Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
GPR61	0	genome.wustl.edu	37	1	110085827	110085827	+	Silent	SNP	C	C	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	1	110085827	110085827	C	T	SNP	GPR61	ENST00000404129	human	ensembl	74_37	+1	known	silent	c.183	p.A61	0.354	pfam_GPCR_Rhodpsn,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	GPR61	HGNC	ENSG00000156097				136	0	0	105	54	33.9623
SLC16A4	0	genome.wustl.edu	37	1	110921593	110921593	+	Silent	SNP	A	A	G			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	1	110921593	110921593	A	G	SNP	SLC16A4	ENST00000369779	human	ensembl	74_37	-1	known	silent	c.912	p.F304	1.000	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC16A4	HGNC	ENSG00000168679				124	0	0	108	30	21.7391
SRM	0	genome.wustl.edu	37	1	11116784	11116784	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	1	11116784	11116784	G	A	SNP	SRM	ENST00000376957	human	ensembl	74_37	-1	known	missense	c.412	p.P138S	1.000	pfam_Spermidine/spermine_synthase,pfscan_Spermidine/spermine_synthase,tigrfam_Spermidine/spermine_synthase	pfam_Spermidine/spermine_synthase,pfscan_Spermidine/spermine_synthase,tigrfam_Spermidine/spermine_synthase	-	no_errors	SRM	HGNC	ENSG00000116649				89	0	0	53	30	36.1446
HIPK1	0	genome.wustl.edu	37	1	114483597	114483597	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	1	114483597	114483597	C	T	SNP	HIPK1	ENST00000369558	human	ensembl	74_37	+1	known	missense	c.592	p.R198W	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	HIPK1	HGNC	ENSG00000163349				120	0	0	80	23	22.3301
ATP1A1	0	genome.wustl.edu	37	1	116931263	116931263	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	1	116931263	116931263	G	A	SNP	ATP1A1	ENST00000295598	human	ensembl	74_37	+1	known	missense	c.505	p.A169T	1.000	pfam_ATPase_P-typ_transduc_dom_A,tigrfam_ATPase_P-typ_Na/K_IIC,tigrfam_Cation_transp_P_typ_ATPase	pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_cation-transptr_C,pfam_HAD-like_dom,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_P-typ_cyto_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Na/K_IIC,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP1A1	HGNC	ENSG00000163399				141	0	0	112	15	11.811
TTF2	0	genome.wustl.edu	37	1	117632754	117632754	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	1	117632754	117632754	A	G	SNP	TTF2	ENST00000369466	human	ensembl	74_37	+1	known	missense	c.2420	p.E807G	1.000	pfam_SNF2_N,superfamily_P-loop_NTPase	pfam_SNF2_N,pfam_Helicase_C,pfam_Helicase/UvrB_dom,pfam_Znf_GRF,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	TTF2	HGNC	ENSG00000116830				255	1	0.390625	175	78	30.83
ENSG00000203849	0	genome.wustl.edu	37	1	142713604	142713604	+	RNA	SNP	A	A	G			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	1	142713604	142713604	A	G	SNP	ENSG00000203849	ENST00000369381	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.153	-	-	-	no_errors	RP11-417J8.6	Clone_based_vega_gene	ENSG00000203849				57	0	0	36	9	20
PDE4DIP	0	genome.wustl.edu	37	1	144881535	144881535	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	1	144881535	144881535	A	G	SNP	PDE4DIP	ENST00000369356	human	ensembl	74_37	-1	known	missense	c.3661	p.S1221P	1.000	NULL	pfam_Spindle_assoc,superfamily_ARM-type_fold	-	no_errors	PDE4DIP	HGNC	ENSG00000178104				268	0	0	216	54	20
PDE4DIP	0	genome.wustl.edu	37	1	144915576	144915576	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	1	144915576	144915576	A	G	SNP	PDE4DIP	ENST00000369356	human	ensembl	74_37	-1	known	missense	c.1849	p.C617R	1.000	superfamily_ARM-type_fold	pfam_Spindle_assoc,superfamily_ARM-type_fold	-	no_errors	PDE4DIP	HGNC	ENSG00000178104				249	0	0	185	41	18.1416
PI4KB	0	genome.wustl.edu	37	1	151288916	151288916	+	Silent	SNP	A	A	C			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	1	151288916	151288916	A	C	SNP	PI4KB	ENST00000271657	human	ensembl	74_37	-1	known	silent	c.78	p.T26	1.000	NULL	pfam_PI3/4_kinase_cat_dom,superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PI4KB	HGNC	ENSG00000143393				87	0	0	56	17	23.2877
TDRKH	0	genome.wustl.edu	37	1	151747603	151747603	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	1	151747603	151747603	C	T	SNP	TDRKH	ENST00000368822	human	ensembl	74_37	-1	known	missense	c.1474	p.A492T	0.999	NULL	pfam_KH_dom_type_1,pfam_Tudor,smart_KH_dom,smart_Tudor,pfscan_Tudor,pfscan_KH_dom_type_1	-	no_errors	TDRKH	HGNC	ENSG00000182134				150	0	0	104	27	20.6107
S100A8	0	genome.wustl.edu	37	1	153362988	153362988	+	Silent	SNP	G	G	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	1	153362988	153362988	G	T	SNP	S100A8	ENST00000368732	human	ensembl	74_37	-1	known	silent	c.24	p.A8	0.001	pfam_S100_Ca-bd_sub	pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom	-	no_errors	S100A8	HGNC	ENSG00000143546				321	0	0	197	79	28.6232
CHRNB2	0	genome.wustl.edu	37	1	154543725	154543725	+	Silent	SNP	C	C	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	1	154543725	154543725	C	T	SNP	CHRNB2	ENST00000368476	human	ensembl	74_37	+1	known	silent	c.426	p.S142	1.000	pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,prints_Nicotinic_acetylcholine_rcpt,tigrfam_Neur_channel	pfam_Neurotrans-gated_channel_TM,pfam_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,prints_Nicotinic_acetylcholine_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	CHRNB2	HGNC	ENSG00000160716				138	0	0	93	59	38.8158
RUSC1	0	genome.wustl.edu	37	1	155294263	155294263	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	1	155294263	155294263	T	C	SNP	RUSC1	ENST00000368347	human	ensembl	74_37	+1	known	missense	c.55	p.C19R	0.012	NULL	pfam_Run,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_Run,smart_SH3_domain,pfscan_Run,pfscan_SH3_domain	-	no_errors	RUSC1	HGNC	ENSG00000160753				56	0	0	40	15	27.2727
ASH1L	0	genome.wustl.edu	37	1	155450332	155450332	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	1	155450332	155450332	G	A	SNP	ASH1L	ENST00000368346	human	ensembl	74_37	-1	known	missense	c.2329	p.R777C	1.000	NULL	pfam_SET_dom,pfam_BAH_dom,pfam_Bromodomain,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_AT_hook_DNA-bd_motif,smart_AWS,smart_SET_dom,smart_Bromodomain,smart_Znf_PHD,smart_BAH_dom,pfscan_AWS,pfscan_BAH_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Bromodomain	-	no_errors	ASH1L	HGNC	ENSG00000116539				372	0	0	253	109	30.1105
FCRL4	0	genome.wustl.edu	37	1	157550253	157550253	+	RNA	SNP	C	C	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	1	157550253	157550253	C	T	SNP	FCRL4	ENST00000479869	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	FCRL4	HGNC	ENSG00000163518				31	0	0	23	9	28.125
IFI16	0	genome.wustl.edu	37	1	158988127	158988127	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	1	158988127	158988127	A	G	SNP	IFI16	ENST00000295809	human	ensembl	74_37	+1	known	missense	c.658	p.T220A	0.000	pfam_HIN200/IF120x,pfscan_HIN200/IF120x	pfam_HIN200/IF120x,pfam_DAPIN,superfamily_DEATH-like_dom,pfscan_DAPIN,pfscan_HIN200/IF120x	-	no_errors	IFI16	HGNC	ENSG00000163565				100	0	0	58	24	29.2683
CCDC19	0	genome.wustl.edu	37	1	159846359	159846359	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	1	159846359	159846359	C	T	SNP	CCDC19	ENST00000368099	human	ensembl	74_37	-1	known	missense	c.1339	p.E447K	1.000	NULL	NULL	-	no_errors	CCDC19	HGNC	ENSG00000213085				39	0	0	25	8	24.2424
NR1I3	0	genome.wustl.edu	37	1	161201029	161201029	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	1	161201029	161201029	G	T	SNP	NR1I3	ENST00000367979	human	ensembl	74_37	-1	known	missense	c.701	p.P234H	0.016	pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Nucl_hrmn_rcpt_lig-bd_core	pfam_Znf_hrmn_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt	-	no_errors	NR1I3	HGNC	ENSG00000143257				74	0	0	49	22	30.9859
ALDH9A1	0	genome.wustl.edu	37	1	165638534	165638534	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	1	165638534	165638534	G	A	SNP	ALDH9A1	ENST00000354775	human	ensembl	74_37	-1	known	nonsense	c.1084	p.R362*	0.951	pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH	pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH	-	no_errors	ALDH9A1	HGNC	ENSG00000143149				176	0	0	128	48	27.2727
KLHL20	0	genome.wustl.edu	37	1	173720977	173720977	+	Silent	SNP	C	C	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	1	173720977	173720977	C	T	SNP	KLHL20	ENST00000209884	human	ensembl	74_37	+1	known	silent	c.672	p.N224	0.986	pfam_BACK,smart_BACK,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BACK,pfam_BTB_POZ,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL20	HGNC	ENSG00000076321				68	0	0	42	18	30
ASTN1	0	genome.wustl.edu	37	1	176926923	176926923	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	1	176926923	176926923	A	G	SNP	ASTN1	ENST00000367654	human	ensembl	74_37	-1	known	missense	c.1802	p.V601A	0.999	NULL	superfamily_Fibronectin_type3,smart_EG-like_dom,smart_MACPF,pfscan_Fibronectin_type3	-	no_errors	ASTN1	HGNC	ENSG00000152092				49	0	0	32	18	36
RALGPS2	0	genome.wustl.edu	37	1	178854243	178854243	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	1	178854243	178854243	C	T	SNP	RALGPS2	ENST00000367635	human	ensembl	74_37	+1	known	nonsense	c.937	p.R313*	0.970	NULL	pfam_RasGRF_CDC25,superfamily_Ras_GEF_dom,smart_RasGRF_CDC25,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_RasGRF_CDC25	-	no_errors	RALGPS2	HGNC	ENSG00000116191				102	0	0	81	30	27.027
LAMC1	0	genome.wustl.edu	37	1	183111832	183111832	+	Silent	SNP	C	C	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	1	183111832	183111832	C	T	SNP	LAMC1	ENST00000258341	human	ensembl	74_37	+1	known	silent	c.4737	p.I1579	0.469	NULL	pfam_Laminin_N,pfam_EGF_laminin,pfam_Laminin_B_type_IV,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,smart_Laminin_B_subgr,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_N	-	no_errors	LAMC1	HGNC	ENSG00000135862				70	0	0	52	23	30.6667
RGS13	0	genome.wustl.edu	37	1	192628502	192628502	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	1	192628502	192628502	T	C	SNP	RGS13	ENST00000391995	human	ensembl	74_37	+1	known	missense	c.329	p.I110T	0.082	pfam_RGS_dom,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal_superfam,pfscan_Regulat_G_prot_signal_superfam	pfam_RGS_dom,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal_superfam,pfscan_Regulat_G_prot_signal_superfam,prints_RGS_dom	-	no_errors	RGS13	HGNC	ENSG00000127074				79	0	0	45	24	34.7826
EMC1	0	genome.wustl.edu	37	1	19577930	19577930	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	1	19577930	19577930	T	A	SNP	EMC1	ENST00000477853	human	ensembl	74_37	-1	known	missense	c.74	p.D25V	1.000	NULL	pfam_DUF1620,superfamily_Quinonprotein_ADH-like_supfam	-	no_errors	EMC1	HGNC	ENSG00000127463				67	0	0	40	14	25.9259
CFHR1	0	genome.wustl.edu	37	1	196799764	196799764	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	1	196799764	196799764	C	T	SNP	CFHR1	ENST00000320493	human	ensembl	74_37	+1	known	nonsense	c.742	p.R248*	0.000	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	CFHR1	HGNC	ENSG00000244414				167	0	0	113	40	26.1438
ASPM	0	genome.wustl.edu	37	1	197060039	197060039	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	1	197060039	197060039	G	A	SNP	ASPM	ENST00000367409	human	ensembl	74_37	-1	known	missense	c.9577	p.R3193C	0.218	pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,superfamily_ARM-type_fold,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS	pfam_IQ_motif_EF-hand-BS,pfam_CAMSAP_CH,pfam_CH-domain,superfamily_CH-domain,superfamily_P-loop_NTPase,superfamily_ARM-type_fold,smart_CH-domain,smart_IQ_motif_EF-hand-BS,pfscan_CH-domain,pfscan_IQ_motif_EF-hand-BS	-	no_errors	ASPM	HGNC	ENSG00000066279				115	0	0	63	19	23.1707
C1orf106	0	genome.wustl.edu	37	1	200880598	200880598	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	1	200880598	200880598	C	T	SNP	C1orf106	ENST00000367342	human	ensembl	74_37	+1	known	missense	c.1232	p.A411V	0.036	NULL	pfam_DUF3338	-	no_errors	C1orf106	HGNC	ENSG00000163362				363	0	0	260	99	27.5766
UBE2T	0	genome.wustl.edu	37	1	202304780	202304780	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	1	202304780	202304780	G	A	SNP	UBE2T	ENST00000367274	human	ensembl	74_37	-1	known	nonsense	c.103	p.R35*	1.000	pfam_UBQ-conjugat_E2,superfamily_UBQ-conjugating_enzyme/RWD,pfscan_UBQ-conjugat_E2	pfam_UBQ-conjugat_E2,superfamily_UBQ-conjugating_enzyme/RWD,pfscan_UBQ-conjugat_E2	-	no_errors	UBE2T	HGNC	ENSG00000077152				99	0	0	79	42	34.7107
PIK3C2B	0	genome.wustl.edu	37	1	204413529	204413529	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	1	204413529	204413529	C	T	SNP	PIK3C2B	ENST00000367187	human	ensembl	74_37	-1	known	missense	c.2702	p.R901H	0.314	pfam_PInositide-3_kin_accessory_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom	pfam_PI3/4_kinase_cat_dom,pfam_PInositide-3_kin_accessory_dom,pfam_PI3K_C2_dom,pfam_PI3K_Ras-bd_dom,pfam_Phox,pfam_C2_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_dom,superfamily_Phox,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,smart_Phox,smart_C2_dom,pfscan_C2_dom,pfscan_Phox,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3C2B	HGNC	ENSG00000133056				52	0	0	26	12	31.5789
SLC45A3	0	genome.wustl.edu	37	1	205628251	205628251	+	RNA	SNP	T	T	G			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	1	205628251	205628251	T	G	SNP	SLC45A3	ENST00000460934	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.336	-	-	-	no_errors	SLC45A3	HGNC	ENSG00000158715				11	0	0	10	4	28.5714
FAIM3	0	genome.wustl.edu	37	1	207078326	207078326	+	RNA	SNP	C	C	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	1	207078326	207078326	C	T	SNP	FAIM3	ENST00000528654	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	FAIM3	HGNC	ENSG00000162894				121	0	0	83	42	33.6
PINK1	0	genome.wustl.edu	37	1	20964564	20964564	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	1	20964564	20964564	A	C	SNP	PINK1	ENST00000321556	human	ensembl	74_37	+1	known	missense	c.617	p.E206A	0.004	superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	PINK1	HGNC	ENSG00000158828				79	0	0	51	20	28.169
DIEXF	0	genome.wustl.edu	37	1	210006641	210006641	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	1	210006641	210006641	G	A	SNP	DIEXF	ENST00000491415	human	ensembl	74_37	+1	known	missense	c.500	p.S167N	1.000	NULL	pfam_Digest_organ_expansion_fac-prd,superfamily_P-loop_NTPase	-	no_errors	DIEXF	HGNC	ENSG00000117597				138	0	0	106	35	24.8227
ECE1	0	genome.wustl.edu	37	1	21599193	21599193	+	Silent	SNP	G	G	A			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	1	21599193	21599193	G	A	SNP	ECE1	ENST00000374893	human	ensembl	74_37	-1	known	silent	c.492	p.L164	0.027	pfam_Peptidase_M13_N	pfam_Peptidase_M13_N,pfam_Peptidase_M13_C,prints_Peptidase_M13_C	-	no_errors	ECE1	HGNC	ENSG00000117298				63	0	0	46	20	30.303
JMJD4	0	genome.wustl.edu	37	1	227920368	227920368	+	Silent	SNP	T	T	G			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	1	227920368	227920368	T	G	SNP	JMJD4	ENST00000366758	human	ensembl	74_37	-1	known	silent	c.1117	p.R373	1.000	NULL	pfam_JmjC_dom,smart_JmjC_dom,pfscan_JmjC_dom	-	no_errors	JMJD4	HGNC	ENSG00000081692				62	0	0	38	13	25.4902
PRSS38	0	genome.wustl.edu	37	1	228003829	228003829	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	1	228003829	228003829	G	A	SNP	PRSS38	ENST00000366757	human	ensembl	74_37	+1	known	missense	c.187	p.G63S	0.977	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1	pfam_Peptidase_S1,pfam_Peptidase_S1A_nudel,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	PRSS38	HGNC	ENSG00000185888				158	0	0	101	61	37.6543
OBSCN	0	genome.wustl.edu	37	1	228404718	228404718	+	Silent	SNP	C	C	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	1	228404718	228404718	C	T	SNP	OBSCN	ENST00000422127	human	ensembl	74_37	+1	known	silent	c.2382	p.L794	0.000	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,pfam_DH-domain,pfam_IQ_motif_EF-hand-BS,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_Fibronectin_type3,superfamily_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_IQ_motif_EF-hand-BS,smart_DH-domain,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,pfscan_DH-domain	-	no_errors	OBSCN	HGNC	ENSG00000154358				30	0	0	24	11	31.4286
ABCB10	0	genome.wustl.edu	37	1	229685122	229685122	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	1	229685122	229685122	C	T	SNP	ABCB10	ENST00000344517	human	ensembl	74_37	-1	known	missense	c.577	p.G193R	1.000	pfam_ABC_transptr_TM_dom,superfamily_ABC1_TM_dom,pfscan_ABC1_TM_dom	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC1_TM_dom,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom	-	no_errors	ABCB10	HGNC	ENSG00000135776				72	0	0	50	17	25.3731
C1orf198	0	genome.wustl.edu	37	1	230979323	230979323	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	1	230979323	230979323	G	A	SNP	C1orf198	ENST00000366663	human	ensembl	74_37	-1	known	missense	c.704	p.P235L	0.001	NULL	NULL	-	no_errors	C1orf198	HGNC	ENSG00000119280				89	0	0	63	23	26.7442
RYR2	0	genome.wustl.edu	37	1	237666765	237666765	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	1	237666765	237666765	C	T	SNP	RYR2	ENST00000360064	human	ensembl	74_37	+1	known	missense	c.2567	p.T856M	0.994	NULL	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ConA-like_lec_gl_sf,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_hand_dom,pfscan_MIR_motif	-	no_errors	RYR2	HGNC	ENSG00000198626				117	0	0	113	7	5.83333
KIF26B	0	genome.wustl.edu	37	1	245848974	245848974	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	1	245848974	245848974	C	T	SNP	KIF26B	ENST00000407071	human	ensembl	74_37	+1	known	nonsense	c.2689	p.Q897*	1.000	NULL	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF26B	HGNC	ENSG00000162849				35	0	0	22	9	29.0323
ZNF669	0	genome.wustl.edu	37	1	247267342	247267342	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	1	247267342	247267342	G	C	SNP	ZNF669	ENST00000343381	human	ensembl	74_37	-1	known	missense	c.160	p.R54G	0.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF669	HGNC	ENSG00000188295				10	0	0	7	4	36.3636
OR2G3	0	genome.wustl.edu	37	1	247769005	247769005	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	1	247769005	247769005	G	A	SNP	OR2G3	ENST00000320002	human	ensembl	74_37	+1	known	missense	c.118	p.V40M	0.000	prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2G3	HGNC	ENSG00000177476				328	0	0	237	92	27.9635
PTPRU	0	genome.wustl.edu	37	1	29581889	29581889	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	1	29581889	29581889	G	T	SNP	PTPRU	ENST00000345512	human	ensembl	74_37	+1	known	missense	c.176	p.G59V	0.997	pfam_MAM_dom,superfamily_ConA-like_lec_gl_sf,smart_MAM_dom,pfscan_MAM_dom	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_MAM_dom,pfam_Fibronectin_type3,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_MAM_dom,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_MAM_dom,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt,prints_MAM_dom	-	no_errors	PTPRU	HGNC	ENSG00000060656				153	0	0	114	34	22.973
RBBP4	0	genome.wustl.edu	37	1	33134451	33134451	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	1	33134451	33134451	A	G	SNP	RBBP4	ENST00000373493	human	ensembl	74_37	+1	known	missense	c.596	p.D199G	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	pfam_WD40_repeat,pfam_Histone-bd_RBBP4_N,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	RBBP4	HGNC	ENSG00000162521				106	1	0.934579	64	29	31.1828
EPHA10	0	genome.wustl.edu	37	1	38227120	38227120	+	Silent	SNP	G	G	A			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	1	38227120	38227120	G	A	SNP	EPHA10	ENST00000427468	human	ensembl	74_37	-1	known	silent	c.807	p.C269	1.000	pirsf_Tyr_kinase_ephrin_rcpt,superfamily_Growth_fac_rcpt_N_dom	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_SAM/pointed,superfamily_Fibronectin_type3,superfamily_Growth_fac_rcpt_N_dom,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_dom	-	no_errors	EPHA10	HGNC	ENSG00000183317				63	0	0	41	17	29.3103
RLF	0	genome.wustl.edu	37	1	40705156	40705156	+	Silent	SNP	C	C	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	1	40705156	40705156	C	T	SNP	RLF	ENST00000372771	human	ensembl	74_37	+1	known	silent	c.4782	p.Y1594	0.178	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	RLF	HGNC	ENSG00000117000				108	0	0	75	25	25
SLFNL1	0	genome.wustl.edu	37	1	41483496	41483496	+	Silent	SNP	G	G	A			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	1	41483496	41483496	G	A	SNP	SLFNL1	ENST00000302946	human	ensembl	74_37	-1	known	silent	c.768	p.G256	1.000	pfam_ATPase_AAA-4	pfam_ATPase_AAA-4	-	no_errors	SLFNL1	HGNC	ENSG00000171790				89	0	0	65	21	24.4186
TIE1	0	genome.wustl.edu	37	1	43772883	43772883	+	Silent	SNP	C	C	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	1	43772883	43772883	C	T	SNP	TIE1	ENST00000372476	human	ensembl	74_37	+1	known	silent	c.711	p.C237	1.000	smart_EG-like_dom,pfscan_EG-like_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,smart_Ig_sub,smart_EG-like_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_EG-like_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	TIE1	HGNC	ENSG00000066056				115	0	0	35	41	53.9474
DMRTB1	0	genome.wustl.edu	37	1	53927224	53927224	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	1	53927224	53927224	C	T	SNP	DMRTB1	ENST00000371445	human	ensembl	74_37	+1	known	missense	c.656	p.P219L	0.001	NULL	pfam_DM_DNA-bd,superfamily_DM_DNA-bd,smart_DM_DNA-bd,pfscan_DM_DNA-bd	-	no_errors	DMRTB1	HGNC	ENSG00000143006				175	0	0	134	58	30.2083
RERE	0	genome.wustl.edu	37	1	8418972	8418972	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	1	8418972	8418972	G	A	SNP	RERE	ENST00000337907	human	ensembl	74_37	-1	known	missense	c.3623	p.A1208V	0.998	pfam_Atrophin-like	pfam_Atrophin-like,pfam_BAH_dom,pfam_ELM2_dom,pfam_Znf_GATA,superfamily_Homeodomain-like,smart_BAH_dom,smart_SANT/Myb,smart_Znf_GATA,pfscan_BAH_dom,pfscan_ELM2_dom	-	no_errors	RERE	HGNC	ENSG00000142599				120	0	0	79	30	27.5229
BRDT	0	genome.wustl.edu	37	1	92428391	92428391	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	1	92428391	92428391	G	A	SNP	BRDT	ENST00000362005	human	ensembl	74_37	+1	known	missense	c.80	p.R27Q	0.924	superfamily_Bromodomain,smart_Bromodomain	pfam_Bromodomain,superfamily_Bromodomain,smart_Bromodomain,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BRDT	HGNC	ENSG00000137948				185	0	0	200	14	6.54206
ABCA4	0	genome.wustl.edu	37	1	94502716	94502716	+	Silent	SNP	G	G	A			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	1	94502716	94502716	G	A	SNP	ABCA4	ENST00000370225	human	ensembl	74_37	-1	known	silent	c.3798	p.D1266	1.000	tigrfam_Rim_ABC_transpt	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like,tigrfam_Rim_ABC_transpt	-	no_errors	ABCA4	HGNC	ENSG00000198691				158	0	0	104	45	30.2013
SEC31B	0	genome.wustl.edu	37	10	102247423	102247423	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	10	102247423	102247423	T	G	SNP	SEC31B	ENST00000370345	human	ensembl	74_37	-1	known	missense	c.3490	p.M1164L	1.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	SEC31B	HGNC	ENSG00000075826				19	0	0	21	9	30
SUFU	0	genome.wustl.edu	37	10	104356986	104356986	+	Silent	SNP	C	C	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	10	104356986	104356986	C	T	SNP	SUFU	ENST00000369902	human	ensembl	74_37	+1	known	silent	c.846	p.P282	0.006	pfam_SUFU_C,pirsf_Suppressor_of_fused_euk	pfam_SUFU_C,pfam_SUFU-like_domain,pirsf_Suppressor_of_fused_euk	-	no_errors	SUFU	HGNC	ENSG00000107882				182	0	0	104	56	35
NRAP	0	genome.wustl.edu	37	10	115364629	115364629	+	Silent	SNP	G	G	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	10	115364629	115364629	G	T	SNP	NRAP	ENST00000369358	human	ensembl	74_37	-1	known	silent	c.3990	p.P1330	0.060	smart_Nebulin_35r-motif,pfscan_Nebulin_35r-motif	pfam_Nebulin_35r-motif,pfam_Znf_LIM,smart_Znf_LIM,smart_Nebulin_35r-motif,pfscan_Znf_LIM,pfscan_Nebulin_35r-motif,prints_Nebulin	-	no_errors	NRAP	HGNC	ENSG00000197893				151	0	0	107	45	29.6053
UPF2	0	genome.wustl.edu	37	10	11997436	11997436	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	10	11997436	11997436	C	T	SNP	UPF2	ENST00000356352	human	ensembl	74_37	-1	known	missense	c.2645	p.R882Q	1.000	pfam_MIF4G-like_typ-3,superfamily_ARM-type_fold,smart_MIF4G-like_typ-3	pfam_MIF4G-like_typ-3,pfam_Up-fram_suppressor-2,superfamily_ARM-type_fold,smart_MIF4G-like_typ-3	-	no_errors	UPF2	HGNC	ENSG00000151461				108	0	0	64	30	31.9149
CDC123	0	genome.wustl.edu	37	10	12291660	12291660	+	Silent	SNP	C	C	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	10	12291660	12291660	C	T	SNP	CDC123	ENST00000281141	human	ensembl	74_37	+1	known	silent	c.927	p.D309	1.000	pfam_D123,pirsf_Cell_div_Cdc123	pfam_D123,pirsf_Cell_div_Cdc123	-	no_errors	CDC123	HGNC	ENSG00000151465				142	0	0	86	51	37.2263
BEND7	0	genome.wustl.edu	37	10	13541863	13541863	+	Silent	SNP	C	C	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	10	13541863	13541863	C	T	SNP	BEND7	ENST00000396900	human	ensembl	74_37	-1	known	silent	c.363	p.P121	0.003	NULL	pfam_BEN_domain	-	no_errors	BEND7	HGNC	ENSG00000165626				120	0	0	84	36	30
HSPA14	0	genome.wustl.edu	37	10	14896175	14896175	+	Silent	SNP	G	G	A			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	10	14896175	14896175	G	A	SNP	HSPA14	ENST00000378372	human	ensembl	74_37	+1	known	silent	c.786	p.T262	1.000	pfam_Hsp_70_fam,pfam_MreB_Mrl	pfam_Hsp_70_fam,pfam_MreB_Mrl,prints_Hsp_70_fam	-	no_errors	HSPA14	HGNC	ENSG00000187522				161	0	0	105	53	33.5443
PLXDC2	0	genome.wustl.edu	37	10	20290849	20290849	+	Silent	SNP	T	T	C			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	10	20290849	20290849	T	C	SNP	PLXDC2	ENST00000377252	human	ensembl	74_37	+1	known	silent	c.258	p.S86	0.781	NULL	pfam_Plexin_repeat,superfamily_Plexin-like_fold,smart_Plexin-like_fold	-	no_errors	PLXDC2	HGNC	ENSG00000120594				50	0	0	50	12	19.3548
SVIL	0	genome.wustl.edu	37	10	29811362	29811362	+	Silent	SNP	G	G	A			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	10	29811362	29811362	G	A	SNP	SVIL	ENST00000355867	human	ensembl	74_37	-1	known	silent	c.3366	p.S1122	1.000	NULL	pfam_Gelsolin_dom,pfam_Villin_headpiece,superfamily_Villin_headpiece,smart_Villin/Gelsolin,smart_Villin_headpiece,pfscan_Villin_headpiece,prints_Villin/Gelsolin	-	no_errors	SVIL	HGNC	ENSG00000197321				88	0	0	51	28	35.443
ZMYND11	0	genome.wustl.edu	37	10	298390	298390	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	10	298390	298390	A	G	SNP	ZMYND11	ENST00000381591	human	ensembl	74_37	+1	known	missense	c.1789	p.T597A	1.000	pfscan_Znf_MYND	pfam_PWWP_dom,pfam_Bromodomain,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_Bromodomain,smart_PWWP_dom,pfscan_PWWP_dom,pfscan_Znf_MYND,pfscan_Znf_PHD-finger,pfscan_Bromodomain	-	no_errors	ZMYND11	HGNC	ENSG00000015171				189	1	0.526316	123	48	28.0702
GPRIN2	0	genome.wustl.edu	37	10	47000018	47000018	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	10	47000018	47000018	C	T	SNP	GPRIN2	ENST00000374314	human	ensembl	74_37	+1	known	missense	c.1138	p.R380W	1.000	NULL	NULL	-	no_errors	GPRIN2	HGNC	ENSG00000204175				155	0	0	114	14	10.9375
GDF10	0	genome.wustl.edu	37	10	48429407	48429407	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	10	48429407	48429407	C	T	SNP	GDF10	ENST00000224605	human	ensembl	74_37	-1	known	missense	c.479	p.R160H	1.000	pirsf_BMP3/GDF10	pfam_TGF-b_C,pfam_TGF-b_N,smart_TGF-b_C,pirsf_BMP3/GDF10	-	no_errors	GDF10	HGNC	ENSG00000107623				35	0	0	32	8	20
C10orf128	0	genome.wustl.edu	37	10	50374941	50374941	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	10	50374941	50374941	G	T	SNP	C10orf128	ENST00000374151	human	ensembl	74_37	-1	known	missense	c.211	p.L71M	0.000	NULL	NULL	-	no_errors	C10orf128	HGNC	ENSG00000204161				144	0	0	104	29	21.8045
PCDH15	0	genome.wustl.edu	37	10	55570438	55570438	+	Splice_Site	SNP	T	T	G			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	10	55570438	55570438	T	G	SNP	PCDH15	ENST00000414778	human	ensembl	74_37	-1	known	splice_site	c.4374-2	e33-2	1.000	-	-	-	no_errors	PCDH15	HGNC	ENSG00000150275				133	0	0	108	27	20
ANK3	0	genome.wustl.edu	37	10	62021641	62021641	+	Silent	SNP	C	C	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	10	62021641	62021641	C	T	SNP	ANK3	ENST00000280772	human	ensembl	74_37	-1	known	silent	c.774	p.A258	0.999	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_ZU5,pfam_Death_domain,superfamily_Ankyrin_rpt-contain_dom,superfamily_DEATH-like_dom,smart_Ankyrin_rpt,smart_ZU5,smart_Death_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Death_domain,pfscan_ZU5,prints_Ankyrin_rpt	-	no_errors	ANK3	HGNC	ENSG00000151150				81	0	0	57	18	24
ZNF365	0	genome.wustl.edu	37	10	64136621	64136621	+	Silent	SNP	C	C	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	10	64136621	64136621	C	T	SNP	ZNF365	ENST00000410046	human	ensembl	74_37	+1	known	silent	c.669	p.D223	0.219	NULL	NULL	-	no_errors	ZNF365	HGNC	ENSG00000138311				209	0	0	140	71	33.6493
VCL	0	genome.wustl.edu	37	10	75877825	75877825	+	Silent	SNP	T	T	C			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	10	75877825	75877825	T	C	SNP	VCL	ENST00000211998	human	ensembl	74_37	+1	known	silent	c.3303	p.S1101	1.000	pfam_Vinculin/catenin,superfamily_Vinculin/catenin	pfam_Vinculin/catenin,superfamily_Vinculin/catenin,prints_Vinculin	-	no_errors	VCL	HGNC	ENSG00000035403				215	0	0	145	79	35.2679
LRIT2	0	genome.wustl.edu	37	10	85984651	85984651	+	Silent	SNP	C	C	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	10	85984651	85984651	C	T	SNP	LRIT2	ENST00000538192	human	ensembl	74_37	-1	known	silent	c.330	p.L110	0.998	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	pfam_Ig_I-set,pfam_Leu-rich_rpt,superfamily_Fibronectin_type3,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	LRIT2	HGNC	ENSG00000204033				255	0	0	187	83	30.7407
TNKS2	0	genome.wustl.edu	37	10	93622745	93622745	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	10	93622745	93622745	G	A	SNP	TNKS2	ENST00000371627	human	ensembl	74_37	+1	known	missense	c.3490	p.V1164I	0.807	pfscan_Poly(ADP-ribose)pol_cat_dom	pfam_Ankyrin_rpt,pfam_Poly(ADP-ribose)pol_cat_dom,pfam_SAM_2,pfam_SAM_type1,superfamily_Ankyrin_rpt-contain_dom,superfamily_SAM/pointed,smart_Ankyrin_rpt,smart_SAM,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SAM,pfscan_Poly(ADP-ribose)pol_cat_dom,prints_Ankyrin_rpt	-	no_errors	TNKS2	HGNC	ENSG00000107854				34	0	0	11	5	31.25
CRTAC1	0	genome.wustl.edu	37	10	99683148	99683148	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	10	99683148	99683148	G	A	SNP	CRTAC1	ENST00000370597	human	ensembl	74_37	-1	known	missense	c.431	p.T144M	1.000	NULL	pfam_FG-GAP,pfam_UnbV_ASPIC,pfam_EGF-like_Ca-bd_dom,smart_EGF-like_Ca-bd_dom	-	no_errors	CRTAC1	HGNC	ENSG00000095713				115	0	0	79	51	39.2308
PGR	0	genome.wustl.edu	37	11	100999546	100999546	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	11	100999546	100999546	C	T	SNP	PGR	ENST00000325455	human	ensembl	74_37	-1	known	missense	c.256	p.A86T	0.021	pfam_Progest_rcpt	pfam_Progest_rcpt,pfam_Znf_hrmn_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Progest_rcpt,prints_Znf_hrmn_rcpt,prints_Str_hrmn_rcpt	-	no_errors	PGR	HGNC	ENSG00000082175				72	0	0	39	19	32.7586
ZW10	0	genome.wustl.edu	37	11	113629418	113629418	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	11	113629418	113629418	A	C	SNP	ZW10	ENST00000200135	human	ensembl	74_37	-1	known	missense	c.591	p.S197R	0.998	pfam_RZZ-complex_Zw10	pfam_RZZ-complex_Zw10	-	no_errors	ZW10	HGNC	ENSG00000086827				84	0	0	46	28	37.8378
CSNK2A3	0	genome.wustl.edu	37	11	11374527	11374527	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	11	11374527	11374527	C	T	SNP	CSNK2A3	ENST00000528848	human	ensembl	74_37	-1	novel	missense	c.140	p.R47Q	0.985	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Aminoglycoside_PTrfase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	CSNK2A3	HGNC	ENSG00000254598				127	0	0	77	31	28.7037
C11orf71	0	genome.wustl.edu	37	11	114270731	114270731	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	11	114270731	114270731	T	G	SNP	C11orf71	ENST00000325636	human	ensembl	74_37	-1	known	missense	c.323	p.Q108P	0.023	NULL	NULL	-	no_errors	C11orf71	HGNC	ENSG00000180425				83	0	0	65	23	26.1364
MICALCL	0	genome.wustl.edu	37	11	12315408	12315408	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	11	12315408	12315408	C	T	SNP	MICALCL	ENST00000256186	human	ensembl	74_37	+1	known	nonsense	c.430	p.Q144*	0.019	NULL	pfam_DUF3585,smart_ProQ/FinO	-	no_errors	MICALCL	HGNC	ENSG00000133808				83	0	0	49	23	31.9444
ROBO4	0	genome.wustl.edu	37	11	124767016	124767016	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	11	124767016	124767016	G	A	SNP	ROBO4	ENST00000306534	human	ensembl	74_37	-1	known	missense	c.212	p.P71L	0.990	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	ROBO4	HGNC	ENSG00000154133				43	0	0	13	11	45.8333
TMEM45B	0	genome.wustl.edu	37	11	129724691	129724691	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	11	129724691	129724691	C	T	SNP	TMEM45B	ENST00000281441	human	ensembl	74_37	+1	known	missense	c.365	p.A122V	0.989	pfam_DUF716_TMEM45	pfam_DUF716_TMEM45	-	no_errors	TMEM45B	HGNC	ENSG00000151715				122	0	0	77	20	20.6186
LDHA	0	genome.wustl.edu	37	11	18428916	18428916	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	11	18428916	18428916	G	A	SNP	LDHA	ENST00000396222	human	ensembl	74_37	+1	putative	missense	c.818	p.C273Y	0.001	NULL	pfam_Lactate/malate_DH_N,pfam_Lactate/malate_DH_C,superfamily_Lactate_DH/Glyco_Ohase_4_C,pirsf_L-lactate/malate_DH,prints_L-lactate/malate_DH	-	no_errors	LDHA	HGNC	ENSG00000134333				38	0	0	29	9	23.6842
RIC8A	0	genome.wustl.edu	37	11	212613	212613	+	Splice_Site	SNP	A	A	G			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	11	212613	212613	A	G	SNP	RIC8A	ENST00000526104	human	ensembl	74_37	+1	known	splice_site	c.1066-2	e7-2	1.000	-	-	-	no_errors	RIC8A	HGNC	ENSG00000177963				26	0	0	22	6	21.4286
FBXO3	0	genome.wustl.edu	37	11	33773099	33773099	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	11	33773099	33773099	C	T	SNP	FBXO3	ENST00000265651	human	ensembl	74_37	-1	known	missense	c.779	p.G260D	1.000	NULL	pfam_ApaG_domain,pfam_F-box_dom,superfamily_ApaG_domain,superfamily_F-box_dom,smart_F-box_dom,smart_SMI1/KNR4_like_dom,pfscan_ApaG_domain,pfscan_F-box_dom	-	no_errors	FBXO3	HGNC	ENSG00000110429				50	0	0	54	12	18.1818
CAT	0	genome.wustl.edu	37	11	34485651	34485651	+	Splice_Site	SNP	G	G	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	11	34485651	34485651	G	T	SNP	CAT	ENST00000241052	human	ensembl	74_37	+1	known	splice_site	c.1196-1	e10-1	1.000	-	-	-	no_errors	CAT	HGNC	ENSG00000121691				218	1	0.456621	148	77	34.2222
ANO9	0	genome.wustl.edu	37	11	428612	428612	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	11	428612	428612	C	T	SNP	ANO9	ENST00000332826	human	ensembl	74_37	-1	known	missense	c.1048	p.V350I	0.935	pfam_Anoctamin	pfam_Anoctamin	-	no_errors	ANO9	HGNC	ENSG00000185101				60	0	0	45	21	31.8182
CHST1	0	genome.wustl.edu	37	11	45671729	45671729	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	11	45671729	45671729	C	T	SNP	CHST1	ENST00000308064	human	ensembl	74_37	-1	known	missense	c.745	p.D249N	1.000	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase,pirsf_Carbohydrate_sulfotransferase	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase,pirsf_Carbohydrate_sulfotransferase	-	no_errors	CHST1	HGNC	ENSG00000175264				133	0	0	95	45	32.1429
CKAP5	0	genome.wustl.edu	37	11	46842731	46842731	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	11	46842731	46842731	G	A	SNP	CKAP5	ENST00000415402	human	ensembl	74_37	-1	known	missense	c.52	p.H18Y	1.000	superfamily_ARM-type_fold	pfam_CLASP_N_dom,pfam_HEAT,superfamily_ARM-type_fold,superfamily_Homing_endonucl,pfscan_HEAT_type_2	-	no_errors	CKAP5	HGNC	ENSG00000175216				253	0	0	147	74	33.4842
KBTBD4	0	genome.wustl.edu	37	11	47599113	47599113	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	11	47599113	47599113	A	G	SNP	KBTBD4	ENST00000430070	human	ensembl	74_37	-1	known	missense	c.487	p.C163R	1.000	pfam_BACK,smart_BACK	pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,pfscan_BTB/POZ-like	-	no_errors	KBTBD4	HGNC	ENSG00000123444				257	0	0	201	65	24.4361
OR51G2	0	genome.wustl.edu	37	11	4936206	4936206	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	11	4936206	4936206	C	T	SNP	OR51G2	ENST00000322013	human	ensembl	74_37	-1	known	missense	c.688	p.V230M	0.105	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR51G2	HGNC	ENSG00000176893				71	0	0	84	5	5.61798
TRIM48	0	genome.wustl.edu	37	11	55035844	55035844	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	11	55035844	55035844	T	C	SNP	TRIM48	ENST00000417545	human	ensembl	74_37	+1	known	missense	c.574	p.Y192H	0.183	NULL	pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,smart_Znf_RING,smart_Znf_B-box,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM48	HGNC	ENSG00000150244				154	0	0	162	15	8.47458
UBQLNL	0	genome.wustl.edu	37	11	5536466	5536466	+	Silent	SNP	A	A	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	11	5536466	5536466	A	T	SNP	UBQLNL	ENST00000380184	human	ensembl	74_37	-1	putative	silent	c.1206	p.S402	0.002	NULL	pfam_Ubiquitin_dom,smart_Ubiquitin_dom,pfscan_Ubiquitin_supergroup	-	no_errors	UBQLNL	HGNC	ENSG00000175518				144	0	0	99	40	28.777
OR52L1	0	genome.wustl.edu	37	11	6007639	6007639	+	Silent	SNP	A	A	G			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	11	6007639	6007639	A	G	SNP	OR52L1	ENST00000332249	human	ensembl	74_37	-1	known	silent	c.522	p.L174	0.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR52L1	HGNC	ENSG00000183313				79	0	0	61	16	20.7792
CNGA4	0	genome.wustl.edu	37	11	6261463	6261463	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	11	6261463	6261463	G	A	SNP	CNGA4	ENST00000379936	human	ensembl	74_37	+1	known	missense	c.439	p.A147T	0.001	pfam_Ion_trans_dom	pfam_cNMP-bd_dom,pfam_Ion_trans_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom	-	no_errors	CNGA4	HGNC	ENSG00000132259				299	0	0	174	96	35.5556
ILK	0	genome.wustl.edu	37	11	6630785	6630785	+	Silent	SNP	C	C	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	11	6630785	6630785	C	T	SNP	ILK	ENST00000299421	human	ensembl	74_37	+1	known	silent	c.771	p.C257	0.997	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Integrin-linked_kinase,pfscan_Prot_kinase_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ankyrin_rpt,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Integrin-linked_kinase,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	ILK	HGNC	ENSG00000166333				221	0	0	146	62	29.8077
MRGPRD	0	genome.wustl.edu	37	11	68747740	68747740	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	11	68747740	68747740	A	G	SNP	MRGPRD	ENST00000309106	human	ensembl	74_37	-1	known	missense	c.716	p.I239T	0.209	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	-	no_errors	MRGPRD	HGNC	ENSG00000172938				42	0	0	38	13	25.4902
CCND1	0	genome.wustl.edu	37	11	69465973	69465973	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	11	69465973	69465973	G	A	SNP	CCND1	ENST00000227507	human	ensembl	74_37	+1	known	missense	c.811	p.A271T	0.000	pfam_Cyclin_C-dom,pirsf_Cyclin_A/B/D/E	pfam_Cyclin_N,pfam_Cyclin_C-dom,superfamily_Cyclin-like,smart_Cyclin-like,pirsf_Cyclin_A/B/D/E	-	no_errors	CCND1	HGNC	ENSG00000110092				54	0	0	38	15	28.3019
ZNF215	0	genome.wustl.edu	37	11	6953704	6953704	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	11	6953704	6953704	C	A	SNP	ZNF215	ENST00000278319	human	ensembl	74_37	+1	known	missense	c.201	p.S67R	0.907	pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,pfscan_Tscrpt_reg_SCAN	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF215	HGNC	ENSG00000149054				121	0	0	96	13	11.9266
