RanBP2,smart_Znf_RanBP2,pfscan_OTU,pfscan_Znf_RanBP2	-	no_errors	ZRANB1	HGNC	ENSG00000019995				29	0	0	29	2	6.45161
BEND7	0	genome.wustl.edu	37	10	13481173	13481174	+	Frame_Shift_Ins	INS	-	-	AG			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	10	13481173	13481174	-	AG	INS	BEND7	ENST00000396900	human	ensembl	74_37	-1	known	frame_shift_ins	c.1559_1558	p.*520fs	0.000:0.001	NULL	pfam_BEN_domain	-	no_errors	BEND7	HGNC	ENSG00000165626				25	0	0	20	9	31.0345
TUBGCP2	0	genome.wustl.edu	37	10	135093332	135093332	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	10	135093332	135093332	G	-	DEL	TUBGCP2	ENST00000543663	human	ensembl	74_37	-1	known	frame_shift_del	c.2731	p.Q911fs	0.463	NULL	pfam_TUBGCP,superfamily_Ocr	-	no_errors	TUBGCP2	HGNC	ENSG00000130640				13	0	0	2	3	60
FRMD4A	0	genome.wustl.edu	37	10	13696452	13696452	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	10	13696452	13696452	G	-	DEL	FRMD4A	ENST00000357447	human	ensembl	74_37	-1	known	frame_shift_del	c.3014	p.P1005fs	1.000	NULL	pfam_DUF3338,pfam_FERM_PH-like_C,pfam_FERM_central,pfam_FERM_N,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain,prints_Band_41_fam	-	no_errors	FRMD4A	HGNC	ENSG00000151474				164	0	0	99	30	23.2558
FRMD4A	0	genome.wustl.edu	37	10	13696459	13696459	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	10	13696459	13696459	T	-	DEL	FRMD4A	ENST00000357447	human	ensembl	74_37	-1	known	frame_shift_del	c.3007	p.T1003fs	1.000	NULL	pfam_DUF3338,pfam_FERM_PH-like_C,pfam_FERM_central,pfam_FERM_N,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain,prints_Band_41_fam	-	no_errors	FRMD4A	HGNC	ENSG00000151474				148	0	0	105	7	6.25
PTER	0	genome.wustl.edu	37	10	16526546	16526546	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	10	16526546	16526546	A	-	DEL	PTER	ENST00000298942	human	ensembl	74_37	+1	known	frame_shift_del	c.163	p.N56fs	1.000	pfam_Aryldialkylphosphatase	pfam_Aryldialkylphosphatase,pfam_TatD_family	-	no_errors	PTER	HGNC	ENSG00000165983				179	0	0	149	39	20.7447
KIF5B	0	genome.wustl.edu	37	10	32311826	32311826	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	10	32311826	32311826	T	-	DEL	KIF5B	ENST00000302418	human	ensembl	74_37	-1	known	frame_shift_del	c.1864	p.M622fs	1.000	superfamily_P-loop_NTPase	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF5B	HGNC	ENSG00000170759				201	0	0	170	25	12.8205
CREM	0	genome.wustl.edu	37	10	35456559	35456559	+	RNA	DEL	T	T	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	10	35456559	35456559	T	-	DEL	CREM	ENST00000497686	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	CREM	HGNC	ENSG00000095794				58	0	0	32	17	34.6939
FAM208B	0	genome.wustl.edu	37	10	5784415	5784415	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	10	5784415	5784415	A	-	DEL	FAM208B	ENST00000328090	human	ensembl	74_37	+1	known	frame_shift_del	c.2683	p.T897fs	0.380	pfam_DUF3715	pfam_DUF3715,pfam_DUF3699	-	no_errors	FAM208B	HGNC	ENSG00000108021				165	0	0	130	29	18.239
TFAM	0	genome.wustl.edu	37	10	60148570	60148571	+	Frame_Shift_Del	DEL	AA	AA	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	10	60148570	60148571	AA	-	DEL	TFAM	ENST00000487519	human	ensembl	74_37	+1	known	frame_shift_del	c.432_433	p.K147fs	0.006:0.936	superfamily_HMG_box_dom	pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	-	no_errors	TFAM	HGNC	ENSG00000108064				94	0	0	54	11	16.9231
ZNF365	0	genome.wustl.edu	37	10	64159513	64159513	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	10	64159513	64159513	A	-	DEL	ZNF365	ENST00000395254	human	ensembl	74_37	+1	known	frame_shift_del	c.1189	p.K399fs	1.000	NULL	NULL	-	no_errors	ZNF365	HGNC	ENSG00000138311				59	0	0	37	4	9.7561
JMJD1C	0	genome.wustl.edu	37	10	64966978	64966978	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	10	64966978	64966978	T	-	DEL	JMJD1C	ENST00000399262	human	ensembl	74_37	-1	known	frame_shift_del	c.4451	p.K1484fs	1.000	NULL	pfam_JmjC_dom,smart_JmjC_dom,pfscan_JmjC_dom	-	no_errors	JMJD1C	HGNC	ENSG00000171988				166	0	0	150	36	19.3548
ANXA11	0	genome.wustl.edu	37	10	81923292	81923293	+	Frame_Shift_Del	DEL	GA	GA	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	GA	GA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	10	81923292	81923293	GA	-	DEL	ANXA11	ENST00000265447	human	ensembl	74_37	-1	known	frame_shift_del	c.1027_1026	p.Q343fs	1.000:0.991	NULL	pfam_Annexin_repeat,smart_Annexin_repeat,prints_Annexin,prints_AnnexinXI,prints_AnnexinVII	-	no_errors	ANXA11	HGNC	ENSG00000122359				8	0	0	7	2	22.2222
PTEN	0	genome.wustl.edu	37	10	89717770	89717770	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	10	89717770	89717770	A	-	DEL	PTEN	ENST00000371953	human	ensembl	74_37	+1	known	frame_shift_del	c.795	p.K267fs	0.994	pfam_Tensin_phosphatase_C2-dom,superfamily_C2_dom,pirsf_Bifunc_PIno_P3_Pase/Pase_PTEN,pfscan_Tensin_phosphatase_C2-dom	pfam_Tensin_phosphatase_C2-dom,pfam_Dual-sp_phosphatase_cat-dom,pfam_Tyr_Pase_rcpt/non-rcpt,superfamily_C2_dom,smart_Tyr_Pase_cat,pirsf_Bifunc_PIno_P3_Pase/Pase_PTEN,pfscan_Tyr/Dual-sp_Pase,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	PTEN	HGNC	ENSG00000171862				87	0	0	63	62	49.6
DYNC2H1	0	genome.wustl.edu	37	11	103048288	103048288	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	11	103048288	103048288	A	-	DEL	DYNC2H1	ENST00000398093	human	ensembl	74_37	+1	known	frame_shift_del	c.5878	p.K1961fs	1.000	superfamily_P-loop_NTPase	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DYNC2H1	HGNC	ENSG00000187240				47	0	0	27	10	27.027
CD3G	0	genome.wustl.edu	37	11	118220583	118220583	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	11	118220583	118220583	A	-	DEL	CD3G	ENST00000532917	human	ensembl	74_37	+1	known	frame_shift_del	c.205	p.K71fs	0.000	smart_Ig_sub2	pfam_Phos_immunorcpt_sig_ITAM,smart_Ig_sub2,smart_Phos_immunorcpt_sig_ITAM,pfscan_Phos_immunorcpt_sig_ITAM	-	no_errors	CD3G	HGNC	ENSG00000160654				116	1	0.854701	101	25	19.8413
MFRP	0	genome.wustl.edu	37	11	119213687	119213688	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	11	119213687	119213688	-	G	INS	MFRP	ENST00000449574	human	ensembl	74_37	-1	known	frame_shift_ins	c.1151_1150	p.H384fs	0.000:0.000	pfam_CUB_dom,superfamily_CUB_dom,smart_CUB_dom,pfscan_CUB_dom	pfam_CUB_dom,pfam_Frizzled_dom,pfam_LDrepeatLR_classA_rpt,superfamily_CUB_dom,superfamily_Frizzled_dom,superfamily_LDrepeatLR_classA_rpt,smart_CUB_dom,smart_LDrepeatLR_classA_rpt,smart_Frizzled_dom,pfscan_CUB_dom,pfscan_Frizzled_dom,pfscan_LDrepeatLR_classA_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	MFRP	HGNC	ENSG00000235718				25	0	0	21	3	12.5
GRAMD1B	0	genome.wustl.edu	37	11	123448204	123448205	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	11	123448204	123448205	-	A	INS	GRAMD1B	ENST00000322282	human	ensembl	74_37	+1	known	frame_shift_ins	c.153_154	p.S52fs	1.000:1.000	NULL	pfam_GRAM,smart_GRAM	-	no_errors	GRAMD1B	HGNC	ENSG00000023171				24	0	0	12	3	20
MUC5B	0	genome.wustl.edu	37	11	1264717	1264717	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	11	1264717	1264717	C	-	DEL	MUC5B	ENST00000447027	human	ensembl	74_37	+1	known	frame_shift_del	c.6616	p.S2208fs	0.005	NULL	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,pfam_VWF_C,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_C	-	no_errors	MUC5B	HGNC	ENSG00000117983				36	0	0	26	11	29.7297
NFRKB	0	genome.wustl.edu	37	11	129752496	129752496	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	11	129752496	129752496	T	-	DEL	NFRKB	ENST00000524794	human	ensembl	74_37	-1	known	frame_shift_del	c.1007	p.K336fs	1.000	NULL	NULL	-	no_errors	NFRKB	HGNC	ENSG00000170322				156	0	0	121	37	23.4177
BRSK2	0	genome.wustl.edu	37	11	1466880	1466880	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	11	1466880	1466880	C	-	DEL	BRSK2	ENST00000382179	human	ensembl	74_37	+1	known	frame_shift_del	c.1195	p.R401fs	1.000	superfamily_Kinase-like_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	BRSK2	HGNC	ENSG00000174672				12	0	0	7	2	22.2222
E2F8	0	genome.wustl.edu	37	11	19259637	19259637	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	11	19259637	19259637	T	-	DEL	E2F8	ENST00000250024	human	ensembl	74_37	-1	known	frame_shift_del	c.58	p.T20fs	1.000	NULL	pfam_E2F_TDP	-	no_errors	E2F8	HGNC	ENSG00000129173				102	0	0	63	24	27.5862
DBX1	0	genome.wustl.edu	37	11	20178177	20178177	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	11	20178177	20178177	G	-	DEL	DBX1	ENST00000227256	human	ensembl	74_37	-1	known	frame_shift_del	c.732	p.G245fs	0.000	superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	-	no_errors	DBX1	HGNC	ENSG00000109851				86	0	0	90	27	23.0769
PAMR1	0	genome.wustl.edu	37	11	35513670	35513670	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	11	35513670	35513670	C	-	DEL	PAMR1	ENST00000278360	human	ensembl	74_37	-1	known	frame_shift_del	c.302	p.G101fs	0.999	smart_EG-like_dom	pfam_Peptidase_S1,pfam_CUB_dom,pfam_Sushi_SCR_CCP,pfam_EG-like_dom,superfamily_Trypsin-like_Pept_dom,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_EG-like_dom,smart_CUB_dom,smart_EGF-like_Ca-bd_dom,smart_Sushi_SCR_CCP,smart_Peptidase_S1,prints_Peptidase_S1A,pfscan_CUB_dom,pfscan_EG-like_dom,pfscan_Sushi_SCR_CCP,pfscan_Peptidase_S1	-	no_errors	PAMR1	HGNC	ENSG00000149090				448	0	0	352	85	19.4508
STIM1	0	genome.wustl.edu	37	11	4091365	4091367	+	In_Frame_Del	DEL	GAA	GAA	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	GAA	GAA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	11	4091365	4091367	GAA	-	DEL	STIM1	ENST00000300737	human	ensembl	74_37	+1	known	in_frame_del	c.723_725	p.K243in_frame_del	1.000:1.000:1.000	NULL	pfam_SAM_2,pfam_SAM_type1,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	-	no_errors	STIM1	HGNC	ENSG00000167323				125	0	0	77	27	25.9615
PHF21A	0	genome.wustl.edu	37	11	45967494	45967495	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	11	45967494	45967495	-	G	INS	PHF21A	ENST00000257821	human	ensembl	74_37	-1	known	frame_shift_ins	c.1349_1348	p.Q450fs	1.000:1.000	NULL	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	PHF21A	HGNC	ENSG00000135365				180	0	0	129	23	15.1316
C11orf49	0	genome.wustl.edu	37	11	47074021	47074021	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	11	47074021	47074021	T	-	DEL	C11orf49	ENST00000378615	human	ensembl	74_37	+1	known	frame_shift_del	c.232	p.L79fs	0.998	NULL	NULL	-	no_errors	C11orf49	HGNC	ENSG00000149179				237	0	0	199	49	19.7581
ARFGAP2	0	genome.wustl.edu	37	11	47196853	47196853	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	11	47196853	47196853	A	-	DEL	ARFGAP2	ENST00000524782	human	ensembl	74_37	-1	known	frame_shift_del	c.276	p.R93fs	1.000	pfam_ArfGAP,smart_ArfGAP,pfscan_ArfGAP	pfam_ArfGAP,smart_ArfGAP,pfscan_ArfGAP,prints_ArfGAP	-	no_errors	ARFGAP2	HGNC	ENSG00000149182				153	0	0	142	43	23.2432
TRIM51HP	0	genome.wustl.edu	37	11	55065032	55065032	+	RNA	DEL	T	T	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	11	55065032	55065032	T	-	DEL	TRIM51HP	ENST00000526016	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.010	-	-	-	no_errors	TRIM51HP	HGNC	ENSG00000166007				96	0	0	72	15	17.2414
OR4P4	0	genome.wustl.edu	37	11	55406142	55406142	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	11	55406142	55406142	T	-	DEL	OR4P4	ENST00000314612	human	ensembl	74_37	+1	known	frame_shift_del	c.309	p.F105fs	0.097	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4P4	HGNC	ENSG00000181927				219	0	0	154	40	20.6186
ENSG00000254815	0	genome.wustl.edu	37	11	558069	558069	+	RNA	DEL	G	G	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	11	558069	558069	G	-	DEL	ENSG00000254815	ENST00000527620	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	RP11-496I9.1	Clone_based_vega_gene	ENSG00000254815				36	0	0	50	6	10.7143
TRIM5	0	genome.wustl.edu	37	11	5687321	5687323	+	Splice_Site	DEL	AAA	AAA	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	AAA	AAA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	11	5687321	5687323	AAA	-	DEL	TRIM5	ENST00000305836	human	ensembl	74_37	-1	known	splice_site_del	c.760-4_760-2	e5-2	0.002:0.005:0.007	-	-	-	no_errors	TRIM5	HGNC	ENSG00000132256				75	0	0	69	13	15.8537
OR5B17	0	genome.wustl.edu	37	11	58125922	58125922	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	11	58125922	58125922	A	-	DEL	OR5B17	ENST00000357377	human	ensembl	74_37	-1	known	frame_shift_del	c.621	p.F207fs	0.018	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR5B17	HGNC	ENSG00000197786				77	0	0	70	21	23.0769
MYRF	0	genome.wustl.edu	37	11	61533640	61533640	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	11	61533640	61533640	G	-	DEL	MYRF	ENST00000278836	human	ensembl	74_37	+1	known	frame_shift_del	c.345	p.G117fs	0.958	NULL	pfam_NDT80_DNA-bd_dom,superfamily_p53-like_TF_DNA-bd	-	no_errors	MYRF	HGNC	ENSG00000124920				83	0	0	62	9	12.6761
LGALS12	0	genome.wustl.edu	37	11	63278567	63278568	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	11	63278567	63278568	-	C	INS	LGALS12	ENST00000340246	human	ensembl	74_37	+1	known	frame_shift_ins	c.617_618	p.R208fs	0.538:0.529	NULL	pfam_Galectin_CRD,superfamily_ConA-like_lec_gl_sf,smart_Galectin_CRD	-	no_errors	LGALS12	HGNC	ENSG00000133317				72	0	0	66	8	10.8108
RARRES3	0	genome.wustl.edu	37	11	63313709	63313709	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	11	63313709	63313709	A	-	DEL	RARRES3	ENST00000255688	human	ensembl	74_37	+1	known	frame_shift_del	c.476	p.A162fs	0.001	NULL	pfam_LRAT-like_dom	-	no_errors	RARRES3	HGNC	ENSG00000133321				147	1	0.675676	153	32	17.2973
DNAJC4	0	genome.wustl.edu	37	11	64000186	64000186	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	11	64000186	64000186	C	-	DEL	DNAJC4	ENST00000321685	human	ensembl	74_37	+1	known	frame_shift_del	c.376	p.N128fs	0.002	NULL	pfam_DnaJ_domain,superfamily_DnaJ_domain,smart_DnaJ_domain,pfscan_DnaJ_domain,prints_DnaJ_domain	-	no_errors	DNAJC4	HGNC	ENSG00000110011				79	0	0	46	10	17.8571
SF3B2	0	genome.wustl.edu	37	11	65836145	65836146	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	11	65836145	65836146	-	A	INS	SF3B2	ENST00000322535	human	ensembl	74_37	+1	known	frame_shift_ins	c.2617_2618	p.R876fs	1.000:1.000	NULL	pfam_DUF382,pfam_PSP,pfam_SAP_dom,smart_SAP_dom,smart_PSP,pfscan_SAP_dom	-	no_errors	SF3B2	HGNC	ENSG00000087365				106	0	0	82	19	18.8119
TBC1D10C	0	genome.wustl.edu	37	11	67176565	67176565	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	11	67176565	67176565	C	-	DEL	TBC1D10C	ENST00000312390	human	ensembl	74_37	+1	known	frame_shift_del	c.954	p.A321fs	0.756	superfamily_Rab-GTPase-TBC_dom	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D10C	HGNC	ENSG00000175463				22	0	0	21	5	19.2308
OR2AG2	0	genome.wustl.edu	37	11	6789899	6789899	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	11	6789899	6789899	C	-	DEL	OR2AG2	ENST00000338569	human	ensembl	74_37	-1	known	frame_shift_del	c.290	p.C97fs	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2AG2	HGNC	ENSG00000188124				115	0	0	97	24	19.8347
INPPL1	0	genome.wustl.edu	37	11	71948208	71948209	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	11	71948208	71948209	-	C	INS	INPPL1	ENST00000298229	human	ensembl	74_37	+1	known	frame_shift_ins	c.2920_2921	p.P977fs	0.025:0.066	NULL	pfam_Endo/exonuclease/phosphatase,pfam_SH2,pfam_SAM_2,pfam_SAM_type1,superfamily_Endo/exonuclease/phosphatase,superfamily_SAM/pointed,smart_SH2,smart_IPPc,smart_SAM,pfscan_SAM,pfscan_SH2,prints_SH2	-	no_errors	INPPL1	HGNC	ENSG00000165458				181	0	0	207	27	11.5385
INPPL1	0	genome.wustl.edu	37	11	71948748	71948748	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	11	71948748	71948748	C	-	DEL	INPPL1	ENST00000298229	human	ensembl	74_37	+1	known	frame_shift_del	c.3460	p.R1156fs	0.962	NULL	pfam_Endo/exonuclease/phosphatase,pfam_SH2,pfam_SAM_2,pfam_SAM_type1,superfamily_Endo/exonuclease/phosphatase,superfamily_SAM/pointed,smart_SH2,smart_IPPc,smart_SAM,pfscan_SAM,pfscan_SH2,prints_SH2	-	no_errors	INPPL1	HGNC	ENSG00000165458				39	0	0	28	5	15.1515
UVRAG	0	genome.wustl.edu	37	11	75694431	75694431	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	11	75694431	75694431	A	-	DEL	UVRAG	ENST00000356136	human	ensembl	74_37	+1	known	frame_shift_del	c.700	p.S237fs	1.000	NULL	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom	-	no_errors	UVRAG	HGNC	ENSG00000198382				52	0	0	38	12	24
PDDC1	0	genome.wustl.edu	37	11	770899	770899	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	11	770899	770899	A	-	DEL	PDDC1	ENST00000319863	human	ensembl	74_37	-1	known	frame_shift_del	c.661	p.*221fs	0.965	NULL	pfam_ThiJ/PfpI	-	no_errors	PDDC1	HGNC	ENSG00000177225				107	0	0	116	34	22.6667
SYTL2	0	genome.wustl.edu	37	11	85436591	85436591	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	11	85436591	85436591	A	-	DEL	SYTL2	ENST00000359152	human	ensembl	74_37	-1	known	frame_shift_del	c.2481	p.P828fs	0.001	NULL	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	-	no_errors	SYTL2	HGNC	ENSG00000137501				220	0	0	166	64	27.8261
ST5	0	genome.wustl.edu	37	11	8752619	8752619	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	11	8752619	8752619	G	-	DEL	ST5	ENST00000313726	human	ensembl	74_37	-1	known	frame_shift_del	c.218	p.P73fs	0.000	NULL	pfam_DENN_dom,pfam_uDENN_dom,pfam_dDENN_dom,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom	-	no_errors	ST5	HGNC	ENSG00000166444				98	0	0	96	10	9.43396
IPO7	0	genome.wustl.edu	37	11	9450086	9450087	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	11	9450086	9450087	-	A	INS	IPO7	ENST00000379719	human	ensembl	74_37	+1	known	frame_shift_ins	c.1337_1336	p.I448fs	1.000:1.000	superfamily_ARM-type_fold	pfam_Importin-beta_N,pfam_Cse1,superfamily_ARM-type_fold,smart_Importin-beta_N,pfscan_Importin-beta_N	-	no_errors	IPO7	HGNC	ENSG00000205339				47	0	0	33	10	23.2558
FAM216A	0	genome.wustl.edu	37	12	110927860	110927860	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	12	110927860	110927860	A	-	DEL	FAM216A	ENST00000377673	human	ensembl	74_37	+1	known	frame_shift_del	c.740	p.K249fs	1.000	NULL	NULL	-	no_errors	FAM216A	HGNC	ENSG00000204856				148	0	0	120	31	20.5298
VSIG10	0	genome.wustl.edu	37	12	118511707	118511707	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	12	118511707	118511707	G	-	DEL	VSIG10	ENST00000359236	human	ensembl	74_37	-1	known	frame_shift_del	c.1016	p.P339fs	0.001	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	-	no_errors	VSIG10	HGNC	ENSG00000176834				75	0	0	31	8	20.5128
MSI1	0	genome.wustl.edu	37	12	120800902	120800903	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	12	120800902	120800903	-	C	INS	MSI1	ENST00000257552	human	ensembl	74_37	-1	known	frame_shift_ins	c.346_345	p.L115fs	1.000:0.538	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	MSI1	HGNC	ENSG00000135097				224	2	0.884956	195	22	10.1382
PLEKHA5	0	genome.wustl.edu	37	12	19514518	19514518	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	12	19514518	19514518	A	-	DEL	PLEKHA5	ENST00000317589	human	ensembl	74_37	+1	known	frame_shift_del	c.3177	p.T1062fs	0.273	NULL	pfam_Pleckstrin_homology,superfamily_WW_dom,smart_WW_dom,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_WW_dom	-	no_errors	PLEKHA5	HGNC	ENSG00000052126				13	0	0	16	7	30.4348
C2CD5	0	genome.wustl.edu	37	12	22625276	22625276	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	12	22625276	22625276	A	-	DEL	C2CD5	ENST00000333957	human	ensembl	74_37	-1	known	frame_shift_del	c.2113	p.Y705fs	1.000	NULL	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	-	no_errors	C2CD5	HGNC	ENSG00000111731				8	0	0	8	3	27.2727
ITPR2	0	genome.wustl.edu	37	12	26640150	26640150	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	12	26640150	26640150	T	-	DEL	ITPR2	ENST00000381340	human	ensembl	74_37	-1	known	frame_shift_del	c.5405	p.K1802fs	1.000	superfamily_ARM-type_fold	pfam_Ca-rel_channel,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ARM-type_fold,smart_MIR_motif,prints_InsP3_rcpt-bd,pfscan_MIR_motif	-	no_errors	ITPR2	HGNC	ENSG00000123104				82	0	0	47	20	29.8507
COL2A1	0	genome.wustl.edu	37	12	48375934	48375936	+	In_Frame_Del	DEL	CAA	CAA	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	CAA	CAA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	12	48375934	48375936	CAA	-	DEL	COL2A1	ENST00000380518	human	ensembl	74_37	-1	known	in_frame_del	c.2311_2309	p.V770in_frame_del	1.000:0.990:0.988	NULL	pfam_Collagen,pfam_Fib_collagen_C,pfam_VWF_C,superfamily_Fibrinogen_a/b/g_C_dom,smart_VWF_C,smart_Fib_collagen_C,pfscan_VWF_C	-	no_errors	COL2A1	HGNC	ENSG00000139219				169	0	0	116	17	12.782
SENP1	0	genome.wustl.edu	37	12	48458896	48458896	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	12	48458896	48458896	T	-	DEL	SENP1	ENST00000004980	human	ensembl	74_37	-1	known	frame_shift_del	c.1227	p.G410fs	0.206	NULL	pfam_Peptidase_C48,pfscan_Peptidase_C48	-	no_errors	SENP1	HGNC	ENSG00000079387				42	0	0	24	7	22.5806
KMT2D	0	genome.wustl.edu	37	12	49434005	49434005	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	12	49434005	49434005	G	-	DEL	KMT2D	ENST00000301067	human	ensembl	74_37	-1	known	frame_shift_del	c.7548	p.N2517fs	0.004	NULL	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_box_dom,smart_Znf_PHD,smart_Znf_RING,smart_HMG_box_dom,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	KMT2D	HGNC	ENSG00000167548				43	0	0	33	10	23.2558
SLC11A2	0	genome.wustl.edu	37	12	51392999	51392999	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	12	51392999	51392999	A	-	DEL	SLC11A2	ENST00000394904	human	ensembl	74_37	-1	known	frame_shift_del	c.720	p.F240fs	1.000	pfam_NRAMP-like,prints_NRAMP-like,tigrfam_NRAMP-like	pfam_NRAMP-like,prints_NRAMP-like,tigrfam_NRAMP-like	-	no_errors	SLC11A2	HGNC	ENSG00000110911				97	0	0	69	15	17.8571
CBX5	0	genome.wustl.edu	37	12	54645832	54645832	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	12	54645832	54645832	T	-	DEL	CBX5	ENST00000209875	human	ensembl	74_37	-1	known	frame_shift_del	c.317	p.K106fs	1.000	superfamily_Chromodomain-like	pfam_Chromo_shadow_dom,pfam_Chromo_domain,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Chromo_shadow_dom,pfscan_Chromo_domain/shadow,prints_Chromo_dom_subgr	-	no_errors	CBX5	HGNC	ENSG00000094916				343	1	0.290698	296	102	25.6281
OR6C75	0	genome.wustl.edu	37	12	55759192	55759192	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	12	55759192	55759192	T	-	DEL	OR6C75	ENST00000343399	human	ensembl	74_37	+1	known	frame_shift_del	c.298	p.F102fs	0.964	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR6C75	HGNC	ENSG00000187857				249	1	0.4	188	63	25.0996
OR6C75	0	genome.wustl.edu	37	12	55759486	55759486	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	12	55759486	55759486	T	-	DEL	OR6C75	ENST00000343399	human	ensembl	74_37	+1	known	frame_shift_del	c.592	p.L200fs	0.582	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR6C75	HGNC	ENSG00000187857				210	2	0.943396	163	55	25.2294
NAB2	0	genome.wustl.edu	37	12	57485450	57485450	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	12	57485450	57485450	C	-	DEL	NAB2	ENST00000300131	human	ensembl	74_37	+1	known	frame_shift_del	c.626	p.P211fs	1.000	pfam_NAB_co-repressor_dom	pfam_NAB_co-repressor_dom,pfam_Nab_N,superfamily_SAM/pointed	-	no_errors	NAB2	HGNC	ENSG00000166886				34	0	0	21	6	22.2222
STAT6	0	genome.wustl.edu	37	12	57499094	57499094	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	12	57499094	57499094	G	-	DEL	STAT6	ENST00000300134	human	ensembl	74_37	-1	known	frame_shift_del	c.841	p.Q281fs	1.000	pfam_STAT_TF_DNA-bd,superfamily_p53-like_TF_DNA-bd	pfam_STAT_TF_DNA-bd,pfam_STAT_TF_alpha,pfam_STAT_TF_prot_interaction,pfam_SH2,superfamily_p53-like_TF_DNA-bd,superfamily_STAT_TF_coiled-coil,superfamily_STAT_TF_prot_interaction,smart_STAT_TF_prot_interaction,smart_SH2,pfscan_SH2	-	no_errors	STAT6	HGNC	ENSG00000166888				74	0	0	68	10	12.8205