CHRDL2	0	genome.wustl.edu	37	11	74421903	74421903	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	11	74421903	74421903	G	A	SNP	CHRDL2	ENST00000376324	human	ensembl	74_37	-1	known	missense	c.269	p.A90V	1.000	NULL	NULL	-	no_errors	CHRDL2	HGNC	ENSG00000054938				50	0	0	28	15	34.8837
UVRAG	0	genome.wustl.edu	37	11	75694509	75694509	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	11	75694509	75694509	C	T	SNP	UVRAG	ENST00000356136	human	ensembl	74_37	+1	known	missense	c.778	p.R260W	0.997	NULL	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom	-	no_errors	UVRAG	HGNC	ENSG00000198382				74	0	0	43	24	35.8209
WNT11	0	genome.wustl.edu	37	11	75907667	75907667	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	11	75907667	75907667	C	T	SNP	WNT11	ENST00000322563	human	ensembl	74_37	-1	known	missense	c.179	p.R60H	1.000	pfam_Wnt,smart_Wnt	pfam_Wnt,smart_Wnt,prints_Wnt	-	no_errors	WNT11	HGNC	ENSG00000085741				85	0	0	69	36	34.2857
CEND1	0	genome.wustl.edu	37	11	788424	788424	+	Silent	SNP	C	C	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	11	788424	788424	C	T	SNP	CEND1	ENST00000330106	human	ensembl	74_37	-1	known	silent	c.153	p.P51	0.949	NULL	NULL	-	no_errors	CEND1	HGNC	ENSG00000184524				111	1	0.892857	70	34	32.6923
PCF11	0	genome.wustl.edu	37	11	82877632	82877632	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	11	82877632	82877632	C	T	SNP	PCF11	ENST00000298281	human	ensembl	74_37	+1	known	nonsense	c.1693	p.R565*	0.606	NULL	pfam_RNA_pol_II-bd,superfamily_ENTH_VHS,smart_CID_dom	-	no_errors	PCF11	HGNC	ENSG00000165494				77	0	0	81	32	28.3186
FAT3	0	genome.wustl.edu	37	11	92616283	92616283	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	11	92616283	92616283	G	A	SNP	FAT3	ENST00000298047	human	ensembl	74_37	+1	known	missense	c.12661	p.V4221I	0.996	NULL	pfam_Cadherin,pfam_Laminin_G,pfam_EGF-like_Ca-bd_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,smart_EG-like_dom,smart_Laminin_G,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT3	HGNC	ENSG00000165323				183	0	0	97	46	32.1678
C11orf54	0	genome.wustl.edu	37	11	93494832	93494832	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	11	93494832	93494832	C	T	SNP	C11orf54	ENST00000331239	human	ensembl	74_37	+1	known	missense	c.926	p.T309M	1.000	NULL	pfam_DUF1907	-	no_errors	C11orf54	HGNC	ENSG00000182919				134	0	0	99	36	26.6667
SESN3	0	genome.wustl.edu	37	11	94922973	94922973	+	Silent	SNP	T	T	C			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	11	94922973	94922973	T	C	SNP	SESN3	ENST00000536441	human	ensembl	74_37	-1	known	silent	c.495	p.R165	0.890	pfam_PA26	pfam_PA26	-	no_errors	SESN3	HGNC	ENSG00000149212				83	0	0	55	23	29.4872
STAB2	0	genome.wustl.edu	37	12	104156095	104156095	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	12	104156095	104156095	T	C	SNP	STAB2	ENST00000388887	human	ensembl	74_37	+1	known	missense	c.7403	p.I2468T	0.016	NULL	pfam_FAS1_domain,pfam_Link,superfamily_C-type_lectin_fold,superfamily_FAS1_domain,superfamily_Growth_fac_rcpt_N_dom,smart_EG-like_dom,smart_EGF_laminin,smart_EGF-like_Ca-bd_dom,smart_FAS1_domain,smart_Link,pfscan_EG-like_dom,pfscan_FAS1_domain,pfscan_Link	-	no_errors	STAB2	HGNC	ENSG00000136011				161	0	0	109	34	23.7762
NUAK1	0	genome.wustl.edu	37	12	106460931	106460931	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	12	106460931	106460931	C	T	SNP	NUAK1	ENST00000261402	human	ensembl	74_37	-1	known	missense	c.1635	p.M545I	0.908	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	NUAK1	HGNC	ENSG00000074590				81	0	0	39	23	37.0968
UBE3B	0	genome.wustl.edu	37	12	109967832	109967832	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	12	109967832	109967832	G	A	SNP	UBE3B	ENST00000342494	human	ensembl	74_37	+1	known	missense	c.2765	p.R922H	1.000	pfam_HECT,superfamily_HECT,smart_HECT,pfscan_HECT	pfam_HECT,pfam_IQ_motif_EF-hand-BS,superfamily_HECT,superfamily_P-loop_NTPase,smart_IQ_motif_EF-hand-BS,smart_HECT,pfscan_HECT,pfscan_IQ_motif_EF-hand-BS	-	no_errors	UBE3B	HGNC	ENSG00000151148				132	0	0	101	48	32.2148
GIT2	0	genome.wustl.edu	37	12	110370843	110370843	+	Silent	SNP	G	G	A			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	12	110370843	110370843	G	A	SNP	GIT2	ENST00000355312	human	ensembl	74_37	-1	known	silent	c.2220	p.Y740	0.990	pfam_GIT1_C	pfam_GIT1_C,pfam_GIT_SHD,pfam_ArfGAP,superfamily_Ankyrin_rpt-contain_dom,smart_ArfGAP,smart_Ankyrin_rpt,smart_GIT_SHD,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_ArfGAP,prints_ArfGAP	-	no_errors	GIT2	HGNC	ENSG00000139436				86	0	0	57	23	28.75
IFT81	0	genome.wustl.edu	37	12	110643263	110643263	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	12	110643263	110643263	C	T	SNP	IFT81	ENST00000242591	human	ensembl	74_37	+1	known	missense	c.1660	p.R554C	0.999	NULL	NULL	-	no_errors	IFT81	HGNC	ENSG00000122970				36	0	0	22	12	35.2941
OAS1	0	genome.wustl.edu	37	12	113348996	113348996	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	12	113348996	113348996	A	G	SNP	OAS1	ENST00000445409	human	ensembl	74_37	+1	known	missense	c.610	p.K204E	1.000	pfam_2-5-oligoAdlate_synth_1_dom2/C	pfam_2-5-oligoAdlate_synth_1_dom2/C,pfam_Nucleotidyltransferase,pfscan_2-5-oligoadenylate_synth_N	-	no_errors	OAS1	HGNC	ENSG00000089127				82	0	0	61	25	29.0698
CCDC62	0	genome.wustl.edu	37	12	123270349	123270349	+	Silent	SNP	G	G	A			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	12	123270349	123270349	G	A	SNP	CCDC62	ENST00000253079	human	ensembl	74_37	+1	known	silent	c.480	p.T160	0.074	superfamily_Prefoldin	superfamily_Prefoldin	-	no_errors	CCDC62	HGNC	ENSG00000130783				196	0	0	124	55	30.7263
EIF2B1	0	genome.wustl.edu	37	12	124106442	124106442	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	12	124106442	124106442	G	A	SNP	EIF2B1	ENST00000424014	human	ensembl	74_37	-1	known	missense	c.779	p.A260V	0.000	pfam_IF-2B-related	pfam_IF-2B-related	-	no_errors	EIF2B1	HGNC	ENSG00000111361				45	0	0	31	14	31.1111
GOLGA3	0	genome.wustl.edu	37	12	133359063	133359063	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	12	133359063	133359063	C	T	SNP	GOLGA3	ENST00000204726	human	ensembl	74_37	-1	known	missense	c.3284	p.G1095D	1.000	NULL	superfamily_Prefoldin	-	no_errors	GOLGA3	HGNC	ENSG00000090615				160	0	0	107	33	23.5714
SOX5	0	genome.wustl.edu	37	12	23689454	23689454	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	12	23689454	23689454	G	A	SNP	SOX5	ENST00000451604	human	ensembl	74_37	-1	known	missense	c.1921	p.R641C	1.000	NULL	pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	-	no_errors	SOX5	HGNC	ENSG00000134532				122	0	0	85	24	22.0183
FAR2	0	genome.wustl.edu	37	12	29469849	29469849	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	12	29469849	29469849	G	A	SNP	FAR2	ENST00000182377	human	ensembl	74_37	+1	known	missense	c.1031	p.S344N	1.000	NULL	pfam_Male_sterile_NAD-bd,pfam_FAR,pfam_Epimerase_deHydtase,pfam_3Beta_OHSteriod_DH/Estase,pfam_Polysac_CapD-like	-	no_errors	FAR2	HGNC	ENSG00000064763				337	0	0	207	106	33.8658
TEAD4	0	genome.wustl.edu	37	12	3104142	3104142	+	Silent	SNP	C	C	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	12	3104142	3104142	C	T	SNP	TEAD4	ENST00000359864	human	ensembl	74_37	+1	known	silent	c.210	p.D70	0.601	pfam_TEA/ATTS,smart_TEA/ATTS,pirsf_TEF,pfscan_TEA/ATTS	pfam_TEA/ATTS,smart_TEA/ATTS,pirsf_TEF,pfscan_TEA/ATTS,prints_TEA/ATTS	-	no_errors	TEAD4	HGNC	ENSG00000197905				151	0	0	114	61	34.8571
PUS7L	0	genome.wustl.edu	37	12	44148200	44148200	+	Silent	SNP	T	T	C			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	12	44148200	44148200	T	C	SNP	PUS7L	ENST00000344862	human	ensembl	74_37	-1	known	silent	c.849	p.K283	0.724	superfamily_PsdUridine_synth_cat_dom,pirsf_PsdUridine_synth_TruD_euk	pfam_PsdUridine_synth_TruD,superfamily_PsdUridine_synth_cat_dom,pirsf_PsdUridine_synth_TruD_euk,pfscan_PsdUridine_synth_TruD_insert,tigrfam_PsdUridine_synth_TruD	-	no_errors	PUS7L	HGNC	ENSG00000129317				310	0	0	209	75	26.4085
ARID2	0	genome.wustl.edu	37	12	46285639	46285639	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	12	46285639	46285639	T	C	SNP	ARID2	ENST00000334344	human	ensembl	74_37	+1	known	missense	c.4999	p.C1667R	1.000	NULL	pfam_ARID/BRIGHT_DNA-bd,pfam_DNA-bd_RFX,superfamily_ARID/BRIGHT_DNA-bd,superfamily_ARM-type_fold,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID2	HGNC	ENSG00000189079				250	0	0	235	15	6
NDUFA9	0	genome.wustl.edu	37	12	4778941	4778941	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	12	4778941	4778941	T	C	SNP	NDUFA9	ENST00000266544	human	ensembl	74_37	+1	known	missense	c.758	p.V253A	0.966	NULL	pfam_3Beta_OHSteriod_DH/Estase,pfam_Epimerase_deHydtase,pfam_NmrA	-	no_errors	NDUFA9	HGNC	ENSG00000139180				179	0	0	127	38	23.0303
KCNA6	0	genome.wustl.edu	37	12	4919240	4919240	+	Silent	SNP	G	G	A			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	12	4919240	4919240	G	A	SNP	KCNA6	ENST00000280684	human	ensembl	74_37	+1	known	silent	c.33	p.A11	0.991	prints_K_chnl_volt-dep_Kv1.6	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv1.6,prints_K_chnl_volt-dep_Kv1,prints_K_chnl_volt-dep_Kv	-	no_errors	KCNA6	HGNC	ENSG00000151079				45	0	0	36	9	20
TROAP	0	genome.wustl.edu	37	12	49724166	49724166	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	12	49724166	49724166	A	G	SNP	TROAP	ENST00000257909	human	ensembl	74_37	+1	known	missense	c.1538	p.Q513R	0.557	NULL	NULL	-	no_errors	TROAP	HGNC	ENSG00000135451				220	0	0	132	48	26.6667
C1QL4	0	genome.wustl.edu	37	12	49729777	49729777	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	12	49729777	49729777	T	C	SNP	C1QL4	ENST00000334221	human	ensembl	74_37	-1	known	missense	c.484	p.M162V	0.999	pfam_C1q,superfamily_Tumour_necrosis_fac-like_dom,smart_C1q,pfscan_C1q,prints_C1q	pfam_C1q,superfamily_Tumour_necrosis_fac-like_dom,smart_C1q,pfscan_C1q,prints_C1q	-	no_errors	C1QL4	HGNC	ENSG00000186897				32	0	0	16	6	27.2727
FAM186B	0	genome.wustl.edu	37	12	49993929	49993929	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	12	49993929	49993929	C	A	SNP	FAM186B	ENST00000257894	human	ensembl	74_37	-1	known	missense	c.1494	p.E498D	1.000	NULL	NULL	-	no_errors	FAM186B	HGNC	ENSG00000135436				78	0	0	49	26	34.6667
HOXC9	0	genome.wustl.edu	37	12	54394139	54394139	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	12	54394139	54394139	C	T	SNP	HOXC9	ENST00000303450	human	ensembl	74_37	+1	known	missense	c.167	p.A56V	1.000	pfam_Hox9_activation_N,pirsf_Homeobox_Hox9	pfam_Hox9_activation_N,pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pirsf_Homeobox_Hox9,pfscan_Homeobox_dom,prints_Homeobox_metazoa	-	no_errors	HOXC9	HGNC	ENSG00000180806				60	0	0	43	18	29.5082
DGKA	0	genome.wustl.edu	37	12	56332996	56332996	+	Silent	SNP	T	T	C			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	12	56332996	56332996	T	C	SNP	DGKA	ENST00000331886	human	ensembl	74_37	+1	known	silent	c.501	p.I167	0.997	smart_EF_hand_dom,pfscan_EF_hand_dom	pfam_Diacylglycerol_kin_accessory,pfam_Diacylglycerol_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,smart_EF_hand_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Diacylglycerol_kinase_cat_dom,smart_Diacylglycerol_kin_accessory,pfscan_EF_hand_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd	-	no_errors	DGKA	HGNC	ENSG00000065357				113	0	0	106	8	7.01754
ESYT1	0	genome.wustl.edu	37	12	56525096	56525096	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	12	56525096	56525096	T	C	SNP	ESYT1	ENST00000267113	human	ensembl	74_37	+1	known	missense	c.710	p.M237T	1.000	NULL	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,prints_C2_dom,pfscan_C2_dom	-	no_errors	ESYT1	HGNC	ENSG00000139641				154	0	0	108	56	34.1463
NACA	0	genome.wustl.edu	37	12	57114329	57114329	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	12	57114329	57114329	T	C	SNP	NACA	ENST00000454682	human	ensembl	74_37	-1	known	missense	c.985	p.S329G	0.000	NULL	pfam_Nas_poly-pep-assoc_cplx_dom,superfamily_UBA-like,pfscan_Nas_poly-pep-assoc_cplx_dom	-	no_errors	NACA	HGNC	ENSG00000196531				42	0	0	35	15	30
NACA	0	genome.wustl.edu	37	12	57114975	57114975	+	Silent	SNP	T	T	C			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	12	57114975	57114975	T	C	SNP	NACA	ENST00000454682	human	ensembl	74_37	-1	known	silent	c.339	p.P113	1.000	NULL	pfam_Nas_poly-pep-assoc_cplx_dom,superfamily_UBA-like,pfscan_Nas_poly-pep-assoc_cplx_dom	-	no_errors	NACA	HGNC	ENSG00000196531				37	0	0	28	15	34.8837
R3HDM2	0	genome.wustl.edu	37	12	57648686	57648686	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	12	57648686	57648686	G	A	SNP	R3HDM2	ENST00000347140	human	ensembl	74_37	-1	known	missense	c.2801	p.A934V	1.000	NULL	pfam_R3H_ss-bd,smart_R3H_ss-bd,pfscan_R3H_ss-bd	-	no_errors	R3HDM2	HGNC	ENSG00000179912				89	0	0	62	30	32.6087
PPM1H	0	genome.wustl.edu	37	12	63113972	63113972	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	12	63113972	63113972	C	A	SNP	PPM1H	ENST00000228705	human	ensembl	74_37	-1	known	missense	c.1052	p.R351M	1.000	superfamily_PP2C-like_dom,smart_PP2C-like_dom	pfam_PP2C-like_dom,superfamily_PP2C-like_dom,smart_PP2C-like_dom	-	no_errors	PPM1H	HGNC	ENSG00000111110				180	0	0	136	31	18.5629
TNFRSF1A	0	genome.wustl.edu	37	12	6440184	6440184	+	RNA	SNP	A	A	G			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	12	6440184	6440184	A	G	SNP	TNFRSF1A	ENST00000535038	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.021	-	-	-	no_errors	TNFRSF1A	HGNC	ENSG00000067182				17	0	0	4	5	55.5556
B4GALNT3	0	genome.wustl.edu	37	12	661272	661272	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	12	661272	661272	G	T	SNP	B4GALNT3	ENST00000266383	human	ensembl	74_37	+1	known	missense	c.1151	p.S384I	1.000	NULL	pfam_PA14,pfam_Chond_GalNAc,smart_PA14	-	no_errors	B4GALNT3	HGNC	ENSG00000139044				175	0	0	122	49	28.655
TMBIM4	0	genome.wustl.edu	37	12	66531853	66531853	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	12	66531853	66531853	T	A	SNP	TMBIM4	ENST00000358230	human	ensembl	74_37	-1	known	missense	c.604	p.M202L	1.000	pfam_Bax_inhibitor_1-related	pfam_Bax_inhibitor_1-related	-	no_errors	TMBIM4	HGNC	ENSG00000155957				156	0	0	87	53	37.8571
CHD4	0	genome.wustl.edu	37	12	6701626	6701626	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	12	6701626	6701626	C	T	SNP	CHD4	ENST00000309577	human	ensembl	74_37	-1	known	missense	c.2881	p.D961N	1.000	pfam_SNF2_N,superfamily_P-loop_NTPase	pfam_CHD_C2,pfam_DUF1086,pfam_SNF2_N,pfam_CHD_N,pfam_DUF1087,pfam_Znf_PHD-finger,pfam_Chromo_domain,pfam_Helicase_C,pfam_HDA_complex_subunit-2/3,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,superfamily_Chromodomain-like,superfamily_Znf_FYVE_PHD,superfamily_HMG_box_dom,superfamily_Homeodomain-like,smart_Znf_PHD,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Znf_PHD-finger,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD4	HGNC	ENSG00000111642				175	0	0	131	8	5.7554
CAND1	0	genome.wustl.edu	37	12	67696213	67696213	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	12	67696213	67696213	T	A	SNP	CAND1	ENST00000545606	human	ensembl	74_37	+1	known	missense	c.1111	p.F371I	1.000	superfamily_ARM-type_fold	pfam_TATA-bd_TIP120,pfam_HEAT,superfamily_ARM-type_fold	-	no_errors	CAND1	HGNC	ENSG00000111530				333	0	0	227	112	33.0383
CD163L1	0	genome.wustl.edu	37	12	7548934	7548934	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	12	7548934	7548934	G	A	SNP	CD163L1	ENST00000313599	human	ensembl	74_37	-1	known	missense	c.1807	p.R603W	0.000	pfam_SRCR,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_SRCR	pfam_SRCR,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_SRCR,prints_SRCR	-	no_errors	CD163L1	HGNC	ENSG00000177675				52	0	0	33	18	35.2941
NAV3	0	genome.wustl.edu	37	12	78583914	78583914	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	12	78583914	78583914	T	G	SNP	NAV3	ENST00000397909	human	ensembl	74_37	+1	known	missense	c.6206	p.L2069R	1.000	pfam_ATPase_AAA_core,superfamily_P-loop_NTPase,smart_AAA+_ATPase	pfam_CH-domain,pfam_ATPase_AAA_core,superfamily_CH-domain,superfamily_P-loop_NTPase,smart_CH-domain,smart_AAA+_ATPase,pfscan_CH-domain	-	no_errors	NAV3	HGNC	ENSG00000067798				107	0	0	103	12	10.4348
PZP	0	genome.wustl.edu	37	12	9301589	9301589	+	Silent	SNP	A	A	G			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	12	9301589	9301589	A	G	SNP	PZP	ENST00000261336	human	ensembl	74_37	-1	known	silent	c.4428	p.D1476	0.000	superfamily_A-macroglobulin_rcpt-bd	pfam_A2M_comp,pfam_A2M_N_2,pfam_Macroglobln_a2,pfam_A-macroglobulin_rcpt-bd,pfam_A2M_N,pfam_MacrogloblnA2_thiol-ester-bond,pfam_SV_autoAg,superfamily_Terpenoid_cyclase/PrenylTrfase,superfamily_A-macroglobulin_rcpt-bd	-	no_errors	PZP	HGNC	ENSG00000126838				104	0	0	62	24	27.907
ARGLU1	0	genome.wustl.edu	37	13	107219984	107219984	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	13	107219984	107219984	A	G	SNP	ARGLU1	ENST00000400198	human	ensembl	74_37	-1	known	missense	c.284	p.L95P	1.000	NULL	NULL	-	no_errors	ARGLU1	HGNC	ENSG00000134884				118	0	0	103	39	27.4648
MYO16	0	genome.wustl.edu	37	13	109475609	109475609	+	Silent	SNP	C	C	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	13	109475609	109475609	C	T	SNP	MYO16	ENST00000356711	human	ensembl	74_37	+1	known	silent	c.1014	p.P338	0.000	NULL	pfam_Myosin_head_motor_dom,pfam_Ankyrin_rpt,superfamily_P-loop_NTPase,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Myosin_head_motor_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO16	HGNC	ENSG00000041515				249	0	0	198	67	25.283
COL4A1	0	genome.wustl.edu	37	13	110838771	110838771	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	13	110838771	110838771	C	T	SNP	COL4A1	ENST00000375820	human	ensembl	74_37	-1	known	missense	c.1858	p.A620T	0.001	NULL	pfam_Collagen,pfam_Collagen_VI_NC,superfamily_C-type_lectin_fold,smart_Collagen_VI_NC	-	no_errors	COL4A1	HGNC	ENSG00000187498				316	1	0.315457	189	97	33.9161
F10	0	genome.wustl.edu	37	13	113783899	113783899	+	Silent	SNP	C	C	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	13	113783899	113783899	C	T	SNP	F10	ENST00000375559	human	ensembl	74_37	+1	known	silent	c.204	p.R68	0.075	pirsf_Pept_S1A_FX,pfam_GLA_domain,superfamily_GLA_domain,smart_GLA_domain,prints_GLA_domain,pfscan_GLA_domain	pirsf_Pept_S1A_FX,pfam_Peptidase_S1,pfam_GLA_domain,pfam_EG-like_dom,superfamily_Trypsin-like_Pept_dom,superfamily_GLA_domain,smart_GLA_domain,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_Peptidase_S1,prints_Peptidase_S1A,prints_GLA_domain,pfscan_EG-like_dom,pfscan_GLA_domain,pfscan_Peptidase_S1	-	no_errors	F10	HGNC	ENSG00000126218				147	0	0	97	42	30.2158
TMCO3	0	genome.wustl.edu	37	13	114188557	114188557	+	Splice_Site	SNP	T	T	C			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	13	114188557	114188557	T	C	SNP	TMCO3	ENST00000434316	human	ensembl	74_37	+1	known	splice_site	c.1539+2	e8+2	1.000	-	-	-	no_errors	TMCO3	HGNC	ENSG00000150403				118	0	0	83	46	35.6589
LNX2	0	genome.wustl.edu	37	13	28136741	28136741	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	13	28136741	28136741	G	A	SNP	LNX2	ENST00000316334	human	ensembl	74_37	-1	known	missense	c.1033	p.R345W	1.000	pfam_PDZ,superfamily_PDZ,pfscan_PDZ	pfam_PDZ,pfam_Znf_C3HC4_RING-type,superfamily_PDZ,superfamily_TRAF-like,smart_Znf_RING,smart_PDZ,pfscan_PDZ,pfscan_Znf_RING	-	no_errors	LNX2	HGNC	ENSG00000139517				152	0	0	113	56	33.1361
DNAJC15	0	genome.wustl.edu	37	13	43643080	43643080	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	13	43643080	43643080	C	T	SNP	DNAJC15	ENST00000379221	human	ensembl	74_37	+1	known	missense	c.175	p.R59W	1.000	NULL	pfam_DnaJ_domain,superfamily_DnaJ_domain,smart_DnaJ_domain,pfscan_DnaJ_domain	-	no_errors	DNAJC15	HGNC	ENSG00000120675				48	0	0	36	17	32.0755
COG3	0	genome.wustl.edu	37	13	46083903	46083903	+	Silent	SNP	G	G	A			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	13	46083903	46083903	G	A	SNP	COG3	ENST00000349995	human	ensembl	74_37	+1	known	silent	c.1671	p.T557	0.996	NULL	pfam_COG_su3,superfamily_Cullin_repeat-like_dom	-	no_errors	COG3	HGNC	ENSG00000136152				277	0	0	156	83	34.728
DHRS12	0	genome.wustl.edu	37	13	52351200	52351200	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	13	52351200	52351200	C	T	SNP	DHRS12	ENST00000444610	human	ensembl	74_37	-1	known	missense	c.506	p.R169Q	1.000	pfam_DH_sc/Rdtase_SDR,pfam_Epimerase_deHydtase,pfam_PKS_KR	pfam_DH_sc/Rdtase_SDR,pfam_Epimerase_deHydtase,pfam_PKS_KR,prints_Glc/ribitol_DH	-	no_errors	DHRS12	HGNC	ENSG00000102796				96	0	0	57	30	34.4828
DOCK9	0	genome.wustl.edu	37	13	99481946	99481946	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	13	99481946	99481946	T	C	SNP	DOCK9	ENST00000339416	human	ensembl	74_37	-1	known	missense	c.4634	p.Q1545R	1.000	NULL	pfam_DOCK_C,pfam_DOCK_C/D_N,pfam_Pleckstrin_homology,superfamily_ARM-type_fold,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	DOCK9	HGNC	ENSG00000088387				16	0	0	22	3	12
SNORD114-15	0	genome.wustl.edu	37	14	101439032	101439032	+	RNA	SNP	G	G	A			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	14	101439032	101439032	G	A	SNP	SNORD114-15	ENST00000364687	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SNORD114-15	HGNC	ENSG00000201557				191	0	0	109	44	28.7582
EDDM3A	0	genome.wustl.edu	37	14	21216035	21216035	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	14	21216035	21216035	C	T	SNP	EDDM3A	ENST00000326842	human	ensembl	74_37	+1	known	missense	c.296	p.A99V	0.003	superfamily_RNaseA_domain	superfamily_RNaseA_domain	-	no_errors	EDDM3A	HGNC	ENSG00000181562				73	0	0	46	15	24.5902
SLC25A21	0	genome.wustl.edu	37	14	37641501	37641501	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	14	37641501	37641501	C	T	SNP	SLC25A21	ENST00000331299	human	ensembl	74_37	-1	known	missense	c.55	p.A19T	1.000	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier,prints_Mit_carrier	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier,prints_Mit_carrier	-	no_errors	SLC25A21	HGNC	ENSG00000183032				13	0	0	9	3	25
LRR1	0	genome.wustl.edu	37	14	50074337	50074337	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	14	50074337	50074337	C	T	SNP	LRR1	ENST00000298288	human	ensembl	74_37	+1	known	nonsense	c.502	p.R168*	0.991	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRR1	HGNC	ENSG00000165501				116	0	0	60	20	25
TRIM9	0	genome.wustl.edu	37	14	51467459	51467459	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	14	51467459	51467459	G	A	SNP	TRIM9	ENST00000338969	human	ensembl	74_37	-1	known	missense	c.1394	p.T465M	0.365	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_SPRY_rcpt,pfam_Fibronectin_type3,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,superfamily_Znf_FYVE_PHD,smart_Znf_RING,smart_Znf_B-box,smart_Bbox_C,smart_Fibronectin_type3,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Fibronectin_type3,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM9	HGNC	ENSG00000100505				59	0	0	41	20	32.7869
DAAM1	0	genome.wustl.edu	37	14	59834294	59834294	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	14	59834294	59834294	C	T	SNP	DAAM1	ENST00000351081	human	ensembl	74_37	+1	known	missense	c.3004	p.R1002C	1.000	smart_FH2_Formin	pfam_FH2_Formin,pfam_FH3_dom,pfam_GTPase-bd,superfamily_ARM-type_fold,superfamily_tRNA-bd_arm,smart_FH2_Formin	-	no_errors	DAAM1	HGNC	ENSG00000100592				69	0	0	53	29	35.3659
SYNE2	0	genome.wustl.edu	37	14	64514742	64514742	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	14	64514742	64514742	T	C	SNP	SYNE2	ENST00000358025	human	ensembl	74_37	+1	known	missense	c.7246	p.S2416P	1.000	NULL	pfam_CH-domain,pfam_KASH,pfam_Spectrin_repeat,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE2	HGNC	ENSG00000054654				91	0	0	58	15	20.5479
SPTB	0	genome.wustl.edu	37	14	65253382	65253382	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	14	65253382	65253382	G	A	SNP	SPTB	ENST00000389722	human	ensembl	74_37	-1	known	nonsense	c.3301	p.Q1101*	0.981	pirsf_Spectrin_bsu,pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pirsf_Spectrin_bsu,pfam_Spectrin_repeat,pfam_CH-domain,pfam_CAMSAP_CH,pfam_Pleckstrin_homology,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Pleckstrin_homology,prints_PH_dom-spectrin-type,pfscan_CH-domain,pfscan_Pleckstrin_homology	-	no_errors	SPTB	HGNC	ENSG00000070182				90	0	0	56	20	26.3158
ZFYVE26	0	genome.wustl.edu	37	14	68234521	68234521	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	14	68234521	68234521	G	A	SNP	ZFYVE26	ENST00000347230	human	ensembl	74_37	-1	known	missense	c.5690	p.S1897L	0.005	NULL	pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,smart_Znf_FYVE,pfscan_Znf_FYVE-rel	-	no_errors	ZFYVE26	HGNC	ENSG00000072121				169	0	0	127	36	22.0859
ELMSAN1	0	genome.wustl.edu	37	14	74193673	74193673	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	14	74193673	74193673	C	T	SNP	ELMSAN1	ENST00000286523	human	ensembl	74_37	-1	known	missense	c.2165	p.R722Q	0.999	pfscan_ELM2_dom	pfam_ELM2_dom,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_ELM2_dom	-	no_errors	ELMSAN1	HGNC	ENSG00000156030				57	0	0	48	15	23.8095
GPATCH2L	0	genome.wustl.edu	37	14	76633039	76633039	+	Silent	SNP	T	T	C			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	14	76633039	76633039	T	C	SNP	GPATCH2L	ENST00000261530	human	ensembl	74_37	+1	known	silent	c.696	p.T232	0.132	NULL	NULL	-	no_errors	GPATCH2L	HGNC	ENSG00000089916				60	0	0	35	15	30
IRF2BPL	0	genome.wustl.edu	37	14	77492310	77492310	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	14	77492310	77492310	C	T	SNP	IRF2BPL	ENST00000238647	human	ensembl	74_37	-1	known	missense	c.1826	p.R609Q	1.000	pfam_Interferon_reg_fac2-bd1_2_Znf	pfam_Interferon_reg_fac2-bd1_2_Znf	-	no_errors	IRF2BPL	HGNC	ENSG00000119669				18	0	0	19	6	24
NOXRED1	0	genome.wustl.edu	37	14	77889102	77889102	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	14	77889102	77889102	A	G	SNP	NOXRED1	ENST00000380835	human	ensembl	74_37	-1	known	missense	c.131	p.F44S	1.000	NULL	NULL	-	no_errors	NOXRED1	HGNC	ENSG00000165555				298	0	0	207	98	32.1311
SPTLC2	0	genome.wustl.edu	37	14	78018519	78018519	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	14	78018519	78018519	G	A	SNP	SPTLC2	ENST00000216484	human	ensembl	74_37	-1	known	missense	c.1223	p.A408V	1.000	pfam_Aminotransferase_I/II,superfamily_PyrdxlP-dep_Trfase	pfam_Aminotransferase_I/II,superfamily_PyrdxlP-dep_Trfase	-	no_errors	SPTLC2	HGNC	ENSG00000100596				44	0	0	37	13	26
PTPN21	0	genome.wustl.edu	37	14	88938739	88938739	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	14	88938739	88938739	C	T	SNP	PTPN21	ENST00000328736	human	ensembl	74_37	-1	known	missense	c.2720	p.R907Q	1.000	smart_Tyr_Pase_rcpt/non-rcpt,pirsf_Tyr_Pase_non-rcpt_typ-14/21,pfscan_Tyr_Pase_rcpt/non-rcpt	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_FERM_central,pfam_FERM_N,pfam_FERM_PH-like_C,superfamily_FERM_central,smart_Band_41_domain,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pirsf_Tyr_Pase_non-rcpt_typ-14/21,pfscan_FERM_domain,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt,prints_Band_41_fam	-	no_errors	PTPN21	HGNC	ENSG00000070778				74	0	0	46	15	24.5902
TTC7B	0	genome.wustl.edu	37	14	91211166	91211166	+	Silent	SNP	G	G	A			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	14	91211166	91211166	G	A	SNP	TTC7B	ENST00000357056	human	ensembl	74_37	-1	known	silent	c.546	p.I182	0.889	NULL	pfam_TPR_2,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC7B	HGNC	ENSG00000165914				156	0	0	103	61	37.1951
BCL11B	0	genome.wustl.edu	37	14	99641482	99641482	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	14	99641482	99641482	C	T	SNP	BCL11B	ENST00000357195	human	ensembl	74_37	-1	known	missense	c.1691	p.R564H	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	BCL11B	HGNC	ENSG00000127152				23	0	0	13	7	35
SNORD115-21	0	genome.wustl.edu	37	15	25453235	25453235	+	RNA	SNP	G	G	A			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	15	25453235	25453235	G	A	SNP	SNORD115-21	ENST00000362963	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.003	-	-	-	no_errors	SNORD115-21	HGNC	ENSG00000199833				356	0	0	238	109	31.4121
JMJD7-PLA2G4B	0	genome.wustl.edu	37	15	42139856	42139856	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	15	42139856	42139856	G	A	SNP	JMJD7-PLA2G4B	ENST00000382448	human	ensembl	74_37	+1	known	missense	c.2837	p.R946Q	0.911	superfamily_Acyl_Trfase/lysoPLipase,smart_LysoPLipase_cat_dom,pfscan_LysoPLipase_cat_dom	pfam_LysoPLipase_cat_dom,pfam_C2_dom,superfamily_Acyl_Trfase/lysoPLipase,superfamily_C2_dom,smart_JmjC_dom,smart_C2_dom,smart_LysoPLipase_cat_dom,pfscan_JmjC_dom,pfscan_C2_dom,pfscan_LysoPLipase_cat_dom	-	no_errors	JMJD7-PLA2G4B	HGNC	ENSG00000168970				73	0	0	56	25	30.8642
SPTBN5	0	genome.wustl.edu	37	15	42170721	42170721	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	15	42170721	42170721	G	A	SNP	SPTBN5	ENST00000320955	human	ensembl	74_37	-1	known	missense	c.3289	p.R1097C	0.000	smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Pleckstrin_homology,pfscan_CH-domain,pfscan_Pleckstrin_homology	-	no_errors	SPTBN5	HGNC	ENSG00000137877				27	0	0	26	9	25.7143
DUOX1	0	genome.wustl.edu	37	15	45433228	45433228	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	15	45433228	45433228	C	T	SNP	DUOX1	ENST00000321429	human	ensembl	74_37	+1	known	missense	c.1525	p.R509W	0.951	pfam_Haem_peroxidase_animal,superfamily_Haem_peroxidase,pfscan_Haem_peroxidase_animal	pfam_Haem_peroxidase_animal,pfam_Fe_red_NAD-bd_6,pfam_FAD-bd_8,pfam_Fe3_Rdtase_TM_dom,pfam_EF_hand_dom,superfamily_Haem_peroxidase,superfamily_Riboflavin_synthase-like_b-brl,smart_EF_hand_dom,prints_Haem_peroxidase_animal_subgr,prints_Recoverin,pfscan_EF_hand_dom,pfscan_Haem_peroxidase_animal	-	no_errors	DUOX1	HGNC	ENSG00000137857				206	0	0	151	51	25.2475
ALDH1A2	0	genome.wustl.edu	37	15	58256130	58256130	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	15	58256130	58256130	G	A	SNP	ALDH1A2	ENST00000249750	human	ensembl	74_37	-1	known	missense	c.1039	p.R347C	1.000	pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH	pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH	-	no_errors	ALDH1A2	HGNC	ENSG00000128918				185	0	0	104	38	26.7606
CSNK1G1	0	genome.wustl.edu	37	15	64496717	64496717	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	15	64496717	64496717	G	A	SNP	CSNK1G1	ENST00000303052	human	ensembl	74_37	-1	known	missense	c.922	p.R308W	1.000	superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Casein_kinase-1_gamma_C,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	CSNK1G1	HGNC	ENSG00000169118				146	0	0	91	51	35.9155
NPTN	0	genome.wustl.edu	37	15	73879916	73879916	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	15	73879916	73879916	C	T	SNP	NPTN	ENST00000345330	human	ensembl	74_37	-1	known	missense	c.655	p.V219I	1.000	smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_MFS_dom_general_subst_transpt,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	NPTN	HGNC	ENSG00000156642				80	0	0	67	19	22.093
C15orf59	0	genome.wustl.edu	37	15	74043456	74043456	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	15	74043456	74043456	C	T	SNP	C15orf59	ENST00000379822	human	ensembl	74_37	-1	known	missense	c.16	p.A6T	0.095	NULL	superfamily_Polyketide_synth_docking	-	no_errors	C15orf59	HGNC	ENSG00000205363				62	0	0	49	25	33.7838
LMAN1L	0	genome.wustl.edu	37	15	75112400	75112400	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	15	75112400	75112400	T	C	SNP	LMAN1L	ENST00000309664	human	ensembl	74_37	+1	known	missense	c.734	p.L245P	1.000	pfam_Lectin_leg,superfamily_ConA-like_lec_gl_sf	pfam_Lectin_leg,superfamily_ConA-like_lec_gl_sf	-	no_errors	LMAN1L	HGNC	ENSG00000140506				175	0	0	134	55	29.1005
SCAMP5	0	genome.wustl.edu	37	15	75309055	75309055	+	Silent	SNP	C	C	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	15	75309055	75309055	C	T	SNP	SCAMP5	ENST00000562212	human	ensembl	74_37	+1	known	silent	c.258	p.Y86	1.000	pfam_SCAMP	pfam_SCAMP	-	no_errors	SCAMP5	HGNC	ENSG00000198794				124	0	0	69	37	34.9057
SH2D7	0	genome.wustl.edu	37	15	78393576	78393576	+	Silent	SNP	C	C	A			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	15	78393576	78393576	C	A	SNP	SH2D7	ENST00000409568	human	ensembl	74_37	+1	putative	silent	c.573	p.T191	0.116	NULL	NULL	-	no_errors	SH2D7	HGNC	ENSG00000183476				27	0	0	23	13	36.1111
KIAA1199	0	genome.wustl.edu	37	15	81176682	81176682	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	15	81176682	81176682	C	T	SNP	KIAA1199	ENST00000220244	human	ensembl	74_37	+1	known	missense	c.784	p.H262Y	0.983	NULL	pfam_G8_domain,superfamily_Pectin_lyase_fold/virulence	-	no_errors	KIAA1199	HGNC	ENSG00000103888				72	0	0	44	18	29.0323
AP3B2	0	genome.wustl.edu	37	15	83331474	83331474	+	Silent	SNP	G	G	A			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	15	83331474	83331474	G	A	SNP	AP3B2	ENST00000261722	human	ensembl	74_37	-1	known	silent	c.2748	p.G916	1.000	superfamily_Coatomer/clathrin_app_Ig-like,pirsf_AP3_beta	pfam_Clathrin/coatomer_adapt-like_N,superfamily_ARM-type_fold,superfamily_Coatomer/clathrin_app_Ig-like,pirsf_AP3_beta	-	no_errors	AP3B2	HGNC	ENSG00000103723				32	0	0	28	10	26.3158
ALPK3	0	genome.wustl.edu	37	15	85400935	85400935	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	15	85400935	85400935	G	A	SNP	ALPK3	ENST00000258888	human	ensembl	74_37	+1	known	missense	c.3572	p.G1191E	0.027	NULL	pfam_MHCK_EF2_kinase,pfam_Ig_I-set,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_MHCK_EF2_kinase,pfscan_MHCK_EF2_kinase,pfscan_Ig-like_dom	-	no_errors	ALPK3	HGNC	ENSG00000136383				103	0	0	65	44	40.367
TICRR	0	genome.wustl.edu	37	15	90168613	90168613	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	15	90168613	90168613	C	T	SNP	TICRR	ENST00000268138	human	ensembl	74_37	+1	known	missense	c.5072	p.A1691V	0.986	NULL	NULL	-	no_errors	TICRR	HGNC	ENSG00000140534				136	0	0	100	27	21.2598
ANPEP	0	genome.wustl.edu	37	15	90342507	90342507	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	15	90342507	90342507	C	T	SNP	ANPEP	ENST00000300060	human	ensembl	74_37	-1	known	missense	c.1993	p.A665T	0.477	NULL	pfam_Peptidase_M1_N,prints_Peptidase_M1_N	-	no_errors	ANPEP	HGNC	ENSG00000166825				71	0	0	50	16	24.2424
RHBDF1	0	genome.wustl.edu	37	16	115006	115006	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	16	115006	115006	T	C	SNP	RHBDF1	ENST00000262316	human	ensembl	74_37	-1	known	missense	c.8	p.E3G	1.000	NULL	pfam_Rhomboid_SP,pfam_Peptidase_S54_rhomboid_dom	-	no_errors	RHBDF1	HGNC	ENSG00000007384				88	0	0	78	28	26.4151
PTX4	0	genome.wustl.edu	37	16	1536245	1536245	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	16	1536245	1536245	C	T	SNP	PTX4	ENST00000447419	human	ensembl	74_37	-1	known	missense	c.1132	p.V378M	0.954	pfam_Pentaxin,pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Pentaxin,prints_Pentaxin	pfam_Pentaxin,pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Pentaxin,prints_Pentaxin	-	no_errors	PTX4	HGNC	ENSG00000251692				38	0	0	27	8	22.8571
MAPK8IP3	0	genome.wustl.edu	37	16	1818554	1818554	+	Silent	SNP	G	G	A			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	16	1818554	1818554	G	A	SNP	MAPK8IP3	ENST00000250894	human	ensembl	74_37	+1	known	silent	c.3816	p.S1272	0.000	NULL	pfam_JNK/Rab-associated_protein-1_N,superfamily_WD40_repeat_dom	-	no_errors	MAPK8IP3	HGNC	ENSG00000138834				13	0	0	3	8	72.7273
CLN3	0	genome.wustl.edu	37	16	28488902	28488902	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	16	28488902	28488902	G	T	SNP	CLN3	ENST00000359984	human	ensembl	74_37	-1	known	missense	c.1252	p.L418M	0.389	pfam_Battenin_disease_Cln3,superfamily_MFS_dom_general_subst_transpt,pirsf_Battenin_disease_Cln3_subgr,prints_Battenin_disease_Cln3	pfam_Battenin_disease_Cln3,superfamily_MFS_dom_general_subst_transpt,pirsf_Battenin_disease_Cln3_subgr,prints_Battenin_disease_Cln3	-	no_errors	CLN3	HGNC	ENSG00000188603				125	1	0.793651	86	31	26.4957
RABEP2	0	genome.wustl.edu	37	16	28917352	28917352	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	16	28917352	28917352	G	A	SNP	RABEP2	ENST00000358201	human	ensembl	74_37	-1	known	missense	c.1411	p.R471W	1.000	pfam_Rabaptin_Rab5-bd_dom	pfam_Rabaptin_coiled-coil,pfam_Rabaptin_Rab5-bd_dom,prints_Rabaptin	-	no_errors	RABEP2	HGNC	ENSG00000177548				14	0	0	6	6	50
SEZ6L2	0	genome.wustl.edu	37	16	29888645	29888645	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	16	29888645	29888645	G	A	SNP	SEZ6L2	ENST00000308713	human	ensembl	74_37	-1	known	missense	c.1856	p.P619L	0.975	superfamily_CUB_dom,smart_CUB_dom,pfscan_CUB_dom	pfam_Sushi_SCR_CCP,pfam_CUB_dom,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_CUB_dom,smart_Sushi_SCR_CCP,pfscan_CUB_dom,pfscan_Sushi_SCR_CCP	-	no_errors	SEZ6L2	HGNC	ENSG00000174938				48	0	0	28	13	31.7073
CLDN9	0	genome.wustl.edu	37	16	3063873	3063873	+	Silent	SNP	G	G	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	16	3063873	3063873	G	T	SNP	CLDN9	ENST00000445369	human	ensembl	74_37	+1	known	silent	c.510	p.A170	0.000	pfam_PMP22/EMP/MP20/Claudin,prints_Claudin	pfam_PMP22/EMP/MP20/Claudin,prints_Claudin,prints_Claudin9	-	no_errors	CLDN9	HGNC	ENSG00000213937				68	0	0	50	30	37.5
SRCAP	0	genome.wustl.edu	37	16	30723591	30723591	+	Silent	SNP	G	G	A			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	16	30723591	30723591	G	A	SNP	SRCAP	ENST00000262518	human	ensembl	74_37	+1	known	silent	c.1824	p.T608	0.026	superfamily_P-loop_NTPase	pfam_SNF2_N,pfam_Helicase/SANT-assoc_DNA-bd,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_HAS_subgr,smart_Helicase_ATP-bd,smart_Helicase_C,smart_AT_hook_DNA-bd_motif,pfscan_Helicase/SANT-assoc_DNA-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,prints_AT_hook-like	-	no_errors	SRCAP	HGNC	ENSG00000080603				180	0	0	130	36	21.6867
SETD1A	0	genome.wustl.edu	37	16	30982823	30982823	+	Silent	SNP	C	C	G			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	16	30982823	30982823	C	G	SNP	SETD1A	ENST00000262519	human	ensembl	74_37	+1	known	silent	c.3141	p.S1047	0.001	NULL	pfam_COMPASS_Set1_N-SET,pfam_SET_dom,pfam_RRM_dom,smart_RRM_dom,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_RRM_dom	-	no_errors	SETD1A	HGNC	ENSG00000099381				118	0	0	82	39	32.2314
ADCY9	0	genome.wustl.edu	37	16	4016487	4016487	+	Silent	SNP	C	C	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	16	4016487	4016487	C	T	SNP	ADCY9	ENST00000294016	human	ensembl	74_37	-1	known	silent	c.3351	p.A1117	0.026	pfam_A/G_cyclase,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	pfam_A/G_cyclase,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY9	HGNC	ENSG00000162104				101	0	0	78	26	25
ABCC11	0	genome.wustl.edu	37	16	48234332	48234332	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	16	48234332	48234332	C	T	SNP	ABCC11	ENST00000356608	human	ensembl	74_37	-1	known	missense	c.1937	p.R646H	0.657	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,superfamily_ABC1_TM_dom,smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_P-loop_NTPase,superfamily_ABC1_TM_dom,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom	-	no_errors	ABCC11	HGNC	ENSG00000121270				61	0	0	43	15	25.8621
N4BP1	0	genome.wustl.edu	37	16	48577044	48577044	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	16	48577044	48577044	C	T	SNP	N4BP1	ENST00000262384	human	ensembl	74_37	-1	known	missense	c.2462	p.S821N	0.005	NULL	pfam_RNase_Zc3h12	-	no_errors	N4BP1	HGNC	ENSG00000102921				36	0	0	15	9	37.5
RBL2	0	genome.wustl.edu	37	16	53488589	53488589	+	Silent	SNP	T	T	C			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	16	53488589	53488589	T	C	SNP	RBL2	ENST00000262133	human	ensembl	74_37	+1	known	silent	c.1014	p.Y338	0.999	NULL	pfam_RB_A,pfam_RB_B,pfam_RB_N,superfamily_Cyclin-like,smart_Cyclin-like	-	no_errors	RBL2	HGNC	ENSG00000103479				108	0	0	102	32	23.8806
MT1JP	0	genome.wustl.edu	37	16	56670917	56670917	+	RNA	SNP	T	T	A			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	16	56670917	56670917	T	A	SNP	MT1JP	ENST00000563395	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	MT1JP	HGNC	ENSG00000255986				48	0	0	33	20	37.7358
CDH11	0	genome.wustl.edu	37	16	65006929	65006929	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	16	65006929	65006929	C	T	SNP	CDH11	ENST00000268603	human	ensembl	74_37	-1	known	missense	c.1268	p.R423H	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH11	HGNC	ENSG00000140937				72	0	0	60	32	34.7826
TERF2	0	genome.wustl.edu	37	16	69390851	69390851	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	16	69390851	69390851	C	T	SNP	TERF2	ENST00000254942	human	ensembl	74_37	-1	known	missense	c.1579	p.V527M	1.000	pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pirsf_Telomere_repeat-bd-1/2,pfscan_Myb-like_dom	pfam_Telomere_rpt-bd_fac_dimer_dom,pfam_SANT/Myb,superfamily_Telomere_rpt-bd_fac_dimer_dom,superfamily_Homeodomain-like,smart_SANT/Myb,pirsf_Telomere_repeat-bd-1/2,pfscan_Myb-like_dom	-	no_errors	TERF2	HGNC	ENSG00000132604				226	1	0.440529	142	63	30.7317
MTSS1L	0	genome.wustl.edu	37	16	70708346	70708346	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	16	70708346	70708346	G	A	SNP	MTSS1L	ENST00000338779	human	ensembl	74_37	-1	known	missense	c.916	p.R306C	1.000	NULL	pfam_IRSp53/MIM_homology_IMD	-	no_errors	MTSS1L	HGNC	ENSG00000132613				50	0	0	36	12	25
PSMD7	0	genome.wustl.edu	37	16	74339301	74339301	+	Silent	SNP	C	C	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	16	74339301	74339301	C	T	SNP	PSMD7	ENST00000219313	human	ensembl	74_37	+1	known	silent	c.645	p.V215	0.998	NULL	pfam_JAB_MPN_dom,smart_JAB_MPN_dom	-	no_errors	PSMD7	HGNC	ENSG00000103035				61	0	0	41	19	31.6667
METRN	0	genome.wustl.edu	37	16	767234	767234	+	Silent	SNP	C	C	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	16	767234	767234	C	T	SNP	METRN	ENST00000568223	human	ensembl	74_37	+1	known	silent	c.729	p.G243	0.952	NULL	NULL	-	no_errors	METRN	HGNC	ENSG00000103260				16	0	0	4	4	50
CDH15	0	genome.wustl.edu	37	16	89258129	89258129	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	16	89258129	89258129	C	A	SNP	CDH15	ENST00000289746	human	ensembl	74_37	+1	known	missense	c.1442	p.P481H	0.995	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH15	HGNC	ENSG00000129910				31	0	0	17	4	19.0476
SPG7	0	genome.wustl.edu	37	16	89592837	89592837	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	16	89592837	89592837	G	T	SNP	SPG7	ENST00000268704	human	ensembl	74_37	+1	known	missense	c.719	p.R240M	1.000	NULL	pfam_Peptidase_M41,pfam_ATPase_AAA_core,pfam_Pept_M41_FtsH_extracell,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase,tigrfam_FtsH	-	no_errors	SPG7	HGNC	ENSG00000197912				171	0	0	142	42	22.8261
DBNDD1	0	genome.wustl.edu	37	16	90075763	90075763	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	16	90075763	90075763	G	A	SNP	DBNDD1	ENST00000568838	human	ensembl	74_37	-1	known	missense	c.467	p.T156M	0.001	pfam_Dysbindin	pfam_Dysbindin	-	no_errors	DBNDD1	HGNC	ENSG00000003249				199	0	0	124	63	33.6898
DNAH9	0	genome.wustl.edu	37	17	11520904	11520904	+	Silent	SNP	C	C	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	17	11520904	11520904	C	T	SNP	DNAH9	ENST00000262442	human	ensembl	74_37	+1	known	silent	c.1081	p.L361	1.000	pfam_Dynein_heavy_dom-1	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH9	HGNC	ENSG00000007174				107	0	0	61	21	25.6098
PMP22	0	genome.wustl.edu	37	17	15134393	15134393	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	17	15134393	15134393	C	T	SNP	PMP22	ENST00000494511	human	ensembl	74_37	-1	novel	missense	c.145	p.V49M	0.993	NULL	NULL	-	no_errors	PMP22	HGNC	ENSG00000109099				61	0	0	43	21	32.8125
TVP23C	0	genome.wustl.edu	37	17	15441469	15441469	+	Splice_Site	SNP	C	C	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	17	15441469	15441469	C	T	SNP	TVP23C	ENST00000523573	human	ensembl	74_37	-1	known	splice_site	c.162-2	e5-2	0.998	-	-	-	no_errors	TVP23C	HGNC	ENSG00000175106				144	0	0	135	39	22.4138
MPRIP	0	genome.wustl.edu	37	17	17078646	17078646	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	17	17078646	17078646	C	T	SNP	MPRIP	ENST00000395811	human	ensembl	74_37	+1	known	missense	c.2629	p.R877W	1.000	NULL	pfam_Pleckstrin_homology,superfamily_Ferritin-like_SF,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	MPRIP	HGNC	ENSG00000133030				72	0	0	42	15	26.3158
SLC5A10	0	genome.wustl.edu	37	17	18923663	18923663	+	Silent	SNP	C	C	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	17	18923663	18923663	C	T	SNP	SLC5A10	ENST00000395647	human	ensembl	74_37	+1	known	silent	c.1758	p.H586	0.000	NULL	pfam_Na/solute_symporter,pfscan_Na/solute_symporter,tigrfam_Na/solute_symporter_subgr	-	no_errors	SLC5A10	HGNC	ENSG00000154025				220	0	0	179	59	24.7899
METTL16	0	genome.wustl.edu	37	17	2318761	2318761	+	RNA	SNP	A	A	G			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	17	2318761	2318761	A	G	SNP	METTL16	ENST00000571332	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	METTL16	HGNC	ENSG00000127804				36	0	0	31	13	29.5455
NLK	0	genome.wustl.edu	37	17	26449711	26449711	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	17	26449711	26449711	A	G	SNP	NLK	ENST00000407008	human	ensembl	74_37	+1	known	missense	c.541	p.R181G	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	NLK	HGNC	ENSG00000087095				150	0	0	96	37	27.8195
FOXN1	0	genome.wustl.edu	37	17	26854350	26854350	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	17	26854350	26854350	T	C	SNP	FOXN1	ENST00000226247	human	ensembl	74_37	+1	known	missense	c.670	p.Y224H	1.000	NULL	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXN1	HGNC	ENSG00000109101				41	0	0	29	8	21.6216
OR3A2	0	genome.wustl.edu	37	17	3181654	3181654	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	17	3181654	3181654	C	A	SNP	OR3A2	ENST00000408891	human	ensembl	74_37	-1	known	missense	c.576	p.Q192H	0.473	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR3A2	HGNC	ENSG00000221882				124	0	0	67	29	30.2083
TMEM132E	0	genome.wustl.edu	37	17	32964419	32964419	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	17	32964419	32964419	G	A	SNP	TMEM132E	ENST00000321639	human	ensembl	74_37	+1	known	missense	c.2123	p.R708H	1.000	NULL	NULL	-	no_errors	TMEM132E	HGNC	ENSG00000181291				113	0	0	83	35	29.661
HMGB1P24	0	genome.wustl.edu	37	17	35501167	35501167	+	RNA	SNP	C	C	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	17	35501167	35501167	C	T	SNP	HMGB1P24	ENST00000531465	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.998	-	-	-	no_errors	HMGB1P24	HGNC	ENSG00000254982				172	0	0	113	38	25.1656
FBXO47	0	genome.wustl.edu	37	17	37099048	37099048	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	17	37099048	37099048	C	T	SNP	FBXO47	ENST00000378079	human	ensembl	74_37	-1	known	missense	c.1066	p.V356I	0.133	NULL	pfam_F-box_dom,superfamily_F-box_dom,pfscan_F-box_dom	-	no_errors	FBXO47	HGNC	ENSG00000204952				125	0	0	86	30	25.8621
WNK4	0	genome.wustl.edu	37	17	40940150	40940150	+	Silent	SNP	T	T	C			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	17	40940150	40940150	T	C	SNP	WNK4	ENST00000246914	human	ensembl	74_37	+1	known	silent	c.1866	p.A622	0.973	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Kinase_OSR1/WNK_CCT,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	WNK4	HGNC	ENSG00000126562				523	0	0	333	137	29.1489
BECN1	0	genome.wustl.edu	37	17	40970864	40970864	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	17	40970864	40970864	T	G	SNP	BECN1	ENST00000361523	human	ensembl	74_37	-1	known	missense	c.292	p.T98P	1.000	NULL	pfam_Beclin_fam,superfamily_Translin	-	no_errors	BECN1	HGNC	ENSG00000126581				78	0	0	49	21	30
AOC2	0	genome.wustl.edu	37	17	40997723	40997723	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	17	40997723	40997723	G	T	SNP	AOC2	ENST00000253799	human	ensembl	74_37	+1	known	missense	c.1080	p.Q360H	0.998	pfam_Cu_amine_oxidase_C,superfamily_Cu_amine_oxidase_C,prints_Cu_amine_oxidase	pfam_Cu_amine_oxidase_C,pfam_Cu_amine_oxidase_N3,pfam_Cu_amine_oxidase_N2,superfamily_Cu_amine_oxidase_C,superfamily_Cu_amine_oxidase_N-reg,prints_Cu_amine_oxidase	-	no_errors	AOC2	HGNC	ENSG00000131480				253	0	0	165	45	21.4286
ARL4D	0	genome.wustl.edu	37	17	41477611	41477611	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	17	41477611	41477611	G	C	SNP	ARL4D	ENST00000320033	human	ensembl	74_37	+1	known	missense	c.511	p.V171L	0.908	pfam_Small_GTPase_ARF/SAR,pfam_Small_GTPase,pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,smart_Small_GTPase_ARF,smart_Small_GTPase_SAR1,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type	pfam_Small_GTPase_ARF/SAR,pfam_Small_GTPase,pfam_MIRO-like,pfam_SRP_receptor_beta_su,pfam_EF_GTP-bd_dom,pfam_Gtr1_RagA,superfamily_P-loop_NTPase,smart_Small_GTPase_ARF,smart_Small_GTPase_SAR1,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,prints_Small_GTPase_ARF/SAR,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	ARL4D	HGNC	ENSG00000175906				14	0	0	9	9	50
DHX8	0	genome.wustl.edu	37	17	41568548	41568548	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	17	41568548	41568548	C	A	SNP	DHX8	ENST00000262415	human	ensembl	74_37	+1	known	missense	c.323	p.P108H	1.000	NULL	pfam_Helicase-assoc_dom,pfam_DUF1605,pfam_Rbsml_prot_S1_RNA-bd_dom,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,superfamily_NA-bd_OB-fold,smart_RNA-binding_domain_S1,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_Rbsml_prot_S1_RNA-bd_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DHX8	HGNC	ENSG00000067596				86	0	0	58	22	27.5
GPATCH8	0	genome.wustl.edu	37	17	42475142	42475142	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	17	42475142	42475142	C	T	SNP	GPATCH8	ENST00000591680	human	ensembl	74_37	-1	known	missense	c.4303	p.A1435T	0.994	NULL	pfam_G_patch_dom,pfam_Znf_C2H2_jaz,smart_G_patch_dom,pfscan_Znf_C2H2,pfscan_G_patch_dom	-	no_errors	GPATCH8	HGNC	ENSG00000186566				17	0	0	18	6	25
FMNL1	0	genome.wustl.edu	37	17	43314678	43314678	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	17	43314678	43314678	G	A	SNP	FMNL1	ENST00000328118	human	ensembl	74_37	+1	known	missense	c.754	p.A252T	1.000	pfam_GTPase-bd,superfamily_ARM-type_fold	pfam_FH2_Formin,pfam_FH3_dom,pfam_GTPase-bd,superfamily_ARM-type_fold,smart_FH2_Formin	-	no_errors	FMNL1	HGNC	ENSG00000184922				62	0	0	51	35	40.6977
FAM117A	0	genome.wustl.edu	37	17	47799955	47799955	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	17	47799955	47799955	G	A	SNP	FAM117A	ENST00000240364	human	ensembl	74_37	-1	known	missense	c.368	p.T123M	1.000	NULL	NULL	-	no_errors	FAM117A	HGNC	ENSG00000121104				37	0	0	32	6	15.7895
MINK1	0	genome.wustl.edu	37	17	4796057	4796057	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	17	4796057	4796057	G	A	SNP	MINK1	ENST00000355280	human	ensembl	74_37	+1	known	missense	c.2305	p.V769M	0.993	NULL	pfam_Prot_kinase_dom,pfam_Citron,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Citron,pfscan_Prot_kinase_dom	-	no_errors	MINK1	HGNC	ENSG00000141503				27	0	0	17	11	39.2857
ACSF2	0	genome.wustl.edu	37	17	48539865	48539865	+	Silent	SNP	C	C	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	17	48539865	48539865	C	T	SNP	ACSF2	ENST00000300441	human	ensembl	74_37	+1	known	silent	c.711	p.S237	0.001	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig	-	no_errors	ACSF2	HGNC	ENSG00000167107				84	0	0	56	15	21.1268
BZRAP1	0	genome.wustl.edu	37	17	56389796	56389796	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	17	56389796	56389796	G	A	SNP	BZRAP1	ENST00000355701	human	ensembl	74_37	-1	known	missense	c.2386	p.R796C	0.049	superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_SH3_2,superfamily_SH3_domain,superfamily_Fibronectin_type3,smart_SH3_domain,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_SH3_domain	-	no_errors	BZRAP1	HGNC	ENSG00000005379				35	0	0	30	14	31.8182
HSF5	0	genome.wustl.edu	37	17	56565282	56565282	+	Silent	SNP	G	G	A			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	17	56565282	56565282	G	A	SNP	HSF5	ENST00000323777	human	ensembl	74_37	-1	known	silent	c.354	p.R118	0.939	pfam_HSF_DNA-bd,smart_HSF_DNA-bd	pfam_HSF_DNA-bd,smart_HSF_DNA-bd	-	no_errors	HSF5	HGNC	ENSG00000176160				42	0	0	22	5	18.5185
ENSG00000263887	0	genome.wustl.edu	37	17	60366066	60366066	+	RNA	SNP	T	T	C			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	17	60366066	60366066	T	C	SNP	ENSG00000263887	ENST00000602493	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	RP11-51L5.5	Clone_based_vega_gene	ENSG00000263887				77	0	0	60	13	17.8082
MIR633	0	genome.wustl.edu	37	17	61021590	61021590	+	RNA	SNP	T	T	A			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	17	61021590	61021590	T	A	SNP	MIR633	ENST00000384821	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	MIR633	HGNC	ENSG00000207552				33	0	0	26	8	23.5294
PITPNM3	0	genome.wustl.edu	37	17	6367557	6367557	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	17	6367557	6367557	T	C	SNP	PITPNM3	ENST00000262483	human	ensembl	74_37	-1	known	missense	c.2089	p.I697V	0.909	NULL	pfam_DDHD,pfam_LNS2,superfamily_HAD-like_dom,smart_LNS2,pfscan_DDHD	-	no_errors	PITPNM3	HGNC	ENSG00000091622				145	1	0.684932	88	35	28.4553
PITPNM3	0	genome.wustl.edu	37	17	6381912	6381912	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	17	6381912	6381912	G	T	SNP	PITPNM3	ENST00000262483	human	ensembl	74_37	-1	known	nonsense	c.732	p.Y244*	0.952	NULL	pfam_DDHD,pfam_LNS2,superfamily_HAD-like_dom,smart_LNS2,pfscan_DDHD	-	no_errors	PITPNM3	HGNC	ENSG00000091622				48	0	0	39	23	37.0968
SDK2	0	genome.wustl.edu	37	17	71394205	71394205	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	17	71394205	71394205	G	A	SNP	SDK2	ENST00000392650	human	ensembl	74_37	-1	known	missense	c.3323	p.A1108V	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	SDK2	HGNC	ENSG00000069188				39	0	0	28	7	20
NLGN2	0	genome.wustl.edu	37	17	7320661	7320661	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	17	7320661	7320661	C	T	SNP	NLGN2	ENST00000302926	human	ensembl	74_37	+1	known	missense	c.2051	p.A684V	1.000	prints_Neuroligin	pfam_CarbesteraseB,pfam_AB_hydrolase_3,prints_Neuroligin	-	no_errors	NLGN2	HGNC	ENSG00000169992				29	0	0	26	17	39.5349
CASKIN2	0	genome.wustl.edu	37	17	73498994	73498994	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	17	73498994	73498994	C	T	SNP	CASKIN2	ENST00000321617	human	ensembl	74_37	-1	known	missense	c.2161	p.G721S	0.001	NULL	pfam_Ankyrin_rpt,pfam_SAM_type1,pfam_SAM_2,pfam_SH3_2,superfamily_Ankyrin_rpt-contain_dom,superfamily_SAM/pointed,superfamily_SH3_domain,smart_Ankyrin_rpt,smart_SH3_domain,smart_SAM,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SAM,pfscan_SH3_domain,prints_Ankyrin_rpt	-	no_errors	CASKIN2	HGNC	ENSG00000177303				53	0	0	38	21	35.5932
ZBTB4	0	genome.wustl.edu	37	17	7366997	7366997	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	17	7366997	7366997	G	A	SNP	ZBTB4	ENST00000311403	human	ensembl	74_37	-1	known	missense	c.1304	p.P435L	0.988	NULL	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB4	HGNC	ENSG00000174282				200	0	0	134	38	22.093
TP53	0	genome.wustl.edu	37	17	7578263	7578263	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	17	7578263	7578263	G	A	SNP	TP53	ENST00000269305	human	ensembl	74_37	-1	known	nonsense	c.586	p.R196*	1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510				68	0	0	45	16	26.2295
DNAH2	0	genome.wustl.edu	37	17	7674152	7674152	+	Silent	SNP	C	C	A			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	17	7674152	7674152	C	A	SNP	DNAH2	ENST00000389173	human	ensembl	74_37	+1	known	silent	c.4263	p.A1421	1.000	pfam_Dynein_heavy_dom-2	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA_core,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH2	HGNC	ENSG00000183914				228	0	0	156	77	33.0472
LSMD1	0	genome.wustl.edu	37	17	7760123	7760123	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	17	7760123	7760123	C	T	SNP	LSMD1	ENST00000333775	human	ensembl	74_37	-1	known	missense	c.448	p.A150T	1.000	pfam_Ribonucl_LSM,superfamily_LSM_dom,smart_Ribonucl_LSM_euk/arc	pfam_Ribonucl_LSM,superfamily_LSM_dom,smart_Ribonucl_LSM_euk/arc	-	no_errors	LSMD1	HGNC	ENSG00000183011				166	0	0	124	41	24.8485
RNF213	0	genome.wustl.edu	37	17	78286879	78286879	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	17	78286879	78286879	C	T	SNP	RNF213	ENST00000582970	human	ensembl	74_37	+1	known	missense	c.2723	p.A908V	0.000	NULL	superfamily_P-loop_NTPase,smart_AAA+_ATPase,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF213	HGNC	ENSG00000173821				117	0	0	77	41	34.7458
TBCD	0	genome.wustl.edu	37	17	80714084	80714084	+	Silent	SNP	G	G	A			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	17	80714084	80714084	G	A	SNP	TBCD	ENST00000355528	human	ensembl	74_37	+1	known	silent	c.228	p.P76	0.796	superfamily_ARM-type_fold	pfam_Tubulin_specific_chaperoneD_C,superfamily_ARM-type_fold	-	no_errors	TBCD	HGNC	ENSG00000141556				23	0	0	10	7	41.1765
USP14	0	genome.wustl.edu	37	18	211160	211160	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	18	211160	211160	A	C	SNP	USP14	ENST00000261601	human	ensembl	74_37	+1	known	missense	c.1361	p.K454T	1.000	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	pfam_Peptidase_C19/C67,smart_Ubiquitin_dom,pfscan_Peptidase_C19/C67,pfscan_Ubiquitin_supergroup	-	no_errors	USP14	HGNC	ENSG00000101557				73	0	0	51	21	29.1667
GAREM	0	genome.wustl.edu	37	18	29867460	29867460	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	18	29867460	29867460	T	C	SNP	GAREM	ENST00000269209	human	ensembl	74_37	-1	known	missense	c.1100	p.H367R	0.998	NULL	superfamily_SAM/pointed	-	no_errors	GAREM	HGNC	ENSG00000141441				120	0	0	68	37	35.2381
SETBP1	0	genome.wustl.edu	37	18	42531918	42531918	+	Silent	SNP	T	T	C			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	18	42531918	42531918	T	C	SNP	SETBP1	ENST00000282030	human	ensembl	74_37	+1	known	silent	c.2613	p.I871	0.042	NULL	smart_AT_hook_DNA-bd_motif	-	no_errors	SETBP1	HGNC	ENSG00000152217				52	0	0	35	17	32.6923
CTIF	0	genome.wustl.edu	37	18	46385731	46385731	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	18	46385731	46385731	G	A	SNP	CTIF	ENST00000382998	human	ensembl	74_37	+1	known	missense	c.1604	p.R535Q	1.000	pfam_MIF4G-like_typ-3,superfamily_ARM-type_fold,smart_MIF4G-like_typ-3	pfam_MIF4G-like_typ-3,superfamily_ARM-type_fold,smart_MIF4G-like_typ-3	-	no_errors	CTIF	HGNC	ENSG00000134030				163	0	0	123	60	32.7869
DCC	0	genome.wustl.edu	37	18	50278508	50278508	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	18	50278508	50278508	T	C	SNP	DCC	ENST00000442544	human	ensembl	74_37	+1	known	missense	c.176	p.L59P	0.993	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Neogenin_C,pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	DCC	HGNC	ENSG00000187323				72	0	0	52	29	35.8025
ZNF407	0	genome.wustl.edu	37	18	72776341	72776341	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	18	72776341	72776341	G	A	SNP	ZNF407	ENST00000299687	human	ensembl	74_37	+1	known	missense	c.6664	p.V2222M	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,smart_Znf_U1,pfscan_Znf_C2H2	-	no_errors	ZNF407	HGNC	ENSG00000215421				9	0	0	10	7	41.1765
ZNF236	0	genome.wustl.edu	37	18	74649233	74649233	+	Silent	SNP	G	G	A			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	18	74649233	74649233	G	A	SNP	ZNF236	ENST00000253159	human	ensembl	74_37	+1	known	silent	c.4710	p.T1570	0.998	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF236	HGNC	ENSG00000130856				51	0	0	35	10	22.2222
TXNDC2	0	genome.wustl.edu	37	18	9886137	9886137	+	RNA	SNP	G	G	A			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	18	9886137	9886137	G	A	SNP	TXNDC2	ENST00000426718	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	TXNDC2	HGNC	ENSG00000168454				24	0	0	17	11	39.2857
PDE4A	0	genome.wustl.edu	37	19	10559819	10559819	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	19	10559819	10559819	A	G	SNP	PDE4A	ENST00000352831	human	ensembl	74_37	+1	known	missense	c.613	p.S205G	0.997	NULL	pfam_PDEase_catalytic_dom,smart_HD/PDEase_dom,prints_PDEase	-	no_errors	PDE4A	HGNC	ENSG00000065989				26	0	0	23	2	8
TNPO2	0	genome.wustl.edu	37	19	12821569	12821569	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	19	12821569	12821569	G	A	SNP	TNPO2	ENST00000425528	human	ensembl	74_37	-1	known	missense	c.1136	p.A379V	0.991	superfamily_ARM-type_fold	pfam_HEAT,pfam_Importin-beta_N,superfamily_ARM-type_fold,smart_Importin-beta_N	-	no_errors	TNPO2	HGNC	ENSG00000105576				26	0	0	19	7	26.9231
EMR3	0	genome.wustl.edu	37	19	14736376	14736376	+	Silent	SNP	G	G	A			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	19	14736376	14736376	G	A	SNP	EMR3	ENST00000253673	human	ensembl	74_37	-1	known	silent	c.1848	p.I616	0.000	NULL	pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_GPS_dom,pfscan_EG-like_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_EMR1_rcpt,prints_GPCR_2_secretin-like,prints_GPCR_2_CD97	-	no_errors	EMR3	HGNC	ENSG00000131355				243	0	0	165	64	27.9476
CYP4F2	0	genome.wustl.edu	37	19	15989624	15989624	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	19	15989624	15989624	C	T	SNP	CYP4F2	ENST00000221700	human	ensembl	74_37	-1	known	missense	c.1520	p.R507H	0.992	superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450,prints_Cyt_P450_E_grp-II	-	no_errors	CYP4F2	HGNC	ENSG00000186115				64	0	0	33	11	25
CPAMD8	0	genome.wustl.edu	37	19	17015120	17015120	+	Silent	SNP	C	C	G			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	19	17015120	17015120	C	G	SNP	CPAMD8	ENST00000443236	human	ensembl	74_37	-1	known	silent	c.4308	p.L1436	0.997	pfam_A2M_comp,superfamily_Terpenoid_cyclase/PrenylTrfase	pfam_A2M_comp,pfam_A2M_N_2,pfam_Methyltransf_FA,pfam_Macroglobln_a2,pfam_A-macroglobulin_rcpt-bd,pfam_A2M_N,pfam_MacrogloblnA2_thiol-ester-bond,pfam_Kazal_dom,superfamily_Terpenoid_cyclase/PrenylTrfase,superfamily_A-macroglobulin_rcpt-bd,smart_Kazal_dom	-	no_errors	CPAMD8	HGNC	ENSG00000160111				74	0	0	68	16	19.0476
CPAMD8	0	genome.wustl.edu	37	19	17015121	17015121	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	19	17015121	17015121	A	C	SNP	CPAMD8	ENST00000443236	human	ensembl	74_37	-1	known	missense	c.4307	p.L1436R	0.998	pfam_A2M_comp,superfamily_Terpenoid_cyclase/PrenylTrfase	pfam_A2M_comp,pfam_A2M_N_2,pfam_Methyltransf_FA,pfam_Macroglobln_a2,pfam_A-macroglobulin_rcpt-bd,pfam_A2M_N,pfam_MacrogloblnA2_thiol-ester-bond,pfam_Kazal_dom,superfamily_Terpenoid_cyclase/PrenylTrfase,superfamily_A-macroglobulin_rcpt-bd,smart_Kazal_dom	-	no_errors	CPAMD8	HGNC	ENSG00000160111				76	0	0	72	16	18.1818
NCAN	0	genome.wustl.edu	37	19	19338902	19338902	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	19	19338902	19338902	A	G	SNP	NCAN	ENST00000252575	human	ensembl	74_37	+1	known	missense	c.2473	p.T825A	0.000	NULL	pfam_Link,pfam_C-type_lectin,pfam_Sushi_SCR_CCP,pfam_Ig_V-set,superfamily_C-type_lectin_fold,superfamily_Sushi_SCR_CCP,smart_Ig_sub,smart_Link,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_C-type_lectin,smart_Sushi_SCR_CCP,pfscan_EG-like_dom,pfscan_C-type_lectin,pfscan_Link,pfscan_Sushi_SCR_CCP,pfscan_Ig-like_dom,prints_Link,prints_AntifreezeII	-	no_errors	NCAN	HGNC	ENSG00000130287				98	0	0	65	35	35
LMNB2	0	genome.wustl.edu	37	19	2435142	2435142	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	19	2435142	2435142	C	T	SNP	LMNB2	ENST00000325327	human	ensembl	74_37	-1	known	missense	c.712	p.E238K	1.000	pfam_IF	pfam_IF,pfam_Lamin_tail_dom,superfamily_Prefoldin	-	no_errors	LMNB2	HGNC	ENSG00000176619				55	0	0	33	15	31.25
WTIP	0	genome.wustl.edu	37	19	34991049	34991049	+	Silent	SNP	C	C	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	19	34991049	34991049	C	T	SNP	WTIP	ENST00000270288	human	ensembl	74_37	+1	known	silent	c.1840	p.L614	1.000	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	WTIP	HGNC	ENSG00000142279				36	0	0	23	17	42.5
MAG	0	genome.wustl.edu	37	19	35793406	35793406	+	Silent	SNP	G	G	A			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	19	35793406	35793406	G	A	SNP	MAG	ENST00000392213	human	ensembl	74_37	+1	known	silent	c.1026	p.T342	0.001	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_CD80_C2-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	MAG	HGNC	ENSG00000105695				84	0	0	47	29	38.1579
TMEM147	0	genome.wustl.edu	37	19	36038232	36038232	+	Silent	SNP	C	C	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	19	36038232	36038232	C	T	SNP	TMEM147	ENST00000222284	human	ensembl	74_37	+1	known	silent	c.558	p.F186	0.982	NULL	pfam_DUF2053_membrane	-	no_errors	TMEM147	HGNC	ENSG00000105677				116	0	0	101	44	30.3448
WDR62	0	genome.wustl.edu	37	19	36558338	36558338	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	19	36558338	36558338	A	G	SNP	WDR62	ENST00000401500	human	ensembl	74_37	+1	known	missense	c.692	p.E231G	0.685	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR62	HGNC	ENSG00000075702				137	0	0	85	36	29.7521
WDR62	0	genome.wustl.edu	37	19	36595830	36595830	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	19	36595830	36595830	C	T	SNP	WDR62	ENST00000401500	human	ensembl	74_37	+1	known	missense	c.4472	p.P1491L	0.783	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR62	HGNC	ENSG00000075702				31	0	0	20	8	28.5714
ZNF571	0	genome.wustl.edu	37	19	38055639	38055639	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	19	38055639	38055639	C	A	SNP	ZNF571	ENST00000328550	human	ensembl	74_37	-1	known	missense	c.1691	p.G564V	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF571	HGNC	ENSG00000180479				109	1	0.909091	82	27	24.7706
SARS2	0	genome.wustl.edu	37	19	39410406	39410406	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	19	39410406	39410406	C	T	SNP	SARS2	ENST00000600042	human	ensembl	74_37	-1	known	missense	c.761	p.R254H	0.005	pirsf_Ser-tRNA-ligase_type_1,pfam_aa-tRNA-synt_IIb_cons-dom,pfscan_aa-tRNA-synth_II,tigrfam_Ser-tRNA-ligase_type_1	pirsf_Ser-tRNA-ligase_type_1,pfam_aa-tRNA-synt_IIb_cons-dom,superfamily_tRNA-bd_arm,prints_Ser-tRNA-ligase_type_1,pfscan_aa-tRNA-synth_II,tigrfam_Ser-tRNA-ligase_type_1	-	no_errors	SARS2	HGNC	ENSG00000104835				74	0	0	45	26	36.6197
NCCRP1	0	genome.wustl.edu	37	19	39691287	39691287	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	19	39691287	39691287	G	A	SNP	NCCRP1	ENST00000339852	human	ensembl	74_37	+1	known	missense	c.719	p.G240D	0.952	pfam_F-box-assoc_dom,superfamily_Galactose-bd-like,pfscan_F-box-assoc_dom	pfam_F-box-assoc_dom,superfamily_Galactose-bd-like,pfscan_F-box-assoc_dom	-	no_errors	NCCRP1	HGNC	ENSG00000188505				487	0	0	272	141	34.1404
IFNL3	0	genome.wustl.edu	37	19	39734754	39734754	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	19	39734754	39734754	G	A	SNP	IFNL3	ENST00000413851	human	ensembl	74_37	-1	known	missense	c.302	p.T101M	0.583	NULL	NULL	-	no_errors	IFNL3	HGNC	ENSG00000197110				79	0	0	47	22	31.8841
FCGBP	0	genome.wustl.edu	37	19	40382380	40382380	+	Silent	SNP	G	G	A			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	19	40382380	40382380	G	A	SNP	FCGBP	ENST00000221347	human	ensembl	74_37	-1	known	silent	c.10506	p.G3502	0.988	pfam_Unchr_dom_Cys-rich,smart_Unchr_dom_Cys-rich	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,smart_Fol_N,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_EG-like_dom,smart_VWF_C,smart_VWC_out	-	no_errors	FCGBP	HGNC	ENSG00000090920				28	0	0	28	5	15.1515
SPTBN4	0	genome.wustl.edu	37	19	40996063	40996063	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	19	40996063	40996063	G	A	SNP	SPTBN4	ENST00000352632	human	ensembl	74_37	+1	known	missense	c.403	p.V135M	1.000	pirsf_Spectrin_bsu,pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	pirsf_Spectrin_bsu,pfam_Spectrin_repeat,pfam_CH-domain,pfam_Pleckstrin_homology,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Pleckstrin_homology,prints_PH_dom-spectrin-type,pfscan_CH-domain,pfscan_Pleckstrin_homology	-	no_errors	SPTBN4	HGNC	ENSG00000160460				67	0	0	63	33	34.375
CIC	0	genome.wustl.edu	37	19	42795129	42795129	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	19	42795129	42795129	G	A	SNP	CIC	ENST00000575354	human	ensembl	74_37	+1	known	missense	c.2209	p.A737T	0.998	NULL	pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	-	no_errors	CIC	HGNC	ENSG00000079432				66	0	0	42	30	41.6667
ZNF285	0	genome.wustl.edu	37	19	44892073	44892073	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	19	44892073	44892073	C	T	SNP	ZNF285	ENST00000330997	human	ensembl	74_37	-1	known	missense	c.334	p.A112T	0.076	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF285	HGNC	ENSG00000267508				206	0	0	144	63	30.4348
IGFL3	0	genome.wustl.edu	37	19	46627291	46627291	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	19	46627291	46627291	G	A	SNP	IGFL3	ENST00000341415	human	ensembl	74_37	-1	known	missense	c.202	p.R68C	0.001	NULL	NULL	-	no_errors	IGFL3	HGNC	ENSG00000188624				277	0	0	242	14	5.46875
DPP9	0	genome.wustl.edu	37	19	4704312	4704312	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	19	4704312	4704312	G	A	SNP	DPP9	ENST00000262960	human	ensembl	74_37	-1	known	missense	c.431	p.T144M	1.000	NULL	pfam_Peptidase_S9B,pfam_Peptidase_S9,pfam_X-Pro-like_dom	-	no_errors	DPP9	HGNC	ENSG00000142002				128	0	0	70	38	35.1852
GLTSCR2	0	genome.wustl.edu	37	19	48254334	48254334	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	19	48254334	48254334	C	T	SNP	GLTSCR2	ENST00000246802	human	ensembl	74_37	+1	known	missense	c.568	p.R190W	0.981	pfam_P60-like,pirsf_Gltscr2	pfam_P60-like,pirsf_Gltscr2	-	no_errors	GLTSCR2	HGNC	ENSG00000105373				18	0	0	12	6	33.3333
UHRF1	0	genome.wustl.edu	37	19	4941597	4941597	+	RNA	SNP	G	G	A			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	19	4941597	4941597	G	A	SNP	UHRF1	ENST00000262952	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	UHRF1	HGNC	ENSG00000034063				24	0	0	28	6	17.6471
TRPM4	0	genome.wustl.edu	37	19	49685882	49685882	+	Silent	SNP	G	G	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	19	49685882	49685882	G	T	SNP	TRPM4	ENST00000252826	human	ensembl	74_37	+1	known	silent	c.1311	p.R437	0.997	NULL	pfam_Ion_trans_dom	-	no_errors	TRPM4	HGNC	ENSG00000130529				72	0	0	59	23	28.0488
SLC6A16	0	genome.wustl.edu	37	19	49794007	49794007	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	19	49794007	49794007	G	A	SNP	SLC6A16	ENST00000335875	human	ensembl	74_37	-1	known	missense	c.1796	p.T599M	0.000	pfam_Na/ntran_symport,pfscan_Na/ntran_symport	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport	-	no_errors	SLC6A16	HGNC	ENSG00000063127				28	0	0	21	12	36.3636
SCAF1	0	genome.wustl.edu	37	19	50156263	50156263	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	19	50156263	50156263	C	T	SNP	SCAF1	ENST00000360565	human	ensembl	74_37	+1	known	missense	c.2617	p.R873C	1.000	NULL	NULL	-	no_errors	SCAF1	HGNC	ENSG00000126461				41	0	0	23	13	36.1111
IL4I1	0	genome.wustl.edu	37	19	50393802	50393802	+	Silent	SNP	G	G	A			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	19	50393802	50393802	G	A	SNP	IL4I1	ENST00000341114	human	ensembl	74_37	-1	known	silent	c.895	p.L299	0.997	pfam_Amino_oxidase	pfam_Amino_oxidase,pfam_FAD-dep_OxRdtase,pfam_CHP00275_HI0933-like,pfam_FAD_bind_dom,pfam_Pyr_OxRdtase_NAD-bd_dom,pfam_AlaDH/PNT_NAD(H)-bd,pfam_mOase_FAD-bd,prints_Flavin_amine_oxidase	-	no_errors	IL4I1	HGNC	ENSG00000104951				24	0	0	17	4	19.0476
SIGLEC16	0	genome.wustl.edu	37	19	50473279	50473279	+	RNA	SNP	A	A	C			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	19	50473279	50473279	A	C	SNP	SIGLEC16	ENST00000602139	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SIGLEC16	HGNC	ENSG00000161643				34	0	0	27	12	30.7692
LRRC4B	0	genome.wustl.edu	37	19	51021562	51021562	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	19	51021562	51021562	C	T	SNP	LRRC4B	ENST00000389201	human	ensembl	74_37	-1	known	missense	c.1408	p.G470S	0.344	NULL	pfam_Leu-rich_rpt,pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	LRRC4B	HGNC	ENSG00000131409				22	0	0	12	12	50
SHANK1	0	genome.wustl.edu	37	19	51219975	51219975	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	19	51219975	51219975	C	T	SNP	SHANK1	ENST00000391814	human	ensembl	74_37	-1	known	missense	c.202	p.A68T	1.000	NULL	pfam_Ankyrin_rpt,pfam_SAM_type1,pfam_SH3_2,pfam_SAM_2,pfam_PDZ,pfam_SH3_domain,superfamily_Ankyrin_rpt-contain_dom,superfamily_PDZ,superfamily_SH3_domain,superfamily_SAM/pointed,smart_Ankyrin_rpt,smart_SH3_domain,smart_PDZ,smart_SAM,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_PDZ,pfscan_SAM,pfscan_SH3_domain	-	no_errors	SHANK1	HGNC	ENSG00000161681				113	0	0	71	32	31.068
KLK14	0	genome.wustl.edu	37	19	51582715	51582715	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	19	51582715	51582715	T	G	SNP	KLK14	ENST00000156499	human	ensembl	74_37	-1	known	missense	c.505	p.S169R	0.953	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	KLK14	HGNC	ENSG00000129437				32	0	0	22	5	18.5185
MIR525	0	genome.wustl.edu	37	19	54200863	54200863	+	RNA	SNP	C	C	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	19	54200863	54200863	C	T	SNP	MIR525	ENST00000384978	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.045	-	-	-	no_errors	MIR525	HGNC	ENSG00000207711				54	0	0	37	10	21.2766
LILRB5	0	genome.wustl.edu	37	19	54760565	54760565	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	19	54760565	54760565	A	C	SNP	LILRB5	ENST00000450632	human	ensembl	74_37	-1	known	missense	c.142	p.W48G	0.780	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	LILRB5	HGNC	ENSG00000105609				223	0	0	176	72	29.0323
ZNF582	0	genome.wustl.edu	37	19	56896019	56896019	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	19	56896019	56896019	T	G	SNP	ZNF582	ENST00000301310	human	ensembl	74_37	-1	known	missense	c.767	p.E256A	0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF582	HGNC	ENSG00000018869				91	0	0	40	28	41.1765
ZBTB45	0	genome.wustl.edu	37	19	59028872	59028872	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	19	59028872	59028872	A	T	SNP	ZBTB45	ENST00000354590	human	ensembl	74_37	-1	known	missense	c.169	p.F57I	1.000	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like	pfam_BTB_POZ,pfam_Znf_C2H2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB45	HGNC	ENSG00000119574				72	0	0	32	19	37.2549
HCN2	0	genome.wustl.edu	37	19	605189	605189	+	Silent	SNP	G	G	A			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	19	605189	605189	G	A	SNP	HCN2	ENST00000251287	human	ensembl	74_37	+1	known	silent	c.1185	p.P395	0.000	pfam_Ion_trans_dom	pfam_Ion_trans_N,pfam_cNMP-bd_dom,pfam_Ion_trans_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG/ELK/ERG	-	no_errors	HCN2	HGNC	ENSG00000099822				90	0	0	47	37	44.0476
XAB2	0	genome.wustl.edu	37	19	7690872	7690872	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	19	7690872	7690872	T	C	SNP	XAB2	ENST00000358368	human	ensembl	74_37	-1	known	missense	c.716	p.N239S	0.956	NULL	smart_HAT,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	XAB2	HGNC	ENSG00000076924				77	0	0	49	24	32.8767
PCP2	0	genome.wustl.edu	37	19	7697386	7697386	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	19	7697386	7697386	C	T	SNP	PCP2	ENST00000311069	human	ensembl	74_37	-1	known	missense	c.184	p.E62K	0.990	NULL	pfam_GoLoco_motif,smart_GoLoco_motif,pfscan_GoLoco_motif	-	no_errors	PCP2	HGNC	ENSG00000174788				152	0	0	113	41	26.6234
ELANE	0	genome.wustl.edu	37	19	852928	852928	+	Silent	SNP	G	G	A			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	19	852928	852928	G	A	SNP	ELANE	ENST00000263621	human	ensembl	74_37	+1	known	silent	c.120	p.A40	0.614	pfam_Peptidase_S1,pfam_Peptidase_S1A_nudel,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1	pfam_Peptidase_S1,pfam_Peptidase_S1A_nudel,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	ELANE	HGNC	ENSG00000197561				32	0	0	17	14	45.1613
OR7D4	0	genome.wustl.edu	37	19	9325158	9325158	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	19	9325158	9325158	G	A	SNP	OR7D4	ENST00000308682	human	ensembl	74_37	-1	known	missense	c.356	p.A119V	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR7D4	HGNC	ENSG00000174667				97	0	0	58	27	31.7647
GCC2	0	genome.wustl.edu	37	2	109116015	109116015	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	2	109116015	109116015	A	G	SNP	GCC2	ENST00000309863	human	ensembl	74_37	+1	known	missense	c.4789	p.K1597E	1.000	NULL	pfam_GRIP,superfamily_GRIP,superfamily_tRNA-bd_arm,smart_GRIP,pfscan_GRIP	-	no_errors	GCC2	HGNC	ENSG00000135968				69	0	0	68	15	18.0723
TMEM87B	0	genome.wustl.edu	37	2	112832491	112832491	+	Silent	SNP	T	T	C			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	2	112832491	112832491	T	C	SNP	TMEM87B	ENST00000283206	human	ensembl	74_37	+1	known	silent	c.453	p.N151	1.000	NULL	pfam_TM_rcpt_euk	-	no_errors	TMEM87B	HGNC	ENSG00000153214				41	0	0	17	9	34.6154
TMEM177	0	genome.wustl.edu	37	2	120438597	120438597	+	Silent	SNP	G	G	A			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	2	120438597	120438597	G	A	SNP	TMEM177	ENST00000272521	human	ensembl	74_37	+1	known	silent	c.168	p.P56	0.000	NULL	NULL	-	no_errors	TMEM177	HGNC	ENSG00000144120				294	0	0	236	101	29.9703
TUBA3D	0	genome.wustl.edu	37	2	132237023	132237023	+	Silent	SNP	C	C	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	2	132237023	132237023	C	T	SNP	TUBA3D	ENST00000321253	human	ensembl	74_37	+1	known	silent	c.369	p.R123	1.000	pfam_Tubulin_FtsZ_GTPase,superfamily_Tubulin_FtsZ_GTPase,smart_Tubulin_FtsZ_GTPase,prints_Alpha_tubulin,prints_Tubulin,prints_Beta_tubulin	pfam_Tubulin_FtsZ_GTPase,pfam_Tubulin/FtsZ_2-layer-sand-dom,superfamily_Tubulin_FtsZ_GTPase,superfamily_Tub_FtsZ_C,smart_Tubulin_FtsZ_GTPase,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Alpha_tubulin,prints_Tubulin,prints_Epsilon_tubulin,prints_Delta_tubulin,prints_Beta_tubulin	-	no_errors	TUBA3D	HGNC	ENSG00000075886				219	0	0	146	58	28.4314
LOC150776	0	genome.wustl.edu	37	2	132277231	132277231	+	RNA	SNP	C	C	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	2	132277231	132277231	C	T	SNP	LOC150776	ENST00000438378	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	AC093838.4	Clone_based_vega_gene	ENSG00000152117				50	0	0	36	4	10
MCM6	0	genome.wustl.edu	37	2	136602247	136602247	+	Silent	SNP	G	G	A			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	2	136602247	136602247	G	A	SNP	MCM6	ENST00000264156	human	ensembl	74_37	-1	known	silent	c.2217	p.D739	0.995	NULL	pfam_MCM_DNA-dep_ATPase,pfam_Mg_chelatse_chII,superfamily_NA-bd_OB-fold,superfamily_P-loop_NTPase,smart_MCM_DNA-dep_ATPase,pfscan_MCM_DNA-dep_ATPase,prints_MCM6,prints_MCM_DNA-dep_ATPase	-	no_errors	MCM6	HGNC	ENSG00000076003				164	0	0	120	43	26.3804
RIF1	0	genome.wustl.edu	37	2	152324577	152324577	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	2	152324577	152324577	C	T	SNP	RIF1	ENST00000243326	human	ensembl	74_37	+1	known	missense	c.6664	p.R2222W	0.965	NULL	pfam_Rif1_N,superfamily_ARM-type_fold	-	no_errors	RIF1	HGNC	ENSG00000080345				124	0	0	77	35	31.25
PLA2R1	0	genome.wustl.edu	37	2	160798419	160798419	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	2	160798419	160798419	T	C	SNP	PLA2R1	ENST00000283243	human	ensembl	74_37	-1	known	missense	c.4262	p.Y1421C	0.962	NULL	pfam_C-type_lectin,pfam_FN_type2_col-bd,superfamily_C-type_lectin_fold,superfamily_Ricin_B_lectin,superfamily_Kringle-like,smart_Ricin_B_lectin,smart_FN_type2_col-bd,smart_C-type_lectin,pfscan_FN_type2_col-bd,pfscan_C-type_lectin,pfscan_Ricin_B_lectin	-	no_errors	PLA2R1	HGNC	ENSG00000153246				95	0	0	53	22	29.3333
XIRP2	0	genome.wustl.edu	37	2	168100214	168100214	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	2	168100214	168100214	G	A	SNP	XIRP2	ENST00000295237	human	ensembl	74_37	+1	known	missense	c.2312	p.R771Q	1.000	pfam_Actin-binding_Xin_repeat	pfam_Actin-binding_Xin_repeat	-	no_errors	XIRP2	HGNC	ENSG00000163092				123	0	0	70	26	27.0833