GLI1	0	genome.wustl.edu	37	12	57860075	57860075	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	12	57860075	57860075	G	-	DEL	GLI1	ENST00000228682	human	ensembl	74_37	+1	known	frame_shift_del	c.815	p.G274fs	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	GLI1	HGNC	ENSG00000111087				253	0	0	207	58	21.8868
MBD6	0	genome.wustl.edu	37	12	57922311	57922311	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	12	57922311	57922311	C	-	DEL	MBD6	ENST00000355673	human	ensembl	74_37	+1	known	frame_shift_del	c.2788	p.P931fs	1.000	NULL	superfamily_DNA-bd_dom,smart_Methyl_CpG_DNA-bd,pfscan_Methyl_CpG_DNA-bd	-	no_errors	MBD6	HGNC	ENSG00000166987				150	0	0	145	27	15.6977
CHD4	0	genome.wustl.edu	37	12	6701715	6701715	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	12	6701715	6701715	A	-	DEL	CHD4	ENST00000309577	human	ensembl	74_37	-1	known	frame_shift_del	c.2792	p.L931fs	1.000	pfam_SNF2_N,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd	pfam_CHD_C2,pfam_DUF1086,pfam_SNF2_N,pfam_CHD_N,pfam_DUF1087,pfam_Znf_PHD-finger,pfam_Chromo_domain,pfam_Helicase_C,pfam_HDA_complex_subunit-2/3,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,superfamily_Chromodomain-like,superfamily_Znf_FYVE_PHD,superfamily_HMG_box_dom,superfamily_Homeodomain-like,smart_Znf_PHD,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Znf_PHD-finger,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD4	HGNC	ENSG00000111642				195	0	0	163	39	19.3069
MYO16	0	genome.wustl.edu	37	13	109318381	109318382	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	13	109318381	109318382	-	T	INS	MYO16	ENST00000356711	human	ensembl	74_37	+1	known	frame_shift_ins	c.110_111	p.Q39fs	0.902:0.028	NULL	pfam_Myosin_head_motor_dom,pfam_Ankyrin_rpt,superfamily_P-loop_NTPase,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Myosin_head_motor_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO16	HGNC	ENSG00000041515				65	0	0	77	10	11.4943
COL4A1	0	genome.wustl.edu	37	13	110859230	110859230	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	13	110859230	110859230	T	-	DEL	COL4A1	ENST00000375820	human	ensembl	74_37	-1	known	frame_shift_del	c.789	p.G264fs	1.000	NULL	pfam_Collagen,pfam_Collagen_VI_NC,superfamily_C-type_lectin_fold,smart_Collagen_VI_NC	-	no_errors	COL4A1	HGNC	ENSG00000187498				74	0	0	96	18	15.7895
RASA3	0	genome.wustl.edu	37	13	114780718	114780720	+	In_Frame_Del	DEL	AGA	AGA	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	AGA	AGA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	13	114780718	114780720	AGA	-	DEL	RASA3	ENST00000334062	human	ensembl	74_37	-1	known	in_frame_del	c.1372_1370	p.F457in_frame_del	1.000:0.995:1.000	pfam_RasGAP,superfamily_Rho_GTPase_activation_prot,smart_RasGAP,pfscan_RasGAP	pfam_RasGAP,pfam_C2_dom,pfam_Znf_Btk_motif,pfam_Pleckstrin_homology,superfamily_Rho_GTPase_activation_prot,superfamily_C2_dom,smart_C2_dom,smart_RasGAP,smart_Pleckstrin_homology,smart_Znf_Btk_motif,pfscan_C2_dom,pfscan_Pleckstrin_homology,pfscan_Znf_Btk_motif,pfscan_RasGAP,prints_Znf_Btk_motif	-	no_errors	RASA3	HGNC	ENSG00000185989				187	0	0	205	23	10.0877
B3GALTL	0	genome.wustl.edu	37	13	31803392	31803392	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	13	31803392	31803392	A	-	DEL	B3GALTL	ENST00000343307	human	ensembl	74_37	+1	known	frame_shift_del	c.231	p.S80fs	0.240	NULL	pfam_Fringe-like	-	no_errors	B3GALTL	HGNC	ENSG00000187676				68	0	0	106	13	10.9244
BRCA2	0	genome.wustl.edu	37	13	32910761	32910762	+	Frame_Shift_Del	DEL	AA	AA	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	13	32910761	32910762	AA	-	DEL	BRCA2	ENST00000380152	human	ensembl	74_37	+1	known	frame_shift_del	c.2269_2270	p.L759fs	0.003:0.007	pirsf_BRCA2	pfam_DNA_recomb/repair_BRCA2_hlx,pfam_BRCA2_repeat,pfam_BRCA2_OB_3,pfam_BRCA2_OB_1,pfam_Tower,superfamily_DNA_recomb/repair_BRCA2_hlx,superfamily_NA-bd_OB-fold,pirsf_BRCA2,pfscan_BRCA2_repeat	-	no_errors	BRCA2	HGNC	ENSG00000139618				114	0	0	105	23	17.9688
SPG20	0	genome.wustl.edu	37	13	36909272	36909272	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	13	36909272	36909272	A	-	DEL	SPG20	ENST00000355182	human	ensembl	74_37	-1	known	frame_shift_del	c.696	p.F232fs	1.000	NULL	pfam_Senescence/spartin,pfam_MIT,smart_MIT	-	no_errors	SPG20	HGNC	ENSG00000133104				107	0	0	149	19	11.3095
CSNK1A1L	0	genome.wustl.edu	37	13	37679145	37679145	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	13	37679145	37679145	T	-	DEL	CSNK1A1L	ENST00000379800	human	ensembl	74_37	-1	known	frame_shift_del	c.249	p.D84fs	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	CSNK1A1L	HGNC	ENSG00000180138				193	0	0	128	63	32.9843
KBTBD6	0	genome.wustl.edu	37	13	41705321	41705322	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	13	41705321	41705322	-	C	INS	KBTBD6	ENST00000379485	human	ensembl	74_37	-1	known	frame_shift_ins	c.1327_1326	p.R442fs	0.947:0.558	pfam_Kelch_1,smart_Kelch_1	pfam_BTB_POZ,pfam_BACK,pfam_Kelch_1,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pfscan_BTB/POZ-like	-	no_errors	KBTBD6	HGNC	ENSG00000165572				168	0	0	174	28	13.8614
DGKH	0	genome.wustl.edu	37	13	42773803	42773803	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	13	42773803	42773803	A	-	DEL	DGKH	ENST00000337343	human	ensembl	74_37	+1	known	frame_shift_del	c.2387	p.K797fs	1.000	pfam_Diacylglycerol_kin_accessory,smart_Diacylglycerol_kin_accessory	pfam_Diacylglycerol_kin_accessory,pfam_Diacylglycerol_kinase_cat_dom,pfam_Pleckstrin_homology,pfam_SAM_2,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_SAM_type1,superfamily_SAM/pointed,smart_Pleckstrin_homology,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Diacylglycerol_kinase_cat_dom,smart_Diacylglycerol_kin_accessory,smart_SAM,pfscan_Pleckstrin_homology,pfscan_SAM,pfscan_Prot_Kinase_C-like_PE/DAG-bd	-	no_errors	DGKH	HGNC	ENSG00000102780				29	0	0	33	10	23.2558
VPS36	0	genome.wustl.edu	37	13	53000038	53000038	+	RNA	DEL	A	A	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	13	53000038	53000038	A	-	DEL	VPS36	ENST00000492650	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	VPS36	HGNC	ENSG00000136100				89	0	0	55	69	55.6452
MYCBP2	0	genome.wustl.edu	37	13	77638831	77638832	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	13	77638831	77638832	-	T	INS	MYCBP2	ENST00000407578	human	ensembl	74_37	-1	known	frame_shift_ins	c.12591_12590	p.N4197fs	1.000:1.000	NULL	pfam_PHR,pfam_Reg_chr_condens,pfam_Filamin/ABP280_repeat-like,superfamily_RCC1/BLIP-II,superfamily_Galactose-bd-like,superfamily_Ig_E-set,superfamily_ARM-type_fold,smart_Znf_RING,pfscan_Filamin/ABP280_repeat-like,pfscan_Znf_RING,pfscan_Reg_chr_condens,prints_Reg_chr_condens	-	no_errors	MYCBP2	HGNC	ENSG00000005810				105	0	0	117	24	17.0213
PPP2R5C	0	genome.wustl.edu	37	14	102378891	102378891	+	RNA	DEL	G	G	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	14	102378891	102378891	G	-	DEL	PPP2R5C	ENST00000556218	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	PPP2R5C	HGNC	ENSG00000078304				21	0	0	25	7	21.875
OR10G3	0	genome.wustl.edu	37	14	22038071	22038071	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	14	22038071	22038071	G	-	DEL	OR10G3	ENST00000303532	human	ensembl	74_37	-1	known	frame_shift_del	c.805	p.L269fs	0.998	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR10G3	HGNC	ENSG00000169208				181	0	0	163	30	15.544
PABPN1	0	genome.wustl.edu	37	14	23794494	23794494	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	14	23794494	23794494	A	-	DEL	PABPN1	ENST00000216727	human	ensembl	74_37	+1	known	frame_shift_del	c.920	p.*307fs	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	PABPN1	HGNC	ENSG00000100836				153	0	0	102	34	25
STXBP6	0	genome.wustl.edu	37	14	25325269	25325269	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	14	25325269	25325269	A	-	DEL	STXBP6	ENST00000323944	human	ensembl	74_37	-1	known	frame_shift_del	c.324	p.F108fs	0.998	NULL	pfam_Synaptobrevin,pfscan_Synaptobrevin	-	no_errors	STXBP6	HGNC	ENSG00000168952				90	0	0	60	21	25.9259
MIPOL1	0	genome.wustl.edu	37	14	37754647	37754647	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	14	37754647	37754647	A	-	DEL	MIPOL1	ENST00000327441	human	ensembl	74_37	+1	known	frame_shift_del	c.618	p.V208fs	0.999	NULL	NULL	-	no_errors	MIPOL1	HGNC	ENSG00000151338				164	0	0	116	37	24.183
MIA2	0	genome.wustl.edu	37	14	39703369	39703370	+	Frame_Shift_Del	DEL	AA	AA	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	14	39703369	39703370	AA	-	DEL	MIA2	ENST00000556784	human	ensembl	74_37	+1	putative	frame_shift_del	c.51_52	p.K18fs	0.698:0.720	NULL	pfam_SH3_2,superfamily_SH3_domain	-	no_errors	MIA2	HGNC	ENSG00000150526				127	0	0	95	29	23.3871
MAP4K5	0	genome.wustl.edu	37	14	50930796	50930796	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	14	50930796	50930796	T	-	DEL	MAP4K5	ENST00000013125	human	ensembl	74_37	-1	known	frame_shift_del	c.793	p.R265fs	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Citron,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Citron,pfscan_Prot_kinase_dom	-	no_errors	MAP4K5	HGNC	ENSG00000012983				8	0	0	4	3	42.8571
TRIM9	0	genome.wustl.edu	37	14	51561516	51561516	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	14	51561516	51561516	G	-	DEL	TRIM9	ENST00000338969	human	ensembl	74_37	-1	known	frame_shift_del	c.142	p.Q48fs	1.000	smart_Znf_RING	pfam_SPRY_rcpt,pfam_Fibronectin_type3,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,superfamily_Znf_FYVE_PHD,smart_Znf_RING,smart_Znf_B-box,smart_Bbox_C,smart_Fibronectin_type3,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Fibronectin_type3,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM9	HGNC	ENSG00000100505				35	0	0	38	9	19.1489
DCAF5	0	genome.wustl.edu	37	14	69588976	69588976	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	14	69588976	69588976	A	-	DEL	DCAF5	ENST00000341516	human	ensembl	74_37	-1	known	frame_shift_del	c.316	p.C106fs	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DCAF5	HGNC	ENSG00000139990				167	0	0	134	34	20.2381
ENSG00000258891	0	genome.wustl.edu	37	14	74363249	74363249	+	RNA	DEL	T	T	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	14	74363249	74363249	T	-	DEL	ENSG00000258891	ENST00000554009	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	RP5-1021I20.5	Clone_based_vega_gene	ENSG00000258891				166	1	0.598802	132	36	21.4286
VRTN	0	genome.wustl.edu	37	14	74824463	74824463	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	14	74824463	74824463	G	-	DEL	VRTN	ENST00000256362	human	ensembl	74_37	+1	known	frame_shift_del	c.977	p.G328fs	0.994	NULL	pfam_Transposase_8	-	no_errors	VRTN	HGNC	ENSG00000133980				155	0	0	141	18	11.3208
COX8C	0	genome.wustl.edu	37	14	93814398	93814398	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	14	93814398	93814398	T	-	DEL	COX8C	ENST00000342144	human	ensembl	74_37	+1	known	frame_shift_del	c.151	p.F52fs	0.000	pfam_Cyt_c_oxidase_su8,superfamily_Cyt_c_oxidase_su8	pfam_Cyt_c_oxidase_su8,superfamily_Cyt_c_oxidase_su8	-	no_errors	COX8C	HGNC	ENSG00000187581				103	0	0	91	24	20.8696
ATG2B	0	genome.wustl.edu	37	14	96794874	96794874	+	Splice_Site	DEL	T	T	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	14	96794874	96794874	T	-	DEL	ATG2B	ENST00000359933	human	ensembl	74_37	-1	known	splice_site_del	c.1975-2	e14-2	1.000	-	-	-	no_errors	ATG2B	HGNC	ENSG00000066739				75	0	0	56	9	13.8462
DNM1P46	0	genome.wustl.edu	37	15	100332612	100332612	+	RNA	DEL	G	G	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	15	100332612	100332612	G	-	DEL	DNM1P46	ENST00000341853	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	DNM1P46	HGNC	ENSG00000182397				134	0	0	99	22	18.1818
SNRPA1	0	genome.wustl.edu	37	15	101833280	101833280	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	15	101833280	101833280	A	-	DEL	SNRPA1	ENST00000254193	human	ensembl	74_37	-1	known	frame_shift_del	c.180	p.P61fs	0.998	NULL	smart_U2A'_phosphoprotein32A_C	-	no_errors	SNRPA1	HGNC	ENSG00000131876				51	0	0	53	9	14.5161
CASC5	0	genome.wustl.edu	37	15	40917332	40917333	+	Frame_Shift_Del	DEL	AA	AA	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	15	40917332	40917333	AA	-	DEL	CASC5	ENST00000346991	human	ensembl	74_37	+1	known	frame_shift_del	c.4948_4949	p.K1651fs	0.007:0.000	NULL	NULL	-	no_errors	CASC5	HGNC	ENSG00000137812				151	0	0	116	50	30.1205
MGA	0	genome.wustl.edu	37	15	42019391	42019392	+	Frame_Shift_Del	DEL	AG	AG	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	15	42019391	42019392	AG	-	DEL	MGA	ENST00000219905	human	ensembl	74_37	+1	known	frame_shift_del	c.3444_3445	p.E1149fs	0.997:1.000	NULL	pfam_TF_T-box,pfam_bHLH_dom,superfamily_p53-like_TF_DNA-bd,superfamily_bHLH_dom,smart_TF_T-box,smart_bHLH_dom,pfscan_bHLH_dom,pfscan_TF_T-box,prints_TF_T-box	-	no_errors	MGA	HGNC	ENSG00000174197				45	0	0	33	12	26.6667
GANC	0	genome.wustl.edu	37	15	42632112	42632113	+	Splice_Site	INS	-	-	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	15	42632112	42632113	-	A	INS	GANC	ENST00000318010	human	ensembl	74_37	+1	known	splice_site_ins	c.2087+2_2087+1	e17+2	1.000:0.998	-	-	-	no_errors	GANC	HGNC	ENSG00000214013				109	0	0	68	18	20.9302
HYPK	0	genome.wustl.edu	37	15	44094053	44094053	+	RNA	DEL	T	T	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	15	44094053	44094053	T	-	DEL	HYPK	ENST00000497142	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.011	-	-	-	no_errors	HYPK	HGNC	ENSG00000242028				33	0	0	28	8	22.2222
EIF3J	0	genome.wustl.edu	37	15	44843099	44843099	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	15	44843099	44843099	A	-	DEL	EIF3J	ENST00000261868	human	ensembl	74_37	+1	known	frame_shift_del	c.173	p.E61fs	1.000	pfam_eIF3j	pfam_eIF3j	-	no_errors	EIF3J	HGNC	ENSG00000104131				148	0	0	106	39	26.8966
B2M	0	genome.wustl.edu	37	15	45003781	45003782	+	Frame_Shift_Del	DEL	CT	CT	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	CT	CT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	15	45003781	45003782	CT	-	DEL	B2M	ENST00000544417	human	ensembl	74_37	+1	known	frame_shift_del	c.37_38	p.L15fs	0.000:0.000	NULL	pfam_Ig_C1-set,smart_Ig_C1-set,pfscan_Ig-like_dom	-	no_errors	B2M	HGNC	ENSG00000166710				79	0	0	69	11	13.75
ENSG00000259241	0	genome.wustl.edu	37	15	51987960	51987961	+	RNA	DEL	AA	AA	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	15	51987960	51987961	AA	-	DEL	ENSG00000259241	ENST00000559918	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.006:0.012	-	-	-	no_errors	RP11-313P18.2	Clone_based_vega_gene	ENSG00000259241				21	0	0	16	18	52.9412
RNF111	0	genome.wustl.edu	37	15	59376343	59376343	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	15	59376343	59376343	C	-	DEL	RNF111	ENST00000434298	human	ensembl	74_37	+1	known	frame_shift_del	c.2340	p.P782fs	0.993	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF111	HGNC	ENSG00000157450				107	0	0	36	15	29.4118
IGDCC4	0	genome.wustl.edu	37	15	65678319	65678319	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	15	65678319	65678319	G	-	DEL	IGDCC4	ENST00000352385	human	ensembl	74_37	-1	novel	frame_shift_del	c.3030	p.S1011fs	0.001	NULL	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	IGDCC4	HGNC	ENSG00000103742				16	0	0	25	2	7.40741
SCAMP2	0	genome.wustl.edu	37	15	75140995	75140996	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	15	75140995	75140996	-	A	INS	SCAMP2	ENST00000268099	human	ensembl	74_37	-1	known	frame_shift_ins	c.680_679	p.C227fs	1.000:1.000	pfam_SCAMP	pfam_SCAMP	-	no_errors	SCAMP2	HGNC	ENSG00000140497				67	0	0	45	11	19.6429
C15orf39	0	genome.wustl.edu	37	15	75499804	75499804	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	15	75499804	75499804	C	-	DEL	C15orf39	ENST00000360639	human	ensembl	74_37	+1	known	frame_shift_del	c.1415	p.P474fs	0.848	NULL	NULL	-	no_errors	C15orf39	HGNC	ENSG00000167173				115	1	0.862069	77	18	18.9474
CSPG4	0	genome.wustl.edu	37	15	75974705	75974705	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	15	75974705	75974705	G	-	DEL	CSPG4	ENST00000308508	human	ensembl	74_37	-1	known	frame_shift_del	c.4879	p.Q1627fs	0.959	NULL	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,pfscan_Laminin_G	-	no_errors	CSPG4	HGNC	ENSG00000173546				86	0	0	73	11	13.0952
AKAP13	0	genome.wustl.edu	37	15	86287017	86287017	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	15	86287017	86287017	A	-	DEL	AKAP13	ENST00000361243	human	ensembl	74_37	+1	known	frame_shift_del	c.8365	p.K2791fs	0.995	NULL	pfam_DH-domain,pfam_Pleckstrin_homology,superfamily_DH-domain,superfamily_Ankyrin_rpt-contain_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_DH-domain	-	no_errors	AKAP13	HGNC	ENSG00000170776				76	0	0	62	7	10.1449
SEMA4B	0	genome.wustl.edu	37	15	90771824	90771824	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	15	90771824	90771824	C	-	DEL	SEMA4B	ENST00000332496	human	ensembl	74_37	+1	known	frame_shift_del	c.2463	p.R823fs	1.000	NULL	pfam_Semap_dom,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,pfscan_Semap_dom	-	no_errors	SEMA4B	HGNC	ENSG00000185033				75	0	0	57	13	18.5714
MKL2	0	genome.wustl.edu	37	16	14328066	14328066	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	16	14328066	14328066	C	-	DEL	MKL2	ENST00000341243	human	ensembl	74_37	+1	known	frame_shift_del	c.724	p.P243fs	0.931	NULL	pfam_RPEL_repeat,pfam_SAP_dom,smart_RPEL_repeat,smart_SAP_dom,pfscan_RPEL_repeat,pfscan_SAP_dom	-	no_errors	MKL2	HGNC	ENSG00000186260				197	0	0	144	40	21.7391
BFAR	0	genome.wustl.edu	37	16	14749040	14749041	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	16	14749040	14749041	-	C	INS	BFAR	ENST00000261658	human	ensembl	74_37	+1	known	frame_shift_ins	c.756_757	p.Q254fs	1.000:1.000	NULL	pfam_SAM_type1,pfam_Znf_C3HC4_RING-type,pfam_SAM_2,superfamily_SAM/pointed,smart_Znf_RING,smart_SAM,pfscan_SAM,pfscan_Znf_RING	-	no_errors	BFAR	HGNC	ENSG00000103429				130	0	0	120	23	16.0839
MYH11	0	genome.wustl.edu	37	16	15802687	15802687	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	16	15802687	15802687	G	-	DEL	MYH11	ENST00000452625	human	ensembl	74_37	-1	known	frame_shift_del	c.5819	p.P1940fs	1.000	NULL	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,superfamily_t-SNARE,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH11	HGNC	ENSG00000133392				20	0	0	15	7	31.8182
FOPNL	0	genome.wustl.edu	37	16	15978038	15978038	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	16	15978038	15978038	T	-	DEL	FOPNL	ENST00000255759	human	ensembl	74_37	-1	known	frame_shift_del	c.53	p.K18fs	0.435	NULL	pfam_FOP_dimerisation-dom_N,smart_LisH_dimerisation,pfscan_LisH_dimerisation	-	no_errors	FOPNL	HGNC	ENSG00000133393				117	0	0	94	21	18.2609
GTF3C1	0	genome.wustl.edu	37	16	27549213	27549214	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	16	27549213	27549214	-	T	INS	GTF3C1	ENST00000356183	human	ensembl	74_37	-1	known	frame_shift_ins	c.644_643	p.I215fs	0.800:0.827	pfam_TFIIIC_Bblock-bd	pfam_TFIIIC_Bblock-bd	-	no_errors	GTF3C1	HGNC	ENSG00000077235				75	0	0	77	17	18.0851
SRRM2	0	genome.wustl.edu	37	16	2821440	2821441	+	RNA	DEL	GT	GT	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	GT	GT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	16	2821440	2821441	GT	-	DEL	SRRM2	ENST00000573583	human	ensembl	74_37	+1	putative	rna	NULL	NULL	0.180:0.072	-	-	-	no_errors	SRRM2	HGNC	ENSG00000167978				114	0	0	108	35	24.4755
FLYWCH1	0	genome.wustl.edu	37	16	2983745	2983745	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	16	2983745	2983745	G	-	DEL	FLYWCH1	ENST00000399667	human	ensembl	74_37	+1	known	frame_shift_del	c.1278	p.G428fs	0.959	pfam_Znf_FLYWCH	pfam_Znf_FLYWCH	-	no_errors	FLYWCH1	HGNC	ENSG00000059122				34	0	0	25	5	16.6667
SRCAP	0	genome.wustl.edu	37	16	30736370	30736371	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	16	30736370	30736371	-	C	INS	SRCAP	ENST00000262518	human	ensembl	74_37	+1	known	frame_shift_ins	c.5625_5626	p.P1878fs	1.000:1.000	NULL	pfam_SNF2_N,pfam_Helicase/SANT-assoc_DNA-bd,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_HAS_subgr,smart_Helicase_ATP-bd,smart_Helicase_C,smart_AT_hook_DNA-bd_motif,pfscan_Helicase/SANT-assoc_DNA-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,prints_AT_hook-like	-	no_errors	SRCAP	HGNC	ENSG00000080603				240	2	0.826446	206	24	10.4348
CREBBP	0	genome.wustl.edu	37	16	3817721	3817721	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	16	3817721	3817721	T	-	DEL	CREBBP	ENST00000262367	human	ensembl	74_37	-1	known	frame_shift_del	c.3250	p.I1084fs	1.000	superfamily_Bromodomain,smart_Bromodomain	pfam_Histone_H3-K56_AcTrfase_RTT109,pfam_Nuc_rcpt_coact_CREBbp,pfam_KIX_dom,pfam_DUF902_CREBbp,pfam_Znf_TAZ,pfam_Bromodomain,pfam_Znf_ZZ,superfamily_Bromodomain,superfamily_Znf_TAZ,superfamily_KIX_dom,superfamily_Nuc_rcpt_coact,superfamily_Znf_FYVE_PHD,smart_Znf_TAZ,smart_Bromodomain,smart_Znf_ZZ,pfscan_KIX_dom,pfscan_Znf_TAZ,pfscan_Znf_ZZ,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	CREBBP	HGNC	ENSG00000005339				224	1	0.444444	204	57	21.8391
ORC6	0	genome.wustl.edu	37	16	46729524	46729525	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	16	46729524	46729525	-	A	INS	ORC6	ENST00000219097	human	ensembl	74_37	+1	known	frame_shift_ins	c.500_501	p.A170fs	0.985:0.514	NULL	pfam_ORC6	-	no_errors	ORC6	HGNC	ENSG00000091651				65	0	0	59	5	7.8125
CHD9	0	genome.wustl.edu	37	16	53263000	53263000	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	16	53263000	53263000	T	-	DEL	CHD9	ENST00000398510	human	ensembl	74_37	+1	known	frame_shift_del	c.2274	p.F760fs	0.999	NULL	pfam_SNF2_N,pfam_BRK_domain,pfam_Chromo_domain,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,smart_BRK_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD9	HGNC	ENSG00000177200				15	0	0	12	6	33.3333
RPGRIP1L	0	genome.wustl.edu	37	16	53679760	53679760	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	16	53679760	53679760	A	-	DEL	RPGRIP1L	ENST00000379925	human	ensembl	74_37	-1	known	frame_shift_del	c.2460	p.F820fs	1.000	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	pfam_DUF3250,pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	-	no_errors	RPGRIP1L	HGNC	ENSG00000103494				283	1	0.352113	203	79	28.0142
FHOD1	0	genome.wustl.edu	37	16	67267852	67267852	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	16	67267852	67267852	G	-	DEL	FHOD1	ENST00000258201	human	ensembl	74_37	-1	known	frame_shift_del	c.1754	p.P585fs	1.000	NULL	pfam_FH2_Formin,superfamily_ARM-type_fold,smart_FH2_Formin	-	no_errors	FHOD1	HGNC	ENSG00000135723				23	0	0	15	14	48.2759
NFAT5	0	genome.wustl.edu	37	16	69726863	69726863	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	16	69726863	69726863	A	-	DEL	NFAT5	ENST00000432919	human	ensembl	74_37	+1	known	frame_shift_del	c.3135	p.S1047fs	0.894	NULL	pfam_RHD,superfamily_p53-like_TF_DNA-bd,superfamily_Ig_E-set,smart_IPT,pfscan_RHD,prints_NFAT	-	no_errors	NFAT5	HGNC	ENSG00000102908				195	0	0	244	15	5.79151
AP1G1	0	genome.wustl.edu	37	16	71803440	71803440	+	Splice_Site	DEL	A	A	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	16	71803440	71803440	A	-	DEL	AP1G1	ENST00000423132	human	ensembl	74_37	-1	known	splice_site_del	c.643-1	e6-1	0.996	-	-	-	no_errors	AP1G1	HGNC	ENSG00000166747				41	0	0	23	9	28.125
ADAMTS18	0	genome.wustl.edu	37	16	77356311	77356311	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	16	77356311	77356311	A	-	DEL	ADAMTS18	ENST00000282849	human	ensembl	74_37	-1	known	frame_shift_del	c.2085	p.F695fs	0.998	NULL	pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS18	HGNC	ENSG00000140873				183	0	0	150	38	20.2128