LRP2	0	genome.wustl.edu	37	2	170059292	170059292	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	2	170059292	170059292	C	A	SNP	LRP2	ENST00000263816	human	ensembl	74_37	-1	known	missense	c.8183	p.G2728V	1.000	pfam_LDrepeatLR_classA_rpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,pfscan_LDrepeatLR_classA_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,superfamily_TIL_dom,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP2	HGNC	ENSG00000081479				164	0	0	139	9	6.08108
SMC6	0	genome.wustl.edu	37	2	17847726	17847726	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	2	17847726	17847726	C	T	SNP	SMC6	ENST00000381272	human	ensembl	74_37	-1	known	missense	c.3200	p.R1067H	0.774	superfamily_P-loop_NTPase	superfamily_P-loop_NTPase	-	no_errors	SMC6	HGNC	ENSG00000163029				49	0	0	29	5	14.7059
TTN	0	genome.wustl.edu	37	2	179395182	179395182	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	2	179395182	179395182	G	A	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.98456	p.S32819L	0.531	superfamily_RNaseH-like_dom,smart_Ig_sub	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				147	0	0	84	46	35.3846
TTN	0	genome.wustl.edu	37	2	179667001	179667001	+	Silent	SNP	G	G	A			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	2	179667001	179667001	G	A	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	silent	c.159	p.G53	1.000	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				88	0	0	57	19	25
SPATS2L	0	genome.wustl.edu	37	2	201284108	201284108	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	2	201284108	201284108	G	A	SNP	SPATS2L	ENST00000409755	human	ensembl	74_37	+1	known	missense	c.424	p.E142K	0.964	pfam_DUF1387	pfam_DUF1387,superfamily_UBA-like	-	no_errors	SPATS2L	HGNC	ENSG00000196141				25	0	0	26	6	18.75
CASP8	0	genome.wustl.edu	37	2	202131514	202131514	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	2	202131514	202131514	G	T	SNP	CASP8	ENST00000358485	human	ensembl	74_37	+1	known	missense	c.482	p.R161M	1.000	pfam_DED,superfamily_DEATH-like_dom,smart_DED,pfscan_DED	pfam_DED,pfam_Pept_C14_caspase,superfamily_DEATH-like_dom,smart_DED,smart_Pept_C14A_p45_core,pfscan_DED,pfscan_Pept_C14_p10,pfscan_Pept_C14_ICE_p20,prints_Pept_C14A_p45_core	-	no_errors	CASP8	HGNC	ENSG00000064012				45	0	0	45	19	29.6875
SDC1	0	genome.wustl.edu	37	2	20402399	20402399	+	RNA	SNP	G	G	A			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	2	20402399	20402399	G	A	SNP	SDC1	ENST00000482879	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SDC1	HGNC	ENSG00000115884				58	0	0	34	26	43.3333
C2orf43	0	genome.wustl.edu	37	2	20990057	20990057	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	2	20990057	20990057	C	T	SNP	C2orf43	ENST00000237822	human	ensembl	74_37	-1	known	missense	c.256	p.A86T	0.000	pfam_DUF2305	pfam_DUF2305	-	no_errors	C2orf43	HGNC	ENSG00000118961				200	0	0	142	83	36.8889
C2orf43	0	genome.wustl.edu	37	2	21001136	21001136	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	2	21001136	21001136	G	A	SNP	C2orf43	ENST00000237822	human	ensembl	74_37	-1	known	missense	c.88	p.P30S	1.000	NULL	pfam_DUF2305	-	no_errors	C2orf43	HGNC	ENSG00000118961				126	0	0	106	43	28.8591
IHH	0	genome.wustl.edu	37	2	219920518	219920518	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	2	219920518	219920518	G	A	SNP	IHH	ENST00000295731	human	ensembl	74_37	-1	known	missense	c.647	p.A216V	0.136	pirsf_Hedgehog,pfam_Hint_dom,smart_Hint_dom_N,pfscan_Intein_splice_site	pirsf_Hedgehog,pfam_Hedgehog_signaling_dom,pfam_Hint_dom,superfamily_Hedgehog_sig/DD-Pept_Zn-bd_dom,smart_Hint_dom_N,smart_Hint_dom_C,prints_Hedgehog,pfscan_Intein_splice_site	-	no_errors	IHH	HGNC	ENSG00000163501				49	0	0	40	22	35.4839
SPEG	0	genome.wustl.edu	37	2	220344783	220344783	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	2	220344783	220344783	T	C	SNP	SPEG	ENST00000312358	human	ensembl	74_37	+1	novel	missense	c.5263	p.Y1755H	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_dom	pfam_Ig_I-set,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	SPEG	HGNC	ENSG00000072195				121	0	0	70	28	28.5714
OBSL1	0	genome.wustl.edu	37	2	220420875	220420875	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	2	220420875	220420875	G	A	SNP	OBSL1	ENST00000265318	human	ensembl	74_37	-1	known	missense	c.4076	p.T1359M	0.000	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	OBSL1	HGNC	ENSG00000124006				29	0	0	21	11	34.375
MOGAT1	0	genome.wustl.edu	37	2	223553100	223553100	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	2	223553100	223553100	A	G	SNP	MOGAT1	ENST00000446656	human	ensembl	74_37	+1	known	missense	c.132	p.I44M	0.000	pfam_DAGAT	pfam_DAGAT	-	no_errors	MOGAT1	HGNC	ENSG00000124003				30	0	0	14	4	22.2222
DNAJB3	0	genome.wustl.edu	37	2	234652578	234652578	+	RNA	SNP	C	C	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	2	234652578	234652578	C	T	SNP	DNAJB3	ENST00000449667	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	DNAJB3	HGNC	ENSG00000227802				30	0	0	26	13	33.3333
COL6A3	0	genome.wustl.edu	37	2	238242065	238242065	+	RNA	SNP	T	T	C			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	2	238242065	238242065	T	C	SNP	COL6A3	ENST00000493608	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	COL6A3	HGNC	ENSG00000163359				56	0	0	30	16	34.7826
ANO7	0	genome.wustl.edu	37	2	242129505	242129505	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	2	242129505	242129505	G	T	SNP	ANO7	ENST00000274979	human	ensembl	74_37	+1	known	missense	c.189	p.E63D	0.139	NULL	pfam_Anoctamin	-	no_errors	ANO7	HGNC	ENSG00000146205				9	0	0	9	6	40
KIF3C	0	genome.wustl.edu	37	2	26174773	26174773	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	2	26174773	26174773	A	G	SNP	KIF3C	ENST00000264712	human	ensembl	74_37	-1	known	missense	c.1891	p.Y631H	1.000	NULL	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF3C	HGNC	ENSG00000084731				134	0	0	82	56	40.5797
IFT172	0	genome.wustl.edu	37	2	27695182	27695182	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	2	27695182	27695182	G	A	SNP	IFT172	ENST00000260570	human	ensembl	74_37	-1	known	missense	c.1459	p.R487C	1.000	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat	-	no_errors	IFT172	HGNC	ENSG00000138002				108	0	0	66	22	25
GALNT14	0	genome.wustl.edu	37	2	31154985	31154985	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	2	31154985	31154985	C	T	SNP	GALNT14	ENST00000349752	human	ensembl	74_37	-1	known	missense	c.1007	p.R336Q	1.000	NULL	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	GALNT14	HGNC	ENSG00000158089				136	0	0	88	42	32.3077
RASGRP3	0	genome.wustl.edu	37	2	33783395	33783395	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	2	33783395	33783395	T	C	SNP	RASGRP3	ENST00000402538	human	ensembl	74_37	+1	known	missense	c.1697	p.L566P	0.998	NULL	pfam_RasGRF_CDC25,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_Ras_GEF_dom,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,smart_EF_hand_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,pfscan_EF_hand_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N,prints_DAG/PE-bd	-	no_errors	RASGRP3	HGNC	ENSG00000152689				47	0	0	28	9	24.3243
OXER1	0	genome.wustl.edu	37	2	42990108	42990108	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	2	42990108	42990108	T	C	SNP	OXER1	ENST00000378661	human	ensembl	74_37	-1	known	missense	c.1212	p.I404M	0.000	NULL	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	-	no_errors	OXER1	HGNC	ENSG00000162881				105	0	0	79	30	27.5229
GPR75	0	genome.wustl.edu	37	2	54081206	54081206	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	2	54081206	54081206	G	A	SNP	GPR75	ENST00000394705	human	ensembl	74_37	-1	known	missense	c.688	p.R230W	0.951	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	GPR75	HGNC	ENSG00000119737				110	0	0	76	35	31.5315
C2orf42	0	genome.wustl.edu	37	2	70392254	70392254	+	Silent	SNP	C	C	A			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	2	70392254	70392254	C	A	SNP	C2orf42	ENST00000264434	human	ensembl	74_37	-1	known	silent	c.1323	p.L441	1.000	NULL	NULL	-	no_errors	C2orf42	HGNC	ENSG00000115998				163	0	0	115	40	25.8065
C2orf42	0	genome.wustl.edu	37	2	70408792	70408792	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	2	70408792	70408792	T	C	SNP	C2orf42	ENST00000264434	human	ensembl	74_37	-1	known	missense	c.326	p.Q109R	1.000	NULL	NULL	-	no_errors	C2orf42	HGNC	ENSG00000115998				76	0	0	50	21	29.5775
DYSF	0	genome.wustl.edu	37	2	71766292	71766292	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	2	71766292	71766292	G	A	SNP	DYSF	ENST00000413539	human	ensembl	74_37	+1	known	missense	c.1496	p.R499H	1.000	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	pfam_C2_dom,pfam_Ferlin_B-domain,pfam_FerIin-domain,pfam_Ferlin_A-domain,superfamily_C2_dom,superfamily_MFS_dom_general_subst_transpt,smart_C2_dom,smart_Peroxin/Ferlin,pfscan_C2_dom	-	no_errors	DYSF	HGNC	ENSG00000135636				102	0	0	74	30	28.8462
KDM3A	0	genome.wustl.edu	37	2	86683981	86683981	+	Silent	SNP	C	C	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	2	86683981	86683981	C	T	SNP	KDM3A	ENST00000312912	human	ensembl	74_37	+1	known	silent	c.735	p.H245	0.999	NULL	pfam_JmjC_dom,smart_JmjC_dom,pfscan_JmjC_dom	-	no_errors	KDM3A	HGNC	ENSG00000115548				107	0	0	91	32	26.0163
ANKEF1	0	genome.wustl.edu	37	20	10033880	10033880	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	20	10033880	10033880	C	A	SNP	ANKEF1	ENST00000378380	human	ensembl	74_37	+1	known	missense	c.1991	p.P664H	0.004	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_EF_hand_dom,prints_Ankyrin_rpt	-	no_errors	ANKEF1	HGNC	ENSG00000132623				143	0	0	76	38	33.3333
ANKEF1	0	genome.wustl.edu	37	20	10036224	10036224	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	20	10036224	10036224	G	T	SNP	ANKEF1	ENST00000378380	human	ensembl	74_37	+1	known	missense	c.2247	p.E749D	0.997	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_EF_hand_dom,prints_Ankyrin_rpt	-	no_errors	ANKEF1	HGNC	ENSG00000132623				85	0	0	49	33	40.2439
ACTL10	0	genome.wustl.edu	37	20	32255583	32255583	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	20	32255583	32255583	G	A	SNP	ACTL10	ENST00000330271	human	ensembl	74_37	+1	putative	missense	c.280	p.D94N	0.979	pfam_Actin-related,smart_Actin-related	pfam_Actin-related,smart_Actin-related	-	no_errors	ACTL10	HGNC	ENSG00000182584				51	0	0	28	11	28.2051
DLGAP4	0	genome.wustl.edu	37	20	35060141	35060141	+	Silent	SNP	C	C	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	20	35060141	35060141	C	T	SNP	DLGAP4	ENST00000339266	human	ensembl	74_37	+1	known	silent	c.21	p.S7	1.000	NULL	pfam_GKAP	-	no_errors	DLGAP4	HGNC	ENSG00000080845				58	0	0	23	11	32.3529
ZNFX1	0	genome.wustl.edu	37	20	47865975	47865975	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	20	47865975	47865975	G	T	SNP	ZNFX1	ENST00000371752	human	ensembl	74_37	-1	known	missense	c.3586	p.L1196I	0.984	superfamily_P-loop_NTPase	superfamily_P-loop_NTPase,superfamily_ARM-type_fold,smart_Znf_NFX1	-	no_errors	ZNFX1	HGNC	ENSG00000124201				244	0	0	161	83	34.0164
PTGIS	0	genome.wustl.edu	37	20	48129730	48129730	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	20	48129730	48129730	G	T	SNP	PTGIS	ENST00000244043	human	ensembl	74_37	-1	known	missense	c.1093	p.L365M	0.565	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_E_grp-I	-	no_errors	PTGIS	HGNC	ENSG00000124212				114	0	0	88	32	26.6667
NFATC2	0	genome.wustl.edu	37	20	50139969	50139969	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	20	50139969	50139969	G	A	SNP	NFATC2	ENST00000396009	human	ensembl	74_37	-1	known	missense	c.811	p.R271C	1.000	NULL	pfam_RHD,pfam_IPT,superfamily_p53-like_TF_DNA-bd,superfamily_Ig_E-set,smart_IPT,pfscan_RHD,prints_NFAT	-	no_errors	NFATC2	HGNC	ENSG00000101096				38	0	0	21	13	38.2353
FAM217B	0	genome.wustl.edu	37	20	58519082	58519082	+	Silent	SNP	C	C	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	20	58519082	58519082	C	T	SNP	FAM217B	ENST00000358293	human	ensembl	74_37	+1	known	silent	c.84	p.H28	0.000	NULL	NULL	-	no_errors	FAM217B	HGNC	ENSG00000196227				100	1	0.990099	69	36	34.2857
SLCO4A1	0	genome.wustl.edu	37	20	61288207	61288207	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	20	61288207	61288207	G	A	SNP	SLCO4A1	ENST00000217159	human	ensembl	74_37	+1	known	missense	c.401	p.R134H	1.000	pfam_OA_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_OA_transporter	pfam_OA_transporter,pfam_MFS,pfam_Kazal_dom,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_OA_transporter	-	no_errors	SLCO4A1	HGNC	ENSG00000101187				83	0	0	56	4	6.66667
DIDO1	0	genome.wustl.edu	37	20	61541269	61541269	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	20	61541269	61541269	T	C	SNP	DIDO1	ENST00000266070	human	ensembl	74_37	-1	known	missense	c.943	p.I315V	1.000	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger	pfam_TFIIS_cen_dom,pfam_SPOC_C,pfam_Znf_PHD-finger,superfamily_TFIIS_cen_dom,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_TFS2M,pfscan_Znf_PHD-finger	-	no_errors	DIDO1	HGNC	ENSG00000101191				82	0	0	71	28	28.2828
MYT1	0	genome.wustl.edu	37	20	62839241	62839241	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	20	62839241	62839241	G	A	SNP	MYT1	ENST00000536311	human	ensembl	74_37	+1	known	missense	c.692	p.R231H	0.000	NULL	pfam_Myelin_TF,pfam_Znf_C2HC	-	no_errors	MYT1	HGNC	ENSG00000196132				50	0	0	28	15	34.8837
KRTAP26-1	0	genome.wustl.edu	37	21	31691822	31691822	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	21	31691822	31691822	C	T	SNP	KRTAP26-1	ENST00000360542	human	ensembl	74_37	-1	known	missense	c.532	p.V178I	0.000	pfam_KRTAP_PMG	pfam_KRTAP_PMG	-	no_errors	KRTAP26-1	HGNC	ENSG00000197683				392	0	0	141	96	40.5063
TIAM1	0	genome.wustl.edu	37	21	32617973	32617973	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	21	32617973	32617973	C	T	SNP	TIAM1	ENST00000286827	human	ensembl	74_37	-1	known	missense	c.1415	p.C472Y	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_DH-domain,pfam_Pleckstrin_homology,pfam_Raf-like_ras-bd,pfam_PDZ,superfamily_DH-domain,superfamily_PDZ,smart_Pleckstrin_homology,smart_Raf-like_ras-bd,smart_PDZ,smart_DH-domain,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_Raf-like_ras-bd,pfscan_DH-domain	-	no_errors	TIAM1	HGNC	ENSG00000156299				51	0	0	15	11	42.3077
RIPK4	0	genome.wustl.edu	37	21	43162041	43162041	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	21	43162041	43162041	C	T	SNP	RIPK4	ENST00000352483	human	ensembl	74_37	-1	known	missense	c.1456	p.G486S	0.001	pfam_Ankyrin_rpt,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Ankyrin_rpt-contain_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Prot_kinase_dom,prints_Ankyrin_rpt,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	RIPK4	HGNC	ENSG00000183421				281	0	0	85	64	42.953
PKNOX1	0	genome.wustl.edu	37	21	44437072	44437072	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	21	44437072	44437072	G	A	SNP	PKNOX1	ENST00000291547	human	ensembl	74_37	+1	known	missense	c.577	p.A193T	0.996	NULL	pfam_Homeobox_dom,pfam_Homeobox_KN_domain,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	-	no_errors	PKNOX1	HGNC	ENSG00000160199				79	0	0	25	20	44.4444
PWP2	0	genome.wustl.edu	37	21	45534462	45534462	+	RNA	SNP	A	A	G			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	21	45534462	45534462	A	G	SNP	PWP2	ENST00000486126	human	ensembl	74_37	+1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	PWP2	HGNC	ENSG00000241945				36	0	0	12	15	55.5556
CECR2	0	genome.wustl.edu	37	22	17983977	17983977	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	22	17983977	17983977	C	T	SNP	CECR2	ENST00000400573	human	ensembl	74_37	+1	novel	nonsense	c.733	p.R245*	0.839	NULL	pfam_Bromodomain,superfamily_Bromodomain,smart_Bromodomain,prints_Bromodomain,pfscan_Bromodomain	-	no_errors	CECR2	HGNC	ENSG00000099954				92	0	0	62	26	29.5455
CECR2	0	genome.wustl.edu	37	22	18021539	18021539	+	Silent	SNP	A	A	G			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	22	18021539	18021539	A	G	SNP	CECR2	ENST00000400573	human	ensembl	74_37	+1	novel	silent	c.1830	p.V610	0.327	NULL	pfam_Bromodomain,superfamily_Bromodomain,smart_Bromodomain,prints_Bromodomain,pfscan_Bromodomain	-	no_errors	CECR2	HGNC	ENSG00000099954				113	0	0	72	28	28
LOC101929372	0	genome.wustl.edu	37	22	18070848	18070848	+	RNA	SNP	A	A	G			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	22	18070848	18070848	A	G	SNP	LOC101929372	ENST00000443935	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.981	-	-	-	no_errors	AC004019.13	Clone_based_vega_gene	ENSG00000236754				92	0	0	57	24	29.6296
MICAL3	0	genome.wustl.edu	37	22	18355566	18355566	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	22	18355566	18355566	T	C	SNP	MICAL3	ENST00000429452	human	ensembl	74_37	-1	known	missense	c.2560	p.N854D	1.000	NULL	pfam_CH-domain,pfam_CAMSAP_CH,pfam_Znf_LIM,pfam_mOase_FAD-bd,superfamily_CH-domain,smart_CH-domain,smart_Znf_LIM,pfscan_CH-domain,pfscan_Znf_LIM,prints_Rng_hydrolase-like	-	no_errors	MICAL3	HGNC	ENSG00000243156				88	0	0	52	24	31.5789
SPECC1L	0	genome.wustl.edu	37	22	24717989	24717989	+	Silent	SNP	T	T	C			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	22	24717989	24717989	T	C	SNP	SPECC1L	ENST00000314328	human	ensembl	74_37	+1	known	silent	c.1041	p.S347	0.945	NULL	pfam_CH-domain,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_bHLH_dom,smart_CH-domain,pfscan_CH-domain	-	no_errors	SPECC1L	HGNC	ENSG00000100014				98	0	0	89	23	20.5357
L3MBTL2	0	genome.wustl.edu	37	22	41620769	41620769	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	22	41620769	41620769	G	T	SNP	L3MBTL2	ENST00000216237	human	ensembl	74_37	+1	known	missense	c.1215	p.K405N	0.996	smart_Mbt,pfscan_Mbt	pfam_Mbt,smart_Mbt,pfscan_Mbt,pfscan_Znf_FCS	-	no_errors	L3MBTL2	HGNC	ENSG00000100395				76	0	0	54	18	25
SBF1	0	genome.wustl.edu	37	22	50906280	50906280	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	22	50906280	50906280	C	T	SNP	SBF1	ENST00000380817	human	ensembl	74_37	-1	known	missense	c.214	p.D72N	1.000	pfam_uDENN_dom,smart_uDENN_dom,pfscan_uDENN_dom	pfam_SBF2,pfam_DENN_dom,pfam_uDENN_dom,pfam_Myotubularin-like_Pase_dom,pfam_dDENN_dom,pfam_GRAM,pfam_Pleckstrin_homology,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,smart_GRAM,smart_Pleckstrin_homology,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom,pfscan_Pleckstrin_homology	-	no_errors	SBF1	HGNC	ENSG00000100241				57	0	0	19	11	36.6667
NFKBIZ	0	genome.wustl.edu	37	3	101574616	101574616	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	3	101574616	101574616	C	A	SNP	NFKBIZ	ENST00000326172	human	ensembl	74_37	+1	known	missense	c.1694	p.A565D	1.000	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	NFKBIZ	HGNC	ENSG00000144802				105	0	0	101	6	5.60748
TATDN2	0	genome.wustl.edu	37	3	10312453	10312453	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	3	10312453	10312453	A	T	SNP	TATDN2	ENST00000287652	human	ensembl	74_37	+1	known	missense	c.1587	p.E529D	0.887	pfam_TatD_family	pfam_TatD_family	-	no_errors	TATDN2	HGNC	ENSG00000157014				209	1	0.47619	191	67	25.969
GHRL	0	genome.wustl.edu	37	3	10328491	10328491	+	Silent	SNP	G	G	A			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	3	10328491	10328491	G	A	SNP	GHRL	ENST00000335542	human	ensembl	74_37	-1	known	silent	c.231	p.N77	0.530	pfam_Motilin_assoc,prints_Preproghrelin	pfam_Motilin_assoc,pfam_Motilin_ghrelin,prints_Preproghrelin	-	no_errors	GHRL	HGNC	ENSG00000157017				32	0	0	33	14	29.7872
ATP2B2	0	genome.wustl.edu	37	3	10442673	10442673	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	3	10442673	10442673	G	A	SNP	ATP2B2	ENST00000352432	human	ensembl	74_37	-1	known	missense	c.745	p.R249C	1.000	pfam_ATPase_P-typ_transduc_dom_A,prints_Cation_transp_P_typ_ATPase,tigrfam_Cation_transp_P_typ_ATPase	pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_cation-transptr_C,pfam_ATP_Ca_trans_C,pfam_HAD-like_dom,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_P-typ_cyto_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Ca-transp_plasma,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP2B2	HGNC	ENSG00000157087				110	0	0	87	37	29.8387
GUCA1C	0	genome.wustl.edu	37	3	108634981	108634981	+	Silent	SNP	G	G	A			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	3	108634981	108634981	G	A	SNP	GUCA1C	ENST00000261047	human	ensembl	74_37	-1	known	silent	c.435	p.N145	0.488	smart_EF_hand_dom,pfscan_EF_hand_dom	pfam_EF_hand_dom,smart_EF_hand_dom,pfscan_EF_hand_dom,prints_Recoverin	-	no_errors	GUCA1C	HGNC	ENSG00000138472				143	0	0	96	52	35.1351
TMPRSS7	0	genome.wustl.edu	37	3	111766802	111766802	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	3	111766802	111766802	G	A	SNP	TMPRSS7	ENST00000419127	human	ensembl	74_37	+1	known	missense	c.569	p.S190N	0.472	pfam_CUB_dom,superfamily_CUB_dom,smart_CUB_dom,pfscan_CUB_dom	pfam_Peptidase_S1,pfam_SEA_dom,pfam_LDrepeatLR_classA_rpt,pfam_CUB_dom,superfamily_Trypsin-like_Pept_dom,superfamily_CUB_dom,superfamily_LDrepeatLR_classA_rpt,smart_CUB_dom,smart_LDrepeatLR_classA_rpt,smart_Peptidase_S1,pfscan_CUB_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_Peptidase_S1,prints_Peptidase_S1A,prints_LDrepeatLR_classA_rpt	-	no_errors	TMPRSS7	HGNC	ENSG00000176040				114	0	0	72	36	33.3333
CASR	0	genome.wustl.edu	37	3	121981056	121981056	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	3	121981056	121981056	C	T	SNP	CASR	ENST00000498619	human	ensembl	74_37	+1	known	nonsense	c.1174	p.R392*	1.000	pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_GPCR_3_9-Cys_dom,superfamily_Peripla_BP_I,superfamily_Growth_fac_rcpt_N_dom,pfscan_GPCR_3_C,prints_GPCR_3	-	no_errors	CASR	HGNC	ENSG00000036828				107	0	0	69	27	28.125
HEG1	0	genome.wustl.edu	37	3	124732092	124732092	+	Silent	SNP	G	G	A			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	3	124732092	124732092	G	A	SNP	HEG1	ENST00000311127	human	ensembl	74_37	-1	known	silent	c.2331	p.D777	0.041	NULL	pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom	-	no_errors	HEG1	HGNC	ENSG00000173706				332	0	0	194	83	29.9639
RAF1	0	genome.wustl.edu	37	3	12645699	12645699	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	3	12645699	12645699	G	A	SNP	RAF1	ENST00000442415	human	ensembl	74_37	-1	known	missense	c.770	p.S257L	1.000	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Raf-like_ras-bd,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_Kinase-like_dom,smart_Raf-like_ras-bd,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Raf-like_ras-bd,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_DAG/PE-bd	-	no_errors	RAF1	HGNC	ENSG00000132155				137	0	0	150	42	21.875
KY	0	genome.wustl.edu	37	3	134348463	134348463	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	3	134348463	134348463	G	A	SNP	KY	ENST00000423778	human	ensembl	74_37	-1	known	missense	c.337	p.R113C	0.867	NULL	pfam_Transglutaminase-like,smart_Transglutaminase-like	-	no_errors	KY	HGNC	ENSG00000174611				17	0	0	9	4	30.7692
EPHB1	0	genome.wustl.edu	37	3	134960059	134960059	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	3	134960059	134960059	G	A	SNP	EPHB1	ENST00000398015	human	ensembl	74_37	+1	known	missense	c.2416	p.D806N	1.000	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt_N_dom,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_dom	-	no_errors	EPHB1	HGNC	ENSG00000154928				352	0	0	232	102	30.5389
FBLN2	0	genome.wustl.edu	37	3	13679190	13679190	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	3	13679190	13679190	C	T	SNP	FBLN2	ENST00000404922	human	ensembl	74_37	+1	known	missense	c.3467	p.A1156V	0.996	NULL	pfam_EGF-like_Ca-bd_dom,pfam_Anaphylatoxin/fibulin,superfamily_Anaphylatoxin_comp_syst,smart_EG-like_dom,smart_Anaphylatoxin/fibulin,smart_EGF-like_Ca-bd_dom,pfscan_Anaphylatoxin/fibulin,pfscan_EG-like_dom	-	no_errors	FBLN2	HGNC	ENSG00000163520				31	0	0	25	19	43.1818
PLSCR5	0	genome.wustl.edu	37	3	146307501	146307501	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	3	146307501	146307501	T	C	SNP	PLSCR5	ENST00000443512	human	ensembl	74_37	-1	known	missense	c.716	p.H239R	1.000	pfam_Scramblase,superfamily_Tubby_C-like	pfam_Scramblase,superfamily_Tubby_C-like	-	no_errors	PLSCR5	HGNC	ENSG00000231213				159	0	0	89	34	27.6423
ZIC1	0	genome.wustl.edu	37	3	147128660	147128660	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	3	147128660	147128660	C	T	SNP	ZIC1	ENST00000282928	human	ensembl	74_37	+1	known	missense	c.761	p.T254M	1.000	smart_Znf_C2H2-like	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZIC1	HGNC	ENSG00000152977				132	0	0	79	29	26.8519
MED12L	0	genome.wustl.edu	37	3	151093846	151093846	+	Silent	SNP	T	T	C			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	3	151093846	151093846	T	C	SNP	MED12L	ENST00000474524	human	ensembl	74_37	+1	known	silent	c.3792	p.P1264	0.925	NULL	pfam_Mediator_Med12_LCEWAV,pfam_Mediator_Med12,pfam_Mediator_Med12_catenin-bd	-	no_errors	MED12L	HGNC	ENSG00000144893				125	0	0	84	33	28.2051
PLCH1	0	genome.wustl.edu	37	3	155206450	155206450	+	Silent	SNP	A	A	G			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	3	155206450	155206450	A	G	SNP	PLCH1	ENST00000340059	human	ensembl	74_37	-1	known	silent	c.2502	p.P834	0.992	superfamily_C2_dom,smart_C2_dom,prints_Pinositol_PLipase_C	pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,pfam_C2_dom,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_dom,smart_Pleckstrin_homology,smart_EF_hand_dom,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_dom,pfscan_EF_hand_dom,pfscan_C2_dom,pfscan_Pleckstrin_homology,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y,prints_Pinositol_PLipase_C	-	no_errors	PLCH1	HGNC	ENSG00000114805				62	0	0	63	13	17.1053
IGF2BP2	0	genome.wustl.edu	37	3	185407313	185407313	+	Silent	SNP	G	G	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	3	185407313	185407313	G	T	SNP	IGF2BP2	ENST00000382199	human	ensembl	74_37	-1	known	silent	c.507	p.A169	0.997	NULL	pfam_KH_dom_type_1,pfam_RRM_dom,smart_RRM_dom,smart_KH_dom,pfscan_KH_dom_type_1,pfscan_RRM_dom	-	no_errors	IGF2BP2	HGNC	ENSG00000073792				143	0	0	155	10	6.06061
LEPREL1	0	genome.wustl.edu	37	3	189713205	189713205	+	Silent	SNP	T	T	C			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	3	189713205	189713205	T	C	SNP	LEPREL1	ENST00000319332	human	ensembl	74_37	-1	known	silent	c.507	p.E169	1.000	NULL	pfam_Oxoglu/Fe-dep_dioxygenase,smart_Pro_4_hyd_alph	-	no_errors	LEPREL1	HGNC	ENSG00000090530				79	0	0	65	33	33.6735
ATP13A5	0	genome.wustl.edu	37	3	192992817	192992817	+	RNA	SNP	G	G	A			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	3	192992817	192992817	G	A	SNP	ATP13A5	ENST00000495496	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ATP13A5	HGNC	ENSG00000187527				319	0	0	232	86	27.044
OXSM	0	genome.wustl.edu	37	3	25835771	25835771	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	3	25835771	25835771	C	T	SNP	OXSM	ENST00000280701	human	ensembl	74_37	+1	known	missense	c.1166	p.A389V	1.000	pfam_Ketoacyl_synth_C,superfamily_Thiolase-like,smart_PKS_Beta-ketoAc_synthase_dom,tigrfam_3-oxoacyl-ACP_synth-2	pfam_Ketoacyl_synth_N,pfam_Ketoacyl_synth_C,pfam_Thiolase_N,superfamily_Thiolase-like,smart_PKS_Beta-ketoAc_synthase_dom,tigrfam_3-oxoacyl-ACP_synth-2	-	no_errors	OXSM	HGNC	ENSG00000151093				162	0	0	147	52	26.1307
SCN11A	0	genome.wustl.edu	37	3	38936341	38936341	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	3	38936341	38936341	G	A	SNP	SCN11A	ENST00000302328	human	ensembl	74_37	-1	known	missense	c.2518	p.R840C	0.009	pfam_Na_trans_assoc	pfam_Ion_trans_dom,pfam_Na_trans_assoc,prints_Na_channel_asu	-	no_errors	SCN11A	HGNC	ENSG00000168356				124	0	0	41	30	42.2535
ITPR1	0	genome.wustl.edu	37	3	4706906	4706906	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	3	4706906	4706906	G	A	SNP	ITPR1	ENST00000302640	human	ensembl	74_37	+1	known	missense	c.1594	p.A532T	1.000	pfam_Ca-rel_channel	pfam_Ca-rel_channel,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,smart_MIR_motif,prints_InsP3_rcpt-bd,pfscan_MIR_motif	-	no_errors	ITPR1	HGNC	ENSG00000150995				140	0	0	98	7	6.66667
DAG1	0	genome.wustl.edu	37	3	49568877	49568877	+	Silent	SNP	G	G	A			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	3	49568877	49568877	G	A	SNP	DAG1	ENST00000308775	human	ensembl	74_37	+1	known	silent	c.933	p.R311	0.991	NULL	pfam_DAG1,superfamily_Alpha-dystroglycan_domain_2,superfamily_Cadherin-like,smart_Cadg	-	no_errors	DAG1	HGNC	ENSG00000173402				123	0	0	93	5	5.10204
HYAL3	0	genome.wustl.edu	37	3	50332546	50332546	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	3	50332546	50332546	T	G	SNP	HYAL3	ENST00000336307	human	ensembl	74_37	-1	known	missense	c.488	p.Q163P	0.800	pfam_Hyaluronidase,superfamily_Glycoside_hydrolase_SF,pirsf_Hyaluronidase	pfam_Hyaluronidase,superfamily_Glycoside_hydrolase_SF,pirsf_Hyaluronidase,prints_Hyaluronidase	-	no_errors	HYAL3	HGNC	ENSG00000186792				121	0	0	52	25	32.4675
TLR9	0	genome.wustl.edu	37	3	52257641	52257641	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	3	52257641	52257641	G	A	SNP	TLR9	ENST00000597542	human	ensembl	74_37	-1	known	missense	c.763	p.R255C	0.975	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,pfam_TIR_dom,superfamily_TIR_dom,smart_Leu-rich_rpt_typical-subtyp,smart_TIR_dom,pfscan_TIR_dom	-	no_errors	TLR9	HGNC	ENSG00000239732				38	0	0	20	13	39.3939
DNAH12	0	genome.wustl.edu	37	3	57493550	57493550	+	Silent	SNP	A	A	G			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	3	57493550	57493550	A	G	SNP	DNAH12	ENST00000351747	human	ensembl	74_37	-1	known	silent	c.717	p.I239	1.000	NULL	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH12	HGNC	ENSG00000174844				91	0	0	58	19	24.6753
TRMT10A	0	genome.wustl.edu	37	4	100479282	100479282	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	4	100479282	100479282	C	T	SNP	TRMT10A	ENST00000273962	human	ensembl	74_37	-1	known	missense	c.272	p.R91H	0.986	pirsf_tRNA_MeTfrase_TRM10	pfam_tRNA_m1G_MeTrfase,pirsf_tRNA_MeTfrase_TRM10	-	no_errors	TRMT10A	HGNC	ENSG00000145331				68	0	0	34	20	37.037
CFI	0	genome.wustl.edu	37	4	110681532	110681532	+	Silent	SNP	G	G	A			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	4	110681532	110681532	G	A	SNP	CFI	ENST00000394634	human	ensembl	74_37	-1	known	silent	c.777	p.C259	0.992	pfam_LDrepeatLR_classA_rpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,pfscan_LDrepeatLR_classA_rpt	pfam_Peptidase_S1,pfam_LDrepeatLR_classA_rpt,pfam_SRCR,superfamily_Trypsin-like_Pept_dom,superfamily_Srcr_rcpt-rel,superfamily_LDrepeatLR_classA_rpt,smart_FacI_MAC,smart_Srcr_rcpt-rel,smart_LDrepeatLR_classA_rpt,smart_Peptidase_S1,pfscan_LDrepeatLR_classA_rpt,pfscan_SRCR,pfscan_Peptidase_S1,prints_Peptidase_S1A,prints_LDrepeatLR_classA_rpt	-	no_errors	CFI	HGNC	ENSG00000205403				99	0	0	104	12	10.3448
QRFPR	0	genome.wustl.edu	37	4	122257967	122257967	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	4	122257967	122257967	G	A	SNP	QRFPR	ENST00000394427	human	ensembl	74_37	-1	known	missense	c.556	p.L186F	0.914	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_NPY_rcpt,prints_NPFF_rcpt	-	no_errors	QRFPR	HGNC	ENSG00000186867				487	1	0.204918	328	117	26.2921
ANXA5	0	genome.wustl.edu	37	4	122602903	122602903	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	4	122602903	122602903	T	C	SNP	ANXA5	ENST00000296511	human	ensembl	74_37	-1	known	missense	c.317	p.N106S	0.958	pfam_Annexin_repeat,smart_Annexin_repeat,prints_Annexin	pfam_Annexin_repeat,smart_Annexin_repeat,prints_Annexin,prints_AnnexinV,prints_AnnexinIV	-	no_errors	ANXA5	HGNC	ENSG00000164111				173	0	0	112	40	26.3158
KIAA1109	0	genome.wustl.edu	37	4	123192637	123192637	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	4	123192637	123192637	G	A	SNP	KIAA1109	ENST00000264501	human	ensembl	74_37	+1	known	missense	c.7958	p.R2653Q	1.000	NULL	pfam_Fragile_site-assoc_C	-	no_errors	KIAA1109	HGNC	ENSG00000138688				81	0	0	62	16	20.5128
INPP4B	0	genome.wustl.edu	37	4	143094842	143094842	+	Silent	SNP	A	A	G			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	4	143094842	143094842	A	G	SNP	INPP4B	ENST00000509777	human	ensembl	74_37	-1	known	silent	c.1302	p.S434	1.000	NULL	superfamily_C2_dom	-	no_errors	INPP4B	HGNC	ENSG00000109452				167	0	0	110	43	28.1046
NR3C2	0	genome.wustl.edu	37	4	149356493	149356493	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	4	149356493	149356493	C	T	SNP	NR3C2	ENST00000355292	human	ensembl	74_37	-1	known	missense	c.1520	p.S507N	1.000	NULL	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Znf_hrmn_rcpt	-	no_errors	NR3C2	HGNC	ENSG00000151623				124	0	0	81	36	30.7692
RBM46	0	genome.wustl.edu	37	4	155720669	155720669	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	4	155720669	155720669	T	C	SNP	RBM46	ENST00000281722	human	ensembl	74_37	+1	known	missense	c.1355	p.L452S	0.936	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,tigrfam_HnRNP_R/Q_splicing_fac	-	no_errors	RBM46	HGNC	ENSG00000151962				30	0	0	25	8	24.2424
CPE	0	genome.wustl.edu	37	4	166388881	166388881	+	Silent	SNP	C	C	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	4	166388881	166388881	C	T	SNP	CPE	ENST00000402744	human	ensembl	74_37	+1	known	silent	c.546	p.A182	0.998	pfam_Peptidase_M14,smart_Peptidase_M14	pfam_Peptidase_M14,superfamily_CarboxyPept-like_regulatory,smart_Peptidase_M14,prints_Peptidase_M14	-	no_errors	CPE	HGNC	ENSG00000109472				112	0	0	83	39	31.9672
TLR3	0	genome.wustl.edu	37	4	186997931	186997931	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	4	186997931	186997931	T	C	SNP	TLR3	ENST00000296795	human	ensembl	74_37	+1	known	missense	c.158	p.I53T	1.000	smart_Leu-rich_rpt_typical-subtyp	pfam_TIR_dom,pfam_Leu-rich_rpt,superfamily_TIR_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_TIR_dom,pfscan_TIR_dom	-	no_errors	TLR3	HGNC	ENSG00000164342				122	0	0	88	48	35.2941
SRP72	0	genome.wustl.edu	37	4	57354156	57354156	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	4	57354156	57354156	G	T	SNP	SRP72	ENST00000342756	human	ensembl	74_37	+1	known	nonsense	c.1201	p.E401*	1.000	NULL	pfam_Signal_recog_part_SRP72_RNA-bd,pfam_TPR_1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	SRP72	HGNC	ENSG00000174780				36	0	0	22	13	37.1429
REST	0	genome.wustl.edu	37	4	57797557	57797557	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	4	57797557	57797557	G	A	SNP	REST	ENST00000309042	human	ensembl	74_37	+1	known	missense	c.2533	p.V845I	0.992	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	REST	HGNC	ENSG00000084093				370	0	0	236	115	32.7635
WFS1	0	genome.wustl.edu	37	4	6303248	6303248	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	4	6303248	6303248	G	A	SNP	WFS1	ENST00000226760	human	ensembl	74_37	+1	known	missense	c.1726	p.G576S	1.000	NULL	NULL	-	no_errors	WFS1	HGNC	ENSG00000109501				159	0	0	103	58	36.0248
TADA2B	0	genome.wustl.edu	37	4	7056038	7056038	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	4	7056038	7056038	G	A	SNP	TADA2B	ENST00000310074	human	ensembl	74_37	+1	known	missense	c.520	p.E174K	1.000	pirsf_Transcriptional_adaptor_2	pfam_SANT/Myb,pfam_Znf_ZZ,superfamily_Homeodomain-like,smart_Znf_ZZ,smart_SANT/Myb,pirsf_Transcriptional_adaptor_2,pfscan_Znf_ZZ,pfscan_Myb-like_dom	-	no_errors	TADA2B	HGNC	ENSG00000173011				39	0	0	23	9	28.125
ANKRD17	0	genome.wustl.edu	37	4	74005551	74005551	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	4	74005551	74005551	G	A	SNP	ANKRD17	ENST00000358602	human	ensembl	74_37	-1	known	missense	c.2782	p.R928W	1.000	pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_KH_dom_type_1,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_KH_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_KH_dom_type_1,prints_Ankyrin_rpt	-	no_errors	ANKRD17	HGNC	ENSG00000132466				159	0	0	111	48	30.1887
ACOX3	0	genome.wustl.edu	37	4	8368524	8368524	+	RNA	SNP	T	T	C			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	4	8368524	8368524	T	C	SNP	ACOX3	ENST00000515797	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ACOX3	HGNC	ENSG00000087008				17	0	0	12	6	33.3333
HELQ	0	genome.wustl.edu	37	4	84370031	84370031	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	4	84370031	84370031	T	G	SNP	HELQ	ENST00000295488	human	ensembl	74_37	-1	known	missense	c.1096	p.T366P	1.000	pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,superfamily_DNA_repair_Rad51/TF_NusA_a-hlx,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	HELQ	HGNC	ENSG00000163312				115	1	0.862069	78	36	31.5789
NKX6-1	0	genome.wustl.edu	37	4	85414492	85414492	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	4	85414492	85414492	C	T	SNP	NKX6-1	ENST00000295886	human	ensembl	74_37	-1	known	missense	c.1054	p.G352S	0.996	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_HTH_motif,prints_Homeobox_metazoa	-	no_errors	NKX6-1	HGNC	ENSG00000163623				74	0	0	51	31	37.8049
SPARCL1	0	genome.wustl.edu	37	4	88414917	88414917	+	Silent	SNP	G	G	A			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	4	88414917	88414917	G	A	SNP	SPARCL1	ENST00000282470	human	ensembl	74_37	-1	known	silent	c.1035	p.G345	0.002	pirsf_SPARC-like_p1	pfam_SPARC/Testican_Ca-bd-dom,pfam_Kazal_dom,pfam_Follistatin/Osteonectin_EGF,smart_Fol_N,smart_Kazal_dom,pirsf_SPARC-like_p1,pfscan_EF_hand_dom	-	no_errors	SPARCL1	HGNC	ENSG00000152583				152	0	0	90	52	36.6197
DMP1	0	genome.wustl.edu	37	4	88583274	88583274	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	4	88583274	88583274	G	A	SNP	DMP1	ENST00000339673	human	ensembl	74_37	+1	known	missense	c.344	p.G115D	0.063	pfam_DMP1	pfam_DMP1	-	no_errors	DMP1	HGNC	ENSG00000152592				76	0	0	41	31	43.0556
ZNF608	0	genome.wustl.edu	37	5	124036925	124036925	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	5	124036925	124036925	G	A	SNP	ZNF608	ENST00000306315	human	ensembl	74_37	-1	known	missense	c.944	p.P315L	1.000	NULL	NULL	-	no_errors	ZNF608	HGNC	ENSG00000168916				146	0	0	109	49	31.0127
FSTL4	0	genome.wustl.edu	37	5	132560966	132560966	+	Silent	SNP	G	G	A			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	5	132560966	132560966	G	A	SNP	FSTL4	ENST00000265342	human	ensembl	74_37	-1	known	silent	c.1188	p.S396	0.213	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Kazal_dom,smart_Kazal_dom,smart_Ig_sub,smart_Ig_sub2,pfscan_EF_hand_dom,pfscan_Ig-like_dom	-	no_errors	FSTL4	HGNC	ENSG00000053108				180	0	0	122	45	26.9461
NEUROG1	0	genome.wustl.edu	37	5	134871302	134871302	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	5	134871302	134871302	T	C	SNP	NEUROG1	ENST00000314744	human	ensembl	74_37	-1	known	missense	c.79	p.T27A	1.000	NULL	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	NEUROG1	HGNC	ENSG00000181965				27	0	0	19	5	20.8333
KLHL3	0	genome.wustl.edu	37	5	136964109	136964109	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	5	136964109	136964109	C	T	SNP	KLHL3	ENST00000309755	human	ensembl	74_37	-1	known	missense	c.1468	p.G490R	1.000	pfam_Kelch_1,pfam_Kelch_2,smart_Kelch_1,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BACK,pfam_BTB_POZ,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL3	HGNC	ENSG00000146021				220	0	0	182	62	25.4098
DNAH5	0	genome.wustl.edu	37	5	13928247	13928247	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	5	13928247	13928247	C	T	SNP	DNAH5	ENST00000265104	human	ensembl	74_37	-1	known	missense	c.233	p.R78Q	1.000	NULL	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH5	HGNC	ENSG00000039139				86	0	0	56	18	24.3243
PCDHA3	0	genome.wustl.edu	37	5	140182453	140182453	+	Silent	SNP	C	C	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	5	140182453	140182453	C	T	SNP	PCDHA3	ENST00000522353	human	ensembl	74_37	+1	known	silent	c.1671	p.D557	0.993	superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA3	HGNC	ENSG00000255408				193	1	0.515464	122	52	29.8851
PCDHA11	0	genome.wustl.edu	37	5	140250586	140250586	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	5	140250586	140250586	C	T	SNP	PCDHA11	ENST00000398640	human	ensembl	74_37	+1	known	missense	c.1898	p.T633M	0.922	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA11	HGNC	ENSG00000249158				122	0	0	70	32	31.3725
PCDHA13	0	genome.wustl.edu	37	5	140264030	140264030	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	5	140264030	140264030	C	T	SNP	PCDHA13	ENST00000289272	human	ensembl	74_37	+1	known	missense	c.2177	p.P726L	0.004	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA13	HGNC	ENSG00000239389				214	0	0	139	8	5.44218
PCDHB3	0	genome.wustl.edu	37	5	140482030	140482030	+	Silent	SNP	C	C	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	5	140482030	140482030	C	T	SNP	PCDHB3	ENST00000231130	human	ensembl	74_37	+1	known	silent	c.1797	p.N599	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB3	HGNC	ENSG00000113205				106	0	0	62	17	21.519
PCDHB5	0	genome.wustl.edu	37	5	140515675	140515675	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	5	140515675	140515675	C	T	SNP	PCDHB5	ENST00000231134	human	ensembl	74_37	+1	known	missense	c.659	p.P220L	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB5	HGNC	ENSG00000113209				256	0	0	126	75	37.3134
PCDHB16	0	genome.wustl.edu	37	5	140563517	140563517	+	Silent	SNP	C	C	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	5	140563517	140563517	C	T	SNP	PCDHB16	ENST00000361016	human	ensembl	74_37	+1	known	silent	c.1383	p.R461	0.069	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB16	HGNC	ENSG00000196963				204	0	0	114	42	26.9231
PCDHB14	0	genome.wustl.edu	37	5	140604527	140604527	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	5	140604527	140604527	G	A	SNP	PCDHB14	ENST00000239449	human	ensembl	74_37	+1	known	missense	c.1450	p.A484T	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB14	HGNC	ENSG00000120327				221	0	0	111	55	33.1325
PCDHGA3	0	genome.wustl.edu	37	5	140724254	140724254	+	Silent	SNP	C	C	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	5	140724254	140724254	C	T	SNP	PCDHGA3	ENST00000253812	human	ensembl	74_37	+1	known	silent	c.654	p.G218	0.000	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA3	HGNC	ENSG00000254245				93	0	0	53	17	24.2857
PCDHGA3	0	genome.wustl.edu	37	5	140724659	140724659	+	Silent	SNP	A	A	G			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	5	140724659	140724659	A	G	SNP	PCDHGA3	ENST00000253812	human	ensembl	74_37	+1	known	silent	c.1059	p.T353	0.000	superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA3	HGNC	ENSG00000254245				109	0	0	78	37	32.1739
TCERG1	0	genome.wustl.edu	37	5	145838686	145838686	+	Silent	SNP	G	G	A			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	5	145838686	145838686	G	A	SNP	TCERG1	ENST00000296702	human	ensembl	74_37	+1	known	silent	c.678	p.Q226	1.000	NULL	pfam_FF_domain,pfam_WW_dom,superfamily_FF_domain,superfamily_WW_dom,smart_WW_dom,smart_FF_domain,pfscan_WW_dom	-	no_errors	TCERG1	HGNC	ENSG00000113649				46	0	0	21	8	27.5862
ARHGEF37	0	genome.wustl.edu	37	5	148980674	148980674	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	5	148980674	148980674	C	T	SNP	ARHGEF37	ENST00000333677	human	ensembl	74_37	+1	known	missense	c.190	p.P64S	1.000	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_DH-domain	pfam_DH-domain,pfam_BAR_dom,pfam_SH3_2,pfam_SH3_domain,superfamily_DH-domain,superfamily_SH3_domain,smart_DH-domain,smart_BAR_dom,smart_SH3_domain,pfscan_BAR_dom,pfscan_SH3_domain,pfscan_DH-domain	-	no_errors	ARHGEF37	HGNC	ENSG00000183111				380	1	0.262467	251	96	27.6657
FBXL7	0	genome.wustl.edu	37	5	15936714	15936714	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	5	15936714	15936714	C	T	SNP	FBXL7	ENST00000504595	human	ensembl	74_37	+1	known	nonsense	c.895	p.Q299*	1.000	smart_Leu-rich_rpt_Cys-con_subtyp	pfam_Leu-rich_rpt,pfam_F-box_dom,superfamily_F-box_dom,smart_F-box_dom,smart_Leu-rich_rpt_Cys-con_subtyp,pfscan_F-box_dom	-	no_errors	FBXL7	HGNC	ENSG00000183580				40	0	0	30	13	30.2326
GABRA6	0	genome.wustl.edu	37	5	161113339	161113339	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	5	161113339	161113339	C	T	SNP	GABRA6	ENST00000274545	human	ensembl	74_37	+1	known	missense	c.142	p.R48W	1.000	pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,prints_GABBAg_rcpt,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABAAa_rcpt,prints_GABAA_rcpt,prints_GABBAa6_rcpt,prints_Neur_channel,prints_GABBAg_rcpt,tigrfam_Neur_channel	-	no_errors	GABRA6	HGNC	ENSG00000145863				140	1	0.70922	93	28	23.1405
TENM2	0	genome.wustl.edu	37	5	167673994	167673994	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	5	167673994	167673994	A	G	SNP	TENM2	ENST00000518659	human	ensembl	74_37	+1	known	missense	c.6050	p.Q2017R	1.000	superfamily_ConA-like_lec_gl_sf	pfam_Ten_N,pfam_EGF_extracell,superfamily_CarboxyPept-like_regulatory,superfamily_Quino_amine_DH_bsu,superfamily_ConA-like_lec_gl_sf,superfamily_Cytokine_IL1-like,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom,tigrfam_YD,tigrfam_Rhs_assc_core	-	no_errors	TENM2	HGNC	ENSG00000145934				82	0	0	73	25	25.5102
KCNMB1	0	genome.wustl.edu	37	5	169805926	169805926	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	5	169805926	169805926	C	T	SNP	KCNMB1	ENST00000274629	human	ensembl	74_37	-1	known	missense	c.358	p.V120M	0.976	pfam_K_chnl_Ca-activ_BK_bsu	pfam_K_chnl_Ca-activ_BK_bsu,prints_K_chnl_Ca-activ_BK_bsu	-	no_errors	KCNMB1	HGNC	ENSG00000145936				71	0	0	42	25	37.3134
CPEB4	0	genome.wustl.edu	37	5	173359456	173359456	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	5	173359456	173359456	G	A	SNP	CPEB4	ENST00000265085	human	ensembl	74_37	+1	known	missense	c.1211	p.R404H	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	CPEB4	HGNC	ENSG00000113742				106	0	0	66	23	25.8427
MAML1	0	genome.wustl.edu	37	5	179195922	179195922	+	Silent	SNP	C	C	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	5	179195922	179195922	C	T	SNP	MAML1	ENST00000292599	human	ensembl	74_37	+1	known	silent	c.1803	p.S601	0.227	NULL	pfam_Neuroggenic_mastermind-like_N	-	no_errors	MAML1	HGNC	ENSG00000161021				305	0	0	211	62	22.7106
AMACR	0	genome.wustl.edu	37	5	34004802	34004802	+	Silent	SNP	C	C	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	5	34004802	34004802	C	T	SNP	AMACR	ENST00000335606	human	ensembl	74_37	-1	known	silent	c.429	p.P143	0.000	pfam_CoA-Trfase_fam_III,superfamily_CoA-Trfase_III_dom	pfam_CoA-Trfase_fam_III,superfamily_CoA-Trfase_III_dom	-	no_errors	AMACR	HGNC	ENSG00000242110				143	0	0	80	43	34.9593
CKMT2	0	genome.wustl.edu	37	5	80550869	80550869	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	5	80550869	80550869	C	T	SNP	CKMT2	ENST00000254035	human	ensembl	74_37	+1	known	missense	c.505	p.R169C	1.000	pfam_ATP-guanido_PTrfase_cat	pfam_ATP-guanido_PTrfase_cat,pfam_ATP-guanido_PTrfase_N,superfamily_ATP-guanido_PTrfase_N	-	no_errors	CKMT2	HGNC	ENSG00000131730				56	0	0	39	12	23.5294
MCHR2	0	genome.wustl.edu	37	6	100368816	100368816	+	Silent	SNP	C	C	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	6	100368816	100368816	C	T	SNP	MCHR2	ENST00000281806	human	ensembl	74_37	-1	known	silent	c.1023	p.*341	0.914	NULL	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_MCH2_receptor,prints_GPCR_Rhodpsn,prints_MCH_rcpt	-	no_errors	MCHR2	HGNC	ENSG00000152034				164	1	0.606061	108	28	20.5882
PREP	0	genome.wustl.edu	37	6	105825262	105825262	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	6	105825262	105825262	G	A	SNP	PREP	ENST00000369110	human	ensembl	74_37	-1	known	missense	c.253	p.R85W	0.997	pfam_Pept_S9A_N	pfam_Pept_S9A_N,pfam_Peptidase_S9,prints_Peptidase_S9A	-	no_errors	PREP	HGNC	ENSG00000085377				199	0	0	131	44	25.1429
SOBP	0	genome.wustl.edu	37	6	107956521	107956521	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	6	107956521	107956521	G	A	SNP	SOBP	ENST00000317357	human	ensembl	74_37	+1	known	missense	c.2473	p.G825S	1.000	NULL	NULL	-	no_errors	SOBP	HGNC	ENSG00000112320				135	0	0	74	32	30.1887
FYN	0	genome.wustl.edu	37	6	111995792	111995792	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	6	111995792	111995792	G	T	SNP	FYN	ENST00000354650	human	ensembl	74_37	-1	known	missense	c.1315	p.L439M	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_SH2,pfam_SH3_domain,pfam_SH3_2,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_SH3_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_SH2,pfscan_SH3_domain,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2,prints_SH3_domain	-	no_errors	FYN	HGNC	ENSG00000010810				228	2	0.869565	147	56	27.5862
DSE	0	genome.wustl.edu	37	6	116580028	116580028	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	6	116580028	116580028	C	T	SNP	DSE	ENST00000540275	human	ensembl	74_37	+1	known	missense	c.422	p.A141V	1.000	NULL	NULL	-	no_errors	DSE	HGNC	ENSG00000111817				42	0	0	29	15	34.0909
RSPH4A	0	genome.wustl.edu	37	6	116949263	116949263	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	6	116949263	116949263	C	T	SNP	RSPH4A	ENST00000229554	human	ensembl	74_37	+1	known	nonsense	c.1393	p.R465*	0.473	pfam_Radial_spoke	pfam_Radial_spoke	-	no_errors	RSPH4A	HGNC	ENSG00000111834				149	0	0	85	28	24.7788
FAM184A	0	genome.wustl.edu	37	6	119345681	119345681	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	6	119345681	119345681	T	C	SNP	FAM184A	ENST00000338891	human	ensembl	74_37	-1	known	missense	c.457	p.T153A	1.000	NULL	superfamily_Prefoldin	-	no_errors	FAM184A	HGNC	ENSG00000111879				143	0	0	107	44	29.1391
HIVEP1	0	genome.wustl.edu	37	6	12122268	12122268	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	6	12122268	12122268	G	A	SNP	HIVEP1	ENST00000379388	human	ensembl	74_37	+1	known	missense	c.2240	p.R747Q	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	HIVEP1	HGNC	ENSG00000095951				69	0	0	35	21	37.5
GJA1	0	genome.wustl.edu	37	6	121768435	121768435	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	6	121768435	121768435	C	T	SNP	GJA1	ENST00000282561	human	ensembl	74_37	+1	known	nonsense	c.442	p.R148*	1.000	NULL	pfam_Connexin_N,pfam_Connexin_CCC,pfam_Connexin43_C,smart_Connexin_N,prints_Connexin,prints_Connexin43	-	no_errors	GJA1	HGNC	ENSG00000152661				146	0	0	96	34	26.1538
MED23	0	genome.wustl.edu	37	6	131914223	131914223	+	Silent	SNP	A	A	C			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	6	131914223	131914223	A	C	SNP	MED23	ENST00000368058	human	ensembl	74_37	-1	known	silent	c.3339	p.V1113	0.997	pfam_Mediator_Med23	pfam_Mediator_Med23	-	no_errors	MED23	HGNC	ENSG00000112282				103	0	0	73	29	28.4314
ENPP1	0	genome.wustl.edu	37	6	132185669	132185669	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	6	132185669	132185669	T	G	SNP	ENPP1	ENST00000360971	human	ensembl	74_37	+1	known	missense	c.1049	p.I350S	0.995	pfam_Phosphodiest/P_Trfase,superfamily_Alkaline_phosphatase_core	pfam_Phosphodiest/P_Trfase,pfam_Somatomedin_B_dom,pfam_DNA/RNA_non-sp_Endonuclease,superfamily_Alkaline_phosphatase_core,smart_Somatomedin_B_dom,smart_DNA/RNA_non-sp_Endonuclease,smart_Extracellular_endonuc_su_A,pfscan_Somatomedin_B_dom,prints_Somatomedin_B_chordata	-	no_errors	ENPP1	HGNC	ENSG00000197594				35	0	0	33	13	28.2609
TAAR1	0	genome.wustl.edu	37	6	132966641	132966641	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	6	132966641	132966641	C	T	SNP	TAAR1	ENST00000275216	human	ensembl	74_37	-1	known	missense	c.502	p.A168T	0.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_GPCR_Rhodpsn,prints_TAAR1,prints_TAAR_fam,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	TAAR1	HGNC	ENSG00000146399				134	0	0	106	30	22.0588
GRM1	0	genome.wustl.edu	37	6	146673425	146673425	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	6	146673425	146673425	A	T	SNP	GRM1	ENST00000282753	human	ensembl	74_37	+1	known	missense	c.1226	p.K409M	1.000	pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I,prints_GPCR_3_mtglu_rcpt	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_Metabotropic_Glu_rcpt_Homer-bd,pfam_GPCR_3_9-Cys_dom,superfamily_Peripla_BP_I,pfscan_GPCR_3_C,prints_GPCR_3_mtglu_rcpt_1,prints_GPCR_3,prints_GPCR_3_mtglu_rcpt,prints_GPCR_3_mtglu_rcpt_5	-	no_errors	GRM1	HGNC	ENSG00000152822				199	0	0	109	58	34.7305
SYNE1	0	genome.wustl.edu	37	6	152740727	152740727	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	6	152740727	152740727	G	A	SNP	SYNE1	ENST00000265368	human	ensembl	74_37	-1	known	nonsense	c.5398	p.Q1800*	0.880	superfamily_Calpain_domain_III,superfamily_ABC1_TM_dom	pfam_Spectrin_repeat,pfam_CH-domain,pfam_KASH,superfamily_CH-domain,superfamily_Calpain_domain_III,superfamily_ABC1_TM_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE1	HGNC	ENSG00000131018				95	0	0	47	25	34.7222
UNC93A	0	genome.wustl.edu	37	6	167721271	167721271	+	Silent	SNP	G	G	A			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	6	167721271	167721271	G	A	SNP	UNC93A	ENST00000230256	human	ensembl	74_37	+1	known	silent	c.981	p.A327	0.000	superfamily_MFS_dom_general_subst_transpt	pfam_Ion_channel_UNC-93,superfamily_MFS_dom_general_subst_transpt	-	no_errors	UNC93A	HGNC	ENSG00000112494				135	0	0	86	28	24.5614
MLLT4	0	genome.wustl.edu	37	6	168294542	168294542	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	6	168294542	168294542	G	A	SNP	MLLT4	ENST00000366806	human	ensembl	74_37	+1	known	missense	c.1178	p.G393E	1.000	NULL	pfam_Ras-assoc,pfam_Dil_domain,pfam_PDZ,pfam_FHA_dom,superfamily_PDZ,superfamily_SMAD_FHA_domain,smart_Ras-assoc,smart_FHA_dom,smart_PDZ,pfscan_Dilute,pfscan_PDZ,pfscan_Ras-assoc	-	no_errors	MLLT4	HGNC	ENSG00000130396				14	0	0	4	3	42.8571
CDKAL1	0	genome.wustl.edu	37	6	21231094	21231094	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	6	21231094	21231094	C	T	SNP	CDKAL1	ENST00000274695	human	ensembl	74_37	+1	known	missense	c.1564	p.L522F	0.006	NULL	pfam_Methylthiotransferase_N,pfam_rSAM,pfam_TRAM_dom,smart_Elp3/MiaB/NifB,pfscan_TRAM_dom,tigrfam_MiaB-like_B,tigrfam_Methylthiotransferase	-	no_errors	CDKAL1	HGNC	ENSG00000145996				87	0	0	27	23	46
HIST1H4F	0	genome.wustl.edu	37	6	26240923	26240923	+	Silent	SNP	G	G	A			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	6	26240923	26240923	G	A	SNP	HIST1H4F	ENST00000377745	human	ensembl	74_37	+1	known	silent	c.270	p.A90	0.995	pfam_Histone_core_D,pfam_TAF_TATA-bd,superfamily_Histone-fold,smart_Histone_H4,smart_TAF_TATA-bd,prints_Histone_H4	pfam_Histone_core_D,pfam_TAF_TATA-bd,superfamily_Histone-fold,smart_Histone_H4,smart_TAF_TATA-bd,prints_Histone_H4	-	no_errors	HIST1H4F	HGNC	ENSG00000198327				110	0	0	32	25	43.8596
OR10C1	0	genome.wustl.edu	37	6	29408587	29408587	+	Silent	SNP	C	C	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	6	29408587	29408587	C	T	SNP	OR10C1	ENST00000444197	human	ensembl	74_37	+1	known	silent	c.795	p.Y265	0.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	OR10C1	HGNC	ENSG00000206474				455	0	0	150	115	43.3962
TRIM10	0	genome.wustl.edu	37	6	30128498	30128498	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	6	30128498	30128498	T	C	SNP	TRIM10	ENST00000449742	human	ensembl	74_37	-1	known	missense	c.138	p.I46M	0.001	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl_sf,smart_Znf_RING,smart_Znf_B-box,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	TRIM10	HGNC	ENSG00000204613				297	0	0	122	74	37.7551
HLA-B	0	genome.wustl.edu	37	6	31324494	31324494	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	6	31324494	31324494	A	G	SNP	HLA-B	ENST00000412585	human	ensembl	74_37	-1	known	missense	c.314	p.L105P	0.000	pfam_MHC_I_a_a1/a2,superfamily_MHC_I/II-like_Ag-recog,prints_MHC_I_a	pfam_MHC_I_a_a1/a2,pfam_Ig_C1-set,pfam_MHC_I_a_C,superfamily_MHC_I/II-like_Ag-recog,smart_Ig_C1-set,pfscan_Ig-like_dom,prints_MHC_I_a	-	no_errors	HLA-B	HGNC	ENSG00000234745				68	0	0	28	17	37.7778
GRM4	0	genome.wustl.edu	37	6	34029800	34029800	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	6	34029800	34029800	C	T	SNP	GRM4	ENST00000374181	human	ensembl	74_37	-1	known	missense	c.742	p.V248M	0.998	pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I,prints_GPCR_3_mtglu_rcpt	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_GPCR_3_9-Cys_dom,superfamily_Peripla_BP_I,pfscan_GPCR_3_C,prints_GPCR_3,prints_GPCR_3_mtglu_rcpt_4,prints_GPCR_3_mtglu_rcpt,prints_GPCR_3_GABA_rcpt_B	-	no_errors	GRM4	HGNC	ENSG00000124493				81	0	0	30	24	44.4444
MLIP	0	genome.wustl.edu	37	6	54095592	54095592	+	Silent	SNP	G	G	A			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	6	54095592	54095592	G	A	SNP	MLIP	ENST00000274897	human	ensembl	74_37	+1	known	silent	c.1194	p.L398	0.992	NULL	NULL	-	no_errors	MLIP	HGNC	ENSG00000146147				410	0	0	161	140	46.5116
DDX43	0	genome.wustl.edu	37	6	74111617	74111617	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	6	74111617	74111617	A	C	SNP	DDX43	ENST00000370336	human	ensembl	74_37	+1	known	missense	c.472	p.S158R	0.005	NULL	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,pfam_KH_dom_type_1,superfamily_P-loop_NTPase,smart_KH_dom,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_KH_dom_type_1,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX43	HGNC	ENSG00000080007				175	0	0	173	12	6.48649
MEPCE	0	genome.wustl.edu	37	7	100028448	100028448	+	Silent	SNP	C	C	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	7	100028448	100028448	C	T	SNP	MEPCE	ENST00000310512	human	ensembl	74_37	+1	known	silent	c.807	p.H269	1.000	NULL	pfam_Bin3	-	no_errors	MEPCE	HGNC	ENSG00000146834				240	1	0.414938	156	75	32.4675
AGFG2	0	genome.wustl.edu	37	7	100162615	100162615	+	RNA	SNP	C	C	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	7	100162615	100162615	C	T	SNP	AGFG2	ENST00000474713	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	AGFG2	HGNC	ENSG00000106351				329	1	0.30303	223	84	27.3616
GIGYF1	0	genome.wustl.edu	37	7	100281778	100281778	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	7	100281778	100281778	C	T	SNP	GIGYF1	ENST00000275732	human	ensembl	74_37	-1	known	missense	c.1733	p.R578H	1.000	NULL	pfam_GYF,superfamily_GYF,smart_GYF,pfscan_GYF	-	no_errors	GIGYF1	HGNC	ENSG00000146830				45	0	0	26	11	29.7297
SLC12A9	0	genome.wustl.edu	37	7	100463572	100463572	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	7	100463572	100463572	T	C	SNP	SLC12A9	ENST00000354161	human	ensembl	74_37	+1	known	missense	c.2090	p.V697A	1.000	NULL	pfam_AA-permease/SLC12A_dom	-	no_errors	SLC12A9	HGNC	ENSG00000146828				175	0	0	136	11	7.48299
RELN	0	genome.wustl.edu	37	7	103293015	103293015	+	Silent	SNP	C	C	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	7	103293015	103293015	C	T	SNP	RELN	ENST00000424685	human	ensembl	74_37	-1	known	silent	c.1746	p.T582	0.053	NULL	pfam_EGF_extracell,pfam_Reeler_dom,pfam_BNR_rpt,superfamily_Sialidases,superfamily_Growth_fac_rcpt_N_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Reeler_dom	-	no_errors	RELN	HGNC	ENSG00000189056				95	0	0	68	13	16.0494
ORC5	0	genome.wustl.edu	37	7	103844608	103844608	+	Silent	SNP	C	C	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	7	103844608	103844608	C	T	SNP	ORC5	ENST00000297431	human	ensembl	74_37	-1	known	silent	c.147	p.T49	0.999	superfamily_P-loop_NTPase	superfamily_P-loop_NTPase	-	no_errors	ORC5	HGNC	ENSG00000164815				33	0	0	21	9	30
NAMPT	0	genome.wustl.edu	37	7	105891627	105891627	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	7	105891627	105891627	T	C	SNP	NAMPT	ENST00000222553	human	ensembl	74_37	-1	known	missense	c.1378	p.T460A	1.000	pfam_Nic_PRibTrfase-Fam,superfamily_Quinolinate_PRibosylTrfase_C,pirsf_Nicotinamide_PRibTrfase	pfam_Nic_PRibTrfase-Fam,superfamily_Quinolinate_PRibosylTrfase_C,pirsf_Nicotinamide_PRibTrfase	-	no_errors	NAMPT	HGNC	ENSG00000105835				133	0	0	93	42	31.1111
RBM28	0	genome.wustl.edu	37	7	127953322	127953322	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	7	127953322	127953322	C	T	SNP	RBM28	ENST00000223073	human	ensembl	74_37	-1	known	missense	c.2051	p.R684Q	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBM28	HGNC	ENSG00000106344				184	0	0	125	51	28.9773
ZYX	0	genome.wustl.edu	37	7	143079975	143079975	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	7	143079975	143079975	G	A	SNP	ZYX	ENST00000322764	human	ensembl	74_37	+1	known	missense	c.583	p.A195T	0.794	NULL	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	ZYX	HGNC	ENSG00000159840				112	0	0	76	22	22.449
EPHA1	0	genome.wustl.edu	37	7	143091370	143091370	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	7	143091370	143091370	T	C	SNP	EPHA1	ENST00000275815	human	ensembl	74_37	-1	known	missense	c.2419	p.S807G	1.000	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,superfamily_Kinase-like_dom,superfamily_Galactose-bd-like,superfamily_SAM/pointed,superfamily_Fibronectin_type3,superfamily_Growth_fac_rcpt_N_dom,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_dom	-	no_errors	EPHA1	HGNC	ENSG00000146904				162	0	0	100	61	37.8882
OR2F1	0	genome.wustl.edu	37	7	143658000	143658000	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	7	143658000	143658000	T	C	SNP	OR2F1	ENST00000392899	human	ensembl	74_37	+1	known	missense	c.937	p.S313P	0.138	NULL	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2F1	HGNC	ENSG00000213215				96	0	0	58	32	35.5556
ZNF862	0	genome.wustl.edu	37	7	149544928	149544928	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	7	149544928	149544928	A	G	SNP	ZNF862	ENST00000223210	human	ensembl	74_37	+1	known	missense	c.346	p.S116G	0.001	NULL	pfam_Krueppel-associated_box,pfam_HATC_dom_C,superfamily_Krueppel-associated_box,superfamily_RNaseH-like_dom,smart_Krueppel-associated_box,smart_Znf_TTF,pfscan_Krueppel-associated_box	-	no_errors	ZNF862	HGNC	ENSG00000106479				37	0	0	24	5	17.2414
ZNF775	0	genome.wustl.edu	37	7	150094965	150094965	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	7	150094965	150094965	C	T	SNP	ZNF775	ENST00000329630	human	ensembl	74_37	+1	known	missense	c.1396	p.R466C	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF775	HGNC	ENSG00000196456				13	0	0	15	5	25
ASB10	0	genome.wustl.edu	37	7	150878058	150878058	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	7	150878058	150878058	C	T	SNP	ASB10	ENST00000422024	human	ensembl	74_37	-1	known	missense	c.1207	p.A403T	0.974	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_SOCS_C,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_SOCS_C,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SOCS_C,prints_Ankyrin_rpt	-	no_errors	ASB10	HGNC	ENSG00000146926				22	0	0	31	5	13.8889
SMARCD3	0	genome.wustl.edu	37	7	150937306	150937306	+	Silent	SNP	C	C	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	7	150937306	150937306	C	T	SNP	SMARCD3	ENST00000262188	human	ensembl	74_37	-1	known	silent	c.1065	p.T355	0.531	NULL	pfam_SWIB_MDM2_domain,superfamily_SWIB_MDM2_domain,smart_SWIB_domain	-	no_errors	SMARCD3	HGNC	ENSG00000082014				80	0	0	53	26	32.9114
NOM1	0	genome.wustl.edu	37	7	156762298	156762298	+	Silent	SNP	C	C	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	7	156762298	156762298	C	T	SNP	NOM1	ENST00000275820	human	ensembl	74_37	+1	known	silent	c.2484	p.N828	0.001	NULL	pfam_Initiation_fac_eIF4g_MI,pfam_MIF4G-like_typ-3,superfamily_ARM-type_fold,smart_MIF4G-like_typ-3,smart_Initiation_fac_eIF4g_MI	-	no_errors	NOM1	HGNC	ENSG00000146909				270	0	0	185	78	29.6578
ENSG00000229533	0	genome.wustl.edu	37	7	19185033	19185033	+	RNA	SNP	G	G	A			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	7	19185033	19185033	G	A	SNP	ENSG00000229533	ENST00000452700	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	AC003986.5	Clone_based_vega_gene	ENSG00000229533				17	0	0	15	4	21.0526
DNAH11	0	genome.wustl.edu	37	7	21939646	21939646	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	7	21939646	21939646	C	T	SNP	DNAH11	ENST00000328843	human	ensembl	74_37	+1	known	missense	c.13232	p.T4411M	1.000	pfam_Dynein_heavy_dom	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH11	HGNC	ENSG00000105877				42	0	0	36	17	32.0755
CBX3	0	genome.wustl.edu	37	7	26248012	26248012	+	Splice_Site	SNP	G	G	A			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	7	26248012	26248012	G	A	SNP	CBX3	ENST00000337620	human	ensembl	74_37	+1	known	splice_site	c.168-1	e3-1	1.000	-	-	-	no_errors	CBX3	HGNC	ENSG00000122565				48	0	0	46	4	8
PLEKHA8	0	genome.wustl.edu	37	7	30088859	30088859	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	7	30088859	30088859	C	T	SNP	PLEKHA8	ENST00000449726	human	ensembl	74_37	+1	known	missense	c.458	p.T153I	1.000	NULL	pfam_Glycolipid_transfer_prot_dom,pfam_Pleckstrin_homology,superfamily_Glycolipid_transfer_prot_dom,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	PLEKHA8	HGNC	ENSG00000106086				366	1	0.27248	268	103	27.7628
SFRP4	0	genome.wustl.edu	37	7	37956066	37956066	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	7	37956066	37956066	T	A	SNP	SFRP4	ENST00000436072	human	ensembl	74_37	-1	known	missense	c.74	p.E25V	1.000	pfam_Frizzled_dom,superfamily_Frizzled_dom,smart_Frizzled_dom,pfscan_Frizzled_dom	pfam_Frizzled_dom,pfam_Netrin_module_non-TIMP,superfamily_Frizzled_dom,superfamily_TIMP-like_OB-fold,smart_Frizzled_dom,smart_Netrin_module_non-TIMP,pfscan_Frizzled_dom,pfscan_Netrin_domain	-	no_errors	SFRP4	HGNC	ENSG00000106483				74	0	0	59	29	32.9545
HECW1	0	genome.wustl.edu	37	7	43532713	43532713	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	7	43532713	43532713	G	A	SNP	HECW1	ENST00000395891	human	ensembl	74_37	+1	known	missense	c.3371	p.R1124H	1.000	NULL	pfam_HECT,pfam_WW_dom,pfam_C2_dom,superfamily_HECT,superfamily_WW_dom,superfamily_C2_dom,smart_C2_dom,smart_WW_dom,smart_HECT,pfscan_HECT,pfscan_C2_dom,pfscan_WW_dom	-	no_errors	HECW1	HGNC	ENSG00000002746				59	0	0	31	23	42.5926
STK17A	0	genome.wustl.edu	37	7	43664348	43664348	+	Silent	SNP	T	T	A			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	7	43664348	43664348	T	A	SNP	STK17A	ENST00000319357	human	ensembl	74_37	+1	known	silent	c.1152	p.S384	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	STK17A	HGNC	ENSG00000164543				113	0	0	62	33	34.7368
TNS3	0	genome.wustl.edu	37	7	47408673	47408673	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	7	47408673	47408673	C	T	SNP	TNS3	ENST00000311160	human	ensembl	74_37	-1	known	missense	c.1570	p.G524S	0.998	NULL	pfam_PTB,pfam_Tensin_phosphatase_C2-dom,pfam_SH2,superfamily_C2_dom,smart_Tyr_Pase_cat,smart_SH2,smart_PTB/PI_dom,pfscan_SH2,pfscan_Tyr/Dual-sp_Pase,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	TNS3	HGNC	ENSG00000136205				105	0	0	66	21	24.1379
POM121L12	0	genome.wustl.edu	37	7	53104085	53104085	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	7	53104085	53104085	G	A	SNP	POM121L12	ENST00000408890	human	ensembl	74_37	+1	known	missense	c.721	p.G241S	0.000	NULL	NULL	-	no_errors	POM121L12	HGNC	ENSG00000221900				77	0	0	50	24	32.4324
CCT6P1	0	genome.wustl.edu	37	7	65222986	65222986	+	RNA	SNP	G	G	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	7	65222986	65222986	G	T	SNP	CCT6P1	ENST00000442266	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.996	-	-	-	no_errors	CCT6P1	HGNC	ENSG00000228409				31	0	0	26	5	16.129
TYW1	0	genome.wustl.edu	37	7	66648139	66648139	+	Silent	SNP	G	G	A			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	7	66648139	66648139	G	A	SNP	TYW1	ENST00000359626	human	ensembl	74_37	+1	known	silent	c.1725	p.T575	0.102	pfam_rSAM	pfam_rSAM,pfam_Flavodoxin/NO_synth,pfam_tRNA_wybutosine-synth,pfscan_Flavodoxin/NO_synth,prints_Flavdoxin	-	no_errors	TYW1	HGNC	ENSG00000198874				49	0	0	34	9	20.9302
WBSCR28	0	genome.wustl.edu	37	7	73279550	73279550	+	Silent	SNP	T	T	C			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	7	73279550	73279550	T	C	SNP	WBSCR28	ENST00000320531	human	ensembl	74_37	+1	known	silent	c.300	p.A100	0.000	NULL	NULL	-	no_errors	WBSCR28	HGNC	ENSG00000175877				72	0	0	51	23	31.0811
CD36	0	genome.wustl.edu	37	7	80292449	80292449	+	Silent	SNP	G	G	A			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	7	80292449	80292449	G	A	SNP	CD36	ENST00000309881	human	ensembl	74_37	+1	known	silent	c.573	p.P191	0.022	pfam_CD36,prints_CD36_antigen	pfam_CD36,prints_CD36_antigen,prints_CD36	-	no_errors	CD36	HGNC	ENSG00000135218				175	0	0	125	48	27.7457
ZFPM2	0	genome.wustl.edu	37	8	106573672	106573672	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	8	106573672	106573672	C	T	SNP	ZFPM2	ENST00000407775	human	ensembl	74_37	+1	known	missense	c.383	p.P128L	0.991	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZFPM2	HGNC	ENSG00000169946				45	0	0	91	5	5.20833
ZFPM2	0	genome.wustl.edu	37	8	106815517	106815517	+	Silent	SNP	C	C	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	8	106815517	106815517	C	T	SNP	ZFPM2	ENST00000407775	human	ensembl	74_37	+1	known	silent	c.3207	p.H1069	0.293	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZFPM2	HGNC	ENSG00000169946				51	0	0	29	38	56.7164
FAM167A	0	genome.wustl.edu	37	8	11282089	11282089	+	Silent	SNP	G	G	A			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	8	11282089	11282089	G	A	SNP	FAM167A	ENST00000284486	human	ensembl	74_37	-1	known	silent	c.438	p.G146	0.839	pfam_FAM167	pfam_FAM167	-	no_errors	FAM167A	HGNC	ENSG00000154319				60	0	0	34	14	29.1667
CSMD3	0	genome.wustl.edu	37	8	114186058	114186058	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	8	114186058	114186058	C	T	SNP	CSMD3	ENST00000297405	human	ensembl	74_37	-1	known	missense	c.602	p.R201H	1.000	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_CUB_dom,pfam_Sushi_SCR_CCP,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_CUB_dom,smart_Sushi_SCR_CCP,pfscan_CUB_dom,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD3	HGNC	ENSG00000164796				153	0	0	207	47	18.5039
TNFRSF11B	0	genome.wustl.edu	37	8	119945336	119945336	+	Silent	SNP	G	G	A			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	8	119945336	119945336	G	A	SNP	TNFRSF11B	ENST00000297350	human	ensembl	74_37	-1	known	silent	c.234	p.D78	0.006	pirsf_TNFR_11B,pfam_TNFR/NGFR_Cys_rich_reg,smart_TNFR/NGFR_Cys_rich_reg,prints_TNFR_11,pfscan_TNFR/NGFR_Cys_rich_reg	pirsf_TNFR_11B,pfam_TNFR/NGFR_Cys_rich_reg,pfam_Death_domain,superfamily_DEATH-like_dom,smart_TNFR/NGFR_Cys_rich_reg,smart_Death_domain,prints_TNFR_11B,prints_TNFR_11,pfscan_TNFR/NGFR_Cys_rich_reg	-	no_errors	TNFRSF11B	HGNC	ENSG00000164761				185	0	0	247	54	17.9402
HAS2	0	genome.wustl.edu	37	8	122627103	122627103	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	8	122627103	122627103	T	C	SNP	HAS2	ENST00000303924	human	ensembl	74_37	-1	known	missense	c.905	p.Q302R	1.000	pfam_Chitin_synth_fng	pfam_Chitin_synth_fng	-	no_errors	HAS2	HGNC	ENSG00000170961				361	0	0	429	100	18.9036
FAM83A	0	genome.wustl.edu	37	8	124195533	124195533	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	8	124195533	124195533	A	G	SNP	FAM83A	ENST00000318462	human	ensembl	74_37	+1	known	missense	c.437	p.N146S	1.000	pfam_DUF1669	pfam_DUF1669	-	no_errors	FAM83A	HGNC	ENSG00000147689				132	0	0	157	22	12.2905
FAM135B	0	genome.wustl.edu	37	8	139158276	139158276	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	8	139158276	139158276	G	A	SNP	FAM135B	ENST00000395297	human	ensembl	74_37	-1	known	missense	c.3466	p.R1156W	1.000	pfam_DUF676_lipase-like,pfam_PGAP1-like	pfam_DUF676_lipase-like,pfam_DUF3657,pfam_PGAP1-like	-	no_errors	FAM135B	HGNC	ENSG00000147724				101	0	0	105	30	22.2222
EEF1D	0	genome.wustl.edu	37	8	144663405	144663405	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	8	144663405	144663405	G	A	SNP	EEF1D	ENST00000423316	human	ensembl	74_37	-1	known	missense	c.1381	p.R461C	0.996	NULL	pfam_Transl_elong_fac_EF1B_bsu/dsu,pfam_EF-1_beta_acid_region_euk,superfamily_Transl_elong_fac_EF1B_bsu/dsu,smart_Transl_elong_fac_EF1B_bsu/dsu	-	no_errors	EEF1D	HGNC	ENSG00000104529				48	0	0	56	11	16.4179
PLEC	0	genome.wustl.edu	37	8	144996079	144996079	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	8	144996079	144996079	G	A	SNP	PLEC	ENST00000322810	human	ensembl	74_37	-1	known	missense	c.8321	p.A2774V	0.001	NULL	pfam_Plectin_repeat,pfam_CH-domain,pfam_S10_plectin_N,superfamily_CH-domain,superfamily_Chorismate_mutase_type_II,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,pfscan_CH-domain	-	no_errors	PLEC	HGNC	ENSG00000178209				34	0	0	32	6	15.7895
VPS28	0	genome.wustl.edu	37	8	145649364	145649364	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	8	145649364	145649364	C	T	SNP	VPS28	ENST00000377348	human	ensembl	74_37	-1	known	missense	c.608	p.R203Q	0.000	pirsf_VPS28	pfam_VPS28,pirsf_VPS28	-	no_errors	VPS28	HGNC	ENSG00000160948				129	0	0	184	39	17.4888
VPS37A	0	genome.wustl.edu	37	8	17125856	17125856	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	8	17125856	17125856	A	G	SNP	VPS37A	ENST00000324849	human	ensembl	74_37	+1	known	missense	c.290	p.Y97C	1.000	superfamily_UBQ-conjugating_enzyme/RWD	pfam_Mod_r,superfamily_UBQ-conjugating_enzyme/RWD	-	no_errors	VPS37A	HGNC	ENSG00000155975				103	0	0	71	22	23.6559
SLC18A1	0	genome.wustl.edu	37	8	20008200	20008200	+	Silent	SNP	A	A	G			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	8	20008200	20008200	A	G	SNP	SLC18A1	ENST00000276373	human	ensembl	74_37	-1	known	silent	c.1071	p.G357	0.000	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Multidrug-R	-	no_errors	SLC18A1	HGNC	ENSG00000036565				263	1	0.378788	198	61	23.5521
DOCK5	0	genome.wustl.edu	37	8	25199933	25199933	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	8	25199933	25199933	T	G	SNP	DOCK5	ENST00000276440	human	ensembl	74_37	+1	known	missense	c.2527	p.F843V	1.000	superfamily_ARM-type_fold	pfam_DOCK_C,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,superfamily_ARM-type_fold,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	DOCK5	HGNC	ENSG00000147459				16	0	0	9	5	35.7143
TUBBP1	0	genome.wustl.edu	37	8	30209973	30209973	+	RNA	SNP	C	C	A			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	8	30209973	30209973	C	A	SNP	TUBBP1	ENST00000518096	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.991	-	-	-	no_errors	TUBBP1	HGNC	ENSG00000127589				70	0	0	39	19	32.7586
XKR4	0	genome.wustl.edu	37	8	56435947	56435947	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	8	56435947	56435947	G	A	SNP	XKR4	ENST00000327381	human	ensembl	74_37	+1	known	missense	c.1114	p.V372I	0.998	pfam_Transport_prot_XK	pfam_Transport_prot_XK	-	no_errors	XKR4	HGNC	ENSG00000206579				167	1	0.595238	95	132	58.1498
VCPIP1	0	genome.wustl.edu	37	8	67547095	67547095	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	8	67547095	67547095	C	T	SNP	VCPIP1	ENST00000310421	human	ensembl	74_37	-1	known	missense	c.3310	p.A1104T	1.000	NULL	pfam_OTU,pfscan_OTU	-	no_errors	VCPIP1	HGNC	ENSG00000175073				151	0	0	178	51	22.2707
EYA1	0	genome.wustl.edu	37	8	72184073	72184073	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	8	72184073	72184073	G	A	SNP	EYA1	ENST00000340726	human	ensembl	74_37	-1	known	missense	c.886	p.R296C	1.000	NULL	pfam_HAD-like_dom,superfamily_HAD-like_dom,tigrfam_EYA	-	no_errors	EYA1	HGNC	ENSG00000104313				386	0	0	475	104	17.962
HNF4G	0	genome.wustl.edu	37	8	76456180	76456180	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	8	76456180	76456180	C	T	SNP	HNF4G	ENST00000396423	human	ensembl	74_37	+1	known	missense	c.223	p.R75C	1.000	pfam_Znf_hrmn_rcpt,smart_Znf_hrmn_rcpt,pfscan_Znf_hrmn_rcpt,prints_Znf_hrmn_rcpt	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,prints_COUP_TF,prints_Retinoid-X_rcpt/HNF4	-	no_errors	HNF4G	HGNC	ENSG00000164749				176	0	0	101	119	54.0909
ZFHX4	0	genome.wustl.edu	37	8	77764274	77764274	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	8	77764274	77764274	C	A	SNP	ZFHX4	ENST00000521891	human	ensembl	74_37	+1	known	missense	c.5117	p.A1706D	1.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Znf_C2H2-like,smart_Znf_U1,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	ZFHX4	HGNC	ENSG00000091656				120	0	0	146	38	20.6522
SGK223	0	genome.wustl.edu	37	8	8176270	8176270	+	Silent	SNP	C	C	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	8	8176270	8176270	C	T	SNP	SGK223	ENST00000330777	human	ensembl	74_37	-1	known	silent	c.3615	p.L1205	0.999	pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_dom	-	no_errors	SGK223	Uniprot_gn	ENSG00000182319				37	0	0	12	6	33.3333
CPNE3	0	genome.wustl.edu	37	8	87560586	87560586	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	8	87560586	87560586	T	C	SNP	CPNE3	ENST00000198765	human	ensembl	74_37	+1	known	missense	c.937	p.Y313H	1.000	pfam_Copine,smart_VWF_A	pfam_Copine,pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,smart_VWF_A,pfscan_C2_dom	-	no_errors	CPNE3	HGNC	ENSG00000085719				128	0	0	167	31	15.6566
PDP1	0	genome.wustl.edu	37	8	94934286	94934286	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	8	94934286	94934286	C	T	SNP	PDP1	ENST00000396200	human	ensembl	74_37	+1	known	missense	c.74	p.A25V	1.000	NULL	pfam_PP2C-like_dom,superfamily_PP2C-like_dom,smart_PP2C-like_dom	-	no_errors	PDP1	HGNC	ENSG00000164951				136	0	0	83	87	51.1765
PTPN3	0	genome.wustl.edu	37	9	112207535	112207535	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	9	112207535	112207535	A	T	SNP	PTPN3	ENST00000374541	human	ensembl	74_37	-1	known	missense	c.451	p.S151T	0.997	pfam_FERM_central,superfamily_FERM_central,smart_Band_41_domain,pirsf_Tyr_Pase_non-rcpt_typ-3/4,prints_Band_41_fam,prints_Ez/rad/moesin_like,pfscan_FERM_domain	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_FERM_N,pfam_FERM_PH-like_C,pfam_FERM_central,pfam_PDZ,pfam_Dual-sp_phosphatase_cat-dom,superfamily_FERM_central,superfamily_PDZ,smart_Band_41_domain,smart_PDZ,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pirsf_Tyr_Pase_non-rcpt_typ-3/4,prints_Tyr_Pase_rcpt/non-rcpt,prints_Band_41_fam,prints_Ez/rad/moesin_like,pfscan_FERM_domain,pfscan_PDZ,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPN3	HGNC	ENSG00000070159				57	0	0	49	15	23.4375
DAB2IP	0	genome.wustl.edu	37	9	124441061	124441061	+	Splice_Site	SNP	G	G	A			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	9	124441061	124441061	G	A	SNP	DAB2IP	ENST00000408936	human	ensembl	74_37	+1	known	splice_site	c.228+1	e2+1	1.000	-	-	-	no_errors	DAB2IP	HGNC	ENSG00000136848				15	0	0	2	4	66.6667
DAB2IP	0	genome.wustl.edu	37	9	124535255	124535255	+	Silent	SNP	G	G	A			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	9	124535255	124535255	G	A	SNP	DAB2IP	ENST00000408936	human	ensembl	74_37	+1	known	silent	c.2448	p.A816	0.069	pfam_DUF3498	pfam_DUF3498,pfam_RasGAP,pfam_C2_dom,superfamily_Rho_GTPase_activation_prot,superfamily_C2_dom,smart_Pleckstrin_homology,smart_C2_dom,smart_RasGAP,pfscan_Pleckstrin_homology,pfscan_RasGAP	-	no_errors	DAB2IP	HGNC	ENSG00000136848				61	0	0	43	13	23.2143
SH2D3C	0	genome.wustl.edu	37	9	130502091	130502091	+	Silent	SNP	T	T	C			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	9	130502091	130502091	T	C	SNP	SH2D3C	ENST00000314830	human	ensembl	74_37	-1	known	silent	c.2277	p.P759	0.000	smart_RasGRF_CDC25,pfscan_RasGRF_CDC25	pfam_SH2,pfam_RasGRF_CDC25,superfamily_Ras_GEF_dom,smart_SH2,smart_RasGRF_CDC25,pfscan_SH2,pfscan_RasGRF_CDC25	-	no_errors	SH2D3C	HGNC	ENSG00000095370				19	0	0	11	7	38.8889
WDR34	0	genome.wustl.edu	37	9	131396974	131396974	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	9	131396974	131396974	A	G	SNP	WDR34	ENST00000372715	human	ensembl	74_37	-1	known	missense	c.1208	p.F403S	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR34	HGNC	ENSG00000119333				9	0	0	10	3	23.0769
ENSG00000234055	0	genome.wustl.edu	37	9	131860167	131860167	+	RNA	SNP	G	G	A			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	9	131860167	131860167	G	A	SNP	ENSG00000234055	ENST00000434250	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.003	-	-	-	no_errors	RP11-247A12.1	Clone_based_vega_gene	ENSG00000234055				55	0	0	29	18	38.2979