PLCG2	0	genome.wustl.edu	37	16	81934374	81934376	+	In_Frame_Del	DEL	ATC	ATC	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	ATC	ATC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	16	81934374	81934376	ATC	-	DEL	PLCG2	ENST00000359376	human	ensembl	74_37	+1	known	in_frame_del	c.1351_1353	p.I453in_frame_del	1.000:1.000:1.000	pfam_PLipase_C_PInositol-sp_X_dom,superfamily_PLC-like_Pdiesterase_TIM-brl,smart_PLipase_C_PInositol-sp_X_dom,pirsf_PLC-gamma,pfscan_PLipase_C_PInositol-sp_X_dom,prints_Pinositol_PLipase_C	pfam_PLipase_C_PInositol-sp_X_dom,pfam_SH2,pfam_PLipase_C_Pinositol-sp_Y,pfam_SH3_domain,pfam_C2_dom,pfam_PLipase_C_EF-hand-like,pfam_SH3_2,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_dom,superfamily_SH3_domain,smart_Pleckstrin_homology,smart_PLipase_C_PInositol-sp_X_dom,smart_SH2,smart_SH3_domain,smart_PLipase_C_Pinositol-sp_Y,smart_C2_dom,pirsf_PLC-gamma,pfscan_C2_dom,pfscan_Pleckstrin_homology,pfscan_SH2,pfscan_SH3_domain,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y,prints_Pinositol_PLipase_C,prints_SH2,prints_SH3_domain	-	no_errors	PLCG2	HGNC	ENSG00000197943				45	0	0	34	8	19.0476
ZC3H18	0	genome.wustl.edu	37	16	88691141	88691141	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	16	88691141	88691141	C	-	DEL	ZC3H18	ENST00000301011	human	ensembl	74_37	+1	known	frame_shift_del	c.2030	p.R680fs	0.568	NULL	smart_Znf_CCCH	-	no_errors	ZC3H18	HGNC	ENSG00000158545				35	0	0	46	3	6.12245
TCF25	0	genome.wustl.edu	37	16	89951020	89951020	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	16	89951020	89951020	A	-	DEL	TCF25	ENST00000263346	human	ensembl	74_37	+1	known	frame_shift_del	c.385	p.K131fs	1.000	NULL	pfam_TCF25	-	no_errors	TCF25	HGNC	ENSG00000141002				44	0	0	42	8	16
PRPF8	0	genome.wustl.edu	37	17	1579567	1579567	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	17	1579567	1579567	G	-	DEL	PRPF8	ENST00000304992	human	ensembl	74_37	-1	known	frame_shift_del	c.2486	p.P829fs	1.000	NULL	pfam_PROCN,pfam_PRP8_domainIV,pfam_Prp8_U6-snRNA-bd,pfam_PRO8NT,pfam_Prp8_U5-snRNA-bd,pfam_PROCT,pfam_RRM_spliceosomal_PrP8,pfam_JAB_MPN_dom,superfamily_Cupredoxin,superfamily_Histone-fold,smart_JAB_MPN_dom	-	no_errors	PRPF8	HGNC	ENSG00000174231				145	0	0	115	33	22.2973
RAI1	0	genome.wustl.edu	37	17	17696716	17696716	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	17	17696716	17696716	C	-	DEL	RAI1	ENST00000353383	human	ensembl	74_37	+1	known	frame_shift_del	c.454	p.S154fs	1.000	NULL	smart_Znf_PHD	-	no_errors	RAI1	HGNC	ENSG00000108557				99	0	0	81	15	15.625
USP32P2	0	genome.wustl.edu	37	17	18418850	18418850	+	RNA	DEL	C	C	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	17	18418850	18418850	C	-	DEL	USP32P2	ENST00000412260	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.013	-	-	-	no_errors	USP32P2	HGNC	ENSG00000233327				41	0	0	15	14	48.2759
EPN2	0	genome.wustl.edu	37	17	19216468	19216468	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	17	19216468	19216468	C	-	DEL	EPN2	ENST00000314728	human	ensembl	74_37	+1	known	frame_shift_del	c.1023	p.S343fs	0.204	NULL	pfam_Epsin_dom_N,pfam_ANTH_dom,superfamily_ENTH_VHS,smart_Epsin-like_N,smart_Ubiquitin-int_motif,pfscan_Epsin-like_N,pfscan_Ubiquitin-int_motif	-	no_errors	EPN2	HGNC	ENSG00000072134				139	0	0	112	27	19.4245
UBBP4	0	genome.wustl.edu	37	17	21731489	21731489	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	17	21731489	21731489	C	-	DEL	UBBP4	ENST00000578713	human	ensembl	74_37	+1	putative	frame_shift_del	c.564	p.D191fs	1.000	pfam_Ubiquitin_dom,pfam_Rad60/SUMO_like,smart_Ubiquitin_dom,pfscan_Ubiquitin_supergroup	pfam_Ubiquitin_dom,pfam_Rad60/SUMO_like,smart_Ubiquitin_dom,pfscan_Ubiquitin_supergroup,prints_Ubiquitin	-	no_errors	UBBP4	HGNC	ENSG00000263563				46	0	0	52	15	22.3881
SGSM2	0	genome.wustl.edu	37	17	2279017	2279019	+	In_Frame_Del	DEL	GAG	GAG	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	GAG	GAG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	17	2279017	2279019	GAG	-	DEL	SGSM2	ENST00000268989	human	ensembl	74_37	+1	known	in_frame_del	c.2332_2334	p.E779in_frame_del	1.000:1.000:0.986	superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	pfam_Run,pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Run,smart_Rab-GTPase-TBC_dom,pfscan_Run,pfscan_Rab-GTPase-TBC_dom	-	no_errors	SGSM2	HGNC	ENSG00000141258				115	0	0	120	19	13.6691
PAFAH1B1	0	genome.wustl.edu	37	17	2570628	2570628	+	RNA	DEL	A	A	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	17	2570628	2570628	A	-	DEL	PAFAH1B1	ENST00000397193	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.007	-	-	-	no_errors	PAFAH1B1	HGNC	ENSG00000007168				13	0	0	12	2	14.2857
KIAA0100	0	genome.wustl.edu	37	17	26966334	26966334	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	17	26966334	26966334	T	-	DEL	KIAA0100	ENST00000528896	human	ensembl	74_37	-1	known	frame_shift_del	c.1228	p.R410fs	0.999	pfam_FMP27_N	pfam_FMP27_C,pfam_FMP27_N,pfam_FMP27_GFWDK_dom	-	no_errors	KIAA0100	HGNC	ENSG00000007202				146	0	0	115	44	27.673
CPD	0	genome.wustl.edu	37	17	28706682	28706683	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	17	28706682	28706683	-	C	INS	CPD	ENST00000225719	human	ensembl	74_37	+1	known	frame_shift_ins	c.684_685	p.A230fs	0.814:0.847	pfam_Peptidase_M14,smart_Peptidase_M14	pfam_Peptidase_M14,superfamily_CarboxyPept-like_regulatory,smart_Peptidase_M14,prints_Peptidase_M14	-	no_errors	CPD	HGNC	ENSG00000108582				16	0	0	13	8	38.0952
NF1	0	genome.wustl.edu	37	17	29486057	29486057	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	17	29486057	29486057	T	-	DEL	NF1	ENST00000358273	human	ensembl	74_37	+1	known	frame_shift_del	c.234	p.L79fs	1.000	NULL	pfam_RasGAP,superfamily_Rho_GTPase_activation_prot,superfamily_ARM-type_fold,superfamily_CRAL-TRIO_dom,smart_RasGAP,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom,pfscan_RasGAP	-	no_errors	NF1	HGNC	ENSG00000196712				101	0	0	86	26	23.2143
DDX52	0	genome.wustl.edu	37	17	35986851	35986851	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	17	35986851	35986851	G	-	DEL	DDX52	ENST00000349699	human	ensembl	74_37	-1	known	frame_shift_del	c.915	p.G306fs	0.996	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX52	HGNC	ENSG00000141141				133	0	0	129	23	15.1316
AOC3	0	genome.wustl.edu	37	17	41004278	41004279	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	17	41004278	41004279	-	C	INS	AOC3	ENST00000308423	human	ensembl	74_37	+1	known	frame_shift_ins	c.918_919	p.P309fs	0.002:0.003	superfamily_Cu_amine_oxidase_C,superfamily_Cu_amine_oxidase_N-reg	pfam_Cu_amine_oxidase_C,pfam_Cu_amine_oxidase_N2,pfam_Cu_amine_oxidase_N3,superfamily_Cu_amine_oxidase_C,superfamily_Cu_amine_oxidase_N-reg,prints_Cu_amine_oxidase	-	no_errors	AOC3	HGNC	ENSG00000131471				59	0	0	33	9	21.4286
BRCA1	0	genome.wustl.edu	37	17	41246532	41246532	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	17	41246532	41246532	T	-	DEL	BRCA1	ENST00000471181	human	ensembl	74_37	-1	known	frame_shift_del	c.1016	p.K339fs	0.000	pirsf_BRCA1	pirsf_BRCA1,pfam_BRCT_dom,pfam_Znf_C3HC4_RING-type,superfamily_BRCT_dom,smart_Znf_RING,smart_BRCT_dom,prints_BRCA1,pfscan_BRCT_dom,pfscan_Znf_RING	-	no_errors	BRCA1	HGNC	ENSG00000012048				384	1	0.25974	346	86	19.9074
TMUB2	0	genome.wustl.edu	37	17	42266704	42266704	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	17	42266704	42266704	G	-	DEL	TMUB2	ENST00000538716	human	ensembl	74_37	+1	known	frame_shift_del	c.350	p.G118fs	1.000	NULL	pfam_Ubiquitin_dom,smart_Ubiquitin_dom,pfscan_Ubiquitin_supergroup	-	no_errors	TMUB2	HGNC	ENSG00000168591				94	0	0	69	16	18.8235
MYBBP1A	0	genome.wustl.edu	37	17	4444821	4444832	+	In_Frame_Del	DEL	CTGCGCCTTGGT	CTGCGCCTTGGT	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	CTGCGCCTTGGT	CTGCGCCTTGGT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	17	4444821	4444832	CTGCGCCTTGGT	-	DEL	MYBBP1A	ENST00000381556	human	ensembl	74_37	-1	known	in_frame_del	c.3234_3223	p.TKAQ1075in_frame_del	0.844:0.828:0.788:0.003:0.005:0.004:0.029:0.363:0.426:0.442:0.360:0.389	superfamily_ARM-type_fold	pfam_DNA_pol_V,superfamily_ARM-type_fold	-	no_errors	MYBBP1A	HGNC	ENSG00000132382				216	0	0	160	17	9.60452
ITGB3	0	genome.wustl.edu	37	17	45367089	45367089	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	17	45367089	45367089	A	-	DEL	ITGB3	ENST00000559488	human	ensembl	74_37	+1	known	frame_shift_del	c.982	p.N329fs	1.000	pirsf_Integrin_bsu,pfam_Integrin_bsu_N,smart_Integrin_bsu_N,prints_Integrin_bsu	pirsf_Integrin_bsu,pfam_Integrin_bsu_N,pfam_Integrin_bsu_cyt_dom,pfam_Integrin_bsu_tail,pfam_EGF_extracell,superfamily_Integrin_bsu_tail,superfamily_Plexin-like_fold,smart_Plexin-like_fold,smart_Integrin_bsu_N,prints_Integrin_bsu	-	no_errors	ITGB3	HGNC	ENSG00000259207				187	0	0	161	44	21.4634
CHAD	0	genome.wustl.edu	37	17	48542691	48542692	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	17	48542691	48542692	-	G	INS	CHAD	ENST00000258969	human	ensembl	74_37	-1	known	frame_shift_ins	c.1048_1047	p.T349fs	0.999:0.982	NULL	pfam_Leu-rich_rpt,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	CHAD	HGNC	ENSG00000136457				59	0	0	43	16	27.1186
ABCC3	0	genome.wustl.edu	37	17	48746874	48746875	+	Frame_Shift_Del	DEL	AG	AG	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	17	48746874	48746875	AG	-	DEL	ABCC3	ENST00000285238	human	ensembl	74_37	+1	known	frame_shift_del	c.2226_2227	p.E743fs	0.739:1.000	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like,tigrfam_Multidrug-R_assoc	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC1_TM_dom,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom,tigrfam_Multidrug-R_assoc	-	no_errors	ABCC3	HGNC	ENSG00000108846				113	0	0	109	33	23.2394
NLRP1	0	genome.wustl.edu	37	17	5462268	5462268	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	17	5462268	5462268	T	-	DEL	NLRP1	ENST00000572272	human	ensembl	74_37	-1	known	frame_shift_del	c.1748	p.K583fs	0.000	pfscan_NACHT_NTPase	pfam_CARD,pfam_DAPIN,pfam_Leu-rich_rpt,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_CARD,pfscan_DAPIN,prints_Disease_R	-	no_errors	NLRP1	HGNC	ENSG00000091592				95	0	0	58	18	23.6842
LPO	0	genome.wustl.edu	37	17	56324946	56324946	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	17	56324946	56324946	G	-	DEL	LPO	ENST00000262290	human	ensembl	74_37	+1	known	frame_shift_del	c.272	p.E92fs	1.000	NULL	pfam_Haem_peroxidase_animal,superfamily_Haem_peroxidase,pfscan_Haem_peroxidase_animal,prints_Haem_peroxidase_animal_subgr	-	no_errors	LPO	HGNC	ENSG00000167419				142	0	0	107	19	15.0794
RNF43	0	genome.wustl.edu	37	17	56435161	56435161	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	17	56435161	56435161	C	-	DEL	RNF43	ENST00000407977	human	ensembl	74_37	-1	known	frame_shift_del	c.1976	p.G659fs	0.900	NULL	pfam_Znf_C3HC4_RING-type,superfamily_PAS,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF43	HGNC	ENSG00000108375				189	0	0	176	58	24.7863
RNF43	0	genome.wustl.edu	37	17	56448298	56448298	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	17	56448298	56448298	G	-	DEL	RNF43	ENST00000407977	human	ensembl	74_37	-1	known	frame_shift_del	c.349	p.R117fs	1.000	superfamily_PAS	pfam_Znf_C3HC4_RING-type,superfamily_PAS,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF43	HGNC	ENSG00000108375				85	0	0	87	7	7.44681
PRR11	0	genome.wustl.edu	37	17	57247171	57247171	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	17	57247171	57247171	A	-	DEL	PRR11	ENST00000262293	human	ensembl	74_37	+1	known	frame_shift_del	c.58	p.E23fs	0.749	NULL	NULL	-	no_errors	PRR11	HGNC	ENSG00000068489				96	0	0	82	21	20.3883
RPS6KB1	0	genome.wustl.edu	37	17	58024089	58024090	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	17	58024089	58024090	-	A	INS	RPS6KB1	ENST00000225577	human	ensembl	74_37	+1	known	frame_shift_ins	c.1518_1519	p.Q508fs	1.000:1.000	pirsf_Ribosomal_S6_kinase	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Ribosomal_S6_kinase,pfscan_Prot_kinase_dom	-	no_errors	RPS6KB1	HGNC	ENSG00000108443				114	0	0	95	24	20.1681
CA4	0	genome.wustl.edu	37	17	58234015	58234017	+	In_Frame_Del	DEL	CTT	CTT	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	CTT	CTT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	17	58234015	58234017	CTT	-	DEL	CA4	ENST00000300900	human	ensembl	74_37	+1	known	in_frame_del	c.207_209	p.F72in_frame_del	0.551:0.712:0.713	pfam_Carbonic_anhydrase_a,superfamily_Carbonic_anhydrase_a,pfscan_Carbonic_anhydrase_a	pfam_Carbonic_anhydrase_a,superfamily_Carbonic_anhydrase_a,pfscan_Carbonic_anhydrase_a	-	no_errors	CA4	HGNC	ENSG00000167434				122	0	0	110	21	16.0305
MARCH10	0	genome.wustl.edu	37	17	60814349	60814349	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	17	60814349	60814349	C	-	DEL	MARCH10	ENST00000311269	human	ensembl	74_37	-1	known	frame_shift_del	c.880	p.E294fs	0.867	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING-CH	-	no_errors	MARCH10	HGNC	ENSG00000173838				649	0	0	512	139	21.3518
FTSJ3	0	genome.wustl.edu	37	17	61897648	61897650	+	In_Frame_Del	DEL	CTT	CTT	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	CTT	CTT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	17	61897648	61897650	CTT	-	DEL	FTSJ3	ENST00000427159	human	ensembl	74_37	-1	known	in_frame_del	c.2223_2221	p.K741in_frame_del	1.000:1.000:1.000	pfam_rRNA_MeTfrase_Spb1_C	pfam_rRNA_MeTfrase_Spb1_C,pfam_rRNA_MeTrfase_FtsJ_dom,pfam_rRNA_MeTfrase_Spb1_DUF3381	-	no_errors	FTSJ3	HGNC	ENSG00000108592				229	0	0	171	42	19.7183
BPTF	0	genome.wustl.edu	37	17	65899951	65899951	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	17	65899951	65899951	A	-	DEL	BPTF	ENST00000321892	human	ensembl	74_37	+1	known	frame_shift_del	c.2968	p.E993fs	0.993	NULL	pfam_Bromodomain,pfam_DDT_dom,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_DDT_dom_subgr,smart_Znf_PHD,smart_Bromodomain,pfscan_Znf_PHD-finger,pfscan_DDT_dom_superfamily,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BPTF	HGNC	ENSG00000171634				37	0	0	56	11	16.4179
ABCA6	0	genome.wustl.edu	37	17	67125767	67125767	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	17	67125767	67125767	A	-	DEL	ABCA6	ENST00000284425	human	ensembl	74_37	-1	known	frame_shift_del	c.917	p.L306fs	1.000	NULL	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA6	HGNC	ENSG00000154262				118	0	0	85	16	15.8416
ACAP1	0	genome.wustl.edu	37	17	7249758	7249759	+	Frame_Shift_Del	DEL	CT	CT	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	CT	CT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	17	7249758	7249759	CT	-	DEL	ACAP1	ENST00000158762	human	ensembl	74_37	+1	known	frame_shift_del	c.955_956	p.C320fs	1.000:1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_ArfGAP,pfam_Pleckstrin_homology,superfamily_Ankyrin_rpt-contain_dom,smart_Pleckstrin_homology,smart_ArfGAP,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Pleckstrin_homology,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_ArfGAP,prints_ArfGAP	-	no_errors	ACAP1	HGNC	ENSG00000072818				166	0	0	120	25	17.2414
FOXJ1	0	genome.wustl.edu	37	17	74136150	74136150	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	17	74136150	74136150	G	-	DEL	FOXJ1	ENST00000322957	human	ensembl	74_37	-1	known	frame_shift_del	c.327	p.D110fs	0.994	NULL	pfam_TF_fork_head,smart_TF_fork_head,prints_TF_fork_head,pfscan_TF_fork_head	-	no_errors	FOXJ1	HGNC	ENSG00000129654				42	0	0	37	8	17.7778
P4HB	0	genome.wustl.edu	37	17	79803764	79803764	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	17	79803764	79803764	T	-	DEL	P4HB	ENST00000331483	human	ensembl	74_37	-1	known	frame_shift_del	c.1160	p.N387fs	1.000	pfam_Thioredoxin_domain,superfamily_Thioredoxin-like_fold,tigrfam_Prot_disulphide_isomerase,tigrfam_Disulphide_isomerase	pfam_Thioredoxin_domain,superfamily_Thioredoxin-like_fold,prints_Thioredoxin,tigrfam_Prot_disulphide_isomerase,tigrfam_Disulphide_isomerase	-	no_errors	P4HB	HGNC	ENSG00000185624				42	0	0	34	9	20.9302
FASN	0	genome.wustl.edu	37	17	80043423	80043423	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	17	80043423	80043423	G	-	DEL	FASN	ENST00000306749	human	ensembl	74_37	-1	known	frame_shift_del	c.4057	p.L1353fs	0.993	NULL	pfam_Acyl_transferase,pfam_Ketoacyl_synth_N,pfam_Thioesterase,pfam_PKS_KR,pfam_DH_sc/Rdtase_SDR,pfam_Ketoacyl_synth_C,pfam_ADH_C,pfam_Acyl_carrier_prot-like,pfam_Methyltransf_12,pfam_Methyltransf_11,superfamily_Thiolase-like,superfamily_Acyl_Trfase/lysoPLipase,superfamily_GroES-like,superfamily_Acyl_carrier_prot-like,superfamily_Malonyl_transacylase_ACP-bd,smart_PKS_Beta-ketoAc_synthase_dom,smart_PKS_acyl_transferase,smart_PKS_dehydratase,smart_PKS_ER,smart_PKS/FAS_KR,smart_PKS_PP-bd,pfscan_Acyl_carrier_prot-like	-	no_errors	FASN	HGNC	ENSG00000169710				14	0	0	12	5	29.4118
RAB40B	0	genome.wustl.edu	37	17	80615774	80615775	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	17	80615774	80615775	-	G	INS	RAB40B	ENST00000571995	human	ensembl	74_37	-1	known	frame_shift_ins	c.802_801	p.K267fs	0.000:0.006	NULL	pfam_Small_GTPase,pfam_MIRO-like,pfam_SOCS_C,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,smart_SOCS_C,pfscan_SOCS_C,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB40B	HGNC	ENSG00000141542				207	0	0	175	31	15.0485
ARHGEF15	0	genome.wustl.edu	37	17	8215907	8215908	+	Frame_Shift_Del	DEL	GA	GA	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	GA	GA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	17	8215907	8215908	GA	-	DEL	ARHGEF15	ENST00000361926	human	ensembl	74_37	+1	known	frame_shift_del	c.550_551	p.E186fs	0.995:0.996	NULL	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_DH-domain	-	no_errors	ARHGEF15	HGNC	ENSG00000198844				79	0	0	53	13	19.697
RBBP8	0	genome.wustl.edu	37	18	20572853	20572853	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	18	20572853	20572853	A	-	DEL	RBBP8	ENST00000327155	human	ensembl	74_37	+1	known	frame_shift_del	c.1063	p.K357fs	0.002	NULL	pfam_CtIP_N,pfam_DNA-repair_Sae2/CtIP	-	no_errors	RBBP8	HGNC	ENSG00000101773				174	0	0	128	34	20.9877
SMCHD1	0	genome.wustl.edu	37	18	2718224	2718224	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	18	2718224	2718224	A	-	DEL	SMCHD1	ENST00000320876	human	ensembl	74_37	+1	known	frame_shift_del	c.2329	p.M779fs	1.000	NULL	pfam_SMC_hinge,superfamily_SMC_hinge,superfamily_HATPase_ATP-bd,smart_SMC_hinge	-	no_errors	SMCHD1	HGNC	ENSG00000101596				66	0	0	49	8	14.0351
WBP11P1	0	genome.wustl.edu	37	18	30091782	30091782	+	RNA	DEL	T	T	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	18	30091782	30091782	T	-	DEL	WBP11P1	ENST00000567636	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.287	-	-	-	no_errors	WBP11P1	HGNC	ENSG00000260389				84	0	0	64	21	24.7059
ENSG00000252258	0	genome.wustl.edu	37	18	3025533	3025533	+	RNA	DEL	A	A	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	18	3025533	3025533	A	-	DEL	ENSG00000252258	ENST00000516449	human	ensembl	74_37	-1	novel	rna	NULL	NULL	0.000	-	-	-	no_errors	SNORA70	RFAM	ENSG00000252258				25	0	0	41	4	8.88889
DTNA	0	genome.wustl.edu	37	18	32395860	32395860	+	RNA	DEL	T	T	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	18	32395860	32395860	T	-	DEL	DTNA	ENST00000592114	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.029	-	-	-	no_errors	DTNA	HGNC	ENSG00000134769				69	0	0	74	31	29.5238
PSTPIP2	0	genome.wustl.edu	37	18	43595905	43595906	+	Splice_Site	INS	-	-	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	18	43595905	43595906	-	A	INS	PSTPIP2	ENST00000409746	human	ensembl	74_37	-1	known	splice_site_ins	c.213-3_213-2	e4-2	0.995:0.738	-	-	-	no_errors	PSTPIP2	HGNC	ENSG00000152229				17	0	0	36	5	12.1951
STARD6	0	genome.wustl.edu	37	18	51851166	51851166	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	18	51851166	51851166	T	-	DEL	STARD6	ENST00000307844	human	ensembl	74_37	-1	known	frame_shift_del	c.559	p.T187fs	0.760	pfam_START_lipid-bd_dom,smart_START_lipid-bd_dom,pfscan_START_lipid-bd_dom	pfam_START_lipid-bd_dom,smart_START_lipid-bd_dom,pfscan_START_lipid-bd_dom	-	no_errors	STARD6	HGNC	ENSG00000174448				149	0	0	101	19	15.8333
LMAN1	0	genome.wustl.edu	37	18	57013194	57013194	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	18	57013194	57013194	T	-	DEL	LMAN1	ENST00000251047	human	ensembl	74_37	-1	known	frame_shift_del	c.912	p.E305fs	0.898	superfamily_HMG_box_dom	pfam_Lectin_leg,superfamily_ConA-like_lec_gl_sf,superfamily_HMG_box_dom	-	no_errors	LMAN1	HGNC	ENSG00000074695				170	1	0.584795	126	41	24.5509
SERPINB10	0	genome.wustl.edu	37	18	61584739	61584739	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	18	61584739	61584739	A	-	DEL	SERPINB10	ENST00000238508	human	ensembl	74_37	+1	known	frame_shift_del	c.218	p.R76fs	0.998	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	-	no_errors	SERPINB10	HGNC	ENSG00000242550				19	0	0	13	2	13.3333
RTTN	0	genome.wustl.edu	37	18	67697249	67697249	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	18	67697249	67697249	T	-	DEL	RTTN	ENST00000255674	human	ensembl	74_37	-1	known	frame_shift_del	c.5744	p.K1915fs	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	RTTN	HGNC	ENSG00000176225				222	1	0.44843	152	54	26.2136
LAMA1	0	genome.wustl.edu	37	18	7038885	7038885	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	18	7038885	7038885	T	-	DEL	LAMA1	ENST00000389658	human	ensembl	74_37	-1	known	frame_shift_del	c.1487	p.N496fs	1.000	pfam_EGF_laminin,smart_EGF_laminin,smart_EG-like_dom,pfscan_EGF_laminin	pfam_Laminin_G,pfam_EGF_laminin,pfam_Laminin_B_type_IV,pfam_Laminin_N,pfam_Laminin_I,pfam_Laminin_II,superfamily_ConA-like_lec_gl_sf,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	LAMA1	HGNC	ENSG00000101680				242	0	0	191	34	15.1111
ZNF236	0	genome.wustl.edu	37	18	74617125	74617125	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	18	74617125	74617125	A	-	DEL	ZNF236	ENST00000253159	human	ensembl	74_37	+1	known	frame_shift_del	c.2045	p.K683fs	0.911	pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF236	HGNC	ENSG00000130856				42	0	0	40	18	31.0345
C19orf26	0	genome.wustl.edu	37	19	1231033	1231034	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	19	1231033	1231034	-	G	INS	C19orf26	ENST00000590083	human	ensembl	74_37	-1	known	frame_shift_ins	c.1221_1220	p.R408fs	0.000:0.001	NULL	NULL	-	no_errors	C19orf26	HGNC	ENSG00000099625				43	0	0	22	5	18.5185
ZNF799	0	genome.wustl.edu	37	19	12501516	12501517	+	Frame_Shift_Del	DEL	CA	CA	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	CA	CA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	19	12501516	12501517	CA	-	DEL	ZNF799	ENST00000430385	human	ensembl	74_37	-1	known	frame_shift_del	c.1696_1695	p.C565fs	0.987:0.985	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF799	HGNC	ENSG00000196466				214	0	0	186	38	16.9643
ZNF564	0	genome.wustl.edu	37	19	12639171	12639171	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	19	12639171	12639171	T	-	DEL	ZNF564	ENST00000339282	human	ensembl	74_37	-1	known	frame_shift_del	c.138	p.K46fs	0.789	superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF564	HGNC	ENSG00000249709				90	0	0	69	14	16.8675
MAN2B1	0	genome.wustl.edu	37	19	12759983	12759984	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	19	12759983	12759984	-	C	INS	MAN2B1	ENST00000456935	human	ensembl	74_37	-1	known	frame_shift_ins	c.2403_2402	p.S802fs	0.996:1.000	pfam_Glyco_hydro_38_C,superfamily_Gal_mutarotase_SF_dom	pfam_Glyco_hydro_38_C,pfam_Glyco_hydro_38_N,pfam_Glyco_hydro_38_cen_dom,superfamily_Gal_mutarotase_SF_dom,superfamily_Glyco_hydro/deAcase_b/a-brl,smart_Glyco_hydro_38_cen_dom	-	no_errors	MAN2B1	HGNC	ENSG00000104774				67	0	0	57	12	17.3913
MAST1	0	genome.wustl.edu	37	19	12985060	12985060	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	19	12985060	12985060	G	-	DEL	MAST1	ENST00000251472	human	ensembl	74_37	+1	known	frame_shift_del	c.4089	p.G1365fs	0.074	NULL	pfam_MA_Ser/Thr_Kinase_dom,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_PDZ,superfamily_Kinase-like_dom,superfamily_MAST_pre-PK_dom,superfamily_PDZ,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_PDZ,pfscan_PDZ,pfscan_Prot_kinase_dom	-	no_errors	MAST1	HGNC	ENSG00000105613				8	0	0	6	4	40
CHERP	0	genome.wustl.edu	37	19	16640713	16640714	+	Splice_Site	INS	-	-	GA			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	19	16640713	16640714	-	GA	INS	CHERP	ENST00000546361	human	ensembl	74_37	-1	known	splice_site_ins	c.877-3_877-2	e8-2	1.000:1.000	-	-	-	no_errors	CHERP	HGNC	ENSG00000085872				28	0	0	27	3	10
TM6SF2	0	genome.wustl.edu	37	19	19377330	19377331	+	Frame_Shift_Del	DEL	CA	CA	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	CA	CA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	19	19377330	19377331	CA	-	DEL	TM6SF2	ENST00000389363	human	ensembl	74_37	-1	known	frame_shift_del	c.893_892	p.W298fs	1.000:1.000	pfam_Transmembrane_6/97	pfam_Transmembrane_6/97	-	no_errors	TM6SF2	HGNC	ENSG00000213996				163	0	0	124	10	7.46269
GNA11	0	genome.wustl.edu	37	19	3118934	3118934	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	19	3118934	3118934	G	-	DEL	GNA11	ENST00000078429	human	ensembl	74_37	+1	known	frame_shift_del	c.618	p.G208fs	0.993	pfam_Gprotein_alpha_su,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,smart_Gprotein_alpha_su,prints_Gprotein_alpha_su	pfam_Gprotein_alpha_su,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,superfamily_GproteinA_insert,smart_Gprotein_alpha_su,prints_Gprotein_alpha_su,prints_Gprotein_alpha_Q,prints_Fungi_Gprotein_alpha	-	no_errors	GNA11	HGNC	ENSG00000088256				142	0	0	99	20	16.8067
TJP3	0	genome.wustl.edu	37	19	3728677	3728679	+	In_Frame_Del	DEL	GTG	GTG	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	GTG	GTG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	19	3728677	3728679	GTG	-	DEL	TJP3	ENST00000262968	human	ensembl	74_37	+1	known	in_frame_del	c.181_183	p.V62in_frame_del	1.000:1.000:1.000	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_PDZ,pfam_SH3_2,pfam_GK/Ca_channel_bsu,superfamily_PDZ,superfamily_P-loop_NTPase,superfamily_SH3_domain,smart_PDZ,smart_SH3_domain,smart_GK/Ca_channel_bsu,pfscan_PDZ,pfscan_SH3_domain,pfscan_Guanylate_kin-like,prints_ZonOcculS3,prints_ZonOcculdens	-	no_errors	TJP3	HGNC	ENSG00000105289				56	0	0	45	6	11.7647
MEGF8	0	genome.wustl.edu	37	19	42838298	42838298	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	19	42838298	42838298	G	-	DEL	MEGF8	ENST00000251268	human	ensembl	74_37	+1	known	frame_shift_del	c.491	p.G166fs	1.000	smart_EG-like_dom	pfam_CUB_dom,pfam_EGF_laminin,pfam_Plexin_repeat,superfamily_Gal_Oxase/kelch_b-propeller,superfamily_CUB_dom,superfamily_Plexin-like_fold,smart_CUB_dom,smart_EG-like_dom,smart_Plexin-like_fold,smart_EGF-like_Ca-bd_dom,smart_EGF_laminin,pfscan_CUB_dom,pfscan_EG-like_dom,pfscan_EGF_laminin	-	no_errors	MEGF8	HGNC	ENSG00000105429				53	0	0	41	5	10.8696
NOVA2	0	genome.wustl.edu	37	19	46443322	46443323	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	19	46443322	46443323	-	C	INS	NOVA2	ENST00000263257	human	ensembl	74_37	-1	known	frame_shift_ins	c.1278_1277	p.K427fs	0.994:1.000	pfam_KH_dom_type_1,smart_KH_dom,pfscan_KH_dom_type_1	pfam_KH_dom_type_1,smart_KH_dom,pfscan_KH_dom_type_1	-	no_errors	NOVA2	HGNC	ENSG00000104967				258	1	0.3861	208	44	17.4603
MAMSTR	0	genome.wustl.edu	37	19	49218105	49218106	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	19	49218105	49218106	-	G	INS	MAMSTR	ENST00000318083	human	ensembl	74_37	-1	known	frame_shift_ins	c.486_485	p.H163fs	0.043:0.036	NULL	pfam_SAP_dom,smart_SAP_dom,pfscan_SAP_dom	-	no_errors	MAMSTR	HGNC	ENSG00000176909				177	0	0	147	28	16
TEAD2	0	genome.wustl.edu	37	19	49850473	49850473	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	19	49850473	49850473	G	-	DEL	TEAD2	ENST00000311227	human	ensembl	74_37	-1	known	frame_shift_del	c.883	p.H295fs	0.961	pfam_TEA/ATTS,pirsf_TEF	pfam_TEA/ATTS,smart_TEA/ATTS,pirsf_TEF,pfscan_TEA/ATTS,prints_TEA/ATTS	-	no_errors	TEAD2	HGNC	ENSG00000074219				351	1	0.284091	286	55	16.129
SLC17A7	0	genome.wustl.edu	37	19	49933805	49933806	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	19	49933805	49933806	-	G	INS	SLC17A7	ENST00000221485	human	ensembl	74_37	-1	known	frame_shift_ins	c.1654_1653	p.R551fs	0.558:0.428	NULL	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC17A7	HGNC	ENSG00000104888				46	0	0	29	10	25.641
AP2A1	0	genome.wustl.edu	37	19	50304647	50304647	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	19	50304647	50304647	C	-	DEL	AP2A1	ENST00000354293	human	ensembl	74_37	+1	known	frame_shift_del	c.1554	p.P520fs	1.000	pfam_Clathrin/coatomer_adapt-like_N,superfamily_ARM-type_fold,pirsf_AP2_complex_asu	pfam_Clathrin/coatomer_adapt-like_N,pfam_Clathrin_a-adaptin_app_sub_C,pfam_Clathrin_a/b/g-adaptin_app_Ig,superfamily_ARM-type_fold,superfamily_Coatomer/calthrin_app_sub_C,superfamily_Coatomer/clathrin_app_Ig-like,smart_Clathrin_a/b/g-adaptin_app_Ig,pirsf_AP2_complex_asu	-	no_errors	AP2A1	HGNC	ENSG00000196961				70	0	0	62	15	19.4805
NAPSA	0	genome.wustl.edu	37	19	50862305	50862306	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	19	50862305	50862306	-	C	INS	NAPSA	ENST00000253719	human	ensembl	74_37	-1	known	frame_shift_ins	c.998_997	p.V333fs	0.388:0.394	pfam_Aspartic_peptidase,superfamily_Peptidase_aspartic_dom	pfam_Aspartic_peptidase,superfamily_Peptidase_aspartic_dom,prints_Aspartic_peptidase	-	no_errors	NAPSA	HGNC	ENSG00000131400				102	0	0	92	28	23.3333
IGLON5	0	genome.wustl.edu	37	19	51830417	51830417	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	19	51830417	51830417	C	-	DEL	IGLON5	ENST00000270642	human	ensembl	74_37	+1	known	frame_shift_del	c.730	p.A246fs	1.000	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	IGLON5	HGNC	ENSG00000142549				50	0	0	35	8	18.6047
LILRB5	0	genome.wustl.edu	37	19	54754833	54754833	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	19	54754833	54754833	G	-	DEL	LILRB5	ENST00000450632	human	ensembl	74_37	-1	known	frame_shift_del	c.1802	p.P601fs	0.000	NULL	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	LILRB5	HGNC	ENSG00000105609				36	0	0	41	8	16.3265
DNAAF3	0	genome.wustl.edu	37	19	55676795	55676795	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	19	55676795	55676795	G	-	DEL	DNAAF3	ENST00000527223	human	ensembl	74_37	-1	known	frame_shift_del	c.469	p.R157fs	1.000	NULL	NULL	-	no_errors	DNAAF3	HGNC	ENSG00000167646				88	0	0	71	19	21.1111
POLRMT	0	genome.wustl.edu	37	19	632888	632888	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	19	632888	632888	G	-	DEL	POLRMT	ENST00000588649	human	ensembl	74_37	-1	known	frame_shift_del	c.139	p.Q47fs	0.985	NULL	pfam_DNA-dir_Rpol_phage-type	-	no_errors	POLRMT	HGNC	ENSG00000099821				9	0	0	4	3	42.8571
GTF2F1	0	genome.wustl.edu	37	19	6380419	6380419	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	19	6380419	6380419	T	-	DEL	GTF2F1	ENST00000394456	human	ensembl	74_37	-1	known	frame_shift_del	c.1427	p.K476fs	1.000	pfam_TFIIF-alpha	pfam_TFIIF-alpha,superfamily_TFIIF_interaction	-	no_errors	GTF2F1	HGNC	ENSG00000125651				260	0	0	213	38	15.1394
MYO1F	0	genome.wustl.edu	37	19	8613002	8613002	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	19	8613002	8613002	T	-	DEL	MYO1F	ENST00000338257	human	ensembl	74_37	-1	known	frame_shift_del	c.1187	p.N396fs	1.000	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom,prints_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Myosin_tail_2,pfam_SH3_domain,pfam_SH3_2,superfamily_P-loop_NTPase,superfamily_SH3_domain,smart_Myosin_head_motor_dom,smart_SH3_domain,pfscan_IQ_motif_EF-hand-BS,pfscan_SH3_domain,prints_Myosin_head_motor_dom,prints_SH3_domain	-	no_errors	MYO1F	HGNC	ENSG00000142347				345	0	0	306	67	17.9625
MAP4K4	0	genome.wustl.edu	37	2	102452431	102452432	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	2	102452431	102452432	-	A	INS	MAP4K4	ENST00000324219	human	ensembl	74_37	+1	known	frame_shift_ins	c.764_765	p.W258fs	1.000:0.996	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Citron,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Citron,pfscan_Prot_kinase_dom	-	no_errors	MAP4K4	HGNC	ENSG00000071054				31	0	0	34	9	20.9302
GCC2	0	genome.wustl.edu	37	2	109087884	109087884	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	2	109087884	109087884	A	-	DEL	GCC2	ENST00000309863	human	ensembl	74_37	+1	known	frame_shift_del	c.2099	p.K702fs	1.000	NULL	pfam_GRIP,superfamily_GRIP,superfamily_tRNA-bd_arm,smart_GRIP,pfscan_GRIP	-	no_errors	GCC2	HGNC	ENSG00000135968				349	0	0	281	83	22.8022
ENSG00000231731	0	genome.wustl.edu	37	2	128263364	128263366	+	RNA	DEL	AAA	AAA	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	AAA	AAA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	2	128263364	128263366	AAA	-	DEL	ENSG00000231731	ENST00000599001	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.233:0.319:0.309	-	-	-	no_errors	AC010976.2	Clone_based_vega_gene	ENSG00000231731				59	0	0	42	24	36.3636
SAP130	0	genome.wustl.edu	37	2	128699612	128699613	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	2	128699612	128699613	-	T	INS	SAP130	ENST00000357702	human	ensembl	74_37	-1	known	frame_shift_ins	c.3220_3219	p.V1073fs	1.000:1.000	NULL	NULL	-	no_errors	SAP130	HGNC	ENSG00000136715				227	1	0.438596	186	67	26.4822
MGAT5	0	genome.wustl.edu	37	2	135012020	135012020	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	2	135012020	135012020	T	-	DEL	MGAT5	ENST00000281923	human	ensembl	74_37	+1	known	frame_shift_del	c.46	p.F17fs	1.000	NULL	NULL	-	no_errors	MGAT5	HGNC	ENSG00000152127				79	0	0	42	16	27.5862
ACVR2A	0	genome.wustl.edu	37	2	148683686	148683686	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	2	148683686	148683686	A	-	DEL	ACVR2A	ENST00000241416	human	ensembl	74_37	+1	known	frame_shift_del	c.1303	p.K437fs	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Activin_rcpt,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_TGFB_receptor	-	no_errors	ACVR2A	HGNC	ENSG00000121989				163	0	0	119	45	27.439
RIF1	0	genome.wustl.edu	37	2	152320541	152320541	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	2	152320541	152320541	A	-	DEL	RIF1	ENST00000243326	human	ensembl	74_37	+1	known	frame_shift_del	c.4507	p.K1505fs	0.001	NULL	pfam_Rif1_N,superfamily_ARM-type_fold	-	no_errors	RIF1	HGNC	ENSG00000080345				129	0	0	114	20	14.9254
RIF1	0	genome.wustl.edu	37	2	152321162	152321163	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	2	152321162	152321163	-	A	INS	RIF1	ENST00000243326	human	ensembl	74_37	+1	known	frame_shift_ins	c.5128_5129	p.T1712fs	1.000:1.000	NULL	pfam_Rif1_N,superfamily_ARM-type_fold	-	no_errors	RIF1	HGNC	ENSG00000080345				73	0	0	71	17	19.3182
LY75	0	genome.wustl.edu	37	2	160673462	160673462	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	2	160673462	160673462	T	-	DEL	LY75	ENST00000554112	human	ensembl	74_37	-1	known	frame_shift_del	c.4235	p.K1412fs	0.727	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	pfam_C-type_lectin,pfam_FN_type2_col-bd,superfamily_C-type_lectin_fold,superfamily_Ricin_B_lectin,superfamily_Kringle-like,smart_Ricin_B_lectin,smart_FN_type2_col-bd,smart_C-type_lectin,pfscan_FN_type2_col-bd,pfscan_C-type_lectin,pfscan_Ricin_B_lectin	-	no_errors	LY75	HGNC	ENSG00000054219				95	0	0	95	24	20.1681
ITGA6	0	genome.wustl.edu	37	2	173368930	173368931	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	2	173368930	173368931	-	A	INS	ITGA6	ENST00000264106	human	ensembl	74_37	+1	known	frame_shift_ins	c.3343_3344	p.Q1118fs	1.000:1.000	NULL	pfam_Integrin_alpha-2,pfam_FG-GAP,smart_Int_alpha_beta-p,prints_Integrin_alpha	-	no_errors	ITGA6	HGNC	ENSG00000091409				12	0	0	10	4	28.5714
PDE11A	0	genome.wustl.edu	37	2	178494204	178494204	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	2	178494204	178494204	T	-	DEL	PDE11A	ENST00000286063	human	ensembl	74_37	-1	known	frame_shift_del	c.2733	p.K911fs	0.957	NULL	pfam_PDEase_catalytic_dom,pfam_GAF,smart_GAF,smart_HD/PDEase_dom,prints_PDEase	-	no_errors	PDE11A	HGNC	ENSG00000128655				211	1	0.471698	147	26	15.0289
FKBP7	0	genome.wustl.edu	37	2	179330469	179330471	+	RNA	DEL	AAA	AAA	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	AAA	AAA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	2	179330469	179330471	AAA	-	DEL	FKBP7	ENST00000464248	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000:0.000:0.000	-	-	-	no_errors	FKBP7	HGNC	ENSG00000079150				39	0	0	17	12	41.3793
ENSG00000271011	0	genome.wustl.edu	37	2	179442293	179442293	+	RNA	DEL	A	A	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	2	179442293	179442293	A	-	DEL	ENSG00000271011	ENST00000604215	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.038	-	-	-	no_errors	RP11-171I2.5	Clone_based_vega_gene	ENSG00000271011				29	0	0	17	7	29.1667
TTN	0	genome.wustl.edu	37	2	179579969	179579970	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	2	179579969	179579970	-	T	INS	TTN	ENST00000342992	human	ensembl	74_37	-1	known	frame_shift_ins	c.22212_22211	p.P7405fs	0.989:0.998	pfam_Ig_I-set,superfamily_RNaseH-like_dom,smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				114	0	0	83	22	20.9524
ENSG00000257045	0	genome.wustl.edu	37	2	200193649	200193649	+	RNA	DEL	A	A	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	2	200193649	200193649	A	-	DEL	ENSG00000257045	ENST00000489557	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RP11-486F17.1	Clone_based_vega_gene	ENSG00000257045				34	0	0	22	7	24.1379
BZW1	0	genome.wustl.edu	37	2	201683505	201683505	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	2	201683505	201683505	A	-	DEL	BZW1	ENST00000409600	human	ensembl	74_37	+1	known	frame_shift_del	c.847	p.N285fs	1.000	superfamily_ARM-type_fold	pfam_W2_domain,superfamily_ARM-type_fold,smart_W2_domain	-	no_errors	BZW1	HGNC	ENSG00000082153				79	0	0	64	21	24.7059
CASP8	0	genome.wustl.edu	37	2	202151290	202151290	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	2	202151290	202151290	A	-	DEL	CASP8	ENST00000358485	human	ensembl	74_37	+1	known	frame_shift_del	c.1590	p.K532fs	0.061	pfam_Pept_C14_caspase,smart_Pept_C14A_p45_core,pfscan_Pept_C14_p10	pfam_DED,pfam_Pept_C14_caspase,superfamily_DEATH-like_dom,smart_DED,smart_Pept_C14A_p45_core,pfscan_DED,pfscan_Pept_C14_p10,pfscan_Pept_C14_ICE_p20,prints_Pept_C14A_p45_core	-	no_errors	CASP8	HGNC	ENSG00000064012				77	0	0	69	17	19.7674
ALS2	0	genome.wustl.edu	37	2	202598174	202598175	+	RNA	INS	-	-	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	2	202598174	202598175	-	A	INS	ALS2	ENST00000494017	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001:0.002	-	-	-	no_errors	ALS2	HGNC	ENSG00000003393				57	0	0	39	11	22
BMPR2	0	genome.wustl.edu	37	2	203420130	203420130	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	2	203420130	203420130	A	-	DEL	BMPR2	ENST00000374580	human	ensembl	74_37	+1	known	frame_shift_del	c.1742	p.N583fs	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Activin_rcpt,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	BMPR2	HGNC	ENSG00000204217				150	0	0	118	34	22.3684
NBEAL1	0	genome.wustl.edu	37	2	204037548	204037549	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	2	204037548	204037549	-	A	INS	NBEAL1	ENST00000449802	human	ensembl	74_37	+1	known	frame_shift_ins	c.6208_6209	p.N2072fs	1.000:1.000	pfam_BEACH_dom,superfamily_BEACH_dom,pfscan_BEACH_dom	pfam_BEACH_dom,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_ConA-like_lec_gl_sf,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	NBEAL1	HGNC	ENSG00000144426				157	0	0	136	44	24.4444
INO80D	0	genome.wustl.edu	37	2	206882406	206882406	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	2	206882406	206882406	T	-	DEL	INO80D	ENST00000403263	human	ensembl	74_37	-1	known	frame_shift_del	c.1540	p.M514fs	1.000	NULL	NULL	-	no_errors	INO80D	HGNC	ENSG00000114933				14	0	0	12	3	20
PIKFYVE	0	genome.wustl.edu	37	2	209169732	209169732	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	2	209169732	209169732	A	-	DEL	PIKFYVE	ENST00000264380	human	ensembl	74_37	+1	known	frame_shift_del	c.1631	p.E546fs	1.000	NULL	pfam_PInositol-4-P-5-kinase_core,pfam_Cpn60/TCP-1,pfam_DEP_dom,pfam_Znf_FYVE,superfamily_GroEL-like_apical_dom,superfamily_Znf_FYVE_PHD,smart_Znf_FYVE,smart_DEP_dom,smart_PInositol-4P-5-kinase_core_sub,pfscan_DEP_dom,pfscan_Znf_FYVE-rel	-	no_errors	PIKFYVE	HGNC	ENSG00000115020				63	0	0	57	15	20.8333
RNF25	0	genome.wustl.edu	37	2	219528925	219528925	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	2	219528925	219528925	G	-	DEL	RNF25	ENST00000295704	human	ensembl	74_37	-1	known	frame_shift_del	c.1135	p.L379fs	0.996	NULL	pfam_RWD-domain,superfamily_UBQ-conjugating_enzyme/RWD,smart_RWD-domain,smart_Znf_RING,pfscan_RWD-domain,pfscan_Znf_RING	-	no_errors	RNF25	HGNC	ENSG00000163481				309	0	0	315	17	5.12048
SPEG	0	genome.wustl.edu	37	2	220348876	220348876	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	2	220348876	220348876	C	-	DEL	SPEG	ENST00000312358	human	ensembl	74_37	+1	novel	frame_shift_del	c.6691	p.Q2233fs	0.034	NULL	pfam_Ig_I-set,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	SPEG	HGNC	ENSG00000072195				70	0	0	67	7	9.45946
IRS1	0	genome.wustl.edu	37	2	227661341	227661341	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	2	227661341	227661341	C	-	DEL	IRS1	ENST00000305123	human	ensembl	74_37	-1	known	frame_shift_del	c.2114	p.G705fs	0.943	NULL	pfam_Insln_rcpt_S1,pfam_Pleckstrin_homology,smart_Pleckstrin_homology,smart_Insln_rcpt_S1,prints_Insln_rcpt_S1,pfscan_Pleckstrin_homology,pfscan_Insln_rcpt_S1	-	no_errors	IRS1	HGNC	ENSG00000169047				192	0	0	158	27	14.5946
PSMD1	0	genome.wustl.edu	37	2	231927286	231927287	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	2	231927286	231927287	-	T	INS	PSMD1	ENST00000308696	human	ensembl	74_37	+1	known	frame_shift_ins	c.201_202	p.Y68fs	0.975:1.000	superfamily_ARM-type_fold,pirsf_26S_Psome_Rpn2	pfam_Proteasome/cyclosome_rpt,superfamily_ARM-type_fold,pirsf_26S_Psome_Rpn2	-	no_errors	PSMD1	HGNC	ENSG00000173692				187	0	0	146	50	25.5102
CAPN10	0	genome.wustl.edu	37	2	241536203	241536203	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	2	241536203	241536203	G	-	DEL	CAPN10	ENST00000391984	human	ensembl	74_37	+1	known	frame_shift_del	c.1587	p.G531fs	0.079	pfam_Calpain_domain_III,superfamily_Calpain_domain_III,smart_Calpain_III	pfam_Peptidase_C2_calpain_cat,pfam_Calpain_domain_III,superfamily_Calpain_domain_III,smart_Peptidase_C2_calpain_cat,smart_Calpain_III,pfscan_Peptidase_C2_calpain_cat,prints_Calpain_cysteine_protease	-	no_errors	CAPN10	HGNC	ENSG00000142330				71	0	0	67	4	5.6338
SLC30A3	0	genome.wustl.edu	37	2	27479380	27479380	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	2	27479380	27479380	G	-	DEL	SLC30A3	ENST00000233535	human	ensembl	74_37	-1	known	frame_shift_del	c.892	p.R298fs	0.088	pfam_Cation_efflux,tigrfam_Cation_efflux	pfam_Cation_efflux,tigrfam_Cation_efflux	-	no_errors	SLC30A3	HGNC	ENSG00000115194				55	0	0	62	10	13.8889
KRTCAP3	0	genome.wustl.edu	37	2	27666007	27666009	+	In_Frame_Del	DEL	CTT	CTT	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	CTT	CTT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	2	27666007	27666009	CTT	-	DEL	KRTCAP3	ENST00000288873	human	ensembl	74_37	+1	known	in_frame_del	c.340_342	p.L115in_frame_del	1.000:1.000:0.987	pfam_Beta-casein-like	pfam_Beta-casein-like	-	no_errors	KRTCAP3	HGNC	ENSG00000157992				349	0	0	307	58	15.8904
SLC4A1AP	0	genome.wustl.edu	37	2	27908027	27908027	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	2	27908027	27908027	A	-	DEL	SLC4A1AP	ENST00000326019	human	ensembl	74_37	+1	known	frame_shift_del	c.1999	p.K668fs	0.000	NULL	pfam_FHA_dom,pfam_dsRNA-bd_dom,superfamily_SMAD_FHA_domain,smart_FHA_dom,pfscan_FHA_dom	-	no_errors	SLC4A1AP	HGNC	ENSG00000163798				125	0	0	111	11	9.01639
SULT6B1	0	genome.wustl.edu	37	2	37414553	37414553	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	2	37414553	37414553	T	-	DEL	SULT6B1	ENST00000535679	human	ensembl	74_37	-1	known	frame_shift_del	c.257	p.K86fs	0.944	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase	-	no_errors	SULT6B1	HGNC	ENSG00000138068				83	0	0	51	9	15
RMDN2	0	genome.wustl.edu	37	2	38224583	38224583	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	2	38224583	38224583	A	-	DEL	RMDN2	ENST00000234195	human	ensembl	74_37	+1	known	frame_shift_del	c.1504	p.M504fs	1.000	NULL	NULL	-	no_errors	RMDN2	HGNC	ENSG00000115841				144	0	0	107	33	23.5714
PSME4	0	genome.wustl.edu	37	2	54093345	54093345	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	2	54093345	54093345	T	-	DEL	PSME4	ENST00000404125	human	ensembl	74_37	-1	known	frame_shift_del	c.5413	p.T1805fs	1.000	pfam_DUF3437,superfamily_ARM-type_fold	pfam_DUF3437,superfamily_ARM-type_fold	-	no_errors	PSME4	HGNC	ENSG00000068878				189	0	0	159	42	20.8955
ENSG00000226605	0	genome.wustl.edu	37	2	63053199	63053199	+	RNA	DEL	T	T	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	2	63053199	63053199	T	-	DEL	ENSG00000226605	ENST00000452397	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.047	-	-	-	no_errors	AC007098.1	Clone_based_vega_gene	ENSG00000226605				59	0	0	34	19	35.8491
UGP2	0	genome.wustl.edu	37	2	64111165	64111166	+	Frame_Shift_Ins	INS	-	-	AA			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	2	64111165	64111166	-	AA	INS	UGP2	ENST00000337130	human	ensembl	74_37	+1	known	frame_shift_ins	c.513_514	p.I173fs	0.502:0.998	pfam_UDPGP_trans,pirsf_UDPGP_trans_subgr	pfam_UDPGP_trans,pirsf_UDPGP_trans_subgr	-	no_errors	UGP2	HGNC	ENSG00000169764				72	0	0	62	12	16.2162
ATP6V1B1	0	genome.wustl.edu	37	2	71191573	71191573	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	2	71191573	71191573	C	-	DEL	ATP6V1B1	ENST00000234396	human	ensembl	74_37	+1	known	frame_shift_del	c.1149	p.I386fs	0.999	pfam_ATPase_F1/V1/A1_a/bsu_nucl-bd,superfamily_P-loop_NTPase,tigrfam_ATPase_V1-cplx_bsu	pfam_ATPase_F1/V1/A1_a/bsu_nucl-bd,pfam_ATPase_F1/V1/A1-cplx_a/bsu_C,pfam_ATPase_F1_a/bsu_N,superfamily_P-loop_NTPase,superfamily_ATPase_F1_a/bsu_N,superfamily_ATPase_F1/V1/A1-cplx_a/bsu_C,tigrfam_ATPase_V1-cplx_bsu	-	no_errors	ATP6V1B1	HGNC	ENSG00000116039				139	0	0	109	22	16.7939
DYSF	0	genome.wustl.edu	37	2	71817411	71817411	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	2	71817411	71817411	T	-	DEL	DYSF	ENST00000413539	human	ensembl	74_37	+1	known	frame_shift_del	c.3606	p.S1204fs	0.996	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	pfam_C2_dom,pfam_Ferlin_B-domain,pfam_FerIin-domain,pfam_Ferlin_A-domain,superfamily_C2_dom,superfamily_MFS_dom_general_subst_transpt,smart_C2_dom,smart_Peroxin/Ferlin,pfscan_C2_dom	-	no_errors	DYSF	HGNC	ENSG00000135636				133	0	0	103	32	23.7037
DYSF	0	genome.wustl.edu	37	2	71839797	71839797	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	2	71839797	71839797	C	-	DEL	DYSF	ENST00000413539	human	ensembl	74_37	+1	known	frame_shift_del	c.4287	p.I1432fs	0.989	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom	pfam_C2_dom,pfam_Ferlin_B-domain,pfam_FerIin-domain,pfam_Ferlin_A-domain,superfamily_C2_dom,superfamily_MFS_dom_general_subst_transpt,smart_C2_dom,smart_Peroxin/Ferlin,pfscan_C2_dom	-	no_errors	DYSF	HGNC	ENSG00000135636				93	0	0	68	18	20.9302
STAMBP	0	genome.wustl.edu	37	2	74058110	74058112	+	In_Frame_Del	DEL	ATT	ATT	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	ATT	ATT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	2	74058110	74058112	ATT	-	DEL	STAMBP	ENST00000339566	human	ensembl	74_37	+1	known	in_frame_del	c.127_129	p.I44in_frame_del	1.000:1.000:0.924	NULL	pfam_JAB_MPN_dom,smart_JAB_MPN_dom	-	no_errors	STAMBP	HGNC	ENSG00000124356				119	0	0	123	10	7.5188
DOK1	0	genome.wustl.edu	37	2	74781909	74781910	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	2	74781909	74781910	-	T	INS	DOK1	ENST00000233668	human	ensembl	74_37	+1	known	frame_shift_ins	c.28_29	p.L12fs	1.000:0.996	smart_Pleckstrin_homology	pfam_Insln_rcpt_S1,smart_Pleckstrin_homology,smart_Insln_rcpt_S1,pfscan_Insln_rcpt_S1	-	no_errors	DOK1	HGNC	ENSG00000115325				41	0	0	40	9	18.3673