UCK1	0	genome.wustl.edu	37	9	134400578	134400578	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	9	134400578	134400578	T	C	SNP	UCK1	ENST00000372211	human	ensembl	74_37	-1	known	missense	c.698	p.Q233R	1.000	NULL	pfam_PRK/URK,superfamily_P-loop_NTPase,prints_Uridine_kinase	-	no_errors	UCK1	HGNC	ENSG00000130717				93	0	0	47	22	31.8841
COL5A1	0	genome.wustl.edu	37	9	137710590	137710590	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	9	137710590	137710590	G	A	SNP	COL5A1	ENST00000371817	human	ensembl	74_37	+1	known	missense	c.4319	p.R1440Q	0.969	NULL	pfam_Collagen,pfam_Fib_collagen_C,pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,superfamily_Fibrinogen_a/b/g_C_dom,smart_Laminin_G,smart_Fib_collagen_C	-	no_errors	COL5A1	HGNC	ENSG00000130635				29	0	0	14	8	36.3636
COL5A1	0	genome.wustl.edu	37	9	137716476	137716476	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	9	137716476	137716476	C	T	SNP	COL5A1	ENST00000371817	human	ensembl	74_37	+1	known	missense	c.4729	p.P1577S	1.000	NULL	pfam_Collagen,pfam_Fib_collagen_C,pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,superfamily_Fibrinogen_a/b/g_C_dom,smart_Laminin_G,smart_Fib_collagen_C	-	no_errors	COL5A1	HGNC	ENSG00000130635				58	0	0	28	20	41.6667
COL5A1	0	genome.wustl.edu	37	9	137727007	137727007	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	9	137727007	137727007	A	G	SNP	COL5A1	ENST00000371817	human	ensembl	74_37	+1	known	missense	c.5327	p.Y1776C	1.000	pfam_Fib_collagen_C,smart_Fib_collagen_C	pfam_Collagen,pfam_Fib_collagen_C,pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,superfamily_Fibrinogen_a/b/g_C_dom,smart_Laminin_G,smart_Fib_collagen_C	-	no_errors	COL5A1	HGNC	ENSG00000130635				59	0	0	41	21	33.871
PSIP1	0	genome.wustl.edu	37	9	15468838	15468838	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	9	15468838	15468838	G	A	SNP	PSIP1	ENST00000380733	human	ensembl	74_37	-1	known	missense	c.1210	p.R404W	1.000	pfam_LEDGF	pfam_LEDGF,pfam_PWWP_dom,smart_PWWP_dom,pfscan_PWWP_dom,prints_Treacle-like_TCS	-	no_errors	PSIP1	HGNC	ENSG00000164985				68	0	0	49	21	30
IFNA13	0	genome.wustl.edu	37	9	21367521	21367521	+	Silent	SNP	A	A	G			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	9	21367521	21367521	A	G	SNP	IFNA13	ENST00000449498	human	ensembl	74_37	-1	known	silent	c.489	p.C163	0.998	pfam_Interferon_alpha/beta/delta,superfamily_4_helix_cytokine-like_core,smart_Interferon_alpha/beta/delta,prints_Interferon_alpha/beta/delta	pfam_Interferon_alpha/beta/delta,superfamily_4_helix_cytokine-like_core,smart_Interferon_alpha/beta/delta,prints_Interferon_alpha/beta/delta	-	no_errors	IFNA13	HGNC	ENSG00000233816				265	0	0	186	76	29.0076
DOCK8	0	genome.wustl.edu	37	9	332451	332451	+	Silent	SNP	G	G	A			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	9	332451	332451	G	A	SNP	DOCK8	ENST00000453981	human	ensembl	74_37	+1	known	silent	c.1098	p.T366	1.000	NULL	pfam_DOCK_C,pfam_DOCK_C/D_N,superfamily_ARM-type_fold	-	no_errors	DOCK8	HGNC	ENSG00000107099				86	0	0	66	30	31.25
PTENP1	0	genome.wustl.edu	37	9	33676625	33676625	+	RNA	SNP	C	C	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	9	33676625	33676625	C	T	SNP	PTENP1	ENST00000532280	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	PTENP1	HGNC	ENSG00000237984				142	0	0	98	48	32.8767
CNTFR	0	genome.wustl.edu	37	9	34564807	34564807	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	9	34564807	34564807	G	A	SNP	CNTFR	ENST00000351266	human	ensembl	74_37	-1	known	missense	c.109	p.R37C	1.000	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	CNTFR	HGNC	ENSG00000122756				69	0	0	55	27	32.9268
RUSC2	0	genome.wustl.edu	37	9	35557979	35557979	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	9	35557979	35557979	G	A	SNP	RUSC2	ENST00000361226	human	ensembl	74_37	+1	known	missense	c.3052	p.G1018R	1.000	NULL	pfam_Run,pfam_SH3_2,superfamily_SH3_domain,smart_Run,smart_SH3_domain,pfscan_Run,pfscan_SH3_domain	-	no_errors	RUSC2	HGNC	ENSG00000198853				122	0	0	92	24	20.6897
TLN1	0	genome.wustl.edu	37	9	35717226	35717226	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	9	35717226	35717226	G	A	SNP	TLN1	ENST00000314888	human	ensembl	74_37	-1	known	missense	c.2375	p.A792V	0.979	NULL	pfam_Talin_cent,pfam_Vinculin-bd_dom,pfam_ILWEQ_dom,pfam_FERM_N,pfam_FERM_central,pfam_Insln_rcpt_S1,superfamily_Talin_cent,superfamily_Vinculin/catenin,superfamily_FERM_central,smart_Band_41_domain,smart_ILWEQ_dom,pfscan_FERM_domain,pfscan_ILWEQ_dom	-	no_errors	TLN1	HGNC	ENSG00000137076				113	0	0	88	6	6.38298
DOCK8	0	genome.wustl.edu	37	9	414890	414890	+	Silent	SNP	C	C	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	9	414890	414890	C	T	SNP	DOCK8	ENST00000453981	human	ensembl	74_37	+1	known	silent	c.3639	p.A1213	1.000	NULL	pfam_DOCK_C,pfam_DOCK_C/D_N,superfamily_ARM-type_fold	-	no_errors	DOCK8	HGNC	ENSG00000107099				301	1	0.331126	175	95	35.1852
INSL6	0	genome.wustl.edu	37	9	5185595	5185595	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	9	5185595	5185595	C	T	SNP	INSL6	ENST00000381641	human	ensembl	74_37	-1	known	missense	c.8	p.R3Q	0.000	pirsf_Insulin-like_pep_6	pfam_Insulin-like,superfamily_Insulin-like,smart_Insulin-like,pirsf_Insulin-like_pep_6	-	no_errors	INSL6	HGNC	ENSG00000120210				30	0	0	19	10	34.4828
CBWD6	0	genome.wustl.edu	37	9	69247573	69247573	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	9	69247573	69247573	C	T	SNP	CBWD6	ENST00000377457	human	ensembl	74_37	-1	known	missense	c.439	p.A147T	1.000	pfam_CobW/HypB/UreG_dom,superfamily_P-loop_NTPase	pfam_CobW/HypB/UreG_dom,pfam_Cbl_biosynth_CobW-like_C,superfamily_P-loop_NTPase,superfamily_Cbl_biosynth_CobW-like_C,smart_Cbl_biosynth_CobW-like_C	-	no_errors	CBWD6	HGNC	ENSG00000204790				114	1	0.869565	113	6	5.04202
ENSG00000226668	0	genome.wustl.edu	37	9	95648046	95648046	+	RNA	SNP	G	G	A			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	9	95648046	95648046	G	A	SNP	ENSG00000226668	ENST00000446878	human	ensembl	74_37	+1	putative	rna	NULL	NULL	0.002	-	-	-	no_errors	RP11-526D8.7	Clone_based_vega_gene	ENSG00000226668				224	0	0	199	51	20.4
FGD3	0	genome.wustl.edu	37	9	95738590	95738590	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	9	95738590	95738590	G	T	SNP	FGD3	ENST00000337352	human	ensembl	74_37	+1	known	missense	c.52	p.G18W	0.084	NULL	pfam_DH-domain,pfam_Pleckstrin_homology,pfam_Znf_FYVE,superfamily_DH-domain,superfamily_Znf_FYVE_PHD,smart_DH-domain,smart_Pleckstrin_homology,smart_Znf_FYVE,pfscan_Pleckstrin_homology,pfscan_Znf_FYVE-rel,pfscan_DH-domain	-	no_errors	FGD3	HGNC	ENSG00000127084				21	0	0	12	9	42.8571
C9orf129	0	genome.wustl.edu	37	9	96080715	96080715	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	9	96080715	96080715	C	T	SNP	C9orf129	ENST00000375419	human	ensembl	74_37	-1	known	missense	c.556	p.A186T	0.000	NULL	NULL	-	no_errors	C9orf129	HGNC	ENSG00000204352				136	0	0	105	41	28.0822
PHF2	0	genome.wustl.edu	37	9	96437269	96437269	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	9	96437269	96437269	G	T	SNP	PHF2	ENST00000359246	human	ensembl	74_37	+1	known	missense	c.2687	p.R896M	1.000	NULL	pfam_JmjC_dom,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_JmjC_dom,pfscan_JmjC_dom,pfscan_Znf_PHD-finger	-	no_errors	PHF2	HGNC	ENSG00000197724				98	0	0	71	19	21.1111
FRMPD3	0	genome.wustl.edu	37	X	106846277	106846277	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	X	106846277	106846277	A	G	SNP	FRMPD3	ENST00000276185	human	ensembl	74_37	+1	known	missense	c.5107	p.I1703V	0.998	NULL	pfam_FERM_central,pfam_PDZ,superfamily_FERM_central,superfamily_PDZ,smart_PDZ,smart_Band_41_domain,pfscan_FERM_domain,pfscan_PDZ	-	no_errors	FRMPD3	HGNC	ENSG00000147234				96	0	0	55	58	51.3274
CAPN6	0	genome.wustl.edu	37	X	110489890	110489890	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	X	110489890	110489890	C	T	SNP	CAPN6	ENST00000324068	human	ensembl	74_37	-1	known	missense	c.1841	p.R614H	1.000	superfamily_C2_dom,smart_C2_dom	pfam_Peptidase_C2_calpain_cat,pfam_Calpain_domain_III,pfam_C2_dom,superfamily_Calpain_domain_III,superfamily_C2_dom,smart_Peptidase_C2_calpain_cat,smart_Calpain_III,smart_C2_dom,pfscan_Peptidase_C2_calpain_cat,prints_Calpain_cysteine_protease	-	no_errors	CAPN6	HGNC	ENSG00000077274				161	0	0	161	10	5.84795
KIAA1210	0	genome.wustl.edu	37	X	118222233	118222233	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	X	118222233	118222233	C	T	SNP	KIAA1210	ENST00000402510	human	ensembl	74_37	-1	known	missense	c.2960	p.C987Y	0.000	NULL	NULL	-	no_errors	KIAA1210	HGNC	ENSG00000250423				104	0	0	107	31	22.4638
GRIA3	0	genome.wustl.edu	37	X	122319737	122319737	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	X	122319737	122319737	G	A	SNP	GRIA3	ENST00000264357	human	ensembl	74_37	+1	known	missense	c.163	p.V55M	1.000	pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I	pfam_Iontro_glu_rcpt,pfam_ANF_lig-bd_rcpt,pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,superfamily_Peripla_BP_I,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIA3	HGNC	ENSG00000125675				115	1	0.862069	110	38	25.6757
GRIA3	0	genome.wustl.edu	37	X	122537342	122537342	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	X	122537342	122537342	A	G	SNP	GRIA3	ENST00000264357	human	ensembl	74_37	+1	known	missense	c.1265	p.N422S	1.000	NULL	pfam_Iontro_glu_rcpt,pfam_ANF_lig-bd_rcpt,pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,superfamily_Peripla_BP_I,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIA3	HGNC	ENSG00000125675				307	0	0	284	92	24.4681
BCORL1	0	genome.wustl.edu	37	X	129147951	129147951	+	Silent	SNP	G	G	A			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	X	129147951	129147951	G	A	SNP	BCORL1	ENST00000303743	human	ensembl	74_37	+1	known	silent	c.1203	p.T401	0.588	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	BCORL1	HGNC	ENSG00000085185				33	0	0	32	9	21.9512
ZNF280C	0	genome.wustl.edu	37	X	129370483	129370483	+	Silent	SNP	G	G	A			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	X	129370483	129370483	G	A	SNP	ZNF280C	ENST00000370978	human	ensembl	74_37	-1	known	silent	c.624	p.G208	0.000	NULL	smart_Znf_C2H2-like	-	no_errors	ZNF280C	HGNC	ENSG00000056277				139	0	0	164	46	21.9048
TLR8	0	genome.wustl.edu	37	X	12940244	12940244	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	X	12940244	12940244	C	T	SNP	TLR8	ENST00000218032	human	ensembl	74_37	+1	known	missense	c.3085	p.R1029W	0.038	NULL	pfam_Leu-rich_rpt,pfam_TIR_dom,superfamily_TIR_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_TIR_dom,pfscan_TIR_dom	-	no_errors	TLR8	HGNC	ENSG00000101916				258	0	0	262	101	27.8237
FHL1	0	genome.wustl.edu	37	X	135292049	135292049	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	X	135292049	135292049	T	C	SNP	FHL1	ENST00000345434	human	ensembl	74_37	+1	known	missense	c.908	p.V303A	0.998	NULL	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	FHL1	HGNC	ENSG00000022267				199	0	0	199	64	24.3346
ARHGEF6	0	genome.wustl.edu	37	X	135789067	135789067	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	X	135789067	135789067	C	A	SNP	ARHGEF6	ENST00000250617	human	ensembl	74_37	-1	known	missense	c.1046	p.S349I	1.000	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_DH-domain	pfam_DH-domain,pfam_SH3_2,pfam_SH3_domain,pfam_CH-domain,pfam_Pleckstrin_homology,pfam_CAMSAP_CH,superfamily_DH-domain,superfamily_CH-domain,superfamily_SH3_domain,smart_CH-domain,smart_SH3_domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_CH-domain,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_DH-domain,prints_SH3_domain,prints_SM22_calponin	-	no_errors	ARHGEF6	HGNC	ENSG00000129675				277	0	0	307	92	23.0576
CD99L2	0	genome.wustl.edu	37	X	149945829	149945829	+	RNA	SNP	A	A	G			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	X	149945829	149945829	A	G	SNP	CD99L2	ENST00000346693	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.115	-	-	-	no_errors	CD99L2	HGNC	ENSG00000102181				45	0	0	27	12	30.7692
MAGEA10	0	genome.wustl.edu	37	X	151303089	151303089	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	X	151303089	151303089	T	C	SNP	MAGEA10	ENST00000244096	human	ensembl	74_37	-1	known	missense	c.1004	p.K335R	0.001	NULL	pfam_MAGE,pfam_Melanoma_ass_antigen_N,pfscan_MAGE	-	no_errors	MAGEA10	HGNC	ENSG00000124260				336	2	0.591716	340	116	25.4386
HAUS7	0	genome.wustl.edu	37	X	152721808	152721808	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	X	152721808	152721808	G	A	SNP	HAUS7	ENST00000370212	human	ensembl	74_37	-1	known	missense	c.650	p.A217V	0.000	NULL	NULL	-	no_errors	HAUS7	HGNC	ENSG00000213397				112	0	0	108	35	24.4755
ATP2B3	0	genome.wustl.edu	37	X	152813345	152813345	+	Silent	SNP	G	G	A			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	X	152813345	152813345	G	A	SNP	ATP2B3	ENST00000263519	human	ensembl	74_37	+1	known	silent	c.1011	p.A337	0.193	pfam_ATPase_P-typ_transduc_dom_A	pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_cation-transptr_C,pfam_ATP_Ca_trans_C,pfam_HAD-like_dom,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_P-typ_cyto_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Ca-transp_plasma,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP2B3	HGNC	ENSG00000067842				158	0	0	91	93	50.5435
ATP2B3	0	genome.wustl.edu	37	X	152845813	152845813	+	RNA	SNP	C	C	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	X	152845813	152845813	C	T	SNP	ATP2B3	ENST00000496610	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ATP2B3	HGNC	ENSG00000067842				41	0	0	28	25	47.1698
PLXNB3	0	genome.wustl.edu	37	X	153036432	153036432	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	X	153036432	153036432	T	G	SNP	PLXNB3	ENST00000538966	human	ensembl	74_37	+1	known	missense	c.2218	p.S740A	0.521	NULL	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_IPT,pfam_Plexin_repeat,pfam_Semap_dom,superfamily_Semap_dom,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_IPT,pfscan_Semap_dom	-	no_errors	PLXNB3	HGNC	ENSG00000198753				189	0	0	167	48	22.3256
FLNA	0	genome.wustl.edu	37	X	153585838	153585838	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	X	153585838	153585838	C	T	SNP	FLNA	ENST00000369850	human	ensembl	74_37	-1	known	missense	c.4909	p.V1637M	0.972	superfamily_Ig_E-set,smart_Filamin	pfam_Filamin/ABP280_repeat-like,pfam_CH-domain,superfamily_CH-domain,superfamily_Ig_E-set,smart_CH-domain,smart_Filamin,pfscan_CH-domain,pfscan_Filamin/ABP280_repeat-like	-	no_errors	FLNA	HGNC	ENSG00000196924				57	0	0	48	32	40
FLNA	0	genome.wustl.edu	37	X	153587000	153587000	+	RNA	SNP	C	C	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	X	153587000	153587000	C	T	SNP	FLNA	ENST00000466319	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	FLNA	HGNC	ENSG00000196924				67	0	0	78	19	19.5876
GPR64	0	genome.wustl.edu	37	X	19031842	19031842	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	X	19031842	19031842	G	A	SNP	GPR64	ENST00000379869	human	ensembl	74_37	-1	known	missense	c.1061	p.A354V	0.000	NULL	pfam_GPCR_2_secretin-like,pfam_GPS_dom,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	-	no_errors	GPR64	HGNC	ENSG00000173698				243	0	0	191	63	24.8031
SAT1	0	genome.wustl.edu	37	X	23801523	23801523	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	X	23801523	23801523	C	T	SNP	SAT1	ENST00000379270	human	ensembl	74_37	+1	known	missense	c.55	p.R19W	1.000	superfamily_Acyl_CoA_acyltransferase,pfscan_GNAT_dom	pfam_GNAT_dom,superfamily_Acyl_CoA_acyltransferase,pfscan_GNAT_dom	-	no_errors	SAT1	HGNC	ENSG00000130066				46	0	0	39	9	18.75
FAM47C	0	genome.wustl.edu	37	X	37028447	37028447	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	X	37028447	37028447	G	A	SNP	FAM47C	ENST00000358047	human	ensembl	74_37	+1	known	missense	c.1964	p.C655Y	0.001	NULL	NULL	-	no_errors	FAM47C	HGNC	ENSG00000198173				160	0	0	150	39	20.6349
SLC9A7	0	genome.wustl.edu	37	X	46508232	46508232	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	X	46508232	46508232	C	T	SNP	SLC9A7	ENST00000328306	human	ensembl	74_37	-1	known	missense	c.1348	p.V450I	0.995	pfam_Cation/H_exchanger,tigrfam_NaH_exchanger	pfam_Cation/H_exchanger,prints_Na/H_exchanger_6,prints_NaH_exchanger,tigrfam_NaH_exchanger	-	no_errors	SLC9A7	HGNC	ENSG00000065923				103	0	0	81	15	15.625
KCND1	0	genome.wustl.edu	37	X	48826129	48826129	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	X	48826129	48826129	C	T	SNP	KCND1	ENST00000218176	human	ensembl	74_37	-1	known	missense	c.550	p.A184T	0.997	prints_K_chnl,prints_K_chnl_volt-dep_Kv4	pfam_K_chnl_volt-dep_Kv4_C,pfam_T1-type_BTB,pfam_Ion_trans_dom,pfam_Shal-type,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv4,prints_K_chnl_volt-dep_Kv4.1,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv3	-	no_errors	KCND1	HGNC	ENSG00000102057				15	0	0	28	16	36.3636
CCNB3	0	genome.wustl.edu	37	X	50085219	50085219	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	X	50085219	50085219	C	T	SNP	CCNB3	ENST00000276014	human	ensembl	74_37	+1	known	missense	c.3535	p.H1179Y	0.997	pfam_Cyclin_N,superfamily_Cyclin-like,smart_Cyclin-like	pfam_Cyclin_N,pfam_Cyclin_C-dom,superfamily_Cyclin-like,smart_Cyclin-like	-	no_errors	CCNB3	HGNC	ENSG00000147082				221	0	0	232	51	18.0212
SMC1A	0	genome.wustl.edu	37	X	53438754	53438754	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	X	53438754	53438754	T	C	SNP	SMC1A	ENST00000322213	human	ensembl	74_37	-1	known	missense	c.1211	p.Q404R	1.000	pfam_RecF/RecN/SMC_N,superfamily_P-loop_NTPase,prints_Tropomyosin	pfam_RecF/RecN/SMC_N,pfam_SMC_hinge,superfamily_P-loop_NTPase,superfamily_SMC_hinge,smart_SMC_hinge,prints_Tropomyosin	-	no_errors	SMC1A	HGNC	ENSG00000072501				311	0	0	325	86	20.9246
HUWE1	0	genome.wustl.edu	37	X	53600835	53600835	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	X	53600835	53600835	T	C	SNP	HUWE1	ENST00000262854	human	ensembl	74_37	-1	known	missense	c.6187	p.K2063E	1.000	NULL	pfam_E3_Ub_ligase_DUF913,pfam_HECT,pfam_E3_Ub_ligase_DUF908,pfam_WWE-dom,pfam_UBA/Ts_N,superfamily_HECT,superfamily_UBA-like,superfamily_ARM-type_fold,smart_UBA/transl_elong_EF1B_N_euk,smart_HECT,pfscan_HECT,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_WWE-dom	-	no_errors	HUWE1	HGNC	ENSG00000086758				168	0	0	164	50	23.3645
TRO	0	genome.wustl.edu	37	X	54956889	54956889	+	Silent	SNP	T	T	C			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	X	54956889	54956889	T	C	SNP	TRO	ENST00000173898	human	ensembl	74_37	+1	known	silent	c.3732	p.G1244	0.002	NULL	pfam_MAGE,pfscan_MAGE	-	no_errors	TRO	HGNC	ENSG00000067445				123	0	0	115	38	24.8366
AR	0	genome.wustl.edu	37	X	66765158	66765158	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	X	66765158	66765158	T	A	SNP	AR	ENST00000374690	human	ensembl	74_37	+1	known	missense	c.170	p.L57Q	0.929	pfam_Andrgn_rcpt	pfam_Andrgn_rcpt,pfam_Znf_hrmn_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Andrgn_rcpt,prints_Znf_hrmn_rcpt	-	no_errors	AR	HGNC	ENSG00000169083				28	0	0	32	4	11.1111
OTUD6A	0	genome.wustl.edu	37	X	69283028	69283028	+	Silent	SNP	C	C	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	X	69283028	69283028	C	T	SNP	OTUD6A	ENST00000338352	human	ensembl	74_37	+1	known	silent	c.654	p.G218	0.999	pfam_OTU,pfscan_OTU	pfam_OTU,pfscan_OTU	-	no_errors	OTUD6A	HGNC	ENSG00000189401				96	0	0	81	25	23.5849
PDZD11	0	genome.wustl.edu	37	X	69509183	69509183	+	Silent	SNP	G	G	A			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	X	69509183	69509183	G	A	SNP	PDZD11	ENST00000239666	human	ensembl	74_37	-1	known	silent	c.9	p.S3	1.000	NULL	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	PDZD11	HGNC	ENSG00000120509				27	0	0	26	4	13.3333
TAF1	0	genome.wustl.edu	37	X	70602920	70602920	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	X	70602920	70602920	G	A	SNP	TAF1	ENST00000449580	human	ensembl	74_37	+1	known	missense	c.1850	p.R617H	1.000	pirsf_TAF1_animal,pfam_TFIID_sub1_DUF3591	pirsf_TAF1_animal,pfam_TFIID_sub1_DUF3591,pfam_Bromodomain,pfam_TAF_II_230-bd,superfamily_Bromodomain,superfamily_TAF_II_230-bd,smart_Bromodomain,prints_Bromodomain,pfscan_Bromodomain	-	no_errors	TAF1	HGNC	ENSG00000147133				67	0	0	68	24	26.087
HDX	0	genome.wustl.edu	37	X	83724526	83724526	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	X	83724526	83724526	C	G	SNP	HDX	ENST00000297977	human	ensembl	74_37	-1	known	missense	c.205	p.A69P	0.754	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	-	no_errors	HDX	HGNC	ENSG00000165259				109	1	0.909091	88	29	24.7863
PTGFRN	0	genome.wustl.edu	37	1	117484649	117484649	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	1	117484649	117484649	C	-	DEL	PTGFRN	ENST00000393203	human	ensembl	74_37	+1	known	frame_shift_del	c.362	p.S123fs	0.999	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	-	no_errors	PTGFRN	HGNC	ENSG00000134247				104	0	0	94	17	15.3153
TAS1R3	0	genome.wustl.edu	37	1	1266787	1266787	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	1	1266787	1266787	C	-	DEL	TAS1R3	ENST00000339381	human	ensembl	74_37	+1	known	frame_shift_del	c.62	p.P22fs	0.567	NULL	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_GPCR_3_9-Cys_dom,superfamily_Peripla_BP_I,pfscan_GPCR_3_C,prints_GPCR_3	-	no_errors	TAS1R3	HGNC	ENSG00000169962				61	0	0	51	7	12.069
MXRA8	0	genome.wustl.edu	37	1	1290110	1290110	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	1	1290110	1290110	G	-	DEL	MXRA8	ENST00000445648	human	ensembl	74_37	-1	known	frame_shift_del	c.901	p.R301fs	0.000	NULL	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	-	no_errors	MXRA8	HGNC	ENSG00000162576				10	0	0	11	4	26.6667
SCNM1	0	genome.wustl.edu	37	1	151139074	151139074	+	RNA	DEL	T	T	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	1	151139074	151139074	T	-	DEL	SCNM1	ENST00000471039	human	ensembl	74_37	+1	putative	rna	NULL	NULL	0.045	-	-	-	no_errors	SCNM1	HGNC	ENSG00000163156				18	0	0	18	3	14.2857
LCE2B	0	genome.wustl.edu	37	1	152659638	152659638	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	1	152659638	152659638	G	-	DEL	LCE2B	ENST00000368780	human	ensembl	74_37	+1	known	frame_shift_del	c.319	p.G108fs	0.986	NULL	NULL	-	no_errors	LCE2B	HGNC	ENSG00000159455				175	0	0	156	11	6.58683
S100A8	0	genome.wustl.edu	37	1	153362605	153362605	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	1	153362605	153362605	T	-	DEL	S100A8	ENST00000368732	human	ensembl	74_37	-1	known	frame_shift_del	c.256	p.S86fs	0.242	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom	-	no_errors	S100A8	HGNC	ENSG00000143546				252	0	0	193	49	20.2479
ILF2	0	genome.wustl.edu	37	1	153634950	153634952	+	In_Frame_Del	DEL	CTT	CTT	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	CTT	CTT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	1	153634950	153634952	CTT	-	DEL	ILF2	ENST00000361891	human	ensembl	74_37	-1	known	in_frame_del	c.1095_1093	p.K365in_frame_del	1.000:1.000:1.000	NULL	pfam_DZF,smart_DZF,pfscan_2-5-oligoadenylate_synth_N	-	no_errors	ILF2	HGNC	ENSG00000143621				117	0	0	68	35	33.9806
NES	0	genome.wustl.edu	37	1	156640235	156640235	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	1	156640235	156640235	C	-	DEL	NES	ENST00000368223	human	ensembl	74_37	-1	known	frame_shift_del	c.3745	p.V1249fs	0.001	NULL	pfam_IF	-	no_errors	NES	HGNC	ENSG00000132688				351	1	0.284091	288	59	17.0029
NTRK1	0	genome.wustl.edu	37	1	156846308	156846308	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	1	156846308	156846308	C	-	DEL	NTRK1	ENST00000524377	human	ensembl	74_37	+1	known	frame_shift_del	c.1749	p.L585fs	0.997	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Cys-rich_flank_reg_C,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_Tyr_kinase_neurotrophic_rcpt_1,prints_Tyr_kinase_NGF_rcpt	-	no_errors	NTRK1	HGNC	ENSG00000198400				47	0	0	41	6	12.766
ALDH9A1	0	genome.wustl.edu	37	1	165634376	165634376	+	RNA	DEL	A	A	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	1	165634376	165634376	A	-	DEL	ALDH9A1	ENST00000463610	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	ALDH9A1	HGNC	ENSG00000143149				54	0	0	43	9	17.3077
GPR161	0	genome.wustl.edu	37	1	168054869	168054869	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	1	168054869	168054869	C	-	DEL	GPR161	ENST00000537209	human	ensembl	74_37	-1	known	frame_shift_del	c.1550	p.G517fs	0.000	NULL	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	-	no_errors	GPR161	HGNC	ENSG00000143147				265	0	0	187	28	13.0233
ENSG00000230260	0	genome.wustl.edu	37	1	197411573	197411573	+	RNA	DEL	A	A	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	1	197411573	197411573	A	-	DEL	ENSG00000230260	ENST00000422250	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	RP11-75C23.1	Clone_based_vega_gene	ENSG00000230260				26	0	0	11	9	45
CAMSAP2	0	genome.wustl.edu	37	1	200827019	200827020	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	1	200827019	200827020	-	A	INS	CAMSAP2	ENST00000236925	human	ensembl	74_37	+1	known	frame_shift_ins	c.4302_4303	p.M1436fs	1.000:1.000	pfam_CKK_domain,superfamily_PRC_barrel-like	pfam_CKK_domain,pfam_CAMSAP_CH,pfam_CH-domain,superfamily_PRC_barrel-like,superfamily_CH-domain	-	no_errors	CAMSAP2	HGNC	ENSG00000118200				165	0	0	124	24	16.2162
CAMSAP2	0	genome.wustl.edu	37	1	200827020	200827020	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	1	200827020	200827020	A	-	DEL	CAMSAP2	ENST00000236925	human	ensembl	74_37	+1	known	frame_shift_del	c.4303	p.M1437fs	1.000	pfam_CKK_domain,superfamily_PRC_barrel-like	pfam_CKK_domain,pfam_CAMSAP_CH,pfam_CH-domain,superfamily_PRC_barrel-like,superfamily_CH-domain	-	no_errors	CAMSAP2	HGNC	ENSG00000118200				165	0	0	105	43	29.0541
IGFN1	0	genome.wustl.edu	37	1	201185656	201185656	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	1	201185656	201185656	C	-	DEL	IGFN1	ENST00000335211	human	ensembl	74_37	+1	known	frame_shift_del	c.9370	p.P3125fs	0.996	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	IGFN1	HGNC	ENSG00000163395				43	0	0	25	4	13.7931
ATP2B4	0	genome.wustl.edu	37	1	203667346	203667346	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	1	203667346	203667346	C	-	DEL	ATP2B4	ENST00000357681	human	ensembl	74_37	+1	known	frame_shift_del	c.255	p.K88fs	0.997	pfam_ATPase_P-typ_cation-transptr_N,smart_ATPase_P-typ_cation-transptr_N	pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_cation-transptr_C,pfam_ATP_Ca_trans_C,pfam_HAD-like_dom,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_P-typ_cyto_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Ca-transp_plasma,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP2B4	HGNC	ENSG00000058668				90	0	0	73	15	17.0455
NFASC	0	genome.wustl.edu	37	1	204924033	204924033	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	1	204924033	204924033	C	-	DEL	NFASC	ENST00000367172	human	ensembl	74_37	+1	known	frame_shift_del	c.489	p.P165fs	1.000	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	NFASC	HGNC	ENSG00000163531				436	0	0	330	67	16.8766
LUZP1	0	genome.wustl.edu	37	1	23418659	23418660	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	1	23418659	23418660	-	C	INS	LUZP1	ENST00000302291	human	ensembl	74_37	-1	known	frame_shift_ins	c.2096_2095	p.A699fs	0.000:0.118	NULL	NULL	-	no_errors	LUZP1	HGNC	ENSG00000169641				697	0	0	581	189	24.5455
ARID4B	0	genome.wustl.edu	37	1	235345419	235345419	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	1	235345419	235345419	T	-	DEL	ARID4B	ENST00000264183	human	ensembl	74_37	-1	known	frame_shift_del	c.2815	p.T939fs	1.000	NULL	pfam_RBB1NT,pfam_ARID/BRIGHT_DNA-bd,pfam_Tudor-knot,superfamily_ARID/BRIGHT_DNA-bd,superfamily_Chromodomain-like,smart_Tudor,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID4B	HGNC	ENSG00000054267				192	0	0	150	55	26.8293
LYST	0	genome.wustl.edu	37	1	235973738	235973741	+	Frame_Shift_Del	DEL	CTTC	CTTC	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	CTTC	CTTC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	1	235973738	235973741	CTTC	-	DEL	LYST	ENST00000389793	human	ensembl	74_37	-1	known	frame_shift_del	c.380_377	p.G126fs	1.000:1.000:1.000:1.000	NULL	pfam_BEACH_dom,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	LYST	HGNC	ENSG00000143669				200	0	0	149	40	21.164
RYR2	0	genome.wustl.edu	37	1	237617790	237617790	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	1	237617790	237617790	C	-	DEL	RYR2	ENST00000360064	human	ensembl	74_37	+1	known	frame_shift_del	c.1386	p.P464fs	0.997	pfam_Ca-rel_channel	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ConA-like_lec_gl_sf,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_hand_dom,pfscan_MIR_motif	-	no_errors	RYR2	HGNC	ENSG00000198626				58	0	0	49	11	18.3333
FMN2	0	genome.wustl.edu	37	1	240492398	240492398	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	1	240492398	240492398	A	-	DEL	FMN2	ENST00000319653	human	ensembl	74_37	+1	known	frame_shift_del	c.4238	p.I1415fs	1.000	pfam_FH2_Formin,smart_FH2_Formin	pfam_FH2_Formin,pfam_Formin_homology_1,smart_FH2_Formin,pfscan_DEP_dom	-	no_errors	FMN2	HGNC	ENSG00000155816				109	0	0	78	26	25
OR2G2	0	genome.wustl.edu	37	1	247752266	247752266	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	1	247752266	247752266	T	-	DEL	OR2G2	ENST00000320065	human	ensembl	74_37	+1	known	frame_shift_del	c.605	p.F203fs	0.852	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2G2	HGNC	ENSG00000177489				162	0	0	141	8	5.36913
OR2W3	0	genome.wustl.edu	37	1	248059733	248059733	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	1	248059733	248059733	C	-	DEL	OR2W3	ENST00000360358	human	ensembl	74_37	+1	known	frame_shift_del	c.845	p.L284fs	0.057	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2W3	HGNC	ENSG00000238243				106	0	0	82	20	19.6078
OR2T4	0	genome.wustl.edu	37	1	248525681	248525681	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	1	248525681	248525681	A	-	DEL	OR2T4	ENST00000366475	human	ensembl	74_37	+1	known	frame_shift_del	c.799	p.K268fs	0.001	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2T4	HGNC	ENSG00000196944				180	1	0.552486	129	26	16.7742
ARID1A	0	genome.wustl.edu	37	1	27100176	27100176	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	1	27100176	27100176	C	-	DEL	ARID1A	ENST00000324856	human	ensembl	74_37	+1	known	frame_shift_del	c.3972	p.P1326fs	1.000	NULL	pfam_DUF3518,pfam_ARID/BRIGHT_DNA-bd,superfamily_ARID/BRIGHT_DNA-bd,superfamily_ARM-type_fold,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID1A	HGNC	ENSG00000117713				127	0	0	112	24	17.6471
ARID1A	0	genome.wustl.edu	37	1	27101117	27101117	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	1	27101117	27101117	C	-	DEL	ARID1A	ENST00000324856	human	ensembl	74_37	+1	known	frame_shift_del	c.4399	p.P1468fs	1.000	NULL	pfam_DUF3518,pfam_ARID/BRIGHT_DNA-bd,superfamily_ARID/BRIGHT_DNA-bd,superfamily_ARM-type_fold,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID1A	HGNC	ENSG00000117713				124	0	0	102	40	28.169
SDC3	0	genome.wustl.edu	37	1	31349751	31349752	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	1	31349751	31349752	-	C	INS	SDC3	ENST00000339394	human	ensembl	74_37	-1	known	frame_shift_ins	c.518_517	p.D173fs	0.817:0.762	pfam_Syndecan/Neurexin_dom	pfam_Syndecan/Neurexin_dom,smart_Neurexin-like	-	no_errors	SDC3	HGNC	ENSG00000162512				51	0	0	42	7	14.2857
A3GALT2	0	genome.wustl.edu	37	1	33777760	33777760	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	1	33777760	33777760	G	-	DEL	A3GALT2	ENST00000442999	human	ensembl	74_37	-1	novel	frame_shift_del	c.228	p.W77fs	0.999	pfam_Glyco_trans_6	pfam_Glyco_trans_6	-	no_errors	A3GALT2	HGNC	ENSG00000184389				40	0	0	22	6	21.4286
ZMYM6	0	genome.wustl.edu	37	1	35484912	35484912	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	1	35484912	35484912	A	-	DEL	ZMYM6	ENST00000317538	human	ensembl	74_37	-1	novel	frame_shift_del	c.470	p.L157fs	0.001	NULL	pfam_Znf_MYM,smart_TRASH_dom	-	no_errors	ZMYM6	HGNC	ENSG00000163867				145	1	0.684932	76	31	28.972
FHL3	0	genome.wustl.edu	37	1	38462977	38462977	+	RNA	DEL	T	T	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	1	38462977	38462977	T	-	DEL	FHL3	ENST00000475084	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	FHL3	HGNC	ENSG00000183386				72	0	0	49	24	32.8767
CHD5	0	genome.wustl.edu	37	1	6212502	6212502	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	1	6212502	6212502	C	-	DEL	CHD5	ENST00000262450	human	ensembl	74_37	-1	known	frame_shift_del	c.840	p.I281fs	0.813	NULL	pfam_CHD_C2,pfam_SNF2_N,pfam_DUF1086,pfam_CHD_N,pfam_DUF1087,pfam_Znf_PHD-finger,pfam_Chromo_domain,pfam_Helicase_C,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,superfamily_Chromodomain-like,superfamily_Znf_FYVE_PHD,superfamily_HMG_box_dom,smart_Znf_PHD,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Znf_PHD-finger,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD5	HGNC	ENSG00000116254				50	0	0	44	13	22.807
RPL22	0	genome.wustl.edu	37	1	6257785	6257785	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	1	6257785	6257785	T	-	DEL	RPL22	ENST00000234875	human	ensembl	74_37	-1	known	frame_shift_del	c.44	p.K15fs	1.000	pfam_Ribosomal_L22e	pfam_Ribosomal_L22e	-	no_errors	RPL22	HGNC	ENSG00000116251				82	0	0	46	35	43.2099
CWF19L1	0	genome.wustl.edu	37	10	101992924	101992925	+	RNA	DEL	AA	AA	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	10	101992924	101992925	AA	-	DEL	CWF19L1	ENST00000468709	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.167:0.180	-	-	-	no_errors	CWF19L1	HGNC	ENSG00000095485				99	0	0	74	24	24.4898
SH3PXD2A	0	genome.wustl.edu	37	10	105484097	105484098	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	10	105484097	105484098	-	G	INS	SH3PXD2A	ENST00000369774	human	ensembl	74_37	-1	known	frame_shift_ins	c.329_328	p.H110fs	1.000:0.989	pfam_Phox,superfamily_Phox,smart_Phox,pfscan_Phox	pfam_SH3_domain,pfam_SH3_2,pfam_Phox,superfamily_Phox,superfamily_SH3_domain,smart_Phox,smart_SH3_domain,pfscan_Phox,pfscan_SH3_domain	-	no_errors	SH3PXD2A	HGNC	ENSG00000107957				60	0	0	38	5	11.6279
TCF7L2	0	genome.wustl.edu	37	10	114925622	114925622	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	10	114925622	114925622	C	-	DEL	TCF7L2	ENST00000355995	human	ensembl	74_37	+1	known	frame_shift_del	c.1751	p.S586fs	0.054	NULL	pfam_CTNNB1-bd_N,pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	-	no_errors	TCF7L2	HGNC	ENSG00000148737				122	0	0	99	23	18.8525
CCDC3	0	genome.wustl.edu	37	10	12940431	12940431	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	10	12940431	12940431	G	-	DEL	CCDC3	ENST00000378825	human	ensembl	74_37	-1	known	frame_shift_del	c.798	p.Y267fs	0.964	NULL	NULL	-	no_errors	CCDC3	HGNC	ENSG00000151468				60	0	0	34	13	27.6596
CUBN	0	genome.wustl.edu	37	10	17085918	17085918	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	10	17085918	17085918	G	-	DEL	CUBN	ENST00000377833	human	ensembl	74_37	-1	known	frame_shift_del	c.3737	p.P1246fs	0.000	pfam_CUB_dom,superfamily_CUB_dom,smart_CUB_dom,pfscan_CUB_dom	pfam_CUB_dom,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,superfamily_CUB_dom,superfamily_Growth_fac_rcpt_N_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_CUB_dom,pfscan_CUB_dom,pfscan_EG-like_dom	-	no_errors	CUBN	HGNC	ENSG00000107611				143	0	0	109	19	14.8438
PITRM1	0	genome.wustl.edu	37	10	3205748	3205748	+	RNA	DEL	A	A	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	10	3205748	3205748	A	-	DEL	PITRM1	ENST00000488065	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	PITRM1	HGNC	ENSG00000107959				9	0	0	3	4	57.1429
ZNF503-AS2	0	genome.wustl.edu	37	10	77160768	77160769	+	RNA	INS	-	-	C			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	10	77160768	77160769	-	C	INS	ZNF503-AS2	ENST00000438638	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.123:0.000	-	-	-	no_errors	ZNF503-AS2	HGNC	ENSG00000237149				14	0	0	4	5	55.5556
KCNMA1	0	genome.wustl.edu	37	10	78729786	78729786	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	10	78729786	78729786	T	-	DEL	KCNMA1	ENST00000406533	human	ensembl	74_37	-1	known	frame_shift_del	c.2318	p.K773fs	1.000	prints_K_chnl_Ca-activ_BK_asu	pfam_K_chnl_Ca-activ_BK_asu,pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom,pfam_RCK_N,prints_K_chnl_Ca-activ_BK_asu,prints_K_chnl	-	no_errors	KCNMA1	HGNC	ENSG00000156113				91	0	0	78	20	20.4082
TAF3	0	genome.wustl.edu	37	10	8007107	8007107	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	10	8007107	8007107	A	-	DEL	TAF3	ENST00000344293	human	ensembl	74_37	+1	known	frame_shift_del	c.1634	p.D547fs	0.991	NULL	pfam_BTP,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,superfamily_Histone-fold,smart_BTP,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	TAF3	HGNC	ENSG00000165632				44	0	0	38	18	32.1429
WAPAL	0	genome.wustl.edu	37	10	88260442	88260443	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	10	88260442	88260443	-	T	INS	WAPAL	ENST00000298767	human	ensembl	74_37	-1	known	frame_shift_ins	c.558_557	p.N186fs	1.000:1.000	NULL	pfam_WAPL_prot,superfamily_ARM-type_fold	-	no_errors	WAPAL	HGNC	ENSG00000062650				165	0	0	135	20	12.9032
LARP4B	0	genome.wustl.edu	37	10	890939	890939	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	10	890939	890939	T	-	DEL	LARP4B	ENST00000316157	human	ensembl	74_37	-1	known	frame_shift_del	c.487	p.T163fs	1.000	pfam_Lupus_La_RNA-bd,smart_Lupus_La_RNA-bd,pfscan_Lupus_La_RNA-bd	pfam_Lupus_La_RNA-bd,smart_Lupus_La_RNA-bd,pfscan_Lupus_La_RNA-bd	-	no_errors	LARP4B	HGNC	ENSG00000107929				148	0	0	112	33	22.7586
KIF20B	0	genome.wustl.edu	37	10	91514321	91514321	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	10	91514321	91514321	A	-	DEL	KIF20B	ENST00000416354	human	ensembl	74_37	+1	known	frame_shift_del	c.4484	p.M1497fs	1.000	NULL	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF20B	HGNC	ENSG00000138182				59	0	0	47	15	24.1935
EXOC6	0	genome.wustl.edu	37	10	94654754	94654754	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	10	94654754	94654754	A	-	DEL	EXOC6	ENST00000371547	human	ensembl	74_37	+1	known	frame_shift_del	c.437	p.K147fs	1.000	pirsf_Sec15	pfam_Sec15,pirsf_Sec15	-	no_errors	EXOC6	HGNC	ENSG00000138190				198	0	0	138	48	25.8065
SLIT1	0	genome.wustl.edu	37	10	98799862	98799862	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	10	98799862	98799862	C	-	DEL	SLIT1	ENST00000266058	human	ensembl	74_37	-1	known	frame_shift_del	c.2180	p.G727fs	1.000	NULL	pfam_Leu-rich_rpt,pfam_Laminin_G,pfam_EG-like_dom,pfam_LRR-contain_N,pfam_Cys-rich_flank_reg_C,superfamily_ConA-like_lec_gl_sf,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_Fol_N,smart_Laminin_G,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	SLIT1	HGNC	ENSG00000187122				23	0	0	12	6	33.3333
MMP3	0	genome.wustl.edu	37	11	102713563	102713563	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	11	102713563	102713563	T	-	DEL	MMP3	ENST00000299855	human	ensembl	74_37	-1	known	frame_shift_del	c.190	p.I64fs	0.965	pirsf_Pept_M10A_Metazoans,pfam_Peptidoglycan-bd-like,superfamily_Peptidoglycan-bd-like	pirsf_Pept_M10A_Metazoans,pfam_Pept_M10_metallopeptidase,pfam_Hemopexin-like_repeat,pfam_Peptidoglycan-bd-like,superfamily_Hemopexin-like_dom,superfamily_Peptidoglycan-bd-like,smart_Peptidase_Metallo,smart_Hemopexin-like_repeat,prints_Pept_M10A	-	no_errors	MMP3	HGNC	ENSG00000149968				42	0	0	31	12	27.907
C11orf53	0	genome.wustl.edu	37	11	111154907	111154907	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	11	111154907	111154907	G	-	DEL	C11orf53	ENST00000280325	human	ensembl	74_37	+1	known	frame_shift_del	c.114	p.K40fs	0.981	NULL	NULL	-	no_errors	C11orf53	HGNC	ENSG00000150750				424	0	0	323	59	15.445
C11orf57	0	genome.wustl.edu	37	11	111953289	111953289	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	11	111953289	111953289	A	-	DEL	C11orf57	ENST00000393047	human	ensembl	74_37	+1	known	frame_shift_del	c.475	p.K161fs	1.000	NULL	NULL	-	no_errors	C11orf57	HGNC	ENSG00000150776				80	0	0	55	24	30.3797