GGCX	0	genome.wustl.edu	37	2	85780733	85780733	+	RNA	DEL	T	T	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	2	85780733	85780733	T	-	DEL	GGCX	ENST00000482662	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.004	-	-	-	no_errors	GGCX	HGNC	ENSG00000115486				29	0	0	9	8	47.0588
ASAP2	0	genome.wustl.edu	37	2	9528642	9528643	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	2	9528642	9528643	-	C	INS	ASAP2	ENST00000281419	human	ensembl	74_37	+1	known	frame_shift_ins	c.2350_2351	p.L787fs	1.000:1.000	NULL	pfam_ArfGAP,pfam_Pleckstrin_homology,pfam_Ankyrin_rpt,pfam_SH3_domain,pfam_SH3_2,superfamily_Ankyrin_rpt-contain_dom,superfamily_SH3_domain,smart_Pleckstrin_homology,smart_ArfGAP,smart_Ankyrin_rpt,smart_SH3_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_ArfGAP,prints_ArfGAP	-	no_errors	ASAP2	HGNC	ENSG00000151693				48	0	0	35	4	10.2564
ANKRD36C	0	genome.wustl.edu	37	2	96521046	96521047	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	2	96521046	96521047	-	T	INS	ANKRD36C	ENST00000456556	human	ensembl	74_37	-1	known	frame_shift_ins	c.4963_4962	p.C1654fs	0.002:0.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD36C	HGNC	ENSG00000174501				26	0	0	24	8	25
LIPT1	0	genome.wustl.edu	37	2	99778781	99778781	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	2	99778781	99778781	A	-	DEL	LIPT1	ENST00000340066	human	ensembl	74_37	+1	known	frame_shift_del	c.361	p.K123fs	0.994	pfam_BPL_LipA_LipB,tigrfam_LipoylTrfase_LipoateP_Ligase	pfam_BPL_LipA_LipB,tigrfam_LipoylTrfase_LipoateP_Ligase	-	no_errors	LIPT1	HGNC	ENSG00000144182				106	0	0	84	27	24.3243
TAF1B	0	genome.wustl.edu	37	2	9989571	9989571	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	2	9989571	9989571	A	-	DEL	TAF1B	ENST00000263663	human	ensembl	74_37	+1	known	frame_shift_del	c.187	p.N66fs	0.991	NULL	pfam_TF_Rrn7	-	no_errors	TAF1B	HGNC	ENSG00000115750				9	0	0	8	3	27.2727
EIF5B	0	genome.wustl.edu	37	2	99999352	99999352	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	2	99999352	99999352	A	-	DEL	EIF5B	ENST00000289371	human	ensembl	74_37	+1	known	frame_shift_del	c.2239	p.K748fs	1.000	pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,tigrfam_Small_GTP-bd_dom	pfam_EF_GTP-bd_dom,pfam_TIF_IF2_dom3,pfam_Transl_elong_EFTu/EF1A_2,superfamily_P-loop_NTPase,superfamily_Transl_B-barrel,superfamily_TIF_IF2_dom3,prints_EF_GTP-bd_dom,tigrfam_Small_GTP-bd_dom	-	no_errors	EIF5B	HGNC	ENSG00000158417				67	0	0	61	15	19.7368
ENSG00000232675	0	genome.wustl.edu	37	20	19673862	19673863	+	RNA	INS	-	-	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	20	19673862	19673863	-	T	INS	ENSG00000232675	ENST00000435992	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	RP4-718D20.3	Clone_based_vega_gene	ENSG00000232675				34	0	0	29	3	9.375
GINS1	0	genome.wustl.edu	37	20	25422397	25422397	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	20	25422397	25422397	A	-	DEL	GINS1	ENST00000262460	human	ensembl	74_37	+1	known	frame_shift_del	c.507	p.N172fs	0.232	NULL	NULL	-	no_errors	GINS1	HGNC	ENSG00000101003				100	0	0	72	21	22.5806
SNORD56	0	genome.wustl.edu	37	20	2637325	2637326	+	RNA	DEL	CT	CT	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	CT	CT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	20	2637325	2637326	CT	-	DEL	SNORD56	ENST00000413522	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	SNORD56	HGNC	ENSG00000229686				112	0	0	81	27	25
CPXM1	0	genome.wustl.edu	37	20	2775270	2775271	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	20	2775270	2775271	-	A	INS	CPXM1	ENST00000380605	human	ensembl	74_37	-1	known	frame_shift_ins	c.1876_1875	p.A625fs	0.083:0.162	superfamily_CarboxyPept-like_regulatory,smart_Peptidase_M14	pfam_Peptidase_M14,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,superfamily_CarboxyPept-like_regulatory,smart_Coagulation_fac_5/8-C_type_dom,smart_Peptidase_M14,pfscan_Coagulation_fac_5/8-C_type_dom,prints_Peptidase_M14	-	no_errors	CPXM1	HGNC	ENSG00000088882				90	0	0	73	20	21.5054
BPIFB4	0	genome.wustl.edu	37	20	31671214	31671214	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	20	31671214	31671214	C	-	DEL	BPIFB4	ENST00000375483	human	ensembl	74_37	+1	known	frame_shift_del	c.211	p.P73fs	0.030	NULL	pfam_Lipid-bd_serum_glycop_N,pfam_Lipid-bd_serum_glycop_C,superfamily_Bactericidal_perm-incr_a/b_dom,smart_Lipid-bd_serum_glycop_N,smart_Lipid-bd_serum_glycop_C	-	no_errors	BPIFB4	HGNC	ENSG00000186191				168	1	0.591716	122	24	16.4384
DDX27	0	genome.wustl.edu	37	20	47858504	47858504	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	20	47858504	47858504	A	-	DEL	DDX27	ENST00000371764	human	ensembl	74_37	+1	known	frame_shift_del	c.2065	p.K691fs	1.000	NULL	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX27	HGNC	ENSG00000124228				154	1	0.645161	103	35	25.3623
APCDD1L	0	genome.wustl.edu	37	20	57036091	57036091	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	20	57036091	57036091	G	-	DEL	APCDD1L	ENST00000439429	human	ensembl	74_37	-1	known	frame_shift_del	c.1294	p.L432fs	0.002	NULL	NULL	-	no_errors	APCDD1L	HGNC	ENSG00000198768				158	0	0	100	23	18.6992
NRIP1	0	genome.wustl.edu	37	21	16338330	16338330	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	21	16338330	16338330	T	-	DEL	NRIP1	ENST00000318948	human	ensembl	74_37	-1	known	frame_shift_del	c.2184	p.E729fs	0.998	NULL	NULL	-	no_errors	NRIP1	HGNC	ENSG00000180530				80	0	0	67	18	21.1765
CXADR	0	genome.wustl.edu	37	21	18933045	18933045	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	21	18933045	18933045	A	-	DEL	CXADR	ENST00000284878	human	ensembl	74_37	+1	known	frame_shift_del	c.597	p.N201fs	0.978	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_V-set,pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	-	no_errors	CXADR	HGNC	ENSG00000154639				182	0	0	149	16	9.69697
RWDD2B	0	genome.wustl.edu	37	21	30378685	30378685	+	RNA	DEL	A	A	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	21	30378685	30378685	A	-	DEL	RWDD2B	ENST00000286777	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RWDD2B	HGNC	ENSG00000156253				35	0	0	28	6	17.6471
HMGN1	0	genome.wustl.edu	37	21	40720231	40720231	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	21	40720231	40720231	T	-	DEL	HMGN1	ENST00000380749	human	ensembl	74_37	-1	known	frame_shift_del	c.113	p.K38fs	0.997	pfam_HMGN_fam,smart_HMGN_fam,prints_HMGN_fam	pfam_HMGN_fam,smart_HMGN_fam,prints_HMGN_fam	-	no_errors	HMGN1	HGNC	ENSG00000205581				197	0	0	175	28	13.7931
LCA5L	0	genome.wustl.edu	37	21	40794907	40794907	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	21	40794907	40794907	T	-	DEL	LCA5L	ENST00000288350	human	ensembl	74_37	-1	known	frame_shift_del	c.832	p.I278fs	0.992	NULL	NULL	-	no_errors	LCA5L	HGNC	ENSG00000157578				225	0	0	142	58	29
TRPM2	0	genome.wustl.edu	37	21	45786735	45786736	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	21	45786735	45786736	-	G	INS	TRPM2	ENST00000300482	human	ensembl	74_37	+1	known	frame_shift_ins	c.522_523	p.A176fs	0.000:0.996	NULL	pfam_Ion_trans_dom,superfamily_NUDIX_hydrolase_dom-like	-	no_errors	TRPM2	HGNC	ENSG00000142185				82	0	0	78	11	12.3596
KRTAP12-2	0	genome.wustl.edu	37	21	46086510	46086510	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	21	46086510	46086510	G	-	DEL	KRTAP12-2	ENST00000360770	human	ensembl	74_37	-1	known	frame_shift_del	c.294	p.S99fs	0.037	pfam_KRTAP_PMG	pfam_KRTAP_PMG	-	no_errors	KRTAP12-2	HGNC	ENSG00000221864				98	0	0	66	13	16.4557
LSS	0	genome.wustl.edu	37	21	47626623	47626623	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	21	47626623	47626623	C	-	DEL	LSS	ENST00000356396	human	ensembl	74_37	-1	known	frame_shift_del	c.1527	p.H510fs	0.000	superfamily_Terpenoid_cyclase/PrenylTrfase,tigrfam_Squalene_cyclase	pfam_Prenyltrans,superfamily_Terpenoid_cyclase/PrenylTrfase,tigrfam_Squalene_cyclase	-	no_errors	LSS	HGNC	ENSG00000160285				104	0	0	74	20	21.2766
ZDHHC8	0	genome.wustl.edu	37	22	20130522	20130522	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	22	20130522	20130522	C	-	DEL	ZDHHC8	ENST00000405930	human	ensembl	74_37	+1	known	frame_shift_del	c.1369	p.T459fs	0.997	NULL	pfam_Znf_DHHC_palmitoyltrfase,superfamily_Plexin-like_fold,pfscan_Znf_DHHC_palmitoyltrfase	-	no_errors	ZDHHC8	HGNC	ENSG00000099904				45	0	0	18	21	53.8462
BMS1P20	0	genome.wustl.edu	37	22	22661173	22661174	+	RNA	INS	-	-	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	22	22661173	22661174	-	C	INS	BMS1P20	ENST00000426066	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.833:0.876	-	-	-	no_errors	BMS1P20	HGNC	ENSG00000236850				62	0	0	44	8	15.3846
TNRC6B	0	genome.wustl.edu	37	22	40681767	40681767	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	22	40681767	40681767	C	-	DEL	TNRC6B	ENST00000454349	human	ensembl	74_37	+1	known	frame_shift_del	c.3701	p.Q1236fs	1.000	NULL	pfam_Argonaute_hook_dom,superfamily_UBA-like	-	no_errors	TNRC6B	HGNC	ENSG00000100354				356	0	0	225	59	20.7746
ADSL	0	genome.wustl.edu	37	22	40756478	40756478	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	22	40756478	40756478	G	-	DEL	ADSL	ENST00000454266	human	ensembl	74_37	+1	known	frame_shift_del	c.816	p.A274fs	1.000	pfam_Fumarate_lyase_N,superfamily_L-Aspartase-like,prints_Fumarate_lyase_fam,tigrfam_Pur_lyase	pfam_Fumarate_lyase_N,pfam_AdenyloSucc_lyase_C,superfamily_L-Aspartase-like,prints_Fumarate_lyase_fam,tigrfam_Pur_lyase	-	no_errors	ADSL	HGNC	ENSG00000239900				100	0	0	75	11	12.7907
MKL1	0	genome.wustl.edu	37	22	40816542	40816542	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	22	40816542	40816542	G	-	DEL	MKL1	ENST00000355630	human	ensembl	74_37	-1	known	frame_shift_del	c.920	p.P307fs	0.025	NULL	pfam_RPEL_repeat,pfam_SAP_dom,smart_RPEL_repeat,smart_SAP_dom,pfscan_RPEL_repeat,pfscan_SAP_dom	-	no_errors	MKL1	HGNC	ENSG00000196588				134	0	0	116	9	7.2
TCF20	0	genome.wustl.edu	37	22	42609770	42609771	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	22	42609770	42609771	-	T	INS	TCF20	ENST00000359486	human	ensembl	74_37	-1	known	frame_shift_ins	c.1542_1541	p.M515fs	0.001:0.996	NULL	smart_Znf_PHD	-	no_errors	TCF20	HGNC	ENSG00000100207				524	0	0	396	84	17.5
TCF20	0	genome.wustl.edu	37	22	42610775	42610776	+	In_Frame_Ins	INS	-	-	TGC			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	22	42610775	42610776	-	TGC	INS	TCF20	ENST00000359486	human	ensembl	74_37	-1	known	in_frame_ins	c.537_536	p.180in_frame_insQ	0.991:1.000	NULL	smart_Znf_PHD	-	no_errors	TCF20	HGNC	ENSG00000100207				87	0	0	74	10	11.9048
EFCAB6	0	genome.wustl.edu	37	22	43924633	43924634	+	RNA	INS	-	-	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	22	43924633	43924634	-	T	INS	EFCAB6	ENST00000461800	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001:0.000	-	-	-	no_errors	EFCAB6	HGNC	ENSG00000186976				48	0	0	27	8	22.8571
PNPLA5	0	genome.wustl.edu	37	22	44287049	44287050	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	22	44287049	44287050	-	G	INS	PNPLA5	ENST00000216177	human	ensembl	74_37	-1	known	frame_shift_ins	c.319_318	p.D106fs	0.002:0.000	pfam_Patatin/PLipase_A2-rel,superfamily_Acyl_Trfase/lysoPLipase	pfam_Patatin/PLipase_A2-rel,superfamily_Acyl_Trfase/lysoPLipase	-	no_errors	PNPLA5	HGNC	ENSG00000100341				40	0	0	32	6	15.7895
SBF1	0	genome.wustl.edu	37	22	50898756	50898756	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	22	50898756	50898756	G	-	DEL	SBF1	ENST00000380817	human	ensembl	74_37	-1	known	frame_shift_del	c.3228	p.S1077fs	0.039	NULL	pfam_SBF2,pfam_DENN_dom,pfam_uDENN_dom,pfam_Myotubularin-like_Pase_dom,pfam_dDENN_dom,pfam_GRAM,pfam_Pleckstrin_homology,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,smart_GRAM,smart_Pleckstrin_homology,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom,pfscan_Pleckstrin_homology	-	no_errors	SBF1	HGNC	ENSG00000100241				118	0	0	102	15	12.8205
ACR	0	genome.wustl.edu	37	22	51183154	51183154	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	22	51183154	51183154	G	-	DEL	ACR	ENST00000216139	human	ensembl	74_37	+1	known	frame_shift_del	c.785	p.V264fs	1.000	pirsf_Pept_S1A_acrosin,pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1	pirsf_Pept_S1A_acrosin,pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,prints_Peptidase_S1A,pfscan_Peptidase_S1	-	no_errors	ACR	HGNC	ENSG00000100312				49	0	0	31	11	26.1905
RPL23AP82	0	genome.wustl.edu	37	22	51237600	51237600	+	RNA	DEL	A	A	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	22	51237600	51237600	A	-	DEL	RPL23AP82	ENST00000462238	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.477	-	-	-	no_errors	AC002055.4	Clone_based_vega_gene	ENSG00000184319				133	0	0	152	10	6.17284
MYH15	0	genome.wustl.edu	37	3	108172981	108172981	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	3	108172981	108172981	A	-	DEL	MYH15	ENST00000273353	human	ensembl	74_37	-1	known	frame_shift_del	c.2331	p.F777fs	0.927	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,superfamily_Lambda_DNA-bd_dom,smart_Myosin_head_motor_dom,prints_Myosin_head_motor_dom	-	no_errors	MYH15	HGNC	ENSG00000144821				106	0	0	93	23	19.8276
MORC1	0	genome.wustl.edu	37	3	108682419	108682419	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	3	108682419	108682419	T	-	DEL	MORC1	ENST00000232603	human	ensembl	74_37	-1	known	frame_shift_del	c.2641	p.I881fs	0.062	NULL	pfam_Znf_CW,superfamily_HATPase_ATP-bd,pfscan_Znf_CW	-	no_errors	MORC1	HGNC	ENSG00000114487				112	0	0	92	25	21.3675
WDR52	0	genome.wustl.edu	37	3	113085121	113085121	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	3	113085121	113085121	T	-	DEL	WDR52	ENST00000393845	human	ensembl	74_37	-1	known	frame_shift_del	c.2480	p.N827fs	0.990	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR52	HGNC	ENSG00000206530				82	0	0	76	14	15.5556
ZBTB20	0	genome.wustl.edu	37	3	114058003	114058003	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	3	114058003	114058003	G	-	DEL	ZBTB20	ENST00000474710	human	ensembl	74_37	-1	known	frame_shift_del	c.2075	p.P692fs	0.678	NULL	pfam_BTB_POZ,pfam_Znf_C2H2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB20	HGNC	ENSG00000181722				106	0	0	69	17	19.7674
B3GALNT1	0	genome.wustl.edu	37	3	160803879	160803879	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	3	160803879	160803879	T	-	DEL	B3GALNT1	ENST00000320474	human	ensembl	74_37	-1	known	frame_shift_del	c.664	p.T222fs	0.008	pfam_Glyco_trans_31,pfam_Fringe-like	pfam_Glyco_trans_31,pfam_Fringe-like	-	no_errors	B3GALNT1	HGNC	ENSG00000169255				74	0	0	66	16	19.5122
MYNN	0	genome.wustl.edu	37	3	169504444	169504444	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	3	169504444	169504444	T	-	DEL	MYNN	ENST00000349841	human	ensembl	74_37	+1	known	frame_shift_del	c.1811	p.L606fs	1.000	NULL	pfam_Znf_C2H2,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	MYNN	HGNC	ENSG00000085274				49	0	0	47	9	16.0714
TBC1D5	0	genome.wustl.edu	37	3	17300085	17300086	+	Splice_Site	INS	-	-	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	3	17300085	17300086	-	A	INS	TBC1D5	ENST00000253692	human	ensembl	74_37	-1	known	splice_site_ins	c.1246-3_1246-2	e14-2	1.000:0.995	-	-	-	no_errors	TBC1D5	HGNC	ENSG00000131374				143	1	0.694444	117	20	14.5985
NEK10	0	genome.wustl.edu	37	3	27157620	27157621	+	Splice_Site	INS	-	-	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	3	27157620	27157621	-	A	INS	NEK10	ENST00000383771	human	ensembl	74_37	-1	known	splice_site_ins	c.1268-3_1268-2	e13-2	1.000:1.000	-	-	-	no_errors	NEK10	HGNC	ENSG00000163491				65	0	0	41	10	19.6078
TGFBR2	0	genome.wustl.edu	37	3	30691872	30691873	+	Frame_Shift_Del	DEL	AA	AA	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	3	30691872	30691873	AA	-	DEL	TGFBR2	ENST00000359013	human	ensembl	74_37	+1	known	frame_shift_del	c.449_450	p.K153fs	1.000:0.990	pirsf_Transform_growth_fac-b_typ-2,pfam_Transforming_GF_b_rcpt_2_ecto,prints_TGFB_receptor	pirsf_Transform_growth_fac-b_typ-2,pfam_Transforming_GF_b_rcpt_2_ecto,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_TGFB_receptor,pfscan_Prot_kinase_dom	-	no_errors	TGFBR2	HGNC	ENSG00000163513				177	1	0.561798	143	70	32.8638
ARPP21	0	genome.wustl.edu	37	3	35748501	35748501	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	3	35748501	35748501	A	-	DEL	ARPP21	ENST00000417925	human	ensembl	74_37	+1	known	frame_shift_del	c.722	p.G243fs	1.000	NULL	pfam_R3H_ss-bd,smart_R3H_ss-bd,pfscan_R3H_ss-bd	-	no_errors	ARPP21	HGNC	ENSG00000172995				204	0	0	175	13	6.91489
CISH	0	genome.wustl.edu	37	3	50645819	50645821	+	In_Frame_Del	DEL	AGG	AGG	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	AGG	AGG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	3	50645819	50645821	AGG	-	DEL	CISH	ENST00000443053	human	ensembl	74_37	-1	known	in_frame_del	c.277_275	p.S92in_frame_del	1.000:0.940:0.998	NULL	pfam_SH2,pfam_SOCS_C,smart_SH2,smart_SOCS_C,pfscan_SOCS_C,pfscan_SH2,prints_SH2	-	no_errors	CISH	HGNC	ENSG00000114737				74	0	0	54	13	19.403
VPRBP	0	genome.wustl.edu	37	3	51457448	51457448	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	3	51457448	51457448	T	-	DEL	VPRBP	ENST00000335891	human	ensembl	74_37	-1	known	frame_shift_del	c.1629	p.K543fs	1.000	superfamily_ARM-type_fold	superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_LisH_dimerisation,pfscan_LisH_dimerisation	-	no_errors	VPRBP	HGNC	ENSG00000145041				436	0	0	296	80	21.2766
INTS12	0	genome.wustl.edu	37	4	106621121	106621122	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	4	106621121	106621122	-	A	INS	INTS12	ENST00000340139	human	ensembl	74_37	-1	known	frame_shift_ins	c.42_41	p.L14fs	1.000:1.000	NULL	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	INTS12	HGNC	ENSG00000138785				279	0	0	269	57	17.4847
CFI	0	genome.wustl.edu	37	4	110687927	110687927	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	4	110687927	110687927	T	-	DEL	CFI	ENST00000394634	human	ensembl	74_37	-1	known	frame_shift_del	c.111	p.K37fs	0.482	NULL	pfam_Peptidase_S1,pfam_LDrepeatLR_classA_rpt,pfam_SRCR,superfamily_Trypsin-like_Pept_dom,superfamily_Srcr_rcpt-rel,superfamily_LDrepeatLR_classA_rpt,smart_FacI_MAC,smart_Srcr_rcpt-rel,smart_LDrepeatLR_classA_rpt,smart_Peptidase_S1,pfscan_LDrepeatLR_classA_rpt,pfscan_SRCR,pfscan_Peptidase_S1,prints_Peptidase_S1A,prints_LDrepeatLR_classA_rpt	-	no_errors	CFI	HGNC	ENSG00000205403				108	0	0	104	26	20
LARP7	0	genome.wustl.edu	37	4	113578483	113578483	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	4	113578483	113578483	A	-	DEL	LARP7	ENST00000324052	human	ensembl	74_37	+1	known	frame_shift_del	c.1749	p.*583fs	1.000	NULL	pfam_RRM_3,pfam_Lupus_La_RNA-bd,pfam_RRM_dom,smart_Lupus_La_RNA-bd,smart_RRM_dom,pfscan_Lupus_La_RNA-bd,pfscan_RRM_dom,prints_Lupus_La	-	no_errors	LARP7	HGNC	ENSG00000174720				21	0	0	11	6	35.2941
NR3C2	0	genome.wustl.edu	37	4	149002528	149002528	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	4	149002528	149002528	C	-	DEL	NR3C2	ENST00000355292	human	ensembl	74_37	-1	known	frame_shift_del	c.2934	p.N979fs	1.000	superfamily_Nucl_hormone_rcpt_ligand-bd	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Znf_hrmn_rcpt	-	no_errors	NR3C2	HGNC	ENSG00000151623				46	0	0	42	11	20.7547
PLRG1	0	genome.wustl.edu	37	4	155468218	155468219	+	Splice_Site	INS	-	-	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	4	155468218	155468219	-	A	INS	PLRG1	ENST00000393905	human	ensembl	74_37	-1	known	splice_site_ins	c.260-3_260-2	e4-2	0.995:0.501	-	-	-	no_errors	PLRG1	HGNC	ENSG00000171566				90	0	0	46	6	11.5385
TMA16	0	genome.wustl.edu	37	4	164428219	164428219	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	4	164428219	164428219	A	-	DEL	TMA16	ENST00000358572	human	ensembl	74_37	+1	known	frame_shift_del	c.38	p.V16fs	1.000	pfam_Tma16	pfam_Tma16	-	no_errors	TMA16	HGNC	ENSG00000198498				14	0	0	9	2	18.1818
NEK1	0	genome.wustl.edu	37	4	170428203	170428203	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	4	170428203	170428203	T	-	DEL	NEK1	ENST00000507142	human	ensembl	74_37	-1	known	frame_shift_del	c.1992	p.V665fs	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	NEK1	HGNC	ENSG00000137601				31	0	0	17	14	45.1613
IRF2	0	genome.wustl.edu	37	4	185339758	185339758	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	4	185339758	185339758	T	-	DEL	IRF2	ENST00000393593	human	ensembl	74_37	-1	known	frame_shift_del	c.292	p.S98fs	1.000	pfam_Interferon_reg_fact_DNA-bd_dom,smart_Interferon_reg_fact_DNA-bd_dom,pirsf_Interferon_reg_fac-1/2	pfam_Interferon_reg_fact_DNA-bd_dom,smart_Interferon_reg_fact_DNA-bd_dom,pirsf_Interferon_reg_fac-1/2,prints_Interferon_reg_fact_DNA-bd_dom	-	no_errors	IRF2	HGNC	ENSG00000168310				103	0	0	65	28	30.1075
OCIAD1	0	genome.wustl.edu	37	4	48859371	48859372	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	4	48859371	48859372	-	A	INS	OCIAD1	ENST00000264312	human	ensembl	74_37	+1	known	frame_shift_ins	c.689_690	p.E233fs	1.000:0.300	NULL	pfam_OCIA	-	no_errors	OCIAD1	HGNC	ENSG00000109180				130	0	0	103	8	7.20721
OCIAD2	0	genome.wustl.edu	37	4	48894833	48894833	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	4	48894833	48894833	A	-	DEL	OCIAD2	ENST00000508632	human	ensembl	74_37	-1	known	frame_shift_del	c.339	p.F113fs	0.890	pfam_OCIA	pfam_OCIA	-	no_errors	OCIAD2	HGNC	ENSG00000145247				389	0	0	305	76	19.9475
TECRL	0	genome.wustl.edu	37	4	65274998	65274999	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	4	65274998	65274999	-	A	INS	TECRL	ENST00000381210	human	ensembl	74_37	-1	known	frame_shift_ins	c.72_71	p.I25fs	0.000:0.000	NULL	pfam_3-oxo-5_a-steroid_4-DH_C,pfscan_3-oxo-5_a-steroid_4-DH_C	-	no_errors	TECRL	HGNC	ENSG00000205678				221	1	0.45045	173	43	19.9074
SDAD1	0	genome.wustl.edu	37	4	76891521	76891521	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	4	76891521	76891521	T	-	DEL	SDAD1	ENST00000356260	human	ensembl	74_37	-1	known	frame_shift_del	c.824	p.K275fs	1.000	superfamily_ARM-type_fold	pfam_SDA1_dom,pfam_Uncharacterised_NUC130/133_N,superfamily_ARM-type_fold	-	no_errors	SDAD1	HGNC	ENSG00000198301				109	0	0	63	24	27.5862
FGF5	0	genome.wustl.edu	37	4	81196142	81196142	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	4	81196142	81196142	A	-	DEL	FGF5	ENST00000312465	human	ensembl	74_37	+1	known	frame_shift_del	c.435	p.G148fs	1.000	pfam_Fibroblast_GF_fam,superfamily_Cytokine_IL1-like,smart_Fibroblast_GF_fam,prints_Fibroblast_GF_fam,prints_IL-1_fam/FGF_fam	pfam_Fibroblast_GF_fam,superfamily_Cytokine_IL1-like,smart_Fibroblast_GF_fam,prints_Fibroblast_GF_fam,prints_IL-1_fam/FGF_fam	-	no_errors	FGF5	HGNC	ENSG00000138675				61	0	0	65	10	13.3333
HNRNPD	0	genome.wustl.edu	37	4	83276431	83276431	+	RNA	DEL	A	A	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	4	83276431	83276431	A	-	DEL	HNRNPD	ENST00000508119	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	HNRNPD	HGNC	ENSG00000138668				41	0	0	29	10	25.641
AFF1	0	genome.wustl.edu	37	4	88035715	88035715	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	4	88035715	88035715	C	-	DEL	AFF1	ENST00000395146	human	ensembl	74_37	+1	known	frame_shift_del	c.1730	p.R579fs	0.000	pfam_TF_AF4/FMR2	pfam_TF_AF4/FMR2	-	no_errors	AFF1	HGNC	ENSG00000172493				24	0	0	13	4	23.5294
HERC6	0	genome.wustl.edu	37	4	89349778	89349778	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	4	89349778	89349778	A	-	DEL	HERC6	ENST00000264346	human	ensembl	74_37	+1	known	frame_shift_del	c.1982	p.K663fs	0.001	superfamily_HECT	pfam_HECT,pfam_Reg_chr_condens,superfamily_HECT,superfamily_RCC1/BLIP-II,smart_HECT,pfscan_HECT,pfscan_Reg_chr_condens,prints_Reg_chr_condens	-	no_errors	HERC6	HGNC	ENSG00000138642				25	0	0	23	3	11.5385
CTNND2	0	genome.wustl.edu	37	5	11384949	11384949	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	5	11384949	11384949	G	-	DEL	CTNND2	ENST00000304623	human	ensembl	74_37	-1	known	frame_shift_del	c.1005	p.T336fs	0.973	NULL	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	CTNND2	HGNC	ENSG00000169862				21	0	0	35	8	18.6047