DSCAML1	0	genome.wustl.edu	37	11	117389265	117389265	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	11	117389265	117389265	G	-	DEL	DSCAML1	ENST00000321322	human	ensembl	74_37	-1	known	frame_shift_del	c.1606	p.Q536fs	1.000	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	DSCAML1	HGNC	ENSG00000177103				119	0	0	91	26	22.2222
STT3A	0	genome.wustl.edu	37	11	125472795	125472797	+	In_Frame_Del	DEL	CTC	CTC	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	CTC	CTC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	11	125472795	125472797	CTC	-	DEL	STT3A	ENST00000392708	human	ensembl	74_37	+1	known	in_frame_del	c.369_371	p.S125in_frame_del	1.000:1.000:1.000	pfam_Oligo_trans_STT3	pfam_Oligo_trans_STT3	-	no_errors	STT3A	HGNC	ENSG00000134910				93	0	0	93	26	21.8487
ST3GAL4	0	genome.wustl.edu	37	11	126277512	126277512	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	11	126277512	126277512	C	-	DEL	ST3GAL4	ENST00000356132	human	ensembl	74_37	+1	known	frame_shift_del	c.342	p.K116fs	0.962	pfam_Glyco_trans_29,pirsf_Sialyl_trans	pfam_Glyco_trans_29,pirsf_Sialyl_trans	-	no_errors	ST3GAL4	HGNC	ENSG00000110080				397	0	0	366	40	9.85222
PRDM10	0	genome.wustl.edu	37	11	129772248	129772249	+	In_Frame_Ins	INS	-	-	TGG			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	11	129772248	129772249	-	TGG	INS	PRDM10	ENST00000358825	human	ensembl	74_37	-1	known	in_frame_ins	c.3443_3442	p.1148in_frame_insT	0.998:1.000	NULL	pfam_Znf_C2H2,pfam_Znf_C2H2_jaz,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	PRDM10	HGNC	ENSG00000170325				334	0	0	305	49	13.8418
BRSK2	0	genome.wustl.edu	37	11	1467138	1467139	+	Splice_Site	DEL	GT	GT	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	GT	GT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	11	1467138	1467139	GT	-	DEL	BRSK2	ENST00000382179	human	ensembl	74_37	+1	known	splice_site_del	c.1364+1_1364+1	e12+1	1.000:0.999	-	-	-	no_errors	BRSK2	HGNC	ENSG00000174672				55	0	0	58	9	13.4328
BRSK2	0	genome.wustl.edu	37	11	1478186	1478187	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	11	1478186	1478187	-	C	INS	BRSK2	ENST00000308230	human	ensembl	74_37	+1	known	frame_shift_ins	c.2007_2008	p.P672fs	0.999:0.998	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	BRSK2	HGNC	ENSG00000174672				25	0	0	24	5	17.2414
PAX6	0	genome.wustl.edu	37	11	31812317	31812317	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	11	31812317	31812317	G	-	DEL	PAX6	ENST00000379107	human	ensembl	74_37	-1	known	frame_shift_del	c.1166	p.P389fs	1.000	NULL	pfam_Paired_dom,pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Paired_dom,smart_Homeobox_dom,prints_Paired_dom,pfscan_Homeobox_dom,pfscan_Paired_dom	-	no_errors	PAX6	HGNC	ENSG00000007372				120	0	0	89	31	25.8333
PKP3	0	genome.wustl.edu	37	11	400055	400055	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	11	400055	400055	C	-	DEL	PKP3	ENST00000331563	human	ensembl	74_37	+1	known	frame_shift_del	c.1362	p.L456fs	0.998	superfamily_ARM-type_fold,smart_Armadillo	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	PKP3	HGNC	ENSG00000184363				27	0	0	19	8	29.6296
PHF21A	0	genome.wustl.edu	37	11	45955607	45955607	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	11	45955607	45955607	G	-	DEL	PHF21A	ENST00000257821	human	ensembl	74_37	-1	known	frame_shift_del	c.1958	p.P653fs	1.000	NULL	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	PHF21A	HGNC	ENSG00000135365				80	0	0	61	6	8.95522
PSMC3	0	genome.wustl.edu	37	11	47440696	47440696	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	11	47440696	47440696	C	-	DEL	PSMC3	ENST00000298852	human	ensembl	74_37	-1	known	frame_shift_del	c.1180	p.A394fs	1.000	superfamily_P-loop_NTPase,tigrfam_26S_Psome_P45	pfam_ATPase_AAA_core,pfam_ATPase_dyneun-rel_AAA,pfam_DNA_helicase_Holl-junc_RuvB_N,superfamily_P-loop_NTPase,smart_AAA+_ATPase,tigrfam_26S_Psome_P45	-	no_errors	PSMC3	HGNC	ENSG00000165916				115	0	0	119	24	16.7832
ENSG00000254815	0	genome.wustl.edu	37	11	558069	558069	+	RNA	DEL	G	G	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	11	558069	558069	G	-	DEL	ENSG00000254815	ENST00000527620	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	RP11-496I9.1	Clone_based_vega_gene	ENSG00000254815				58	0	0	71	6	7.79221
MYRF	0	genome.wustl.edu	37	11	61539013	61539013	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	11	61539013	61539013	C	-	DEL	MYRF	ENST00000278836	human	ensembl	74_37	+1	known	frame_shift_del	c.782	p.S264fs	1.000	NULL	pfam_NDT80_DNA-bd_dom,superfamily_p53-like_TF_DNA-bd	-	no_errors	MYRF	HGNC	ENSG00000124920				256	1	0.389105	208	47	18.4314
FIBP	0	genome.wustl.edu	37	11	65653077	65653077	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	11	65653077	65653077	T	-	DEL	FIBP	ENST00000338369	human	ensembl	74_37	-1	known	frame_shift_del	c.570	p.K190fs	1.000	pfam_FIBP	pfam_FIBP	-	no_errors	FIBP	HGNC	ENSG00000172500				240	0	0	144	59	29.064
INPPL1	0	genome.wustl.edu	37	11	71948748	71948748	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	11	71948748	71948748	C	-	DEL	INPPL1	ENST00000298229	human	ensembl	74_37	+1	known	frame_shift_del	c.3460	p.R1156fs	0.962	NULL	pfam_Endo/exonuclease/phosphatase,pfam_SH2,pfam_SAM_2,pfam_SAM_type1,superfamily_Endo/exonuclease/phosphatase,superfamily_SAM/pointed,smart_SH2,smart_IPPc,smart_SAM,pfscan_SAM,pfscan_SH2,prints_SH2	-	no_errors	INPPL1	HGNC	ENSG00000165458				34	0	0	40	7	14.8936
AMOTL1	0	genome.wustl.edu	37	11	94532688	94532688	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	11	94532688	94532688	C	-	DEL	AMOTL1	ENST00000433060	human	ensembl	74_37	+1	known	frame_shift_del	c.332	p.P112fs	1.000	NULL	pfam_Angiomotin_C,prints_Angiomotin	-	no_errors	AMOTL1	HGNC	ENSG00000166025				26	0	0	23	4	14.8148
SLC41A2	0	genome.wustl.edu	37	12	105198777	105198777	+	RNA	DEL	A	A	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	12	105198777	105198777	A	-	DEL	SLC41A2	ENST00000549713	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.849	-	-	-	no_errors	SLC41A2	HGNC	ENSG00000136052				45	0	0	53	14	20.8955
TMEM119	0	genome.wustl.edu	37	12	108985933	108985933	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	12	108985933	108985933	C	-	DEL	TMEM119	ENST00000392806	human	ensembl	74_37	-1	known	frame_shift_del	c.227	p.G76fs	0.532	NULL	NULL	-	no_errors	TMEM119	HGNC	ENSG00000183160				127	0	0	91	26	22.2222
ACACB	0	genome.wustl.edu	37	12	109671600	109671600	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	12	109671600	109671600	C	-	DEL	ACACB	ENST00000338432	human	ensembl	74_37	+1	known	frame_shift_del	c.4187	p.L1398fs	0.001	pfam_AcCoA_COase_cen	pfam_AcCoA_COase_cen,pfam_Carboxyl_trans,pfam_CbamoylP_synth_lsu-like_ATP-bd,pfam_CarbamoylP_synth_lsu_N,pfam_Biotin_COase_C,pfam_Biotin_lipoyl,superfamily_PreATP-grasp_dom,superfamily_Rudment_hybrid_motif,superfamily_Single_hybrid_motif,smart_Biotin_COase_C,pfscan_ATP-grasp,pfscan_Biotin_carboxylation_dom,pfscan_COA_CT_N,pfscan_COA_CT_C,pfscan_Biotin_lipoyl	-	no_errors	ACACB	HGNC	ENSG00000076555				190	0	0	115	20	14.8148
PPP1CC	0	genome.wustl.edu	37	12	111158948	111158948	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	12	111158948	111158948	T	-	DEL	PPP1CC	ENST00000340766	human	ensembl	74_37	-1	known	frame_shift_del	c.905	p.K302fs	1.000	NULL	pfam_PEstase_dom,smart_Ser/Thr-sp_prot-phosphatase,prints_Ser/Thr-sp_prot-phosphatase	-	no_errors	PPP1CC	HGNC	ENSG00000186298				307	0	0	199	85	29.9296
LRRC43	0	genome.wustl.edu	37	12	122685346	122685346	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	12	122685346	122685346	C	-	DEL	LRRC43	ENST00000339777	human	ensembl	74_37	+1	known	frame_shift_del	c.1674	p.I561fs	0.997	NULL	NULL	-	no_errors	LRRC43	HGNC	ENSG00000158113				93	0	0	82	9	9.89011
SBNO1	0	genome.wustl.edu	37	12	123794283	123794283	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	12	123794283	123794283	T	-	DEL	SBNO1	ENST00000420886	human	ensembl	74_37	-1	known	frame_shift_del	c.3416	p.N1139fs	1.000	NULL	pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,superfamily_Prismane-like	-	no_errors	SBNO1	HGNC	ENSG00000139697				151	1	0.657895	133	52	28.1081
PDE3A	0	genome.wustl.edu	37	12	20522723	20522723	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	12	20522723	20522723	G	-	DEL	PDE3A	ENST00000359062	human	ensembl	74_37	+1	known	frame_shift_del	c.505	p.E171fs	1.000	NULL	pfam_PDEase_catalytic_dom,smart_HD/PDEase_dom	-	no_errors	PDE3A	HGNC	ENSG00000172572				58	0	0	39	5	11.3636
CACNA1C	0	genome.wustl.edu	37	12	2714935	2714935	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	12	2714935	2714935	G	-	DEL	CACNA1C	ENST00000399634	human	ensembl	74_37	+1	known	frame_shift_del	c.3139	p.V1048fs	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCC_L_a1csu,prints_VDCCAlpha1,prints_VDCC_L_a1su	-	no_errors	CACNA1C	HGNC	ENSG00000151067				79	0	0	60	12	16.6667
TMTC1	0	genome.wustl.edu	37	12	29667467	29667467	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	12	29667467	29667467	A	-	DEL	TMTC1	ENST00000256062	human	ensembl	74_37	-1	known	frame_shift_del	c.2054	p.F685fs	1.000	smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	pfam_TPR_1,pfam_TPR_2,pfam_DUF1736,pfam_PIK-rel_kinase_FAT,pfam_TPR-3,smart_HAT,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TMTC1	HGNC	ENSG00000133687				137	0	0	114	6	5
KIF21A	0	genome.wustl.edu	37	12	39763594	39763594	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	12	39763594	39763594	T	-	DEL	KIF21A	ENST00000395670	human	ensembl	74_37	-1	known	frame_shift_del	c.387	p.K129fs	0.976	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	pfam_Kinesin_motor_dom,pfam_WD40_repeat,superfamily_P-loop_NTPase,superfamily_WD40_repeat_dom,superfamily_Prefoldin,superfamily_ARM-type_fold,smart_Kinesin_motor_dom,smart_WD40_repeat,pfscan_Kinesin_motor_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Kinesin_motor_dom	-	no_errors	KIF21A	HGNC	ENSG00000139116				70	0	0	60	18	23.0769
SCAF11	0	genome.wustl.edu	37	12	46315841	46315841	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	12	46315841	46315841	T	-	DEL	SCAF11	ENST00000369367	human	ensembl	74_37	-1	known	frame_shift_del	c.4382	p.N1461fs	0.985	NULL	smart_Znf_RING,pfscan_Znf_RING	-	no_errors	SCAF11	HGNC	ENSG00000139218				423	0	0	282	68	19.4286
KMT2D	0	genome.wustl.edu	37	12	49438211	49438211	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	12	49438211	49438211	T	-	DEL	KMT2D	ENST00000301067	human	ensembl	74_37	-1	known	frame_shift_del	c.5058	p.K1686fs	1.000	NULL	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_box_dom,smart_Znf_PHD,smart_Znf_RING,smart_HMG_box_dom,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	KMT2D	HGNC	ENSG00000167548				160	1	0.621118	107	37	25.6944
TARBP2	0	genome.wustl.edu	37	12	53898183	53898184	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	12	53898183	53898184	-	C	INS	TARBP2	ENST00000266987	human	ensembl	74_37	+1	known	frame_shift_ins	c.425_426	p.M145fs	0.999:0.994	NULL	pfam_dsRNA-bd_dom,smart_dsRNA-bd_dom,pfscan_dsRNA-bd_dom	-	no_errors	TARBP2	HGNC	ENSG00000139546				118	0	0	82	20	19.6078
OR6C4	0	genome.wustl.edu	37	12	55945307	55945307	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	12	55945307	55945307	T	-	DEL	OR6C4	ENST00000394256	human	ensembl	74_37	+1	known	frame_shift_del	c.297	p.F101fs	0.633	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR6C4	HGNC	ENSG00000179626				195	0	0	147	42	22.2222
SMARCC2	0	genome.wustl.edu	37	12	56559112	56559113	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	12	56559112	56559113	-	G	INS	SMARCC2	ENST00000267064	human	ensembl	74_37	-1	known	frame_shift_ins	c.3129_3128	p.G1044fs	1.000:1.000	NULL	pfam_SWIRM,pfam_SANT/Myb,superfamily_Homeodomain-like,superfamily_BRCT_dom,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_SANT/Myb,pfscan_SWIRM,pfscan_Myb-like_dom	-	no_errors	SMARCC2	HGNC	ENSG00000139613				117	1	0.847458	101	23	18.5484
SMARCC2	0	genome.wustl.edu	37	12	56559113	56559113	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	12	56559113	56559113	G	-	DEL	SMARCC2	ENST00000267064	human	ensembl	74_37	-1	known	frame_shift_del	c.3128	p.P1043fs	1.000	NULL	pfam_SWIRM,pfam_SANT/Myb,superfamily_Homeodomain-like,superfamily_BRCT_dom,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_SANT/Myb,pfscan_SWIRM,pfscan_Myb-like_dom	-	no_errors	SMARCC2	HGNC	ENSG00000139613				118	0	0	114	10	8.06452
DCTN2	0	genome.wustl.edu	37	12	57927827	57927827	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	12	57927827	57927827	C	-	DEL	DCTN2	ENST00000434715	human	ensembl	74_37	-1	known	frame_shift_del	c.593	p.G198fs	1.000	NULL	NULL	-	no_errors	DCTN2	HGNC	ENSG00000175203				104	0	0	87	25	22.3214
PTPRB	0	genome.wustl.edu	37	12	70949083	70949083	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	12	70949083	70949083	G	-	DEL	PTPRB	ENST00000334414	human	ensembl	74_37	-1	known	frame_shift_del	c.5000	p.P1667fs	1.000	superfamily_Fibronectin_type3,smart_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Ricin_B_lectin,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRB	HGNC	ENSG00000127329				45	0	0	26	10	27.7778
CEP290	0	genome.wustl.edu	37	12	88524079	88524079	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	12	88524079	88524079	T	-	DEL	CEP290	ENST00000309041	human	ensembl	74_37	-1	known	frame_shift_del	c.635	p.N212fs	1.000	NULL	NULL	-	no_errors	CEP290	HGNC	ENSG00000198707				261	0	0	185	43	18.8596
VEZT	0	genome.wustl.edu	37	12	95650969	95650969	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	12	95650969	95650969	T	-	DEL	VEZT	ENST00000436874	human	ensembl	74_37	+1	known	frame_shift_del	c.212	p.S74fs	0.065	NULL	NULL	-	no_errors	VEZT	HGNC	ENSG00000028203				30	0	0	32	7	17.9487
ENSG00000253094	0	genome.wustl.edu	37	13	23377306	23377308	+	RNA	DEL	ATT	ATT	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	ATT	ATT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	13	23377306	23377308	ATT	-	DEL	ENSG00000253094	ENST00000517285	human	ensembl	74_37	+1	novel	rna	NULL	NULL	1.000:1.000:1.000	-	-	-	no_errors	SNORD36	RFAM	ENSG00000253094				27	0	0	17	4	19.0476
RNASEH2B	0	genome.wustl.edu	37	13	51530587	51530587	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	13	51530587	51530587	A	-	DEL	RNASEH2B	ENST00000336617	human	ensembl	74_37	+1	known	frame_shift_del	c.916	p.I309fs	0.153	NULL	pfam_RNase_H2_suB	-	no_errors	RNASEH2B	HGNC	ENSG00000136104				10	0	0	5	4	44.4444
ARHGEF40	0	genome.wustl.edu	37	14	21546604	21546604	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	14	21546604	21546604	G	-	DEL	ARHGEF40	ENST00000298694	human	ensembl	74_37	+1	known	frame_shift_del	c.2203	p.A737fs	0.899	NULL	pfam_DH-domain,superfamily_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	ARHGEF40	HGNC	ENSG00000165801				185	1	0.537634	123	18	12.766
PPP2R3C	0	genome.wustl.edu	37	14	35577434	35577434	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	14	35577434	35577434	A	-	DEL	PPP2R3C	ENST00000261475	human	ensembl	74_37	-1	known	frame_shift_del	c.413	p.F138fs	1.000	NULL	NULL	-	no_errors	PPP2R3C	HGNC	ENSG00000092020				78	0	0	44	17	27.8689
PSMA6	0	genome.wustl.edu	37	14	35782216	35782216	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	14	35782216	35782216	A	-	DEL	PSMA6	ENST00000261479	human	ensembl	74_37	+1	known	frame_shift_del	c.539	p.V183fs	1.000	pfam_Proteasome_sua/b	pfam_Proteasome_sua/b,pfam_Proteasome_asu_N,smart_Proteasome_asu_N	-	no_errors	PSMA6	HGNC	ENSG00000100902				256	0	0	223	58	20.6406
PSMC6	0	genome.wustl.edu	37	14	53194281	53194281	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	14	53194281	53194281	A	-	DEL	PSMC6	ENST00000445930	human	ensembl	74_37	+1	known	frame_shift_del	c.1158	p.V388fs	0.976	superfamily_P-loop_NTPase,tigrfam_26S_Psome_P45	pfam_ATPase_AAA_core,pfam_ATPase_AAA-2,pfam_DNA_helicase_Holl-junc_RuvB_N,superfamily_P-loop_NTPase,smart_AAA+_ATPase,tigrfam_26S_Psome_P45	-	no_errors	PSMC6	HGNC	ENSG00000100519				115	0	0	80	35	30.4348
FERMT2	0	genome.wustl.edu	37	14	53386064	53386064	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	14	53386064	53386064	T	-	DEL	FERMT2	ENST00000343279	human	ensembl	74_37	-1	known	frame_shift_del	c.168	p.D57fs	1.000	NULL	pfam_FERM_central,pfam_Pleckstrin_homology,pfam_FERM_N,superfamily_FERM_central,smart_Band_41_domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	FERMT2	HGNC	ENSG00000073712				177	0	0	100	35	25.9259
TMEM30B	0	genome.wustl.edu	37	14	61747593	61747593	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	14	61747593	61747593	G	-	DEL	TMEM30B	ENST00000355702	human	ensembl	74_37	-1	known	frame_shift_del	c.273	p.C92fs	0.042	pfam_DUF284_TM_euk,pirsf_DUF284_TM_euk	pfam_DUF284_TM_euk,pirsf_DUF284_TM_euk	-	no_errors	TMEM30B	HGNC	ENSG00000182107				12	0	0	13	4	23.5294
C14orf169	0	genome.wustl.edu	37	14	73959864	73959864	+	RNA	DEL	A	A	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	14	73959864	73959864	A	-	DEL	C14orf169	ENST00000531973	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	C14orf169	HGNC	ENSG00000255242				96	0	0	72	22	23.4043
CCDC176	0	genome.wustl.edu	37	14	74531402	74531404	+	Frame_Shift_Del	DEL	AGA	AGA	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	AGA	AGA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	14	74531402	74531404	AGA	-	DEL	CCDC176	ENST00000394009	human	ensembl	74_37	+1	known	frame_shift_del	c.1590	p.*530fs	0.001	NULL	NULL	-	no_errors	CCDC176	HGNC	ENSG00000119636				213	1	0.46729	147	35	19.2308
SPRED1	0	genome.wustl.edu	37	15	38614463	38614463	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	15	38614463	38614463	A	-	DEL	SPRED1	ENST00000299084	human	ensembl	74_37	+1	known	frame_shift_del	c.229	p.D79fs	1.000	pfam_WH1/EVH1,smart_WH1/EVH1,pfscan_WH1/EVH1	pfam_Sprouty,pfam_WH1/EVH1,smart_WH1/EVH1,pfscan_WH1/EVH1	-	no_errors	SPRED1	HGNC	ENSG00000166068				134	1	0.740741	81	28	25.6881
MAP1A	0	genome.wustl.edu	37	15	43819858	43819858	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	15	43819858	43819858	C	-	DEL	MAP1A	ENST00000399453	human	ensembl	74_37	+1	known	frame_shift_del	c.6187	p.R2065fs	0.638	NULL	NULL	-	no_errors	MAP1A	HGNC	ENSG00000166963				88	0	0	91	10	9.90099
SLC12A1	0	genome.wustl.edu	37	15	48527143	48527143	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	15	48527143	48527143	T	-	DEL	SLC12A1	ENST00000380993	human	ensembl	74_37	+1	known	frame_shift_del	c.1157	p.F388fs	1.000	pfam_AA-permease/SLC12A_dom,tigrfam_Na/K/Cl_cotransptS	pfam_AA-permease/SLC12A_dom,pfam_AA_permease_N,prints_Na/K/Cl_cotranspt2,prints_Na/K/Cl_cotranspt,tigrfam_Na/K/Cl_cotransptS	-	no_errors	SLC12A1	HGNC	ENSG00000074803				134	0	0	86	30	25.8621
RNF111	0	genome.wustl.edu	37	15	59376343	59376343	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	15	59376343	59376343	C	-	DEL	RNF111	ENST00000434298	human	ensembl	74_37	+1	known	frame_shift_del	c.2340	p.P782fs	0.993	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF111	HGNC	ENSG00000157450				105	0	0	56	28	33.3333
ZNF609	0	genome.wustl.edu	37	15	64967247	64967247	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	15	64967247	64967247	A	-	DEL	ZNF609	ENST00000326648	human	ensembl	74_37	+1	known	frame_shift_del	c.2194	p.K734fs	1.000	NULL	pfscan_Znf_C2H2	-	no_errors	ZNF609	HGNC	ENSG00000180357				327	1	0.304878	248	68	21.519
CSPG4	0	genome.wustl.edu	37	15	75981454	75981454	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	15	75981454	75981454	G	-	DEL	CSPG4	ENST00000308508	human	ensembl	74_37	-1	known	frame_shift_del	c.1952	p.P651fs	0.005	NULL	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,pfscan_Laminin_G	-	no_errors	CSPG4	HGNC	ENSG00000173546				91	0	0	66	5	7.04225
SLCO3A1	0	genome.wustl.edu	37	15	92706441	92706441	+	RNA	DEL	A	A	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	15	92706441	92706441	A	-	DEL	SLCO3A1	ENST00000555549	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.813	-	-	-	no_errors	SLCO3A1	HGNC	ENSG00000176463				68	0	0	46	7	13.2075
ENSG00000261505	0	genome.wustl.edu	37	16	1370143	1370143	+	RNA	DEL	A	A	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	16	1370143	1370143	A	-	DEL	ENSG00000261505	ENST00000567829	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	LA16c-358B7.3	Clone_based_vega_gene	ENSG00000261505				38	0	0	28	13	31.7073
RRN3	0	genome.wustl.edu	37	16	15165070	15165070	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	16	15165070	15165070	T	-	DEL	RRN3	ENST00000198767	human	ensembl	74_37	-1	known	frame_shift_del	c.1167	p.K389fs	0.970	pfam_RNA_pol_I_trans_ini_fac_RRN3,superfamily_ARM-type_fold	pfam_RNA_pol_I_trans_ini_fac_RRN3,superfamily_ARM-type_fold	-	no_errors	RRN3	HGNC	ENSG00000085721				283	0	0	245	72	22.7129
FAM57B	0	genome.wustl.edu	37	16	30041821	30041821	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	16	30041821	30041821	C	-	DEL	FAM57B	ENST00000380495	human	ensembl	74_37	-1	known	frame_shift_del	c.28	p.V10fs	1.000	NULL	pfam_TLC-dom,smart_TLC-dom,pfscan_TLC-dom	-	no_errors	FAM57B	HGNC	ENSG00000149926				34	0	0	21	2	8.69565
MGRN1	0	genome.wustl.edu	37	16	4701983	4701983	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	16	4701983	4701983	C	-	DEL	MGRN1	ENST00000262370	human	ensembl	74_37	+1	known	frame_shift_del	c.227	p.H78fs	0.999	NULL	smart_Znf_RING,pfscan_Znf_RING	-	no_errors	MGRN1	HGNC	ENSG00000102858				179	0	0	100	29	22.4806
KCTD19	0	genome.wustl.edu	37	16	67325658	67325658	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	16	67325658	67325658	G	-	DEL	KCTD19	ENST00000304372	human	ensembl	74_37	-1	known	frame_shift_del	c.2301	p.V768fs	0.051	NULL	pfam_T1-type_BTB,superfamily_BTB/POZ_fold	-	no_errors	KCTD19	HGNC	ENSG00000168676				83	0	0	92	25	21.3675
MTSS1L	0	genome.wustl.edu	37	16	70698147	70698147	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	16	70698147	70698147	G	-	DEL	MTSS1L	ENST00000338779	human	ensembl	74_37	-1	known	frame_shift_del	c.1677	p.G560fs	0.001	NULL	pfam_IRSp53/MIM_homology_IMD	-	no_errors	MTSS1L	HGNC	ENSG00000132613				21	0	0	23	5	17.8571
AP1G1	0	genome.wustl.edu	37	16	71803440	71803440	+	Splice_Site	DEL	A	A	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	16	71803440	71803440	A	-	DEL	AP1G1	ENST00000423132	human	ensembl	74_37	-1	known	splice_site_del	c.643-1	e6-1	0.996	-	-	-	no_errors	AP1G1	HGNC	ENSG00000166747				37	0	0	15	9	37.5
PSMD7	0	genome.wustl.edu	37	16	74334988	74334988	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	16	74334988	74334988	T	-	DEL	PSMD7	ENST00000219313	human	ensembl	74_37	+1	known	frame_shift_del	c.205	p.L70fs	1.000	pfam_JAB_MPN_dom,smart_JAB_MPN_dom	pfam_JAB_MPN_dom,smart_JAB_MPN_dom	-	no_errors	PSMD7	HGNC	ENSG00000103035				74	0	0	72	15	17.2414
ZC3H18	0	genome.wustl.edu	37	16	88694459	88694459	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	16	88694459	88694459	C	-	DEL	ZC3H18	ENST00000301011	human	ensembl	74_37	+1	known	frame_shift_del	c.2401	p.Q804fs	0.269	NULL	smart_Znf_CCCH	-	no_errors	ZC3H18	HGNC	ENSG00000158545				306	0	0	244	48	16.4384
DNAH9	0	genome.wustl.edu	37	17	11511605	11511606	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	17	11511605	11511606	-	A	INS	DNAH9	ENST00000262442	human	ensembl	74_37	+1	known	frame_shift_ins	c.577_578	p.M195fs	0.999:0.995	NULL	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH9	HGNC	ENSG00000007174				199	0	0	175	23	11.6162
SSH2	0	genome.wustl.edu	37	17	27959374	27959375	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	17	27959374	27959375	-	G	INS	SSH2	ENST00000269033	human	ensembl	74_37	-1	known	frame_shift_ins	c.2757_2756	p.E920fs	0.164:0.003	NULL	pfam_Dual-sp_phosphatase_cat-dom,pfam_DEK_C,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Tyr/Dual-sp_Pase,pfscan_Dual-sp_phosphatase_subgr_cat	-	no_errors	SSH2	HGNC	ENSG00000141298				496	1	0.201207	404	127	23.9171
TAF15	0	genome.wustl.edu	37	17	34171886	34171886	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	17	34171886	34171886	G	-	DEL	TAF15	ENST00000588240	human	ensembl	74_37	+1	known	frame_shift_del	c.1583	p.G530fs	1.000	NULL	pfam_RRM_dom,pfam_Znf_RanBP2,smart_RRM_dom,smart_Znf_RanBP2,pfscan_Znf_RanBP2,pfscan_RRM_dom	-	no_errors	TAF15	HGNC	ENSG00000172660				128	0	0	95	37	28.0303
WNK4	0	genome.wustl.edu	37	17	40939870	40939870	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	17	40939870	40939870	G	-	DEL	WNK4	ENST00000246914	human	ensembl	74_37	+1	known	frame_shift_del	c.1816	p.V608fs	0.004	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Kinase_OSR1/WNK_CCT,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	WNK4	HGNC	ENSG00000126562				99	0	0	85	25	22.7273
VEZF1	0	genome.wustl.edu	37	17	56056586	56056587	+	In_Frame_Ins	INS	-	-	TGT			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	17	56056586	56056587	-	TGT	INS	VEZF1	ENST00000581208	human	ensembl	74_37	-1	known	in_frame_ins	c.1065_1064	p.355in_frame_insQ	0.961:0.995	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	VEZF1	HGNC	ENSG00000136451				262	0	0	220	32	12.6984
TXNDC17	0	genome.wustl.edu	37	17	6544415	6544417	+	In_Frame_Del	DEL	GAG	GAG	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	GAG	GAG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	17	6544415	6544417	GAG	-	DEL	TXNDC17	ENST00000250101	human	ensembl	74_37	+1	known	in_frame_del	c.13_15	p.E6in_frame_del	1.000:1.000:0.998	superfamily_Thioredoxin-like_fold	pfam_DUF953_thioredox,superfamily_Thioredoxin-like_fold	-	no_errors	TXNDC17	HGNC	ENSG00000129235				31	0	0	19	8	29.6296
SOX9	0	genome.wustl.edu	37	17	70119910	70119910	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	17	70119910	70119910	G	-	DEL	SOX9	ENST00000245479	human	ensembl	74_37	+1	known	frame_shift_del	c.912	p.V306fs	0.153	NULL	pfam_Sox_N,pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	-	no_errors	SOX9	HGNC	ENSG00000125398				68	0	0	60	5	7.69231
TP53	0	genome.wustl.edu	37	17	7577036	7577036	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	17	7577036	7577036	G	-	DEL	TP53	ENST00000269305	human	ensembl	74_37	-1	known	frame_shift_del	c.902	p.P301fs	0.137	NULL	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510				161	0	0	129	48	27.1186
P4HB	0	genome.wustl.edu	37	17	79803764	79803764	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	17	79803764	79803764	T	-	DEL	P4HB	ENST00000331483	human	ensembl	74_37	-1	known	frame_shift_del	c.1160	p.N387fs	1.000	pfam_Thioredoxin_domain,superfamily_Thioredoxin-like_fold,tigrfam_Prot_disulphide_isomerase,tigrfam_Disulphide_isomerase	pfam_Thioredoxin_domain,superfamily_Thioredoxin-like_fold,prints_Thioredoxin,tigrfam_Prot_disulphide_isomerase,tigrfam_Disulphide_isomerase	-	no_errors	P4HB	HGNC	ENSG00000185624				52	0	0	41	7	14.5833
ESCO1	0	genome.wustl.edu	37	18	19154750	19154750	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	18	19154750	19154750	T	-	DEL	ESCO1	ENST00000269214	human	ensembl	74_37	-1	known	frame_shift_del	c.55	p.S19fs	0.313	NULL	NULL	-	no_errors	ESCO1	HGNC	ENSG00000141446				139	0	0	96	36	27.2727
HRH4	0	genome.wustl.edu	37	18	22057478	22057478	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	18	22057478	22057478	A	-	DEL	HRH4	ENST00000256906	human	ensembl	74_37	+1	known	frame_shift_del	c.1125	p.K377fs	0.000	NULL	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Histamine_H4_rcpt,prints_GPCR_Rhodpsn	-	no_errors	HRH4	HGNC	ENSG00000134489				187	0	0	141	9	6
MOCOS	0	genome.wustl.edu	37	18	33836815	33836815	+	RNA	DEL	T	T	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	18	33836815	33836815	T	-	DEL	MOCOS	ENST00000588132	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	MOCOS	HGNC	ENSG00000075643				49	0	0	27	11	28.9474
TCF4	0	genome.wustl.edu	37	18	52895520	52895520	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	18	52895520	52895520	G	-	DEL	TCF4	ENST00000398339	human	ensembl	74_37	-1	known	frame_shift_del	c.2258	p.P753fs	1.000	superfamily_bHLH_dom	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	TCF4	HGNC	ENSG00000196628				134	0	0	125	42	25.1497
SERPINB10	0	genome.wustl.edu	37	18	61584739	61584739	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	18	61584739	61584739	A	-	DEL	SERPINB10	ENST00000238508	human	ensembl	74_37	+1	known	frame_shift_del	c.218	p.R76fs	0.998	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	-	no_errors	SERPINB10	HGNC	ENSG00000242550				25	0	0	11	5	31.25
EPOR	0	genome.wustl.edu	37	19	11488894	11488894	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	19	11488894	11488894	G	-	DEL	EPOR	ENST00000222139	human	ensembl	74_37	-1	known	frame_shift_del	c.1293	p.S432fs	0.758	pirsf_Erythropoietin_rcpt	pirsf_Erythropoietin_rcpt,pfam_Growth/epo_recpt_lig-bind,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	EPOR	HGNC	ENSG00000187266				80	0	0	36	17	32.0755
STK11	0	genome.wustl.edu	37	19	1207077	1207077	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	19	1207077	1207077	G	-	DEL	STK11	ENST00000326873	human	ensembl	74_37	+1	known	frame_shift_del	c.165	p.E57fs	0.951	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	STK11	HGNC	ENSG00000118046				58	0	0	59	8	11.9403
OR10H1	0	genome.wustl.edu	37	19	15917904	15917904	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	19	15917904	15917904	T	-	DEL	OR10H1	ENST00000334920	human	ensembl	74_37	-1	known	frame_shift_del	c.944	p.N315fs	0.001	NULL	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR10H1	HGNC	ENSG00000186723				121	0	0	118	36	23.3766
LRFN3	0	genome.wustl.edu	37	19	36431600	36431600	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	19	36431600	36431600	C	-	DEL	LRFN3	ENST00000246529	human	ensembl	74_37	+1	known	frame_shift_del	c.1273	p.P426fs	0.003	superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Leu-rich_rpt,pfam_Ig_I-set,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	LRFN3	HGNC	ENSG00000126243				121	0	0	132	11	7.69231
FCGBP	0	genome.wustl.edu	37	19	40357606	40357607	+	Frame_Shift_Del	DEL	AC	AC	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	AC	AC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	19	40357606	40357607	AC	-	DEL	FCGBP	ENST00000221347	human	ensembl	74_37	-1	known	frame_shift_del	c.15707_15706	p.V5236fs	0.188:0.175	pfam_VWF_type-D,smart_Fol_N,smart_VWF_type-D	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,smart_Fol_N,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_EG-like_dom,smart_VWF_C,smart_VWC_out	-	no_errors	FCGBP	HGNC	ENSG00000090920				106	0	0	74	13	14.9425
BAX	0	genome.wustl.edu	37	19	49458971	49458971	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	19	49458971	49458971	G	-	DEL	BAX	ENST00000293288	human	ensembl	74_37	+1	known	frame_shift_del	c.114	p.E41fs	0.588	NULL	pfam_Blc2_fam,pfscan_Bcl2-like,prints_Blc2_fam	-	no_errors	BAX	HGNC	ENSG00000087088				109	0	0	66	58	46.7742
RPS11	0	genome.wustl.edu	37	19	50000524	50000526	+	In_Frame_Del	DEL	AGG	AGG	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	AGG	AGG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	19	50000524	50000526	AGG	-	DEL	RPS11	ENST00000270625	human	ensembl	74_37	+1	known	in_frame_del	c.89_91	p.E31in_frame_del	1.000:1.000:1.000	NULL	pfam_Ribosomal_S17,superfamily_NA-bd_OB-fold,prints_Ribosomal_S17,tigrfam_Ribosomal_S17_arc-typ	-	no_errors	RPS11	HGNC	ENSG00000142534				91	0	0	82	11	11.828
POLD1	0	genome.wustl.edu	37	19	50905061	50905061	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	19	50905061	50905061	C	-	DEL	POLD1	ENST00000440232	human	ensembl	74_37	+1	known	frame_shift_del	c.343	p.P116fs	0.175	NULL	pfam_DNA-dir_DNA_pol_B_multi_dom,pfam_DNA-dir_DNA_pol_B_exonuc,superfamily_RNaseH-like_dom,smart_DNA-dir_DNA_pol_B,prints_DNA-dir_DNA_pol_B,tigrfam_DNA-dir_DNA_pol_B_pol2	-	no_errors	POLD1	HGNC	ENSG00000062822				114	0	0	82	14	14.5833
CACNG6	0	genome.wustl.edu	37	19	54515282	54515282	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	19	54515282	54515282	C	-	DEL	CACNG6	ENST00000252729	human	ensembl	74_37	+1	known	frame_shift_del	c.622	p.P209fs	0.007	NULL	prints_VDCC_g6su,prints_VDCC_gsu,prints_Claudin	-	no_errors	CACNG6	HGNC	ENSG00000130433				128	0	0	111	19	14.6154
SAFB2	0	genome.wustl.edu	37	19	5587282	5587282	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	19	5587282	5587282	G	-	DEL	SAFB2	ENST00000252542	human	ensembl	74_37	-1	known	frame_shift_del	c.2834	p.P945fs	0.100	NULL	pfam_RRM_dom,pfam_SAP_dom,smart_SAP_dom,smart_RRM_dom,pfscan_SAP_dom,pfscan_RRM_dom	-	no_errors	SAFB2	HGNC	ENSG00000130254				47	0	0	29	10	25.641
ZNF776	0	genome.wustl.edu	37	19	58264857	58264857	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	19	58264857	58264857	A	-	DEL	ZNF776	ENST00000317178	human	ensembl	74_37	+1	known	frame_shift_del	c.359	p.K122fs	0.001	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF776	HGNC	ENSG00000152443				128	0	0	98	20	16.9492
ALKBH7	0	genome.wustl.edu	37	19	6374970	6374970	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	19	6374970	6374970	C	-	DEL	ALKBH7	ENST00000245812	human	ensembl	74_37	+1	known	frame_shift_del	c.652	p.P219fs	0.669	NULL	NULL	-	no_errors	ALKBH7	HGNC	ENSG00000125652				90	0	0	69	6	8
ACVR2A	0	genome.wustl.edu	37	2	148683686	148683686	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	2	148683686	148683686	A	-	DEL	ACVR2A	ENST00000241416	human	ensembl	74_37	+1	known	frame_shift_del	c.1303	p.K437fs	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Activin_rcpt,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_TGFB_receptor	-	no_errors	ACVR2A	HGNC	ENSG00000121989				261	0	0	150	65	30.2326
NEB	0	genome.wustl.edu	37	2	152363488	152363488	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	2	152363488	152363488	T	-	DEL	NEB	ENST00000397345	human	ensembl	74_37	-1	known	frame_shift_del	c.23491	p.I7831fs	1.000	smart_Nebulin_35r-motif,pfscan_Nebulin_35r-motif	pfam_Nebulin_35r-motif,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,superfamily_Adhesion_dom,superfamily_6-PGluconate_DH_C-like,smart_Nebulin_35r-motif,smart_SH3_domain,pfscan_Nebulin_35r-motif,pfscan_SH3_domain,prints_Nebulin	-	no_errors	NEB	HGNC	ENSG00000183091				115	0	0	89	27	23.2759
COBLL1	0	genome.wustl.edu	37	2	165551296	165551296	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	2	165551296	165551296	A	-	DEL	COBLL1	ENST00000194871	human	ensembl	74_37	-1	known	frame_shift_del	c.2921	p.L974fs	0.972	NULL	pfam_Cordon-bleu_ubiquitin_domain,pfscan_WH2_dom	-	no_errors	COBLL1	HGNC	ENSG00000082438				86	0	0	58	21	26.5823
CALCRL	0	genome.wustl.edu	37	2	188217046	188217046	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	2	188217046	188217046	A	-	DEL	CALCRL	ENST00000392370	human	ensembl	74_37	-1	known	frame_shift_del	c.923	p.F308fs	1.000	pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	pfam_GPCR_2_secretin-like,pfam_GPCR_2_extracellular_dom,smart_GPCR_2_extracellular_dom,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GCPR_2_calcitonin_rcpt_fam,prints_GPCR_2_CGRP1_rcpt,prints_GPCR_2_secretin-like,prints_GPCR_2_calcitonin_rcpt	-	no_errors	CALCRL	HGNC	ENSG00000064989				40	0	0	34	9	20.9302
KCTD18	0	genome.wustl.edu	37	2	201369472	201369472	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	2	201369472	201369472	T	-	DEL	KCTD18	ENST00000359878	human	ensembl	74_37	-1	known	frame_shift_del	c.371	p.K124fs	1.000	NULL	pfam_T1-type_BTB,superfamily_BTB/POZ_fold	-	no_errors	KCTD18	HGNC	ENSG00000155729				62	0	0	40	14	25.9259
USP40	0	genome.wustl.edu	37	2	234394237	234394237	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	2	234394237	234394237	T	-	DEL	USP40	ENST00000450966	human	ensembl	74_37	-1	known	frame_shift_del	c.3477	p.K1159fs	1.000	NULL	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	-	no_errors	USP40	HGNC	ENSG00000085982				46	0	0	26	8	23.5294
SLC4A1AP	0	genome.wustl.edu	37	2	27887073	27887073	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	2	27887073	27887073	C	-	DEL	SLC4A1AP	ENST00000326019	human	ensembl	74_37	+1	known	frame_shift_del	c.454	p.Y154fs	0.744	NULL	pfam_FHA_dom,pfam_dsRNA-bd_dom,superfamily_SMAD_FHA_domain,smart_FHA_dom,pfscan_FHA_dom	-	no_errors	SLC4A1AP	HGNC	ENSG00000163798				102	0	0	81	12	12.9032
MSH6	0	genome.wustl.edu	37	2	48030640	48030640	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	2	48030640	48030640	C	-	DEL	MSH6	ENST00000234420	human	ensembl	74_37	+1	known	frame_shift_del	c.3254	p.F1088fs	0.003	pfam_DNA_mismatch_repair_MutS_C,superfamily_P-loop_NTPase,smart_DNA_mismatch_repair_MutS_core,pirsf_DNA_mismatch_repair_Msh6	pfam_DNA_mismatch_repair_MutS_C,pfam_DNA_mismatch_repair_MutS-lik_N,pfam_DNA_mismatch_repair_MutS_core,pfam_PWWP_dom,pfam_DNA_mismatch_repair_MutS_clamp,pfam_DNA_mmatch_repair_MutS_con_dom,superfamily_DNA_mismatch_repair_MutS_core,superfamily_P-loop_NTPase,superfamily_DNA_mismatch_repair_MutS_N,superfamily_DNA_mmatch_repair_MutS_con_dom,smart_PWWP_dom,smart_DNA_mismatch_repair_MutS_core,smart_DNA_mismatch_repair_MutS_C,pirsf_DNA_mismatch_repair_Msh6,pfscan_PWWP_dom	-	no_errors	MSH6	HGNC	ENSG00000116062				115	0	0	82	31	27.4336
GGCX	0	genome.wustl.edu	37	2	85780732	85780733	+	RNA	INS	-	-	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	2	85780732	85780733	-	T	INS	GGCX	ENST00000482662	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.001:0.004	-	-	-	no_errors	GGCX	HGNC	ENSG00000115486				21	0	0	22	5	18.5185
PTCD3	0	genome.wustl.edu	37	2	86352984	86352984	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	2	86352984	86352984	A	-	DEL	PTCD3	ENST00000254630	human	ensembl	74_37	+1	known	frame_shift_del	c.932	p.K312fs	0.802	NULL	NULL	-	no_errors	PTCD3	HGNC	ENSG00000132300				52	0	0	50	15	23.0769
PCED1A	0	genome.wustl.edu	37	20	2816204	2816204	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	20	2816204	2816204	C	-	DEL	PCED1A	ENST00000360652	human	ensembl	74_37	-1	known	frame_shift_del	c.1269	p.C425fs	0.001	NULL	NULL	-	no_errors	PCED1A	HGNC	ENSG00000132635				103	0	0	78	13	14.2857
ASXL1	0	genome.wustl.edu	37	20	31022442	31022442	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	20	31022442	31022442	G	-	DEL	ASXL1	ENST00000375687	human	ensembl	74_37	+1	known	frame_shift_del	c.1927	p.G645fs	1.000	NULL	NULL	-	no_errors	ASXL1	HGNC	ENSG00000171456				24	0	0	15	3	16.6667
DDX27	0	genome.wustl.edu	37	20	47860464	47860465	+	RNA	INS	-	-	A			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	20	47860464	47860465	-	A	INS	DDX27	ENST00000471144	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000:0.005	-	-	-	no_errors	DDX27	HGNC	ENSG00000124228				28	0	0	19	4	17.3913
ADNP	0	genome.wustl.edu	37	20	49508204	49508204	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	20	49508204	49508204	T	-	DEL	ADNP	ENST00000349014	human	ensembl	74_37	-1	known	frame_shift_del	c.3047	p.K1016fs	1.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	ADNP	HGNC	ENSG00000101126				200	0	0	111	82	42.487
UBE2G2	0	genome.wustl.edu	37	21	46191156	46191157	+	RNA	DEL	AA	AA	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	21	46191156	46191157	AA	-	DEL	UBE2G2	ENST00000477954	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001:0.000	-	-	-	no_errors	UBE2G2	HGNC	ENSG00000184787				18	0	0	5	5	50
CECR2	0	genome.wustl.edu	37	22	18022047	18022047	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	22	18022047	18022047	G	-	DEL	CECR2	ENST00000400573	human	ensembl	74_37	+1	novel	frame_shift_del	c.2149	p.A719fs	0.122	NULL	pfam_Bromodomain,superfamily_Bromodomain,smart_Bromodomain,prints_Bromodomain,pfscan_Bromodomain	-	no_errors	CECR2	HGNC	ENSG00000099954				46	0	0	40	8	16.6667
EIF3D	0	genome.wustl.edu	37	22	36907059	36907059	+	RNA	DEL	A	A	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	22	36907059	36907059	A	-	DEL	EIF3D	ENST00000478547	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.016	-	-	-	no_errors	EIF3D	HGNC	ENSG00000100353				67	0	0	48	16	25