AQPEP	0	genome.wustl.edu	37	5	115336805	115336805	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	5	115336805	115336805	A	-	DEL	AQPEP	ENST00000357872	human	ensembl	74_37	+1	known	frame_shift_del	c.1689	p.N565fs	0.995	NULL	pfam_Peptidase_M1_N,prints_Peptidase_M1_N	-	no_errors	AQPEP	Uniprot_gn	ENSG00000172901				213	0	0	164	40	19.6078
H2AFY	0	genome.wustl.edu	37	5	134670603	134670603	+	RNA	DEL	T	T	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	5	134670603	134670603	T	-	DEL	H2AFY	ENST00000360597	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.730	-	-	-	no_errors	H2AFY	HGNC	ENSG00000113648				115	1	0.862069	74	22	22.9167
PKD2L2	0	genome.wustl.edu	37	5	137243584	137243584	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	5	137243584	137243584	T	-	DEL	PKD2L2	ENST00000508883	human	ensembl	74_37	+1	known	frame_shift_del	c.1129	p.F378fs	1.000	pfam_PKD1_2_channel,pfam_Ion_trans_dom,prints_PKD_2	pfam_PKD1_2_channel,pfam_Ion_trans_dom,prints_PKD_2	-	no_errors	PKD2L2	HGNC	ENSG00000078795				14	0	0	6	2	25
CTNNA1	0	genome.wustl.edu	37	5	138253516	138253516	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	5	138253516	138253516	A	-	DEL	CTNNA1	ENST00000302763	human	ensembl	74_37	+1	known	frame_shift_del	c.1475	p.K493fs	1.000	pfam_Vinculin/catenin,superfamily_Vinculin/catenin	pfam_Vinculin/catenin,superfamily_Vinculin/catenin,prints_Alpha_catenin,prints_Vinculin	-	no_errors	CTNNA1	HGNC	ENSG00000044115				469	0	0	358	107	23.0108
PCDHB13	0	genome.wustl.edu	37	5	140594607	140594607	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	5	140594607	140594607	A	-	DEL	PCDHB13	ENST00000341948	human	ensembl	74_37	+1	known	frame_shift_del	c.912	p.K306fs	0.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB13	HGNC	ENSG00000187372				240	1	0.414938	167	66	28.3262
TRIO	0	genome.wustl.edu	37	5	14487780	14487781	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	5	14487780	14487781	-	C	INS	TRIO	ENST00000344204	human	ensembl	74_37	+1	known	frame_shift_ins	c.7043_7044	p.V2351fs	1.000:1.000	superfamily_Capsid/spike_ssDNA_virus	pfam_DH-domain,pfam_Prot_kinase_dom,pfam_Spectrin_repeat,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ig_I-set,pfam_SH3_domain,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_SH3_domain,superfamily_CRAL-TRIO_dom,superfamily_Capsid/spike_ssDNA_virus,smart_CRAL-TRIO_dom,smart_Spectrin/alpha-actinin,smart_DH-domain,smart_Pleckstrin_homology,smart_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_CRAL-TRIO_dom,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,pfscan_DH-domain	-	no_errors	TRIO	HGNC	ENSG00000038382				30	0	0	25	9	26.4706
RBM27	0	genome.wustl.edu	37	5	145647320	145647320	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	5	145647320	145647320	A	-	DEL	RBM27	ENST00000265271	human	ensembl	74_37	+1	known	frame_shift_del	c.2440	p.K816fs	1.000	NULL	pfam_PWI_dom,pfam_Znf_CCCH,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBM27	HGNC	ENSG00000091009				116	0	0	98	22	18.3333
CD74	0	genome.wustl.edu	37	5	149786837	149786838	+	Frame_Shift_Del	DEL	AG	AG	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	5	149786837	149786838	AG	-	DEL	CD74	ENST00000009530	human	ensembl	74_37	-1	known	frame_shift_del	c.176_175	p.L59fs	1.000:0.998	pfam_MHC_II-assoc_invar/CLIP_MHC-bd,pirsf_MHC_II-assoc_invar_chain,prints_MHC_II-assoc_invar_chain	pfam_MHC_II-assoc_invar/CLIP_MHC-bd,pfam_MHC_II-assoc_invariant_trimer,pfam_Thyroglobulin_1,superfamily_MHC_II-assoc_invariant_trimer,superfamily_Thyroglobulin_1,smart_Thyroglobulin_1,pirsf_MHC_II-assoc_invar_chain,pfscan_Thyroglobulin_1,prints_MHC_II-assoc_invar_chain	-	no_errors	CD74	HGNC	ENSG00000019582				35	0	0	21	2	8.69565
LARP1	0	genome.wustl.edu	37	5	154173389	154173390	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	5	154173389	154173390	-	C	INS	LARP1	ENST00000336314	human	ensembl	74_37	+1	known	frame_shift_ins	c.667_668	p.T226fs	0.998:0.999	NULL	pfam_Lupus_La_RNA-bd,smart_Lupus_La_RNA-bd,smart_DM15,pfscan_Lupus_La_RNA-bd	-	no_errors	LARP1	HGNC	ENSG00000155506				447	1	0.223214	352	39	9.97442
HNRNPH1	0	genome.wustl.edu	37	5	179044087	179044089	+	In_Frame_Del	DEL	AAG	AAG	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	AAG	AAG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	5	179044087	179044089	AAG	-	DEL	HNRNPH1	ENST00000356731	human	ensembl	74_37	-1	known	in_frame_del	c.1082_1080	p.F360in_frame_del	1.000:1.000:1.000	smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,pfam_Znf_CHHC,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	HNRNPH1	HGNC	ENSG00000169045				220	0	0	161	24	12.973
IRX2	0	genome.wustl.edu	37	5	2749790	2749793	+	Frame_Shift_Del	DEL	CGTT	CGTT	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	CGTT	CGTT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	5	2749790	2749793	CGTT	-	DEL	IRX2	ENST00000302057	human	ensembl	74_37	-1	known	frame_shift_del	c.361_358	p.N120fs	1.000:1.000:1.000:1.000	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,smart_Iroquois_homeo,pfscan_Homeobox_dom	-	no_errors	IRX2	HGNC	ENSG00000170561				114	0	0	68	38	35.8491
NIPBL	0	genome.wustl.edu	37	5	36985083	36985083	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	5	36985083	36985083	A	-	DEL	NIPBL	ENST00000282516	human	ensembl	74_37	+1	known	frame_shift_del	c.1801	p.K603fs	1.000	NULL	superfamily_ARM-type_fold	-	no_errors	NIPBL	HGNC	ENSG00000164190				127	0	0	131	32	19.6319
NIPBL	0	genome.wustl.edu	37	5	36985528	36985528	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	5	36985528	36985528	A	-	DEL	NIPBL	ENST00000282516	human	ensembl	74_37	+1	known	frame_shift_del	c.2246	p.N751fs	0.994	NULL	superfamily_ARM-type_fold	-	no_errors	NIPBL	HGNC	ENSG00000164190				77	0	0	83	19	18.6275
WDR70	0	genome.wustl.edu	37	5	37727018	37727019	+	Frame_Shift_Del	DEL	CT	CT	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	CT	CT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	5	37727018	37727019	CT	-	DEL	WDR70	ENST00000265107	human	ensembl	74_37	+1	known	frame_shift_del	c.1748_1749	p.S585fs	1.000:0.985	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR70	HGNC	ENSG00000082068				172	0	0	176	32	15.3846
RICTOR	0	genome.wustl.edu	37	5	38959432	38959432	+	RNA	DEL	A	A	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	5	38959432	38959432	A	-	DEL	RICTOR	ENST00000503698	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.004	-	-	-	no_errors	RICTOR	HGNC	ENSG00000164327				28	0	0	13	7	35
FYB	0	genome.wustl.edu	37	5	39119140	39119141	+	Splice_Site	INS	-	-	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	5	39119140	39119141	-	A	INS	FYB	ENST00000540520	human	ensembl	74_37	-1	known	splice_site_ins	c.2269-3_2269-2	e16-2	1.000:0.329	-	-	-	no_errors	FYB	HGNC	ENSG00000082074				18	0	0	13	5	27.7778
FYB	0	genome.wustl.edu	37	5	39202091	39202091	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	5	39202091	39202091	C	-	DEL	FYB	ENST00000540520	human	ensembl	74_37	-1	known	frame_shift_del	c.1002	p.P335fs	0.001	NULL	pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain	-	no_errors	FYB	HGNC	ENSG00000082074				108	0	0	107	14	11.5702
FYB	0	genome.wustl.edu	37	5	39203039	39203040	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	5	39203039	39203040	-	C	INS	FYB	ENST00000540520	human	ensembl	74_37	-1	known	frame_shift_ins	c.54_53	p.N19fs	0.998:0.999	NULL	pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain	-	no_errors	FYB	HGNC	ENSG00000082074				95	0	0	90	41	31.2977
AP3B1	0	genome.wustl.edu	37	5	77334907	77334907	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	5	77334907	77334907	T	-	DEL	AP3B1	ENST00000255194	human	ensembl	74_37	-1	known	frame_shift_del	c.2769	p.K923fs	0.419	pirsf_AP3_beta	pfam_Clathrin/coatomer_adapt-like_N,superfamily_ARM-type_fold,pirsf_AP3_beta	-	no_errors	AP3B1	HGNC	ENSG00000132842				68	0	0	72	18	20
JMY	0	genome.wustl.edu	37	5	78610473	78610473	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	5	78610473	78610473	C	-	DEL	JMY	ENST00000396137	human	ensembl	74_37	+1	known	frame_shift_del	c.2458	p.P821fs	0.995	NULL	pfscan_WH2_dom	-	no_errors	JMY	HGNC	ENSG00000152409				30	0	0	16	5	23.8095
MSH3	0	genome.wustl.edu	37	5	79970915	79970915	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	5	79970915	79970915	A	-	DEL	MSH3	ENST00000265081	human	ensembl	74_37	+1	known	frame_shift_del	c.1141	p.K383fs	0.982	pfam_DNA_mmatch_repair_MutS_con_dom,superfamily_DNA_mmatch_repair_MutS_con_dom	pfam_DNA_mismatch_repair_MutS_C,pfam_DNA_mismatch_repair_MutS_core,pfam_DNA_mmatch_repair_MutS_con_dom,pfam_DNA_mismatch_repair_MutS-lik_N,pfam_DNA_mismatch_repair_MutS_clamp,superfamily_DNA_mismatch_repair_MutS_core,superfamily_P-loop_NTPase,superfamily_DNA_mismatch_repair_MutS_N,superfamily_DNA_mmatch_repair_MutS_con_dom,smart_DNA_mismatch_repair_MutS_core,smart_DNA_mismatch_repair_MutS_C	-	no_errors	MSH3	HGNC	ENSG00000113318				283	1	0.352113	247	66	21.0863
GRIK2	0	genome.wustl.edu	37	6	102503432	102503432	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	6	102503432	102503432	A	-	DEL	GRIK2	ENST00000421544	human	ensembl	74_37	+1	known	frame_shift_del	c.2539	p.N849fs	1.000	NULL	pfam_ANF_lig-bd_rcpt,pfam_Iontro_glu_rcpt,pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,superfamily_Peripla_BP_I,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIK2	HGNC	ENSG00000164418				177	0	0	176	33	15.7895
SYCP2L	0	genome.wustl.edu	37	6	10935386	10935386	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	6	10935386	10935386	T	-	DEL	SYCP2L	ENST00000283141	human	ensembl	74_37	+1	known	frame_shift_del	c.1779	p.L595fs	0.002	NULL	NULL	-	no_errors	SYCP2L	HGNC	ENSG00000153157				107	0	0	103	17	14.1667
NCOA7	0	genome.wustl.edu	37	6	126176317	126176317	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	6	126176317	126176317	A	-	DEL	NCOA7	ENST00000368357	human	ensembl	74_37	+1	known	frame_shift_del	c.202	p.K70fs	1.000	NULL	pfam_TLDc,pfam_LysM_dom,pfam_GRAM,smart_LysM_dom,smart_TLDc	-	no_errors	NCOA7	HGNC	ENSG00000111912				348	1	0.286533	349	141	28.7755
ECHDC1	0	genome.wustl.edu	37	6	127652056	127652056	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	6	127652056	127652056	T	-	DEL	ECHDC1	ENST00000531967	human	ensembl	74_37	-1	known	frame_shift_del	c.136	p.T46fs	0.996	NULL	pfam_Crotonase_core_superfam	-	no_errors	ECHDC1	HGNC	ENSG00000093144				67	0	0	67	23	25.5556
AKAP7	0	genome.wustl.edu	37	6	131481276	131481276	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	6	131481276	131481276	A	-	DEL	AKAP7	ENST00000368123	human	ensembl	74_37	+1	known	frame_shift_del	c.163	p.K57fs	0.449	pfam_Kinase-A_anchor_nucl_local_sig	pfam_Kinase-A_anchor_nucl_local_sig,pfam_Kinase-A_anchor_RI-RII-bd_dom,superfamily_RNA_ligase/cNuc_Pdiesterase	-	no_errors	AKAP7	HGNC	ENSG00000118507				84	0	0	69	33	32.3529
HECA	0	genome.wustl.edu	37	6	139488146	139488147	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	6	139488146	139488147	-	G	INS	HECA	ENST00000367658	human	ensembl	74_37	+1	known	frame_shift_ins	c.997_998	p.H336fs	1.000:1.000	superfamily_Glycoside_hydrolase_SF	superfamily_Glycoside_hydrolase_SF	-	no_errors	HECA	HGNC	ENSG00000112406				145	0	0	171	27	13.6364
AKAP12	0	genome.wustl.edu	37	6	151670523	151670524	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	6	151670523	151670524	-	A	INS	AKAP12	ENST00000253332	human	ensembl	74_37	+1	known	frame_shift_ins	c.997_998	p.V335fs	0.730:0.713	NULL	pfam_Pkinase-A_anch_WSK-motif,pfam_RII_binding_1	-	no_errors	AKAP12	HGNC	ENSG00000131016				104	0	0	99	19	16.1017
SCAF8	0	genome.wustl.edu	37	6	155148344	155148344	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	6	155148344	155148344	C	-	DEL	SCAF8	ENST00000367186	human	ensembl	74_37	+1	known	frame_shift_del	c.2308	p.P771fs	1.000	NULL	pfam_RNA_pol_II-bd,pfam_RRM_dom,superfamily_ENTH_VHS,smart_CID_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	SCAF8	HGNC	ENSG00000213079				296	0	0	327	47	12.5668
ARID1B	0	genome.wustl.edu	37	6	157527398	157527398	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	6	157527398	157527398	A	-	DEL	ARID1B	ENST00000367148	human	ensembl	74_37	+1	known	frame_shift_del	c.5243	p.A1750fs	1.000	NULL	pfam_DUF3518,pfam_ARID/BRIGHT_DNA-bd,superfamily_ARID/BRIGHT_DNA-bd,superfamily_ARM-type_fold,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID1B	HGNC	ENSG00000049618				249	0	0	400	41	9.29705
DLL1	0	genome.wustl.edu	37	6	170594674	170594674	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	6	170594674	170594674	C	-	DEL	DLL1	ENST00000366756	human	ensembl	74_37	-1	known	frame_shift_del	c.845	p.G282fs	1.000	smart_EG-like_dom	pfam_EG-like_dom,pfam_Notch_ligand_N,pfam_DSL,pfam_EGF_extracell,pfam_EGF-like_Ca-bd_dom,smart_DSL,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_DSL,pfscan_EG-like_dom	-	no_errors	DLL1	HGNC	ENSG00000198719				131	0	0	129	21	14
RBM24	0	genome.wustl.edu	37	6	17292449	17292450	+	RNA	DEL	AA	AA	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	6	17292449	17292450	AA	-	DEL	RBM24	ENST00000508508	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.915:0.719	-	-	-	no_errors	RBM24	HGNC	ENSG00000112183				50	0	0	53	22	29.3333
ZKSCAN4	0	genome.wustl.edu	37	6	28212907	28212908	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	6	28212907	28212908	-	T	INS	ZKSCAN4	ENST00000377294	human	ensembl	74_37	-1	known	frame_shift_ins	c.1625_1624	p.T542fs	0.000:0.001	pfscan_Znf_C2H2	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZKSCAN4	HGNC	ENSG00000187626				204	1	0.487805	193	74	27.7154
ZNF311	0	genome.wustl.edu	37	6	28963809	28963809	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	6	28963809	28963809	T	-	DEL	ZNF311	ENST00000377179	human	ensembl	74_37	-1	known	frame_shift_del	c.970	p.T324fs	0.268	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF311	HGNC	ENSG00000197935				81	0	0	88	16	15.3846
OR5V1	0	genome.wustl.edu	37	6	29323702	29323702	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	6	29323702	29323702	T	-	DEL	OR5V1	ENST00000377154	human	ensembl	74_37	-1	known	frame_shift_del	c.271	p.S91fs	0.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR5V1	HGNC	ENSG00000243729				138	0	0	134	72	34.9515
PPP1R10	0	genome.wustl.edu	37	6	30572795	30572795	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	6	30572795	30572795	T	-	DEL	PPP1R10	ENST00000376511	human	ensembl	74_37	-1	known	frame_shift_del	c.930	p.V311fs	0.999	NULL	pfam_TFIIS_N,pfam_Znf_CCCH,superfamily_TFIIS_N,smart_TFIIS/CRSP70_N_sub,smart_Znf_CCCH	-	no_errors	PPP1R10	HGNC	ENSG00000204569				45	0	0	78	12	13.3333
DDR1	0	genome.wustl.edu	37	6	30863250	30863251	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	6	30863250	30863251	-	C	INS	DDR1	ENST00000376575	human	ensembl	74_37	+1	known	frame_shift_ins	c.1583_1584	p.T531fs	1.000:1.000	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Kinase-like_dom,superfamily_Galactose-bd-like,smart_Coagulation_fac_5/8-C_type_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	DDR1	HGNC	ENSG00000204580				316	2	0.628931	432	24	5.26316
PSORS1C1	0	genome.wustl.edu	37	6	31106501	31106501	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	6	31106501	31106501	C	-	DEL	PSORS1C1	ENST00000259881	human	ensembl	74_37	+1	known	frame_shift_del	c.112	p.H40fs	0.004	NULL	NULL	-	no_errors	PSORS1C1	HGNC	ENSG00000204540				165	0	0	125	78	38.4236
DDX39B	0	genome.wustl.edu	37	6	31504445	31504446	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	6	31504445	31504446	-	A	INS	DDX39B	ENST00000417556	human	ensembl	74_37	-1	known	frame_shift_ins	c.493_492	p.G164fs	1.000:1.000	pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX39B	HGNC	ENSG00000198563				67	0	0	62	7	10.1449
PRRC2A	0	genome.wustl.edu	37	6	31602641	31602641	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	6	31602641	31602641	C	-	DEL	PRRC2A	ENST00000376007	human	ensembl	74_37	+1	known	frame_shift_del	c.5047	p.K1685fs	0.998	NULL	pfam_BAT2_N	-	no_errors	PRRC2A	HGNC	ENSG00000204469				162	0	0	159	61	27.7273
LSM2	0	genome.wustl.edu	37	6	31765402	31765402	+	RNA	DEL	A	A	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	6	31765402	31765402	A	-	DEL	LSM2	ENST00000470083	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	LSM2	HGNC	ENSG00000204392				39	0	0	27	21	43.75
TAP2	0	genome.wustl.edu	37	6	32800077	32800077	+	RNA	DEL	A	A	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	6	32800077	32800077	A	-	DEL	TAP2	ENST00000485701	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	TAP2	HGNC	ENSG00000204267				25	0	0	36	5	12.1951
RXRB	0	genome.wustl.edu	37	6	33166143	33166144	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	6	33166143	33166144	-	G	INS	RXRB	ENST00000374680	human	ensembl	74_37	-1	known	frame_shift_ins	c.582_581	p.P195fs	1.000:1.000	NULL	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Retinoid-X_rcpt/HNF4,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,prints_Retinoic_acid_rcpt	-	no_errors	RXRB	HGNC	ENSG00000204231				256	0	0	245	61	19.9346
KIF6	0	genome.wustl.edu	37	6	39580993	39580993	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	6	39580993	39580993	A	-	DEL	KIF6	ENST00000287152	human	ensembl	74_37	-1	known	frame_shift_del	c.611	p.L204fs	1.000	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF6	HGNC	ENSG00000164627				80	0	0	86	19	18.0952
FOXP4	0	genome.wustl.edu	37	6	41555186	41555186	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	6	41555186	41555186	C	-	DEL	FOXP4	ENST00000307972	human	ensembl	74_37	+1	known	frame_shift_del	c.808	p.L272fs	1.000	NULL	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXP4	HGNC	ENSG00000137166				151	1	0.657895	145	19	11.5854
KLC4	0	genome.wustl.edu	37	6	43028031	43028032	+	Frame_Shift_Ins	INS	-	-	TC			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	6	43028031	43028032	-	TC	INS	KLC4	ENST00000481499	human	ensembl	74_37	+1	known	frame_shift_ins	c.84_85	p.L32fs	0.000:0.000	NULL	NULL	-	no_errors	KLC4	HGNC	ENSG00000137171				90	0	0	72	32	30.7692
ZNF318	0	genome.wustl.edu	37	6	43275190	43275190	+	RNA	DEL	A	A	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	6	43275190	43275190	A	-	DEL	ZNF318	ENST00000607252	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ZNF318	HGNC	ENSG00000171467				24	0	0	13	12	48
SUPT3H	0	genome.wustl.edu	37	6	45289580	45289580	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	6	45289580	45289580	A	-	DEL	SUPT3H	ENST00000371460	human	ensembl	74_37	-1	known	frame_shift_del	c.87	p.Y31fs	0.000	NULL	pfam_TFIID-18,superfamily_Histone-fold	-	no_errors	SUPT3H	HGNC	ENSG00000196284				19	0	0	16	3	15.7895
DST	0	genome.wustl.edu	37	6	56434717	56434717	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	6	56434717	56434717	T	-	DEL	DST	ENST00000370754	human	ensembl	74_37	-1	known	frame_shift_del	c.13722	p.V4575fs	0.005	superfamily_ABC1_TM_dom	pfam_Spectrin_repeat,pfam_Plectin_repeat,pfam_CH-domain,pfam_GAS2_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_GAS2_dom,superfamily_ABC1_TM_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,smart_EF_hand_dom,smart_GAS2_dom,pfscan_CH-domain,pfscan_EF_hand_dom	-	no_errors	DST	HGNC	ENSG00000151914				111	0	0	105	40	27.5862
COL12A1	0	genome.wustl.edu	37	6	75840613	75840614	+	Frame_Shift_Del	DEL	AC	AC	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	AC	AC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	6	75840613	75840614	AC	-	DEL	COL12A1	ENST00000322507	human	ensembl	74_37	-1	known	frame_shift_del	c.6022_6021	p.Y2008fs	1.000:0.892	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_VWF_A,pfam_Collagen,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_VWF_A,smart_Laminin_G,pfscan_Fibronectin_type3,pfscan_VWF_A	-	no_errors	COL12A1	HGNC	ENSG00000111799				78	0	0	75	28	27.1845
HTR1B	0	genome.wustl.edu	37	6	78172873	78172873	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	6	78172873	78172873	G	-	DEL	HTR1B	ENST00000369947	human	ensembl	74_37	-1	known	frame_shift_del	c.248	p.P83fs	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_5HT1B_rcpt,prints_5HT_rcpt,prints_ADR_fam	-	no_errors	HTR1B	HGNC	ENSG00000135312				271	0	0	201	97	32.5503
TTK	0	genome.wustl.edu	37	6	80751897	80751897	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	6	80751897	80751897	A	-	DEL	TTK	ENST00000369798	human	ensembl	74_37	+1	known	frame_shift_del	c.2552	p.R854fs	0.102	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	TTK	HGNC	ENSG00000112742				76	0	0	67	17	20.2381
ZNF292	0	genome.wustl.edu	37	6	87965854	87965854	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	6	87965854	87965854	A	-	DEL	ZNF292	ENST00000369577	human	ensembl	74_37	+1	known	frame_shift_del	c.2507	p.V838fs	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF292	HGNC	ENSG00000188994				44	0	0	43	14	24.5614
ORC3	0	genome.wustl.edu	37	6	88331140	88331142	+	In_Frame_Del	DEL	AAG	AAG	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	AAG	AAG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	6	88331140	88331142	AAG	-	DEL	ORC3	ENST00000257789	human	ensembl	74_37	+1	known	in_frame_del	c.1056_1058	p.R354in_frame_del	0.997:1.000:1.000	NULL	pfam_ORC3	-	no_errors	ORC3	HGNC	ENSG00000135336				144	0	0	137	16	10.4575
MDN1	0	genome.wustl.edu	37	6	90366426	90366426	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	6	90366426	90366426	T	-	DEL	MDN1	ENST00000369393	human	ensembl	74_37	-1	known	frame_shift_del	c.15278	p.N5093fs	1.000	pirsf_Midasin	pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA-3,superfamily_P-loop_NTPase,superfamily_ARM-type_fold,smart_AAA+_ATPase,smart_VWF_A,pirsf_Midasin,pfscan_VWF_A	-	no_errors	MDN1	HGNC	ENSG00000112159				411	0	0	475	115	19.4915
MDN1	0	genome.wustl.edu	37	6	90432675	90432675	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	6	90432675	90432675	T	-	DEL	MDN1	ENST00000369393	human	ensembl	74_37	-1	known	frame_shift_del	c.5966	p.K1989fs	1.000	superfamily_P-loop_NTPase,pirsf_Midasin	pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA-3,superfamily_P-loop_NTPase,superfamily_ARM-type_fold,smart_AAA+_ATPase,smart_VWF_A,pirsf_Midasin,pfscan_VWF_A	-	no_errors	MDN1	HGNC	ENSG00000112159				297	0	0	354	63	15.1079
MAP3K7	0	genome.wustl.edu	37	6	91226170	91226170	+	RNA	DEL	A	A	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	6	91226170	91226170	A	-	DEL	MAP3K7	ENST00000479630	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.947	-	-	-	no_errors	MAP3K7	HGNC	ENSG00000135341				76	0	0	60	39	39.3939
POU3F2	0	genome.wustl.edu	37	6	99284028	99284028	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	6	99284028	99284028	G	-	DEL	POU3F2	ENST00000328345	human	ensembl	74_37	+1	known	frame_shift_del	c.1279	p.S429fs	1.000	pirsf_Transcription_factor_POU	pirsf_Transcription_factor_POU,pfam_POU_specific,pfam_Homeobox_dom,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,smart_POU_specific,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_POU_specific,prints_POU	-	no_errors	POU3F2	HGNC	ENSG00000184486				124	0	0	89	12	11.8812
MEPCE	0	genome.wustl.edu	37	7	100028067	100028068	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	7	100028067	100028068	-	G	INS	MEPCE	ENST00000310512	human	ensembl	74_37	+1	known	frame_shift_ins	c.426_427	p.G145fs	0.466:0.496	NULL	pfam_Bin3	-	no_errors	MEPCE	HGNC	ENSG00000146834				23	0	0	33	8	19.5122
CUX1	0	genome.wustl.edu	37	7	101838799	101838799	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	7	101838799	101838799	C	-	DEL	CUX1	ENST00000360264	human	ensembl	74_37	+1	known	frame_shift_del	c.1171	p.L392fs	1.000	NULL	pfam_Hmoeo_CUT,pfam_Homeobox_dom,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,superfamily_LemA-like_dom,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Hmoeo_CUT	-	no_errors	CUX1	HGNC	ENSG00000257923				36	0	0	35	5	12.5
KMT2E	0	genome.wustl.edu	37	7	104715218	104715218	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	7	104715218	104715218	A	-	DEL	KMT2E	ENST00000257745	human	ensembl	74_37	+1	known	frame_shift_del	c.685	p.S231fs	1.000	NULL	pfam_SET_dom,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_SET_dom,pfscan_SET_dom,pfscan_Znf_PHD-finger	-	no_errors	KMT2E	HGNC	ENSG00000005483				119	1	0.833333	141	20	12.4224
PUS7	0	genome.wustl.edu	37	7	105148864	105148864	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	7	105148864	105148864	T	-	DEL	PUS7	ENST00000356362	human	ensembl	74_37	-1	known	frame_shift_del	c.96	p.K32fs	0.986	pirsf_PsdUridine_synth_TruD_euk	pfam_PsdUridine_synth_TruD,superfamily_PsdUridine_synth_cat_dom,pirsf_PsdUridine_synth_TruD_euk,pfscan_PsdUridine_synth_TruD_insert,tigrfam_PsdUridine_synth_TruD	-	no_errors	PUS7	HGNC	ENSG00000091127				214	0	0	225	42	15.7303
EFCAB10	0	genome.wustl.edu	37	7	105205714	105205714	+	RNA	DEL	T	T	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	7	105205714	105205714	T	-	DEL	EFCAB10	ENST00000469099	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	EFCAB10	HGNC	ENSG00000185055				53	0	0	50	11	18.0328
LAMB4	0	genome.wustl.edu	37	7	107692600	107692603	+	Frame_Shift_Del	DEL	AAGT	AAGT	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	AAGT	AAGT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	7	107692600	107692603	AAGT	-	DEL	LAMB4	ENST00000205386	human	ensembl	74_37	-1	known	frame_shift_del	c.3858_3855	p.L1286fs	0.229:0.182:0.011:0.003	NULL	pfam_EGF_laminin,pfam_Laminin_N,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,pfscan_Laminin_IV,pfscan_EGF_laminin,pfscan_Laminin_N	-	no_errors	LAMB4	HGNC	ENSG00000091128				211	0	0	255	38	12.9693
IFRD1	0	genome.wustl.edu	37	7	112108038	112108039	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	7	112108038	112108039	-	T	INS	IFRD1	ENST00000005558	human	ensembl	74_37	+1	known	frame_shift_ins	c.909_910	p.Y305fs	1.000:1.000	pfam_Interferon-rel_develop_reg_N,superfamily_ARM-type_fold	pfam_Interferon-rel_develop_reg_N,pfam_Interferon-rel_develop_reg_C,superfamily_ARM-type_fold	-	no_errors	IFRD1	HGNC	ENSG00000006652				81	0	0	96	35	26.7176
WNT16	0	genome.wustl.edu	37	7	120971879	120971879	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	7	120971879	120971879	G	-	DEL	WNT16	ENST00000222462	human	ensembl	74_37	+1	known	frame_shift_del	c.494	p.G167fs	1.000	pfam_Wnt,smart_Wnt,prints_Wnt	pfam_Wnt,smart_Wnt,prints_Wnt16,prints_Wnt	-	no_errors	WNT16	HGNC	ENSG00000002745				103	0	0	84	24	22.2222
PAX4	0	genome.wustl.edu	37	7	127255557	127255557	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	7	127255557	127255557	C	-	DEL	PAX4	ENST00000341640	human	ensembl	74_37	-1	known	frame_shift_del	c.18	p.L7fs	0.006	pfam_Paired_dom,superfamily_Homeodomain-like,smart_Paired_dom,pfscan_Paired_dom,prints_Paired_dom	pfam_Paired_dom,pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Paired_dom,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Paired_dom,prints_Paired_dom	-	no_errors	PAX4	HGNC	ENSG00000106331				151	0	0	151	14	8.48485
WDR91	0	genome.wustl.edu	37	7	134871807	134871808	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	7	134871807	134871808	-	T	INS	WDR91	ENST00000354475	human	ensembl	74_37	-1	known	frame_shift_ins	c.1996_1995	p.V665fs	0.974:0.970	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR91	HGNC	ENSG00000105875				204	0	0	223	51	18.6131
HIPK2	0	genome.wustl.edu	37	7	139416737	139416737	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	7	139416737	139416737	T	-	DEL	HIPK2	ENST00000406875	human	ensembl	74_37	-1	known	frame_shift_del	c.97	p.I33fs	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	HIPK2	HGNC	ENSG00000064393				39	0	0	52	5	8.77193
ETV1	0	genome.wustl.edu	37	7	13975473	13975473	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	7	13975473	13975473	G	-	DEL	ETV1	ENST00000405218	human	ensembl	74_37	-1	known	frame_shift_del	c.414	p.T139fs	0.466	pfam_ETS_PEA3_N	pfam_ETS_PEA3_N,pfam_Ets_dom,smart_Ets_dom,pfscan_Ets_dom,prints_Ets_dom	-	no_errors	ETV1	HGNC	ENSG00000006468				154	0	0	172	29	14.4279
BRAF	0	genome.wustl.edu	37	7	140482927	140482927	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	7	140482927	140482927	G	-	DEL	BRAF	ENST00000288602	human	ensembl	74_37	-1	known	frame_shift_del	c.1208	p.P403fs	1.000	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Raf-like_ras-bd,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_Kinase-like_dom,smart_Raf-like_ras-bd,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Raf-like_ras-bd,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_DAG/PE-bd	-	no_errors	BRAF	HGNC	ENSG00000157764				96	0	0	90	12	11.7647
ENSG00000244701	0	genome.wustl.edu	37	7	141352440	141352440	+	RNA	DEL	T	T	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	7	141352440	141352440	T	-	DEL	ENSG00000244701	ENST00000467537	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RP5-894A10.2	Clone_based_vega_gene	ENSG00000244701				18	0	0	22	10	31.25
FAM131B	0	genome.wustl.edu	37	7	143053878	143053878	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	7	143053878	143053878	C	-	DEL	FAM131B	ENST00000443739	human	ensembl	74_37	-1	known	frame_shift_del	c.848	p.G283fs	0.010	NULL	NULL	-	no_errors	FAM131B	HGNC	ENSG00000159784				219	0	0	246	41	14.2857
XRCC2	0	genome.wustl.edu	37	7	152345760	152345760	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	7	152345760	152345760	A	-	DEL	XRCC2	ENST00000359321	human	ensembl	74_37	-1	known	frame_shift_del	c.810	p.F270fs	1.000	superfamily_P-loop_NTPase	pfam_DNA_recomb/repair_Rad51_C,superfamily_P-loop_NTPase,pfscan_DNA_recomb_RecA/RadB_ATP-bd	-	no_errors	XRCC2	HGNC	ENSG00000196584				67	0	0	97	13	11.8182
NOM1	0	genome.wustl.edu	37	7	156742954	156742955	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	7	156742954	156742955	-	T	INS	NOM1	ENST00000275820	human	ensembl	74_37	+1	known	frame_shift_ins	c.523_524	p.L176fs	0.998:1.000	NULL	pfam_Initiation_fac_eIF4g_MI,pfam_MIF4G-like_typ-3,superfamily_ARM-type_fold,smart_MIF4G-like_typ-3,smart_Initiation_fac_eIF4g_MI	-	no_errors	NOM1	HGNC	ENSG00000146909				120	0	0	135	37	21.5116
NOM1	0	genome.wustl.edu	37	7	156761818	156761818	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	7	156761818	156761818	G	-	DEL	NOM1	ENST00000275820	human	ensembl	74_37	+1	known	frame_shift_del	c.2336	p.R779fs	0.972	NULL	pfam_Initiation_fac_eIF4g_MI,pfam_MIF4G-like_typ-3,superfamily_ARM-type_fold,smart_MIF4G-like_typ-3,smart_Initiation_fac_eIF4g_MI	-	no_errors	NOM1	HGNC	ENSG00000146909				157	0	0	159	15	8.62069
WDR60	0	genome.wustl.edu	37	7	158695164	158695164	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	7	158695164	158695164	A	-	DEL	WDR60	ENST00000407559	human	ensembl	74_37	+1	known	frame_shift_del	c.1235	p.K414fs	0.006	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat	-	no_errors	WDR60	HGNC	ENSG00000126870				86	0	0	94	26	21.6667
WDR60	0	genome.wustl.edu	37	7	158704353	158704353	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	7	158704353	158704353	A	-	DEL	WDR60	ENST00000407559	human	ensembl	74_37	+1	known	frame_shift_del	c.1573	p.N527fs	0.958	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat	-	no_errors	WDR60	HGNC	ENSG00000126870				140	1	0.70922	138	29	17.3653
DNAH11	0	genome.wustl.edu	37	7	21894039	21894039	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	7	21894039	21894039	A	-	DEL	DNAH11	ENST00000328843	human	ensembl	74_37	+1	known	frame_shift_del	c.11189	p.I3732fs	0.999	NULL	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH11	HGNC	ENSG00000105877				69	0	0	73	14	16.092
RAPGEF5	0	genome.wustl.edu	37	7	22197474	22197474	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	7	22197474	22197474	T	-	DEL	RAPGEF5	ENST00000344041	human	ensembl	74_37	-1	known	frame_shift_del	c.1097	p.K366fs	1.000	superfamily_Ras_GEF_dom	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,superfamily_Ras_GEF_dom,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RAPGEF5	HGNC	ENSG00000136237				59	0	0	62	19	23.4568
MPP6	0	genome.wustl.edu	37	7	24705666	24705666	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	7	24705666	24705666	A	-	DEL	MPP6	ENST00000222644	human	ensembl	74_37	+1	known	frame_shift_del	c.910	p.K306fs	1.000	superfamily_SH3_domain	pfam_GK/Ca_channel_bsu,pfam_L27_C,pfam_SH3_2,pfam_PDZ,pfam_SH3_domain,superfamily_P-loop_NTPase,superfamily_SH3_domain,superfamily_PDZ,smart_L27,smart_PDZ,smart_SH3_domain,smart_GK/Ca_channel_bsu,pfscan_L27,pfscan_PDZ,pfscan_SH3_domain,pfscan_Guanylate_kin-like	-	no_errors	MPP6	HGNC	ENSG00000105926				170	0	0	187	31	14.2202
CARD11	0	genome.wustl.edu	37	7	2968323	2968323	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	7	2968323	2968323	G	-	DEL	CARD11	ENST00000396946	human	ensembl	74_37	-1	known	frame_shift_del	c.1663	p.R555fs	0.080	NULL	pfam_CARD,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,superfamily_PDZ,pfscan_CARD	-	no_errors	CARD11	HGNC	ENSG00000198286				111	0	0	83	6	6.74157
OGDH	0	genome.wustl.edu	37	7	44715743	44715743	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	7	44715743	44715743	A	-	DEL	OGDH	ENST00000222673	human	ensembl	74_37	+1	known	frame_shift_del	c.1201	p.K402fs	1.000	pfam_DH_E1,pirsf_2oxoglutarate_DH_E1,tigrfam_2oxoglutarate_DH_E1	pfam_DH_E1,pfam_Transketolase-like_Pyr-bd,smart_Transketolase-like_Pyr-bd,pirsf_2oxoglutarate_DH_E1,tigrfam_2oxoglutarate_DH_E1	-	no_errors	OGDH	HGNC	ENSG00000105953				100	0	0	130	18	12.1622
TNS3	0	genome.wustl.edu	37	7	47409129	47409129	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	7	47409129	47409129	G	-	DEL	TNS3	ENST00000311160	human	ensembl	74_37	-1	known	frame_shift_del	c.1114	p.Q372fs	0.032	NULL	pfam_PTB,pfam_Tensin_phosphatase_C2-dom,pfam_SH2,superfamily_C2_dom,smart_Tyr_Pase_cat,smart_SH2,smart_PTB/PI_dom,pfscan_SH2,pfscan_Tyr/Dual-sp_Pase,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	TNS3	HGNC	ENSG00000136205				48	0	0	59	4	6.34921
LANCL2	0	genome.wustl.edu	37	7	55492954	55492956	+	In_Frame_Del	DEL	AGG	AGG	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	AGG	AGG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	7	55492954	55492956	AGG	-	DEL	LANCL2	ENST00000254770	human	ensembl	74_37	+1	known	in_frame_del	c.1016_1018	p.E341in_frame_del	1.000:1.000:1.000	pfam_LANC-like,superfamily_6-hairpin_glycosidase-like,prints_LanC-like_prot_euk	pfam_LANC-like,superfamily_6-hairpin_glycosidase-like,prints_LanC-like_prot_euk,prints_LANC-like	-	no_errors	LANCL2	HGNC	ENSG00000132434				106	0	0	92	18	16.3636
EIF2AK1	0	genome.wustl.edu	37	7	6085740	6085740	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	7	6085740	6085740	T	-	DEL	EIF2AK1	ENST00000199389	human	ensembl	74_37	-1	known	frame_shift_del	c.592	p.I198fs	1.000	pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	EIF2AK1	HGNC	ENSG00000086232				44	0	0	37	6	13.9535
ZNF138	0	genome.wustl.edu	37	7	64291954	64291954	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	7	64291954	64291954	A	-	DEL	ZNF138	ENST00000359735	human	ensembl	74_37	+1	known	frame_shift_del	c.163	p.S56fs	0.032	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF138	HGNC	ENSG00000197008				106	0	0	121	22	15.3846
ZNF92	0	genome.wustl.edu	37	7	64863267	64863267	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	7	64863267	64863267	T	-	DEL	ZNF92	ENST00000328747	human	ensembl	74_37	+1	known	frame_shift_del	c.240	p.F81fs	0.005	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF92	HGNC	ENSG00000146757				53	0	0	50	20	28.5714
STYXL1	0	genome.wustl.edu	37	7	75625886	75625886	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	7	75625886	75625886	T	-	DEL	STYXL1	ENST00000248600	human	ensembl	74_37	-1	known	frame_shift_del	c.842	p.N281fs	0.716	pfam_Dual-sp_phosphatase_cat-dom,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Dual-sp_phosphatase_subgr_cat	pfam_Dual-sp_phosphatase_cat-dom,pfam_Rhodanese-like_dom,superfamily_Rhodanese-like_dom,smart_Rhodanese-like_dom,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Dual-sp_phosphatase_subgr_cat	-	no_errors	STYXL1	HGNC	ENSG00000127952				113	0	0	108	17	13.6
CROT	0	genome.wustl.edu	37	7	86991046	86991046	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	7	86991046	86991046	A	-	DEL	CROT	ENST00000331536	human	ensembl	74_37	+1	known	frame_shift_del	c.425	p.V144fs	1.000	pfam_Carn_acyl_trans	pfam_Carn_acyl_trans	-	no_errors	CROT	HGNC	ENSG00000005469				143	0	0	166	42	20.1923
STEAP2	0	genome.wustl.edu	37	7	89856465	89856465	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	7	89856465	89856465	T	-	DEL	STEAP2	ENST00000287908	human	ensembl	74_37	+1	known	frame_shift_del	c.673	p.F227fs	0.987	NULL	pfam_Fe3_Rdtase_TM_dom	-	no_errors	STEAP2	HGNC	ENSG00000157214				116	1	0.854701	122	23	15.8621
GTPBP10	0	genome.wustl.edu	37	7	90014223	90014224	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	7	90014223	90014224	-	A	INS	GTPBP10	ENST00000222511	human	ensembl	74_37	+1	known	frame_shift_ins	c.919_920	p.N309fs	0.463:0.033	pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,pirsf_GTP-bd_Obg/CgtA	pfam_GTP_binding_domain,pfam_GTP1_OBG_dom,pfam_Fe2_transport_prot_B_N,pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,superfamily_GTP1_OBG_dom,pirsf_GTP-bd_Obg/CgtA,prints_GTP_binding_domain	-	no_errors	GTPBP10	HGNC	ENSG00000105793				83	0	0	78	14	15.2174
CDK14	0	genome.wustl.edu	37	7	90708770	90708770	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	7	90708770	90708770	A	-	DEL	CDK14	ENST00000380050	human	ensembl	74_37	+1	known	frame_shift_del	c.1129	p.N378fs	1.000	pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	CDK14	HGNC	ENSG00000058091				76	0	0	81	15	15.625
AKAP9	0	genome.wustl.edu	37	7	91732039	91732039	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	7	91732039	91732039	G	-	DEL	AKAP9	ENST00000359028	human	ensembl	74_37	+1	known	frame_shift_del	c.11241	p.Q3750fs	1.000	pfam_PACT_domain	pfam_PACT_domain,superfamily_Prefoldin,superfamily_YbaB	-	no_errors	AKAP9	HGNC	ENSG00000127914				382	0	0	377	52	12.1212
ANKIB1	0	genome.wustl.edu	37	7	91936914	91936914	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	7	91936914	91936914	A	-	DEL	ANKIB1	ENST00000265742	human	ensembl	74_37	+1	known	frame_shift_del	c.430	p.N146fs	1.000	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Znf_C6HC,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Znf_RING,smart_Znf_C6HC,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Ubiquitin-int_motif,pfscan_Znf_RING	-	no_errors	ANKIB1	HGNC	ENSG00000001629				64	0	0	40	10	20
HEPACAM2	0	genome.wustl.edu	37	7	92826814	92826814	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	7	92826814	92826814	T	-	DEL	HEPACAM2	ENST00000394468	human	ensembl	74_37	-1	known	frame_shift_del	c.1122	p.K374fs	1.000	NULL	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	HEPACAM2	HGNC	ENSG00000188175				72	0	0	93	16	14.6789
OR2AE1	0	genome.wustl.edu	37	7	99474202	99474203	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	7	99474202	99474203	-	C	INS	OR2AE1	ENST00000316368	human	ensembl	74_37	-1	known	frame_shift_ins	c.455_454	p.A152fs	0.002:0.003	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2AE1	HGNC	ENSG00000244623				170	0	0	138	17	10.9677
AZGP1P1	0	genome.wustl.edu	37	7	99581179	99581179	+	RNA	DEL	C	C	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	7	99581179	99581179	C	-	DEL	AZGP1P1	ENST00000425474	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	AZGP1P1	HGNC	ENSG00000214313				11	0	0	10	2	16.6667
POLR2K	0	genome.wustl.edu	37	8	101164033	101164033	+	RNA	DEL	T	T	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	8	101164033	101164033	T	-	DEL	POLR2K	ENST00000519765	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.004	-	-	-	no_errors	POLR2K	HGNC	ENSG00000147669				32	0	0	28	12	30
RIMS2	0	genome.wustl.edu	37	8	104922623	104922624	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	8	104922623	104922624	-	A	INS	RIMS2	ENST00000262231	human	ensembl	74_37	+1	known	frame_shift_ins	c.1123_1124	p.E377fs	1.000:1.000	NULL	pfam_C2_dom,pfam_PDZ,superfamily_C2_dom,superfamily_PDZ,smart_PDZ,smart_C2_dom,pfscan_C2_dom,pfscan_PDZ	-	no_errors	RIMS2	HGNC	ENSG00000176406				144	0	0	177	25	12.3762
MTMR9	0	genome.wustl.edu	37	8	11162509	11162509	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	8	11162509	11162509	A	-	DEL	MTMR9	ENST00000221086	human	ensembl	74_37	+1	known	frame_shift_del	c.577	p.N195fs	0.997	pfam_Myotubularin-like_Pase_dom	pfam_Myotubularin-like_Pase_dom	-	no_errors	MTMR9	HGNC	ENSG00000104643				84	0	0	94	16	14.5455
NSMCE2	0	genome.wustl.edu	37	8	126369982	126369985	+	Frame_Shift_Del	DEL	AAGT	AAGT	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	AAGT	AAGT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	8	126369982	126369985	AAGT	-	DEL	NSMCE2	ENST00000287437	human	ensembl	74_37	+1	known	frame_shift_del	c.548_551	p.K183fs	1.000:1.000:1.000:1.000	pfscan_Znf_MIZ	pfscan_Znf_MIZ	-	no_errors	NSMCE2	HGNC	ENSG00000156831				102	0	0	119	21	15
PHF20L1	0	genome.wustl.edu	37	8	133826909	133826909	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	8	133826909	133826909	A	-	DEL	PHF20L1	ENST00000395386	human	ensembl	74_37	+1	putative	frame_shift_del	c.958	p.N322fs	1.000	NULL	pfam_DUF3776,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Tudor,smart_Tudor-like_plant	-	no_errors	PHF20L1	HGNC	ENSG00000129292				151	0	0	123	37	23.125
COL22A1	0	genome.wustl.edu	37	8	139601386	139601386	+	RNA	DEL	A	A	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	8	139601386	139601386	A	-	DEL	COL22A1	ENST00000341807	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	COL22A1	HGNC	ENSG00000169436				8	0	0	10	5	33.3333
PTK2	0	genome.wustl.edu	37	8	141754889	141754890	+	RNA	DEL	AA	AA	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	8	141754889	141754890	AA	-	DEL	PTK2	ENST00000518509	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.003:0.004	-	-	-	no_errors	PTK2	HGNC	ENSG00000169398				36	0	0	22	8	26.6667
MAPK15	0	genome.wustl.edu	37	8	144803823	144803823	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	8	144803823	144803823	C	-	DEL	MAPK15	ENST00000338033	human	ensembl	74_37	+1	known	frame_shift_del	c.1309	p.L439fs	0.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	MAPK15	HGNC	ENSG00000181085				157	0	0	161	36	18.2741
SCRIB	0	genome.wustl.edu	37	8	144890899	144890900	+	In_Frame_Ins	INS	-	-	TCC			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	8	144890899	144890900	-	TCC	INS	SCRIB	ENST00000320476	human	ensembl	74_37	-1	known	in_frame_ins	c.1995_1994	p.667in_frame_insE	0.882:0.923	NULL	pfam_PDZ,pfam_Leu-rich_rpt,superfamily_PDZ,smart_Leu-rich_rpt_typical-subtyp,smart_PDZ,pfscan_PDZ	-	no_errors	SCRIB	HGNC	ENSG00000180900				74	0	0	71	8	10.1266
PLEC	0	genome.wustl.edu	37	8	144993119	144993120	+	In_Frame_Ins	INS	-	-	GAT			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	8	144993119	144993120	-	GAT	INS	PLEC	ENST00000322810	human	ensembl	74_37	-1	known	in_frame_ins	c.11281_11280	p.3760in_frame_insI	1.000:0.903	NULL	pfam_Plectin_repeat,pfam_CH-domain,pfam_S10_plectin_N,superfamily_CH-domain,superfamily_Chorismate_mutase_type_II,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,pfscan_CH-domain	-	no_errors	PLEC	HGNC	ENSG00000178209				120	0	0	132	28	17.5
SPATC1	0	genome.wustl.edu	37	8	145095784	145095784	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	8	145095784	145095784	C	-	DEL	SPATC1	ENST00000377470	human	ensembl	74_37	+1	known	frame_shift_del	c.1082	p.H363fs	0.001	NULL	NULL	-	no_errors	SPATC1	HGNC	ENSG00000186583				56	0	0	49	14	22.2222
ZNF251	0	genome.wustl.edu	37	8	145947031	145947031	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	8	145947031	145947031	A	-	DEL	ZNF251	ENST00000292562	human	ensembl	74_37	-1	known	frame_shift_del	c.2014	p.*672fs	0.603	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF251	HGNC	ENSG00000198169				27	0	0	45	10	18.1818
MTUS1	0	genome.wustl.edu	37	8	17504627	17504628	+	RNA	DEL	AA	AA	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	8	17504627	17504628	AA	-	DEL	MTUS1	ENST00000518889	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	MTUS1	HGNC	ENSG00000129422				56	0	0	74	19	20.4301
DMTN	0	genome.wustl.edu	37	8	21926552	21926552	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	8	21926552	21926552	C	-	DEL	DMTN	ENST00000265800	human	ensembl	74_37	+1	known	frame_shift_del	c.275	p.P94fs	1.000	NULL	pfam_Villin_headpiece,superfamily_Villin_headpiece,smart_Villin_headpiece,pfscan_Villin_headpiece	-	no_errors	DMTN	HGNC	ENSG00000158856				138	0	0	125	43	25.5952
DMTN	0	genome.wustl.edu	37	8	21926994	21926994	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	8	21926994	21926994	C	-	DEL	DMTN	ENST00000265800	human	ensembl	74_37	+1	known	frame_shift_del	c.359	p.R122fs	0.872	NULL	pfam_Villin_headpiece,superfamily_Villin_headpiece,smart_Villin_headpiece,pfscan_Villin_headpiece	-	no_errors	DMTN	HGNC	ENSG00000158856				47	0	0	72	7	8.86076
ENSG00000253200	0	genome.wustl.edu	37	8	22471510	22471510	+	RNA	DEL	A	A	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	8	22471510	22471510	A	-	DEL	ENSG00000253200	ENST00000521025	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	RP11-582J16.5	Clone_based_vega_gene	ENSG00000253200				16	0	0	11	5	31.25
CCAR2	0	genome.wustl.edu	37	8	22477167	22477169	+	In_Frame_Del	DEL	AGA	AGA	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	AGA	AGA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	8	22477167	22477169	AGA	-	DEL	CCAR2	ENST00000308511	human	ensembl	74_37	+1	known	in_frame_del	c.2744_2746	p.K916in_frame_del	1.000:1.000:1.000	NULL	superfamily_NA-bd_OB-fold	-	no_errors	CCAR2	HGNC	ENSG00000158941				8	0	0	6	3	33.3333
CLU	0	genome.wustl.edu	37	8	27466513	27466514	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	8	27466513	27466514	-	T	INS	CLU	ENST00000560366	human	ensembl	74_37	-1	known	frame_shift_ins	c.344_343	p.T115fs	0.633:0.620	pfam_Clusterin-like,smart_Clusterin_N	pfam_Clusterin-like,smart_Clusterin_N,smart_Clusterin_C	-	no_errors	CLU	HGNC	ENSG00000120885				238	2	0.833333	288	71	19.7772
SCARA5	0	genome.wustl.edu	37	8	27823980	27823980	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	8	27823980	27823980	C	-	DEL	SCARA5	ENST00000354914	human	ensembl	74_37	-1	known	frame_shift_del	c.192	p.L65fs	0.857	NULL	pfam_SRCR,pfam_Collagen,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,prints_SRCR,pfscan_SRCR	-	no_errors	SCARA5	HGNC	ENSG00000168079				229	0	0	158	42	21
TUBBP1	0	genome.wustl.edu	37	8	30209504	30209504	+	RNA	DEL	A	A	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	8	30209504	30209504	A	-	DEL	TUBBP1	ENST00000518096	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.026	-	-	-	no_errors	TUBBP1	HGNC	ENSG00000127589				76	0	0	92	14	13.2075
WHSC1L1	0	genome.wustl.edu	37	8	38187221	38187222	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	8	38187221	38187222	-	T	INS	WHSC1L1	ENST00000317025	human	ensembl	74_37	-1	known	frame_shift_ins	c.1256_1255	p.T419fs	0.993:0.976	NULL	pfam_PWWP_dom,pfam_SET_dom,superfamily_Znf_FYVE_PHD,smart_PWWP_dom,smart_Znf_PHD,smart_AWS,smart_SET_dom,smart_Post-SET_dom,pfscan_AWS,pfscan_PWWP_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger	-	no_errors	WHSC1L1	HGNC	ENSG00000147548				213	1	0.46729	235	47	16.6667
RB1CC1	0	genome.wustl.edu	37	8	53568877	53568877	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	8	53568877	53568877	T	-	DEL	RB1CC1	ENST00000025008	human	ensembl	74_37	-1	known	frame_shift_del	c.3512	p.N1171fs	0.002	NULL	pfam_Autophagy-rel_p11	-	no_errors	RB1CC1	HGNC	ENSG00000023287				88	0	0	96	16	14.2857
TRPA1	0	genome.wustl.edu	37	8	72968010	72968011	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	8	72968010	72968011	-	C	INS	TRPA1	ENST00000262209	human	ensembl	74_37	-1	known	frame_shift_ins	c.1275_1274	p.G427fs	0.053:0.178	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_Ion_trans_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	TRPA1	HGNC	ENSG00000104321				77	0	0	116	13	10.0775
TRPA1	0	genome.wustl.edu	37	8	72984094	72984094	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	8	72984094	72984094	A	-	DEL	TRPA1	ENST00000262209	human	ensembl	74_37	-1	known	frame_shift_del	c.120	p.F40fs	0.982	NULL	pfam_Ankyrin_rpt,pfam_Ion_trans_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	TRPA1	HGNC	ENSG00000104321				58	0	0	50	11	18.0328
KCNB2	0	genome.wustl.edu	37	8	73480397	73480397	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	8	73480397	73480397	A	-	DEL	KCNB2	ENST00000523207	human	ensembl	74_37	+1	known	frame_shift_del	c.428	p.E146fs	1.000	prints_K_chnl_volt-dep_Kv2	pfam_K_chnl_volt-dep_Kv2,pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv2.2,prints_K_chnl_volt-dep_Kv2,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv6,prints_K_chnl_volt-dep_Kv3,prints_K_chnl_volt-dep_Kv8	-	no_errors	KCNB2	HGNC	ENSG00000182674				176	0	0	148	73	33.0317
SGK223	0	genome.wustl.edu	37	8	8185359	8185359	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	8	8185359	8185359	T	-	DEL	SGK223	ENST00000330777	human	ensembl	74_37	-1	known	frame_shift_del	c.2933	p.K978fs	0.071	pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_dom	-	no_errors	SGK223	Uniprot_gn	ENSG00000182319				108	0	0	121	14	10.3704
SLC7A13	0	genome.wustl.edu	37	8	87242135	87242135	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	8	87242135	87242135	A	-	DEL	SLC7A13	ENST00000297524	human	ensembl	74_37	-1	known	frame_shift_del	c.372	p.S126fs	0.246	pfam_AA-permease/SLC12A_dom,pirsf_AA/rel_permease1	pfam_AA-permease/SLC12A_dom,pirsf_AA/rel_permease1	-	no_errors	SLC7A13	HGNC	ENSG00000164893				88	0	0	74	13	14.9425
TMEM55A	0	genome.wustl.edu	37	8	92020972	92020972	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	8	92020972	92020972	T	-	DEL	TMEM55A	ENST00000285419	human	ensembl	74_37	-1	known	frame_shift_del	c.538	p.I180fs	1.000	pfam_Transmembrane_protein_55A/B	pfam_Transmembrane_protein_55A/B	-	no_errors	TMEM55A	HGNC	ENSG00000155099				135	0	0	143	32	18.2857
ENSG00000253722	0	genome.wustl.edu	37	8	94745548	94745548	+	RNA	DEL	A	A	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	8	94745548	94745548	A	-	DEL	ENSG00000253722	ENST00000517998	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RP11-10N23.4	Clone_based_vega_gene	ENSG00000253722				24	0	0	10	9	47.3684
TMEM67	0	genome.wustl.edu	37	8	94828723	94828723	+	RNA	DEL	A	A	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	8	94828723	94828723	A	-	DEL	TMEM67	ENST00000463467	human	ensembl	74_37	+1	putative	rna	NULL	NULL	0.614	-	-	-	no_errors	TMEM67	HGNC	ENSG00000164953				23	0	0	26	5	16.129
ESRP1	0	genome.wustl.edu	37	8	95686611	95686611	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	8	95686611	95686611	A	-	DEL	ESRP1	ENST00000433389	human	ensembl	74_37	+1	known	frame_shift_del	c.1528	p.N512fs	1.000	smart_RRM_dom	superfamily_RNaseH-like_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	ESRP1	HGNC	ENSG00000104413				75	0	0	97	20	17.094
CCNE2	0	genome.wustl.edu	37	8	95905168	95905168	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	8	95905168	95905168	C	-	DEL	CCNE2	ENST00000308108	human	ensembl	74_37	-1	known	frame_shift_del	c.195	p.I66fs	0.705	pirsf_Cyclin_A/B/D/E	pfam_Cyclin_N,pfam_Cyclin_C-dom,superfamily_Cyclin-like,smart_Cyclin-like,pirsf_Cyclin_A/B/D/E	-	no_errors	CCNE2	HGNC	ENSG00000175305				111	0	0	108	16	12.9032
SNORA72	0	genome.wustl.edu	37	8	99054837	99054838	+	RNA	DEL	AA	AA	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	8	99054837	99054838	AA	-	DEL	SNORA72	ENST00000501016	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.049:0.047	-	-	-	no_errors	KB-1208A12.3	Clone_based_vega_gene	ENSG00000245970				70	0	0	72	26	26.5306
ERP44	0	genome.wustl.edu	37	9	102780583	102780583	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	9	102780583	102780583	T	-	DEL	ERP44	ENST00000262455	human	ensembl	74_37	-1	known	frame_shift_del	c.600	p.K200fs	1.000	pfam_Calsequestrin,superfamily_Thioredoxin-like_fold	pfam_Thioredoxin_domain,pfam_Calsequestrin,superfamily_Thioredoxin-like_fold	-	no_errors	ERP44	HGNC	ENSG00000023318				91	0	0	91	20	18.018
BAAT	0	genome.wustl.edu	37	9	104130597	104130598	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	9	104130597	104130598	-	C	INS	BAAT	ENST00000259407	human	ensembl	74_37	-1	known	frame_shift_ins	c.474_473	p.L159fs	0.012:0.994	pirsf_Acyl-CoA_thioEstase_long-chain	pfam_BAAT_C,pfam_Thio_Ohase/aa_AcTrfase,pirsf_Acyl-CoA_thioEstase_long-chain	-	no_errors	BAAT	HGNC	ENSG00000136881				29	0	0	33	8	19.5122
C9orf84	0	genome.wustl.edu	37	9	114490015	114490016	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	9	114490015	114490016	-	T	INS	C9orf84	ENST00000318737	human	ensembl	74_37	-1	known	frame_shift_ins	c.1540_1539	p.Q513fs	0.000:0.002	NULL	superfamily_RuvA_2-like	-	no_errors	C9orf84	HGNC	ENSG00000165181				191	0	0	238	50	17.3611
INIP	0	genome.wustl.edu	37	9	115456379	115456380	+	RNA	INS	-	-	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	9	115456379	115456380	-	A	INS	INIP	ENST00000476599	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.029:0.052	-	-	-	no_errors	INIP	HGNC	ENSG00000148153				105	0	0	92	25	21.3675
RAB14	0	genome.wustl.edu	37	9	123954450	123954450	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	9	123954450	123954450	T	-	DEL	RAB14	ENST00000373840	human	ensembl	74_37	-1	known	frame_shift_del	c.105	p.K35fs	1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_EF_GTP-bd_dom,pfam_Gtr1_RagA,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB14	HGNC	ENSG00000119396				118	0	0	143	24	14.3713
GSN	0	genome.wustl.edu	37	9	124074857	124074857	+	RNA	DEL	A	A	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	9	124074857	124074857	A	-	DEL	GSN	ENST00000485767	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	GSN	HGNC	ENSG00000148180				13	0	0	8	4	33.3333
OR1B1	0	genome.wustl.edu	37	9	125391771	125391771	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	9	125391771	125391771	A	-	DEL	OR1B1	ENST00000304833	human	ensembl	74_37	-1	known	frame_shift_del	c.44	p.L15fs	0.028	NULL	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR1B1	HGNC	ENSG00000171484				61	0	0	98	18	15.5172
OR1L3	0	genome.wustl.edu	37	9	125437936	125437936	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	9	125437936	125437936	T	-	DEL	OR1L3	ENST00000304820	human	ensembl	74_37	+1	known	frame_shift_del	c.528	p.C179fs	0.947	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR1L3	HGNC	ENSG00000171481				384	1	0.25974	430	88	16.9884
ENG	0	genome.wustl.edu	37	9	130587555	130587555	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	9	130587555	130587555	G	-	DEL	ENG	ENST00000373203	human	ensembl	74_37	-1	known	frame_shift_del	c.771	p.Y258fs	0.002	NULL	pfam_ZP_dom	-	no_errors	ENG	HGNC	ENSG00000106991				56	0	0	57	9	13.6364
CRAT	0	genome.wustl.edu	37	9	131857690	131857690	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	9	131857690	131857690	G	-	DEL	CRAT	ENST00000318080	human	ensembl	74_37	-1	known	frame_shift_del	c.1867	p.R623fs	0.020	NULL	pfam_Carn_acyl_trans	-	no_errors	CRAT	HGNC	ENSG00000095321				61	0	0	56	11	16.4179
C9orf78	0	genome.wustl.edu	37	9	132596001	132596001	+	RNA	DEL	A	A	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	9	132596001	132596001	A	-	DEL	C9orf78	ENST00000461762	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.115	-	-	-	no_errors	C9orf78	HGNC	ENSG00000136819				23	0	0	21	6	22.2222
POMT1	0	genome.wustl.edu	37	9	134390827	134390827	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	9	134390827	134390827	C	-	DEL	POMT1	ENST00000372228	human	ensembl	74_37	+1	known	frame_shift_del	c.1256	p.L421fs	0.999	pfam_MIR_motif,superfamily_MIR_motif,smart_MIR_motif,pfscan_MIR_motif	pfam_Glyco_trans_39,pfam_MIR_motif,superfamily_MIR_motif,smart_MIR_motif,pfscan_MIR_motif	-	no_errors	POMT1	HGNC	ENSG00000130714				265	0	0	239	44	15.5477
SETX	0	genome.wustl.edu	37	9	135201742	135201742	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	9	135201742	135201742	A	-	DEL	SETX	ENST00000372169	human	ensembl	74_37	-1	known	frame_shift_del	c.5243	p.F1748fs	1.000	NULL	superfamily_P-loop_NTPase	-	no_errors	SETX	HGNC	ENSG00000107290				70	0	0	92	8	8
AK8	0	genome.wustl.edu	37	9	135753607	135753607	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	9	135753607	135753607	G	-	DEL	AK8	ENST00000298545	human	ensembl	74_37	-1	known	frame_shift_del	c.36	p.E13fs	0.965	superfamily_cAMP_dep_PK_reg_su_I/II_a/b	pfam_Adenylate_kin,superfamily_P-loop_NTPase,superfamily_Adenylate_kinase_lid-dom,superfamily_cAMP_dep_PK_reg_su_I/II_a/b,prints_Adenylate_kin	-	no_errors	AK8	HGNC	ENSG00000165695				47	0	0	46	5	9.80392
BRD3	0	genome.wustl.edu	37	9	136918528	136918529	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	9	136918528	136918529	-	G	INS	BRD3	ENST00000303407	human	ensembl	74_37	-1	known	frame_shift_ins	c.72_71	p.E25fs	0.120:1.000	superfamily_Bromodomain	pfam_Bromodomain,superfamily_Bromodomain,smart_Bromodomain,prints_Bromodomain,pfscan_Bromodomain	-	no_errors	BRD3	HGNC	ENSG00000169925				67	0	0	56	4	6.66667
PMPCA	0	genome.wustl.edu	37	9	139305172	139305173	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	9	139305172	139305173	-	G	INS	PMPCA	ENST00000371717	human	ensembl	74_37	+1	known	frame_shift_ins	c.52_53	p.C20fs	0.571:0.773	NULL	pfam_Pept_M16_N,pfam_Peptidase_M16_C,superfamily_Metalloenz_LuxS/M16	-	no_errors	PMPCA	HGNC	ENSG00000165688				24	0	0	28	4	12.5
NOTCH1	0	genome.wustl.edu	37	9	139390736	139390736	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	9	139390736	139390736	G	-	DEL	NOTCH1	ENST00000277541	human	ensembl	74_37	-1	known	frame_shift_del	c.7455	p.S2486fs	1.000	pfam_DUF3454_notch,pirsf_Notch	pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,pfam_Ankyrin_rpt,pfam_EGF_extracell,pfam_Notch_NOD_dom,pfam_DUF3454_notch,pfam_Notch_NODP_dom,superfamily_Ankyrin_rpt-contain_dom,superfamily_Notch_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Notch_dom,smart_Ankyrin_rpt,pirsf_Notch,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_EG-like_dom,pfscan_Notch_dom,prints_Notch_1,prints_Notch_dom	-	no_errors	NOTCH1	HGNC	ENSG00000148400				9	0	0	35	5	12.5
PTGDS	0	genome.wustl.edu	37	9	139874595	139874595	+	RNA	DEL	C	C	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	9	139874595	139874595	C	-	DEL	PTGDS	ENST00000462514	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	PTGDS	HGNC	ENSG00000107317				54	0	0	59	18	23.3766
ENTPD2	0	genome.wustl.edu	37	9	139945517	139945517	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	9	139945517	139945517	C	-	DEL	ENTPD2	ENST00000355097	human	ensembl	74_37	-1	known	frame_shift_del	c.611	p.G204fs	0.999	pfam_GDA1_CD39_NTPase	pfam_GDA1_CD39_NTPase	-	no_errors	ENTPD2	HGNC	ENSG00000054179				137	0	0	177	30	14.4928
DPP7	0	genome.wustl.edu	37	9	140005118	140005118	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	9	140005118	140005118	C	-	DEL	DPP7	ENST00000371579	human	ensembl	74_37	-1	known	frame_shift_del	c.1461	p.R489fs	0.000	NULL	pfam_Peptidase_S28,pfam_AB_hydrolase_1	-	no_errors	DPP7	HGNC	ENSG00000176978				86	0	0	100	10	9.09091
PSIP1	0	genome.wustl.edu	37	9	15472612	15472613	+	RNA	DEL	AA	AA	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	9	15472612	15472613	AA	-	DEL	PSIP1	ENST00000495873	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001:0.000	-	-	-	no_errors	PSIP1	HGNC	ENSG00000164985				103	0	0	113	37	24.6667
CNTLN	0	genome.wustl.edu	37	9	17484353	17484353	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	9	17484353	17484353	A	-	DEL	CNTLN	ENST00000380647	human	ensembl	74_37	+1	known	frame_shift_del	c.3916	p.M1308fs	0.999	NULL	superfamily_Prefoldin	-	no_errors	CNTLN	HGNC	ENSG00000044459				233	0	0	231	42	15.3846
FOCAD	0	genome.wustl.edu	37	9	20912931	20912931	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	9	20912931	20912931	A	-	DEL	FOCAD	ENST00000338382	human	ensembl	74_37	+1	known	frame_shift_del	c.2785	p.S931fs	1.000	superfamily_ARM-type_fold	pfam_DUF3028,pfam_DUF3730,superfamily_ARM-type_fold	-	no_errors	FOCAD	HGNC	ENSG00000188352				53	0	0	51	11	17.7419
PTPLAD2	0	genome.wustl.edu	37	9	21007046	21007046	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	9	21007046	21007046	T	-	DEL	PTPLAD2	ENST00000495827	human	ensembl	74_37	-1	known	frame_shift_del	c.689	p.K230fs	1.000	NULL	pfam_Tyr_Pase-like_PTPLA	-	no_errors	PTPLAD2	HGNC	ENSG00000188921				162	0	0	147	35	19.2308
PTENP1	0	genome.wustl.edu	37	9	33675365	33675365	+	RNA	DEL	A	A	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	9	33675365	33675365	A	-	DEL	PTENP1	ENST00000532280	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.998	-	-	-	no_errors	PTENP1	HGNC	ENSG00000237984				11	0	0	10	6	37.5
KIF24	0	genome.wustl.edu	37	9	34257623	34257623	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	9	34257623	34257623	T	-	DEL	KIF24	ENST00000379166	human	ensembl	74_37	-1	known	frame_shift_del	c.1982	p.K661fs	0.000	NULL	pfam_Kinesin_motor_dom,pfam_SAM_type1,superfamily_P-loop_NTPase,superfamily_SAM/pointed,smart_Kinesin_motor_dom,pfscan_SAM,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF24	HGNC	ENSG00000186638				117	1	0.847458	111	23	17.1642
RLN2	0	genome.wustl.edu	37	9	5304561	5304561	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	9	5304561	5304561	A	-	DEL	RLN2	ENST00000381627	human	ensembl	74_37	-1	known	frame_shift_del	c.20	p.F7fs	0.078	prints_Relaxin	pfam_Insulin-like,superfamily_Insulin-like,smart_Insulin-like,prints_Relaxin,prints_Insulin_family	-	no_errors	RLN2	HGNC	ENSG00000107014				120	0	0	162	18	10
ERMP1	0	genome.wustl.edu	37	9	5801292	5801292	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	9	5801292	5801292	T	-	DEL	ERMP1	ENST00000339450	human	ensembl	74_37	-1	known	frame_shift_del	c.1951	p.T651fs	0.994	NULL	pfam_Peptidase_M28,pfam_Peptidase_M20	-	no_errors	ERMP1	HGNC	ENSG00000099219				98	0	0	92	19	17.1171
RANBP6	0	genome.wustl.edu	37	9	6012690	6012690	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	9	6012690	6012690	T	-	DEL	RANBP6	ENST00000259569	human	ensembl	74_37	-1	known	frame_shift_del	c.2918	p.N973fs	1.000	superfamily_ARM-type_fold	pfam_HEAT,superfamily_ARM-type_fold	-	no_errors	RANBP6	HGNC	ENSG00000137040				116	1	0.854701	111	38	25.5034
ALDH1A1	0	genome.wustl.edu	37	9	75542080	75542080	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	9	75542080	75542080	A	-	DEL	ALDH1A1	ENST00000297785	human	ensembl	74_37	-1	known	frame_shift_del	c.456	p.F152fs	0.782	pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH	pfam_Aldehyde_DH_dom,pfam_Acyl-CoA_reduct_LuxC,superfamily_Ald_DH/histidinol_DH	-	no_errors	ALDH1A1	HGNC	ENSG00000165092				80	0	0	88	21	19.2661
PRUNE2	0	genome.wustl.edu	37	9	79267523	79267525	+	In_Frame_Del	DEL	AGA	AGA	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	AGA	AGA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	9	79267523	79267525	AGA	-	DEL	PRUNE2	ENST00000428286	human	ensembl	74_37	-1	known	in_frame_del	c.7356_7354	p.S2452in_frame_del	1.000:1.000:1.000	pfam_Bcl2-/adenovirus-E1B	pfam_Bcl2-/adenovirus-E1B,pfam_CRAL-TRIO_dom,superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom	-	no_errors	PRUNE2	HGNC	ENSG00000106772				287	0	0	289	48	14.2433
VPS13A	0	genome.wustl.edu	37	9	79875050	79875051	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	9	79875050	79875051	-	A	INS	VPS13A	ENST00000360280	human	ensembl	74_37	+1	known	frame_shift_ins	c.2337_2338	p.L781fs	1.000:0.999	NULL	pfam_VPSAP_dom,pfam_Autophagy-rel_C	-	no_errors	VPS13A	HGNC	ENSG00000197969				46	0	0	39	13	25
PHF2	0	genome.wustl.edu	37	9	96422612	96422612	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	9	96422612	96422612	A	-	DEL	PHF2	ENST00000359246	human	ensembl	74_37	+1	known	frame_shift_del	c.1468	p.K492fs	1.000	NULL	pfam_JmjC_dom,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_JmjC_dom,pfscan_JmjC_dom,pfscan_Znf_PHD-finger	-	no_errors	PHF2	HGNC	ENSG00000197724				16	0	0	14	3	17.6471
BTK	0	genome.wustl.edu	37	X	100608059	100608060	+	RNA	DEL	AA	AA	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	X	100608059	100608060	AA	-	DEL	BTK	ENST00000470069	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.006:0.016	-	-	-	no_errors	BTK	HGNC	ENSG00000010671				53	0	0	32	20	38.4615
BHLHB9	0	genome.wustl.edu	37	X	102003966	102003967	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	X	102003966	102003967	-	A	INS	BHLHB9	ENST00000361229	human	ensembl	74_37	+1	known	frame_shift_ins	c.43_44	p.A18fs	0.000:0.000	NULL	pfam_ARM-rpt_dom,superfamily_ARM-type_fold	-	no_errors	BHLHB9	HGNC	ENSG00000198908				153	0	0	103	30	22.5564
MORC4	0	genome.wustl.edu	37	X	106228467	106228468	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	X	106228467	106228468	-	T	INS	MORC4	ENST00000355610	human	ensembl	74_37	-1	known	frame_shift_ins	c.533_532	p.M178fs	1.000:1.000	superfamily_HATPase_ATP-bd	pfam_Znf_CW,pfam_HATPase_ATP-bd,superfamily_HATPase_ATP-bd,superfamily_Prefoldin,pfscan_Znf_CW	-	no_errors	MORC4	HGNC	ENSG00000133131				233	0	0	144	43	22.9947
BCORL1	0	genome.wustl.edu	37	X	129190011	129190011	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	X	129190011	129190011	C	-	DEL	BCORL1	ENST00000303743	human	ensembl	74_37	+1	known	frame_shift_del	c.5258	p.P1755fs	0.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	BCORL1	HGNC	ENSG00000085185				128	0	0	128	9	6.56934
HTATSF1	0	genome.wustl.edu	37	X	135593401	135593402	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	X	135593401	135593402	-	A	INS	HTATSF1	ENST00000218364	human	ensembl	74_37	+1	known	frame_shift_ins	c.1497_1498	p.E501fs	0.000:0.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	HTATSF1	HGNC	ENSG00000102241				97	0	0	74	39	34.5133
TRAPPC2	0	genome.wustl.edu	37	X	13734126	13734127	+	Frame_Shift_Del	DEL	TA	TA	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	TA	TA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	X	13734126	13734127	TA	-	DEL	TRAPPC2	ENST00000453655	human	ensembl	74_37	-1	known	frame_shift_del	c.342_341	p.I114fs	1.000:1.000	pfam_Sedlin,pfam_Sybindin,superfamily_Longin-like_dom	pfam_Sedlin,pfam_Sybindin,superfamily_Longin-like_dom	-	no_errors	TRAPPC2	HGNC	ENSG00000196459				19	0	0	11	5	31.25
PLXNB3	0	genome.wustl.edu	37	X	153042691	153042691	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	X	153042691	153042691	G	-	DEL	PLXNB3	ENST00000538966	human	ensembl	74_37	+1	known	frame_shift_del	c.5025	p.V1678fs	0.849	pfam_Plexin_cytoplasmic_RasGAP_dom,superfamily_Rho_GTPase_activation_prot	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_IPT,pfam_Plexin_repeat,pfam_Semap_dom,superfamily_Semap_dom,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_IPT,pfscan_Semap_dom	-	no_errors	PLXNB3	HGNC	ENSG00000198753				11	0	0	11	8	42.1053
FLNA	0	genome.wustl.edu	37	X	153590823	153590824	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	X	153590823	153590824	-	C	INS	FLNA	ENST00000369850	human	ensembl	74_37	-1	known	frame_shift_ins	c.2528_2527	p.A843fs	1.000:1.000	pfam_Filamin/ABP280_repeat-like,superfamily_Ig_E-set,smart_Filamin,pfscan_Filamin/ABP280_repeat-like	pfam_Filamin/ABP280_repeat-like,pfam_CH-domain,superfamily_CH-domain,superfamily_Ig_E-set,smart_CH-domain,smart_Filamin,pfscan_CH-domain,pfscan_Filamin/ABP280_repeat-like	-	no_errors	FLNA	HGNC	ENSG00000196924				178	0	0	206	28	11.9658
F8	0	genome.wustl.edu	37	X	154088725	154088725	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	X	154088725	154088725	A	-	DEL	F8	ENST00000360256	human	ensembl	74_37	-1	known	frame_shift_del	c.6882	p.Q2295fs	0.005	pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,smart_Coagulation_fac_5/8-C_type_dom,pfscan_Coagulation_fac_5/8-C_type_dom	pfam_Coagulation_fac_5/8-C_type_dom,pfam_Cu-oxidase_3,pfam_Cu-oxidase_2,superfamily_Galactose-bd-like,superfamily_Cupredoxin,smart_Coagulation_fac_5/8-C_type_dom,pfscan_Coagulation_fac_5/8-C_type_dom	-	no_errors	F8	HGNC	ENSG00000185010				378	0	0	441	77	14.8649
SH3KBP1	0	genome.wustl.edu	37	X	19560215	19560215	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	X	19560215	19560215	G	-	DEL	SH3KBP1	ENST00000397821	human	ensembl	74_37	-1	known	frame_shift_del	c.1720	p.L574fs	0.002	NULL	pfam_SH3_2,pfam_SH3_domain,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain,prints_p67phox,prints_SH3_domain,prints_Spectrin_alpha_SH3	-	no_errors	SH3KBP1	HGNC	ENSG00000147010				115	0	0	94	15	13.7615
PPP2R3B	0	genome.wustl.edu	37	X	302052	302052	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	X	302052	302052	T	-	DEL	PPP2R3B	ENST00000390665	human	ensembl	74_37	-1	known	frame_shift_del	c.1165	p.T389fs	1.000	pfscan_EF_hand_dom	pfscan_EF_hand_dom	-	no_errors	PPP2R3B	HGNC	ENSG00000167393				283	1	0.352113	234	63	21.2121
FAM47C	0	genome.wustl.edu	37	X	37028265	37028265	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	X	37028265	37028265	C	-	DEL	FAM47C	ENST00000358047	human	ensembl	74_37	+1	known	frame_shift_del	c.1782	p.P596fs	0.005	NULL	NULL	-	no_errors	FAM47C	HGNC	ENSG00000198173				152	0	0	165	13	7.30337
PRRG1	0	genome.wustl.edu	37	X	37312611	37312611	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	X	37312611	37312611	C	-	DEL	PRRG1	ENST00000378628	human	ensembl	74_37	+1	known	frame_shift_del	c.394	p.P134fs	0.109	NULL	pfam_GLA_domain,superfamily_GLA_domain,smart_GLA_domain,pfscan_GLA_domain,prints_GLA_domain	-	no_errors	PRRG1	HGNC	ENSG00000130962				258	1	0.3861	151	49	24.5
XK	0	genome.wustl.edu	37	X	37587585	37587585	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	X	37587585	37587585	A	-	DEL	XK	ENST00000378616	human	ensembl	74_37	+1	known	frame_shift_del	c.1205	p.K403fs	0.000	NULL	pfam_Transport_prot_XK	-	no_errors	XK	HGNC	ENSG00000047597				109	0	0	90	8	8.16327
MED14	0	genome.wustl.edu	37	X	40588606	40588608	+	RNA	DEL	AAA	AAA	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	AAA	AAA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	X	40588606	40588608	AAA	-	DEL	MED14	ENST00000463072	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000:0.000:0.610	-	-	-	no_errors	MED14	HGNC	ENSG00000180182				59	0	0	63	25	28.4091
MAOA	0	genome.wustl.edu	37	X	43587520	43587520	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	X	43587520	43587520	G	-	DEL	MAOA	ENST00000338702	human	ensembl	74_37	+1	known	frame_shift_del	c.604	p.G203fs	1.000	pfam_Amino_oxidase,prints_Flavin_amine_oxidase	pfam_Amino_oxidase,pfam_FAD-dep_OxRdtase,pfam_mOase_FAD-bd,pfam_Pyr_OxRdtase_NAD-bd_dom,pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,pfam_FAD_bind_dom,prints_Flavin_amine_oxidase	-	no_errors	MAOA	HGNC	ENSG00000189221				192	0	0	170	38	18.2692
TEX11	0	genome.wustl.edu	37	X	70127618	70127618	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	X	70127618	70127618	A	-	DEL	TEX11	ENST00000374333	human	ensembl	74_37	-1	known	frame_shift_del	c.22	p.S8fs	0.008	NULL	pfam_Meiosis_specific_SPO22,smart_TPR_repeat	-	no_errors	TEX11	HGNC	ENSG00000120498				82	0	0	85	17	16.6667
PNPLA4	0	genome.wustl.edu	37	X	7890141	7890142	+	Splice_Site	INS	-	-	A			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	X	7890141	7890142	-	A	INS	PNPLA4	ENST00000381042	human	ensembl	74_37	-1	known	splice_site_ins	c.181-3_181-2	e2-2	1.000:0.995	-	-	-	no_errors	PNPLA4	HGNC	ENSG00000006757				20	0	0	22	7	24.1379
PCDH19	0	genome.wustl.edu	37	X	99662505	99662505	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4362-01A-01D-1158-08	TCGA-BR-4362-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c824bccc-3bd3-4e33-ad4b-37018dc74b4e	dc77607d-9541-41dd-a2cb-e9416278f52e	X	99662505	99662505	G	-	DEL	PCDH19	ENST00000373034	human	ensembl	74_37	-1	known	frame_shift_del	c.1091	p.P364fs	1.000	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH19	HGNC	ENSG00000165194				144	1	0.689655	85	20	19.0476