ANKRD54	0	genome.wustl.edu	37	22	38228002	38228004	+	In_Frame_Del	DEL	AGG	AGG	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	AGG	AGG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	22	38228002	38228004	AGG	-	DEL	ANKRD54	ENST00000215941	human	ensembl	74_37	-1	known	in_frame_del	c.851_849	p.L284in_frame_del	1.000:1.000:0.994	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD54	HGNC	ENSG00000100124				39	0	0	21	5	19.2308
DDX17	0	genome.wustl.edu	37	22	38897210	38897211	+	Frame_Shift_Ins	INS	-	-	TT			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	22	38897210	38897211	-	TT	INS	DDX17	ENST00000396821	human	ensembl	74_37	-1	known	frame_shift_ins	c.363_362	p.W122fs	0.993:1.000	NULL	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX17	HGNC	ENSG00000100201				103	0	0	71	15	17.4419
TCF20	0	genome.wustl.edu	37	22	42564716	42564716	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	22	42564716	42564716	G	-	DEL	TCF20	ENST00000359486	human	ensembl	74_37	-1	known	frame_shift_del	c.5826	p.L1943fs	1.000	NULL	smart_Znf_PHD	-	no_errors	TCF20	HGNC	ENSG00000100207				29	0	0	26	5	16.129
TBC1D23	0	genome.wustl.edu	37	3	100039736	100039736	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	3	100039736	100039736	A	-	DEL	TBC1D23	ENST00000394144	human	ensembl	74_37	+1	known	frame_shift_del	c.1939	p.K649fs	1.000	NULL	pfam_Rab-GTPase-TBC_dom,pfam_Rhodanese-like_dom,superfamily_Rab-GTPase-TBC_dom,superfamily_Rhodanese-like_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom,pfscan_Rhodanese-like_dom	-	no_errors	TBC1D23	HGNC	ENSG00000036054				112	0	0	72	17	19.1011
FANCD2	0	genome.wustl.edu	37	3	10078012	10078012	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	3	10078012	10078012	T	-	DEL	FANCD2	ENST00000287647	human	ensembl	74_37	+1	known	frame_shift_del	c.480	p.F162fs	0.998	NULL	superfamily_ARM-type_fold	-	no_errors	FANCD2	HGNC	ENSG00000144554				86	0	0	139	18	11.465
ATP6V1A	0	genome.wustl.edu	37	3	113508677	113508680	+	Frame_Shift_Del	DEL	TATT	TATT	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	TATT	TATT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	3	113508677	113508680	TATT	-	DEL	ATP6V1A	ENST00000273398	human	ensembl	74_37	+1	known	frame_shift_del	c.978_981	p.Y328fs	1.000:1.000:1.000:1.000	pfam_ATPase_F1/V1/A1_a/bsu_nucl-bd,superfamily_P-loop_NTPase,tigrfam_ATPase_V1-cplx_asu	pfam_ATPase_F1/V1/A1_a/bsu_nucl-bd,pfam_ATPase_F1/V1/A1-cplx_a/bsu_C,pfam_ATPase_F1_a/bsu_N,superfamily_P-loop_NTPase,superfamily_ATPase_F1/V1/A1-cplx_a/bsu_C,superfamily_ATPase_F1_a/bsu_N,tigrfam_ATPase_V1-cplx_asu	-	no_errors	ATP6V1A	HGNC	ENSG00000114573				96	0	0	93	6	6.06061
ADCY5	0	genome.wustl.edu	37	3	123044231	123044231	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	3	123044231	123044231	C	-	DEL	ADCY5	ENST00000462833	human	ensembl	74_37	-1	known	frame_shift_del	c.2026	p.A676fs	0.749	pfam_Adenylate_cyclase-like	pfam_A/G_cyclase,pfam_Adenylate_cyclase-like,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY5	HGNC	ENSG00000173175				375	0	0	234	66	22
PPARG	0	genome.wustl.edu	37	3	12434182	12434182	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	3	12434182	12434182	A	-	DEL	PPARG	ENST00000287820	human	ensembl	74_37	+1	known	frame_shift_del	c.550	p.S186fs	1.000	pfam_Znf_hrmn_rcpt,smart_Znf_hrmn_rcpt,pfscan_Znf_hrmn_rcpt	pfam_Znf_hrmn_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_PPARgamma_N,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_1Cnucl_rcpt,prints_1Cnucl_rcpt_G,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt	-	no_errors	PPARG	HGNC	ENSG00000132170				118	0	0	110	21	16.0305
ZNF148	0	genome.wustl.edu	37	3	124952717	124952718	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	3	124952717	124952718	-	T	INS	ZNF148	ENST00000360647	human	ensembl	74_37	-1	known	frame_shift_ins	c.853_852	p.L284fs	1.000:1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF148	HGNC	ENSG00000163848				169	0	0	122	47	27.8107
MED12L	0	genome.wustl.edu	37	3	150845627	150845627	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	3	150845627	150845627	A	-	DEL	MED12L	ENST00000474524	human	ensembl	74_37	+1	known	frame_shift_del	c.412	p.E140fs	1.000	pfam_Mediator_Med12	pfam_Mediator_Med12_LCEWAV,pfam_Mediator_Med12,pfam_Mediator_Med12_catenin-bd	-	no_errors	MED12L	HGNC	ENSG00000144893				71	0	0	40	19	32.2034
ARHGEF26	0	genome.wustl.edu	37	3	153973130	153973130	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	3	153973130	153973130	G	-	DEL	ARHGEF26	ENST00000356448	human	ensembl	74_37	+1	known	frame_shift_del	c.2484	p.E830fs	0.998	pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	pfam_DH-domain,pfam_SH3_domain,pfam_SH3_2,pfam_Pleckstrin_homology,superfamily_DH-domain,superfamily_SH3_domain,smart_DH-domain,smart_Pleckstrin_homology,smart_SH3_domain,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_DH-domain	-	no_errors	ARHGEF26	HGNC	ENSG00000114790				121	0	0	88	16	15.3846
MB21D2	0	genome.wustl.edu	37	3	192516279	192516280	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	3	192516279	192516280	-	T	INS	MB21D2	ENST00000392452	human	ensembl	74_37	-1	known	frame_shift_ins	c.1372_1371	p.L457fs	1.000:1.000	NULL	pfam_Mab-21_dom	-	no_errors	MB21D2	HGNC	ENSG00000180611				210	1	0.473934	179	56	23.8298
SCN11A	0	genome.wustl.edu	37	3	38951623	38951623	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	3	38951623	38951623	A	-	DEL	SCN11A	ENST00000302328	human	ensembl	74_37	-1	known	frame_shift_del	c.1035	p.F345fs	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_Na_trans_assoc,prints_Na_channel_asu	-	no_errors	SCN11A	HGNC	ENSG00000168356				122	0	0	47	26	35.6164
WDR6	0	genome.wustl.edu	37	3	49051382	49051382	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	3	49051382	49051382	G	-	DEL	WDR6	ENST00000395474	human	ensembl	74_37	+1	known	frame_shift_del	c.2505	p.R838fs	0.007	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_Quino_amine_DH_bsu,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR6	HGNC	ENSG00000178252				86	0	0	35	7	16.6667
USP19	0	genome.wustl.edu	37	3	49153503	49153503	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	3	49153503	49153503	C	-	DEL	USP19	ENST00000398888	human	ensembl	74_37	-1	known	frame_shift_del	c.1145	p.G382fs	1.000	superfamily_HSP20-like_chaperone,pfscan_CS_dom	pfam_Peptidase_C19/C67,pfam_Znf_MYND,pfam_CS_dom,superfamily_HSP20-like_chaperone,pfscan_CS_dom,pfscan_Znf_MYND,pfscan_Peptidase_C19/C67	-	no_errors	USP19	HGNC	ENSG00000172046				72	0	0	31	9	22.5
DAG1	0	genome.wustl.edu	37	3	49568688	49568688	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	3	49568688	49568688	A	-	DEL	DAG1	ENST00000308775	human	ensembl	74_37	+1	known	frame_shift_del	c.744	p.K250fs	0.901	superfamily_Alpha-dystroglycan_domain_2	pfam_DAG1,superfamily_Alpha-dystroglycan_domain_2,superfamily_Cadherin-like,smart_Cadg	-	no_errors	DAG1	HGNC	ENSG00000173402				49	0	0	18	18	50
GLT8D1	0	genome.wustl.edu	37	3	52731827	52731828	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	3	52731827	52731828	-	C	INS	GLT8D1	ENST00000266014	human	ensembl	74_37	-1	known	frame_shift_ins	c.239_238	p.A80fs	1.000:1.000	pfam_Glyco_trans_8	pfam_Glyco_trans_8	-	no_errors	GLT8D1	HGNC	ENSG00000016864				139	0	0	64	19	22.8916
DNAH12	0	genome.wustl.edu	37	3	57509313	57509313	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	3	57509313	57509313	T	-	DEL	DNAH12	ENST00000351747	human	ensembl	74_37	-1	known	frame_shift_del	c.276	p.G93fs	1.000	NULL	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH12	HGNC	ENSG00000174844				19	0	0	30	9	23.0769
PHF17	0	genome.wustl.edu	37	4	129783052	129783052	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	4	129783052	129783052	C	-	DEL	PHF17	ENST00000226319	human	ensembl	74_37	+1	known	frame_shift_del	c.1175	p.R394fs	0.698	NULL	pfam_Enhancer_polycomb-like_N,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	PHF17	HGNC	ENSG00000077684				218	0	0	179	43	19.3694
PROM1	0	genome.wustl.edu	37	4	15995680	15995680	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	4	15995680	15995680	T	-	DEL	PROM1	ENST00000447510	human	ensembl	74_37	-1	known	frame_shift_del	c.1697	p.N566fs	0.415	pfam_Prominin	pfam_Prominin	-	no_errors	PROM1	HGNC	ENSG00000007062				184	1	0.540541	103	43	29.4521
CEP44	0	genome.wustl.edu	37	4	175220290	175220290	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	4	175220290	175220290	A	-	DEL	CEP44	ENST00000426172	human	ensembl	74_37	+1	known	frame_shift_del	c.18	p.R8fs	1.000	NULL	NULL	-	no_errors	CEP44	HGNC	ENSG00000164118				113	0	0	94	28	22.9508
SNX25	0	genome.wustl.edu	37	4	186272695	186272695	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	4	186272695	186272695	A	-	DEL	SNX25	ENST00000264694	human	ensembl	74_37	+1	known	frame_shift_del	c.1906	p.N638fs	1.000	NULL	pfam_Phox_assoc,pfam_Sorting_nexin_C,pfam_RGS_dom,pfam_Phox,superfamily_Regulat_G_prot_signal_superfam,superfamily_Phox,smart_PX_assoc_Snx13,smart_Regulat_G_prot_signal_superfam,smart_Phox,pfscan_Phox,pfscan_Phox_assoc,pfscan_Regulat_G_prot_signal_superfam	-	no_errors	SNX25	HGNC	ENSG00000109762				142	0	0	114	33	22.449
FAM193A	0	genome.wustl.edu	37	4	2698177	2698177	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	4	2698177	2698177	A	-	DEL	FAM193A	ENST00000324666	human	ensembl	74_37	+1	known	frame_shift_del	c.2491	p.M833fs	0.997	NULL	NULL	-	no_errors	FAM193A	HGNC	ENSG00000125386				117	0	0	94	40	29.8507
RGS12	0	genome.wustl.edu	37	4	3430399	3430399	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	4	3430399	3430399	A	-	DEL	RGS12	ENST00000344733	human	ensembl	74_37	+1	known	frame_shift_del	c.3526	p.K1178fs	1.000	NULL	pfam_Raf-like_ras-bd,pfam_RGS_dom,pfam_PDZ,pfam_GoLoco_motif,superfamily_Regulat_G_prot_signal_superfam,superfamily_PDZ,smart_PDZ,smart_PTB/PI_dom,smart_Regulat_G_prot_signal_superfam,smart_Raf-like_ras-bd,smart_GoLoco_motif,pfscan_GoLoco_motif,pfscan_PDZ,pfscan_PTB/PI_dom,pfscan_Raf-like_ras-bd,pfscan_Regulat_G_prot_signal_superfam,prints_RGS_dom	-	no_errors	RGS12	HGNC	ENSG00000159788				122	0	0	81	29	26.3636
KLHL5	0	genome.wustl.edu	37	4	39116879	39116879	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	4	39116879	39116879	G	-	DEL	KLHL5	ENST00000359687	human	ensembl	74_37	+1	known	frame_shift_del	c.2140	p.Y716fs	1.000	pfam_Kelch_1,pfam_Kelch_2,smart_Kelch_1	pfam_Kelch_1,pfam_Kelch_2,pfam_BACK,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pfscan_BTB/POZ-like	-	no_errors	KLHL5	HGNC	ENSG00000109790				105	0	0	69	17	19.7674
C4orf40	0	genome.wustl.edu	37	4	71024318	71024318	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	4	71024318	71024318	T	-	DEL	C4orf40	ENST00000344526	human	ensembl	74_37	+1	known	frame_shift_del	c.349	p.S119fs	0.000	NULL	NULL	-	no_errors	C4orf40	HGNC	ENSG00000187533				301	0	0	267	51	16.0377
SEC31A	0	genome.wustl.edu	37	4	83785565	83785565	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	4	83785565	83785565	T	-	DEL	SEC31A	ENST00000432794	human	ensembl	74_37	-1	known	frame_shift_del	c.1384	p.I462fs	0.985	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	SEC31A	HGNC	ENSG00000138674				87	0	0	79	21	21
WDFY3	0	genome.wustl.edu	37	4	85676452	85676453	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	4	85676452	85676453	-	A	INS	WDFY3	ENST00000295888	human	ensembl	74_37	-1	known	frame_shift_ins	c.5526_5525	p.L1842fs	0.378:0.996	NULL	pfam_BEACH_dom,pfam_Znf_FYVE,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_Znf_FYVE_PHD,superfamily_ConA-like_lec_gl_sf,superfamily_Cyclin-like,superfamily_ARM-type_fold,smart_WD40_repeat,smart_Znf_FYVE,pfscan_BEACH_dom,pfscan_Znf_FYVE-rel,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDFY3	HGNC	ENSG00000163625				116	0	0	82	22	21.1538
ARHGAP24	0	genome.wustl.edu	37	4	86916554	86916554	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	4	86916554	86916554	T	-	DEL	ARHGAP24	ENST00000395184	human	ensembl	74_37	+1	known	frame_shift_del	c.1747	p.F584fs	1.000	NULL	pfam_RhoGAP_dom,pfam_Pleckstrin_homology,superfamily_Rho_GTPase_activation_prot,smart_Pleckstrin_homology,smart_RhoGAP_dom,pfscan_Pleckstrin_homology,pfscan_RhoGAP_dom	-	no_errors	ARHGAP24	HGNC	ENSG00000138639				183	0	0	139	30	17.7515
DMXL1	0	genome.wustl.edu	37	5	118465026	118465026	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	5	118465026	118465026	T	-	DEL	DMXL1	ENST00000539542	human	ensembl	74_37	+1	known	frame_shift_del	c.1223	p.L410fs	1.000	superfamily_WD40_repeat_dom	pfam_Rav1p_C,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DMXL1	HGNC	ENSG00000172869				107	0	0	63	21	25
PCDHGC3	0	genome.wustl.edu	37	5	140857728	140857728	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	5	140857728	140857728	C	-	DEL	PCDHGC3	ENST00000308177	human	ensembl	74_37	+1	known	frame_shift_del	c.2045	p.R684fs	0.002	pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGC3	HGNC	ENSG00000240184				388	0	0	308	83	21.2276
TRIO	0	genome.wustl.edu	37	5	14477004	14477004	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	5	14477004	14477004	T	-	DEL	TRIO	ENST00000344204	human	ensembl	74_37	+1	known	frame_shift_del	c.6085	p.L2031fs	1.000	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_DH-domain	pfam_DH-domain,pfam_Prot_kinase_dom,pfam_Spectrin_repeat,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ig_I-set,pfam_SH3_domain,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_SH3_domain,superfamily_CRAL-TRIO_dom,superfamily_Capsid/spike_ssDNA_virus,smart_CRAL-TRIO_dom,smart_Spectrin/alpha-actinin,smart_DH-domain,smart_Pleckstrin_homology,smart_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_CRAL-TRIO_dom,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,pfscan_DH-domain	-	no_errors	TRIO	HGNC	ENSG00000038382				34	0	0	47	26	35.6164
RBM27	0	genome.wustl.edu	37	5	145647320	145647320	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	5	145647320	145647320	A	-	DEL	RBM27	ENST00000265271	human	ensembl	74_37	+1	known	frame_shift_del	c.2440	p.K816fs	1.000	NULL	pfam_PWI_dom,pfam_Znf_CCCH,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBM27	HGNC	ENSG00000091009				114	0	0	106	33	23.741
RBM22	0	genome.wustl.edu	37	5	150072483	150072483	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	5	150072483	150072483	G	-	DEL	RBM22	ENST00000199814	human	ensembl	74_37	-1	known	frame_shift_del	c.1106	p.P369fs	1.000	NULL	pfam_RRM_dom,superfamily_Znf_CCHC,smart_Znf_CCCH,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBM22	HGNC	ENSG00000086589				216	0	0	153	55	26.4423
RUFY1	0	genome.wustl.edu	37	5	179034632	179034634	+	In_Frame_Del	DEL	AGA	AGA	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	AGA	AGA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	5	179034632	179034634	AGA	-	DEL	RUFY1	ENST00000319449	human	ensembl	74_37	+1	known	in_frame_del	c.1955_1957	p.K653in_frame_del	1.000:0.824:1.000	pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,smart_Znf_FYVE,pfscan_Znf_FYVE-rel,pfscan_Znf_RING	pfam_Run,pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,superfamily_Prefoldin,smart_Run,smart_Znf_FYVE,pfscan_Run,pfscan_Znf_FYVE-rel,pfscan_Znf_RING	-	no_errors	RUFY1	HGNC	ENSG00000176783				146	0	0	96	22	18.6441
ZNF131	0	genome.wustl.edu	37	5	43173517	43173517	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	5	43173517	43173517	A	-	DEL	ZNF131	ENST00000399534	human	ensembl	74_37	+1	known	frame_shift_del	c.1152	p.G387fs	1.000	NULL	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZNF131	HGNC	ENSG00000172262				59	0	0	50	13	20.6349
WDR41	0	genome.wustl.edu	37	5	76728856	76728856	+	RNA	DEL	A	A	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	5	76728856	76728856	A	-	DEL	WDR41	ENST00000512033	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.004	-	-	-	no_errors	WDR41	HGNC	ENSG00000164253				38	0	0	27	10	27.027
CKMT2-AS1	0	genome.wustl.edu	37	5	80515513	80515513	+	RNA	DEL	T	T	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	5	80515513	80515513	T	-	DEL	CKMT2-AS1	ENST00000503483	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	CKMT2-AS1	HGNC	ENSG00000247572				93	0	0	84	34	28.8136
RASA1	0	genome.wustl.edu	37	5	86564685	86564686	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	5	86564685	86564686	-	C	INS	RASA1	ENST00000274376	human	ensembl	74_37	+1	known	frame_shift_ins	c.417_418	p.Y141fs	0.775:1.000	NULL	pfam_SH2,pfam_RasGAP,pfam_Pleckstrin_homology,pfam_SH3_domain,pfam_C2_dom,superfamily_Rho_GTPase_activation_prot,superfamily_C2_dom,smart_SH2,smart_SH3_domain,smart_Pleckstrin_homology,smart_C2_dom,smart_RasGAP,pfscan_C2_dom,pfscan_Pleckstrin_homology,pfscan_SH2,pfscan_SH3_domain,pfscan_RasGAP,prints_SH2	-	no_errors	RASA1	HGNC	ENSG00000145715				50	0	0	46	6	11.5385
HS3ST5	0	genome.wustl.edu	37	6	114378456	114378456	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	6	114378456	114378456	A	-	DEL	HS3ST5	ENST00000312719	human	ensembl	74_37	-1	known	frame_shift_del	c.1006	p.Y336fs	1.000	superfamily_P-loop_NTPase	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase	-	no_errors	HS3ST5	HGNC	ENSG00000249853				194	0	0	121	42	25.7669
MED23	0	genome.wustl.edu	37	6	131914220	131914222	+	In_Frame_Del	DEL	AGT	AGT	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	AGT	AGT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	6	131914220	131914222	AGT	-	DEL	MED23	ENST00000368058	human	ensembl	74_37	-1	known	in_frame_del	c.3342_3340	p.T1114in_frame_del	1.000:1.000:1.000	pfam_Mediator_Med23	pfam_Mediator_Med23	-	no_errors	MED23	HGNC	ENSG00000112282				112	0	0	90	23	20.354
JARID2	0	genome.wustl.edu	37	6	15511598	15511598	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	6	15511598	15511598	C	-	DEL	JARID2	ENST00000341776	human	ensembl	74_37	+1	known	frame_shift_del	c.2918	p.P974fs	1.000	pfam_JmjC_dom,smart_JmjC_dom,pfscan_JmjC_dom	pfam_JmjC_dom,pfam_ARID/BRIGHT_DNA-bd,pfam_TF_JmjN,pfam_Znf_C5HC2,superfamily_ARID/BRIGHT_DNA-bd,smart_TF_JmjN,smart_ARID/BRIGHT_DNA-bd,smart_JmjC_dom,pfscan_TF_JmjN,pfscan_JmjC_dom,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	JARID2	HGNC	ENSG00000008083				130	0	0	80	11	12.0879
ARID1B	0	genome.wustl.edu	37	6	157522190	157522190	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	6	157522190	157522190	C	-	DEL	ARID1B	ENST00000367148	human	ensembl	74_37	+1	known	frame_shift_del	c.4582	p.P1529fs	0.715	NULL	pfam_DUF3518,pfam_ARID/BRIGHT_DNA-bd,superfamily_ARID/BRIGHT_DNA-bd,superfamily_ARM-type_fold,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID1B	HGNC	ENSG00000049618				110	0	0	71	20	21.978
SYNJ2	0	genome.wustl.edu	37	6	158508009	158508009	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	6	158508009	158508009	C	-	DEL	SYNJ2	ENST00000355585	human	ensembl	74_37	+1	known	frame_shift_del	c.3331	p.P1113fs	1.000	NULL	pfam_Syja_N,pfam_DUF1866,pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase,smart_IPPc,pfscan_RRM_dom,pfscan_Syja_N	-	no_errors	SYNJ2	HGNC	ENSG00000078269				74	0	0	68	16	19.0476
SFT2D1	0	genome.wustl.edu	37	6	166739518	166739518	+	RNA	DEL	A	A	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	6	166739518	166739518	A	-	DEL	SFT2D1	ENST00000494682	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.007	-	-	-	no_errors	SFT2D1	HGNC	ENSG00000198818				28	0	0	26	10	27.7778
HLA-B	0	genome.wustl.edu	37	6	31322269	31322270	+	Frame_Shift_Del	DEL	GA	GA	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	GA	GA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	6	31322269	31322270	GA	-	DEL	HLA-B	ENST00000412585	human	ensembl	74_37	-1	known	frame_shift_del	c.1080_1079	p.L360fs	0.173:0.296	pfam_MHC_I_a_C	pfam_MHC_I_a_a1/a2,pfam_Ig_C1-set,pfam_MHC_I_a_C,superfamily_MHC_I/II-like_Ag-recog,smart_Ig_C1-set,pfscan_Ig-like_dom,prints_MHC_I_a	-	no_errors	HLA-B	HGNC	ENSG00000234745				99	0	0	40	22	35.4839
TCP11	0	genome.wustl.edu	37	6	35096881	35096882	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	6	35096881	35096882	-	G	INS	TCP11	ENST00000311875	human	ensembl	74_37	-1	known	frame_shift_ins	c.354_353	p.D119fs	0.988:1.000	pfam_Tcp11	pfam_Tcp11	-	no_errors	TCP11	HGNC	ENSG00000124678				108	0	0	50	19	27.5362
TBC1D22B	0	genome.wustl.edu	37	6	37250063	37250063	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	6	37250063	37250063	C	-	DEL	TBC1D22B	ENST00000373491	human	ensembl	74_37	+1	known	frame_shift_del	c.524	p.P177fs	0.996	NULL	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D22B	HGNC	ENSG00000065491				129	0	0	46	21	31.3433
PRICKLE4	0	genome.wustl.edu	37	6	41752759	41752759	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	6	41752759	41752759	G	-	DEL	PRICKLE4	ENST00000335515	human	ensembl	74_37	+1	known	frame_shift_del	c.327	p.V111fs	0.991	pfam_PET_domain	pfam_Znf_LIM,pfam_PET_domain,smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	PRICKLE4	HGNC	ENSG00000124593				196	0	0	71	27	27.551
TTBK1	0	genome.wustl.edu	37	6	43227330	43227330	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	6	43227330	43227330	C	-	DEL	TTBK1	ENST00000259750	human	ensembl	74_37	+1	known	frame_shift_del	c.1310	p.P439fs	0.671	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	TTBK1	HGNC	ENSG00000146216				35	0	0	11	2	15.3846
TDRD6	0	genome.wustl.edu	37	6	46660415	46660415	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	6	46660415	46660415	A	-	DEL	TDRD6	ENST00000316081	human	ensembl	74_37	+1	known	frame_shift_del	c.4550	p.M1520fs	0.009	pfam_Tudor	pfam_Tudor,smart_Tudor,pfscan_Tudor	-	no_errors	TDRD6	HGNC	ENSG00000180113				139	0	0	59	23	28.0488
COL19A1	0	genome.wustl.edu	37	6	70639396	70639396	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	6	70639396	70639396	T	-	DEL	COL19A1	ENST00000322773	human	ensembl	74_37	+1	known	frame_shift_del	c.470	p.F158fs	0.999	superfamily_ConA-like_lec_gl_sf,smart_Laminin_G	pfam_Collagen,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G	-	no_errors	COL19A1	HGNC	ENSG00000082293				140	0	0	75	31	29.2453
KIAA1009	0	genome.wustl.edu	37	6	84896233	84896233	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	6	84896233	84896233	A	-	DEL	KIAA1009	ENST00000403245	human	ensembl	74_37	-1	known	frame_shift_del	c.1218	p.F406fs	0.000	NULL	NULL	-	no_errors	KIAA1009	HGNC	ENSG00000135315				220	0	0	150	52	25.7426
ORC3	0	genome.wustl.edu	37	6	88318838	88318838	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	6	88318838	88318838	A	-	DEL	ORC3	ENST00000257789	human	ensembl	74_37	+1	known	frame_shift_del	c.604	p.R204fs	1.000	pfam_ORC3	pfam_ORC3	-	no_errors	ORC3	HGNC	ENSG00000135336				141	0	0	108	43	28.4768
GABRR2	0	genome.wustl.edu	37	6	89975427	89975429	+	In_Frame_Del	DEL	AAG	AAG	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	AAG	AAG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	6	89975427	89975429	AAG	-	DEL	GABRR2	ENST00000602399	human	ensembl	74_37	-1	known	in_frame_del	c.869_867	p.F289in_frame_del	1.000:1.000:1.000	superfamily_Neurotrans-gated_channel_TM,prints_GABAA_rcpt,prints_Neur_channel,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABAA_rcpt,prints_GABAAa_rho2_rcpt,prints_GABAAa_rho_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	GABRR2	HGNC	ENSG00000111886				96	0	0	112	6	5.08475
UFL1	0	genome.wustl.edu	37	6	96986656	96986656	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	6	96986656	96986656	C	-	DEL	UFL1	ENST00000369278	human	ensembl	74_37	+1	known	frame_shift_del	c.1128	p.R377fs	1.000	NULL	pfam_E3_UFM1_ligase_1	-	no_errors	UFL1	HGNC	ENSG00000014123				111	0	0	70	30	30
LRRC17	0	genome.wustl.edu	37	7	102584993	102584993	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	7	102584993	102584993	A	-	DEL	LRRC17	ENST00000339431	human	ensembl	74_37	+1	known	frame_shift_del	c.1265	p.K424fs	1.000	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	LRRC17	HGNC	ENSG00000128606				107	0	0	85	42	33.0709
KMT2C	0	genome.wustl.edu	37	7	151845524	151845524	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	7	151845524	151845524	A	-	DEL	KMT2C	ENST00000355193	human	ensembl	74_37	-1	known	frame_shift_del	c.13659	p.F4553fs	1.000	superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_Znf_RING	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_box_dom,smart_Znf_PHD,smart_Znf_RING,smart_HMG_box_dom,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_DHHC_palmitoyltrfase,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	KMT2C	HGNC	ENSG00000055609				246	0	0	149	57	27.6699
ABCB4	0	genome.wustl.edu	37	7	87032452	87032452	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	7	87032452	87032452	T	-	DEL	ABCB4	ENST00000265723	human	ensembl	74_37	-1	known	frame_shift_del	c.3653	p.K1218fs	1.000	pfam_ABC_ATPase_put,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,pfam_ABC_ATPase_put,pfam_Zeta_toxin_domain,superfamily_P-loop_NTPase,superfamily_ABC1_TM_dom,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom	-	no_errors	ABCB4	HGNC	ENSG00000005471				283	0	0	234	87	27.1028
SLC25A13	0	genome.wustl.edu	37	7	95751062	95751062	+	RNA	DEL	A	A	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	7	95751062	95751062	A	-	DEL	SLC25A13	ENST00000494085	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SLC25A13	HGNC	ENSG00000004864				173	0	0	158	46	22.549
LRP12	0	genome.wustl.edu	37	8	105509429	105509429	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	8	105509429	105509429	A	-	DEL	LRP12	ENST00000424843	human	ensembl	74_37	-1	known	frame_shift_del	c.1294	p.C432fs	1.000	pfam_LDrepeatLR_classA_rpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,pfscan_LDrepeatLR_classA_rpt	pfam_CUB_dom,pfam_LDrepeatLR_classA_rpt,superfamily_CUB_dom,superfamily_LDrepeatLR_classA_rpt,smart_CUB_dom,smart_LDrepeatLR_classA_rpt,pfscan_CUB_dom,pfscan_LDrepeatLR_classA_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP12	HGNC	ENSG00000147650				202	0	0	193	71	26.8939
EIF3E	0	genome.wustl.edu	37	8	109247236	109247236	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	8	109247236	109247236	A	-	DEL	EIF3E	ENST00000220849	human	ensembl	74_37	-1	known	frame_shift_del	c.462	p.F154fs	1.000	pirsf_eIF3e	pfam_eIF3e_N,pfam_PCI_dom,smart_PCI_dom,pirsf_eIF3e	-	no_errors	EIF3E	HGNC	ENSG00000104408				62	0	0	101	18	15.1261
MTMR9	0	genome.wustl.edu	37	8	11162509	11162509	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	8	11162509	11162509	A	-	DEL	MTMR9	ENST00000221086	human	ensembl	74_37	+1	known	frame_shift_del	c.577	p.N195fs	0.997	pfam_Myotubularin-like_Pase_dom	pfam_Myotubularin-like_Pase_dom	-	no_errors	MTMR9	HGNC	ENSG00000104643				88	0	0	74	17	18.6813
CSMD3	0	genome.wustl.edu	37	8	113241029	113241029	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	8	113241029	113241029	A	-	DEL	CSMD3	ENST00000297405	human	ensembl	74_37	-1	known	frame_shift_del	c.10920	p.F3640fs	1.000	NULL	pfam_CUB_dom,pfam_Sushi_SCR_CCP,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_CUB_dom,smart_Sushi_SCR_CCP,pfscan_CUB_dom,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD3	HGNC	ENSG00000164796				75	0	0	118	25	17.4825
TAF2	0	genome.wustl.edu	37	8	120797490	120797490	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	8	120797490	120797490	T	-	DEL	TAF2	ENST00000378164	human	ensembl	74_37	-1	known	frame_shift_del	c.1810	p.I604fs	1.000	NULL	pfam_Peptidase_M1_N,superfamily_ARM-type_fold	-	no_errors	TAF2	HGNC	ENSG00000064313				70	0	0	74	19	20.4301
MTSS1	0	genome.wustl.edu	37	8	125580781	125580782	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	8	125580781	125580782	-	A	INS	MTSS1	ENST00000524090	human	ensembl	74_37	-1	novel	frame_shift_ins	c.127_126	p.A42fs	0.050:0.028	NULL	pfam_IRSp53/MIM_homology_IMD,pfscan_WH2_dom	-	no_errors	MTSS1	HGNC	ENSG00000170873				52	0	0	53	51	49.0385
LZTS1	0	genome.wustl.edu	37	8	20110677	20110677	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	8	20110677	20110677	G	-	DEL	LZTS1	ENST00000265801	human	ensembl	74_37	-1	known	frame_shift_del	c.765	p.I256fs	0.250	NULL	NULL	-	no_errors	LZTS1	HGNC	ENSG00000061337				164	0	0	122	14	10.2941
KCTD9	0	genome.wustl.edu	37	8	25290078	25290078	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	8	25290078	25290078	T	-	DEL	KCTD9	ENST00000221200	human	ensembl	74_37	-1	known	frame_shift_del	c.995	p.N332fs	1.000	pfam_5peptide_repeat	pfam_5peptide_repeat,pfam_T1-type_BTB,pfam_K_channel_plant,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like	-	no_errors	KCTD9	HGNC	ENSG00000104756				232	0	0	157	52	24.8804
KCTD9	0	genome.wustl.edu	37	8	25293788	25293788	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	8	25293788	25293788	A	-	DEL	KCTD9	ENST00000221200	human	ensembl	74_37	-1	known	frame_shift_del	c.626	p.L209fs	1.000	NULL	pfam_5peptide_repeat,pfam_T1-type_BTB,pfam_K_channel_plant,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like	-	no_errors	KCTD9	HGNC	ENSG00000104756				206	0	0	193	58	23.1076
POLB	0	genome.wustl.edu	37	8	42213041	42213041	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	8	42213041	42213041	A	-	DEL	POLB	ENST00000265421	human	ensembl	74_37	+1	known	frame_shift_del	c.378	p.N128fs	0.999	pfam_DNA_pol_lambd_fingers_domain,superfamily_DNA_pol_lambd_fingers_domain,smart_DNA-dir_DNA_pol_X	pfam_DNA_pol_lambd_fingers_domain,superfamily_DNA_pol_b-like_N,superfamily_DNA_pol_lambd_fingers_domain,smart_DNA-dir_DNA_pol_X,smart_Hlx-hairpin-Hlx_DNA-bd_motif,prints_DNA_pol_X_beta-like,prints_DNA_pol_X	-	no_errors	POLB	HGNC	ENSG00000070501				83	0	0	59	20	25.3165
RP1	0	genome.wustl.edu	37	8	55538813	55538813	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	8	55538813	55538813	A	-	DEL	RP1	ENST00000220676	human	ensembl	74_37	+1	known	frame_shift_del	c.2371	p.R793fs	0.177	NULL	pfam_Doublecortin_dom,smart_Doublecortin_dom,pfscan_Doublecortin_dom	-	no_errors	RP1	HGNC	ENSG00000104237				67	0	0	85	13	13.2653
RPS20	0	genome.wustl.edu	37	8	56986697	56986697	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	8	56986697	56986697	T	-	DEL	RPS20	ENST00000009589	human	ensembl	74_37	-1	known	frame_shift_del	c.25	p.T9fs	1.000	NULL	pfam_Ribosomal_S10_dom,superfamily_Ribosomal_S10_dom,prints_Ribosomal_S10,tigrfam_Ribosomal_S10_euk/arc	-	no_errors	RPS20	HGNC	ENSG00000008988				143	0	0	171	32	15.7635
SLC7A13	0	genome.wustl.edu	37	8	87229783	87229784	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	8	87229783	87229784	-	A	INS	SLC7A13	ENST00000297524	human	ensembl	74_37	-1	known	frame_shift_ins	c.1095_1094	p.T366fs	0.000:0.003	pfam_AA-permease/SLC12A_dom,pirsf_AA/rel_permease1	pfam_AA-permease/SLC12A_dom,pirsf_AA/rel_permease1	-	no_errors	SLC7A13	HGNC	ENSG00000164893				96	0	0	62	50	44.6429
ESRP1	0	genome.wustl.edu	37	8	95686611	95686611	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	8	95686611	95686611	A	-	DEL	ESRP1	ENST00000433389	human	ensembl	74_37	+1	known	frame_shift_del	c.1528	p.N512fs	1.000	smart_RRM_dom	superfamily_RNaseH-like_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	ESRP1	HGNC	ENSG00000104413				114	0	0	62	70	53.0303
MSANTD3	0	genome.wustl.edu	37	9	103213137	103213137	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	9	103213137	103213137	A	-	DEL	MSANTD3	ENST00000395067	human	ensembl	74_37	+1	known	frame_shift_del	c.717	p.M241fs	1.000	NULL	NULL	-	no_errors	MSANTD3	HGNC	ENSG00000066697				87	0	0	52	19	26.7606
OR1L3	0	genome.wustl.edu	37	9	125437936	125437936	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	9	125437936	125437936	T	-	DEL	OR1L3	ENST00000304820	human	ensembl	74_37	+1	known	frame_shift_del	c.528	p.C179fs	0.947	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR1L3	HGNC	ENSG00000171481				403	0	0	318	106	25
SETX	0	genome.wustl.edu	37	9	135201742	135201742	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	9	135201742	135201742	A	-	DEL	SETX	ENST00000372169	human	ensembl	74_37	-1	known	frame_shift_del	c.5243	p.F1748fs	1.000	NULL	superfamily_P-loop_NTPase	-	no_errors	SETX	HGNC	ENSG00000107290				93	0	0	51	10	16.3934
AK8	0	genome.wustl.edu	37	9	135753607	135753607	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	9	135753607	135753607	G	-	DEL	AK8	ENST00000298545	human	ensembl	74_37	-1	known	frame_shift_del	c.36	p.E13fs	0.965	superfamily_cAMP_dep_PK_reg_su_I/II_a/b	pfam_Adenylate_kin,superfamily_P-loop_NTPase,superfamily_Adenylate_kinase_lid-dom,superfamily_cAMP_dep_PK_reg_su_I/II_a/b,prints_Adenylate_kin	-	no_errors	AK8	HGNC	ENSG00000165695				60	0	0	52	10	16.129
LINC00094	0	genome.wustl.edu	37	9	136899776	136899776	+	RNA	DEL	C	C	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	9	136899776	136899776	C	-	DEL	LINC00094	ENST00000605164	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	LINC00094	HGNC	ENSG00000235106				64	0	0	38	16	29.6296
WDR5	0	genome.wustl.edu	37	9	137019598	137019598	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	9	137019598	137019598	C	-	DEL	WDR5	ENST00000358625	human	ensembl	74_37	+1	known	frame_shift_del	c.642	p.V217fs	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,pfam_TIF_beta_prop-like,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	WDR5	HGNC	ENSG00000196363				512	0	0	356	89	20
EHMT1	0	genome.wustl.edu	37	9	140707505	140707506	+	Frame_Shift_Del	DEL	GA	GA	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	GA	GA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	9	140707505	140707506	GA	-	DEL	EHMT1	ENST00000460843	human	ensembl	74_37	+1	known	frame_shift_del	c.2915_2916	p.E973fs	1.000:0.218	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_SET_dom,pfam_Pre-SET_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Pre-SET_Zn-bd_sub,smart_SET_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SET_dom,pfscan_Pre-SET_dom,prints_Ankyrin_rpt	-	no_errors	EHMT1	HGNC	ENSG00000181090				143	0	0	114	26	18.5714
PSIP1	0	genome.wustl.edu	37	9	15472612	15472613	+	RNA	DEL	AA	AA	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	9	15472612	15472613	AA	-	DEL	PSIP1	ENST00000495873	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001:0.000	-	-	-	no_errors	PSIP1	HGNC	ENSG00000164985				114	1	0.869565	96	23	19.3277
RFX3	0	genome.wustl.edu	37	9	3277341	3277342	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	9	3277341	3277342	-	A	INS	RFX3	ENST00000382004	human	ensembl	74_37	-1	known	frame_shift_ins	c.972_971	p.L324fs	1.000:1.000	NULL	pfam_RFX1_trans_act,pfam_DNA-bd_RFX	-	no_errors	RFX3	HGNC	ENSG00000080298				173	0	0	115	35	23.3333
B4GALT1	0	genome.wustl.edu	37	9	33115994	33115994	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	9	33115994	33115994	A	-	DEL	B4GALT1	ENST00000379731	human	ensembl	74_37	-1	known	frame_shift_del	c.954	p.F318fs	1.000	pfam_Galactosyl_T_C,prints_Galactosyl_T	pfam_Galactosyl_T_C,prints_Galactosyl_T	-	no_errors	B4GALT1	HGNC	ENSG00000086062				93	0	0	80	30	27.2727
NAA35	0	genome.wustl.edu	37	9	88631578	88631578	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	9	88631578	88631578	A	-	DEL	NAA35	ENST00000361671	human	ensembl	74_37	+1	known	frame_shift_del	c.1693	p.K567fs	1.000	NULL	pfam_NatC_AcTrfase_Mak10	-	no_errors	NAA35	HGNC	ENSG00000135040				46	0	0	41	12	22.6415
SECISBP2	0	genome.wustl.edu	37	9	91972141	91972141	+	RNA	DEL	T	T	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	9	91972141	91972141	T	-	DEL	SECISBP2	ENST00000496597	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	SECISBP2	HGNC	ENSG00000187742				23	0	0	19	6	24
SLC35D2	0	genome.wustl.edu	37	9	99098997	99098998	+	Splice_Site	INS	-	-	C			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	9	99098997	99098998	-	C	INS	SLC35D2	ENST00000253270	human	ensembl	74_37	-1	known	splice_site_ins	c.752+1_752+1	e9+1	1.000:1.000	-	-	-	no_errors	SLC35D2	HGNC	ENSG00000130958				8	0	0	7	4	36.3636
SEPT6	0	genome.wustl.edu	37	X	118767398	118767398	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	X	118767398	118767398	T	-	DEL	SEPT6	ENST00000394617	human	ensembl	74_37	-1	known	frame_shift_del	c.1104	p.E369fs	1.000	pirsf_Septin	pfam_Cell_div_GTP-bd,superfamily_P-loop_NTPase,pirsf_Septin	-	no_errors	SEPT6	HGNC	ENSG00000125354				621	0	0	714	167	18.9557
XPNPEP2	0	genome.wustl.edu	37	X	128890517	128890518	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	X	128890517	128890518	-	G	INS	XPNPEP2	ENST00000371106	human	ensembl	74_37	+1	known	frame_shift_ins	c.1353_1354	p.Q453fs	0.887:0.999	pfam_Pept_M24_structural-domain,superfamily_Pept_M24_structural-domain	pfam_Pept_M24_structural-domain,pfam_Creatinase,superfamily_Pept_M24_structural-domain	-	no_errors	XPNPEP2	HGNC	ENSG00000122121				148	0	0	120	60	33.3333
OFD1	0	genome.wustl.edu	37	X	13787350	13787350	+	RNA	DEL	T	T	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	X	13787350	13787350	T	-	DEL	OFD1	ENST00000490265	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	OFD1	HGNC	ENSG00000046651				93	0	0	83	16	16.1616
SPANXN3	0	genome.wustl.edu	37	X	142605149	142605149	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	X	142605149	142605149	T	-	DEL	SPANXN3	ENST00000370503	human	ensembl	74_37	-1	known	frame_shift_del	c.71	p.N24fs	0.000	pfam_SPANX_prot	pfam_SPANX_prot	-	no_errors	SPANXN3	HGNC	ENSG00000189252				371	1	0.268817	349	87	19.9541
PLXNB3	0	genome.wustl.edu	37	X	153042691	153042691	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	X	153042691	153042691	G	-	DEL	PLXNB3	ENST00000538966	human	ensembl	74_37	+1	known	frame_shift_del	c.5025	p.V1678fs	0.849	pfam_Plexin_cytoplasmic_RasGAP_dom,superfamily_Rho_GTPase_activation_prot	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_IPT,pfam_Plexin_repeat,pfam_Semap_dom,superfamily_Semap_dom,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_IPT,pfscan_Semap_dom	-	no_errors	PLXNB3	HGNC	ENSG00000198753				13	0	0	18	3	14.2857
CTPS2	0	genome.wustl.edu	37	X	16720875	16720875	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	X	16720875	16720875	A	-	DEL	CTPS2	ENST00000359276	human	ensembl	74_37	-1	known	frame_shift_del	c.151	p.S51fs	1.000	pfam_CTP_synthase_N,superfamily_P-loop_NTPase,tigrfam_CTP_synthase	pfam_CTP_synthase_N,pfam_GATASE,pfam_Peptidase_C26,superfamily_P-loop_NTPase,tigrfam_CTP_synthase	-	no_errors	CTPS2	HGNC	ENSG00000047230				274	0	0	328	47	12.5333
SCML2	0	genome.wustl.edu	37	X	18265925	18265926	+	Frame_Shift_Del	DEL	GA	GA	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	GA	GA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	X	18265925	18265926	GA	-	DEL	SCML2	ENST00000251900	human	ensembl	74_37	-1	known	frame_shift_del	c.1534_1533	p.P512fs	0.998:0.977	NULL	pfam_Mbt,pfam_DUF3588,pfam_SAM_type1,superfamily_SAM/pointed,smart_Mbt,smart_SAM,pfscan_Mbt	-	no_errors	SCML2	HGNC	ENSG00000102098				162	0	0	175	32	15.4589
PPP2R3B	0	genome.wustl.edu	37	X	302052	302052	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	X	302052	302052	T	-	DEL	PPP2R3B	ENST00000390665	human	ensembl	74_37	-1	known	frame_shift_del	c.1165	p.T389fs	1.000	pfscan_EF_hand_dom	pfscan_EF_hand_dom	-	no_errors	PPP2R3B	HGNC	ENSG00000167393				311	0	0	334	75	18.3374
BCOR	0	genome.wustl.edu	37	X	39916480	39916480	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	X	39916480	39916480	C	-	DEL	BCOR	ENST00000378444	human	ensembl	74_37	-1	known	frame_shift_del	c.4523	p.G1508fs	1.000	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	BCOR	HGNC	ENSG00000183337				71	0	0	82	15	15.4639
DDX3X	0	genome.wustl.edu	37	X	41207100	41207100	+	RNA	DEL	T	T	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	X	41207100	41207100	T	-	DEL	DDX3X	ENST00000478993	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	DDX3X	HGNC	ENSG00000215301				15	0	0	13	7	35
KDM6A	0	genome.wustl.edu	37	X	44935952	44935952	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	X	44935952	44935952	A	-	DEL	KDM6A	ENST00000382899	human	ensembl	74_37	+1	known	frame_shift_del	c.2734	p.N913fs	1.000	NULL	pfam_JmjC_dom,pfam_TPR_1,smart_TPR_repeat,smart_JmjC_dom,pfscan_JmjC_dom,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	KDM6A	HGNC	ENSG00000147050				104	0	0	92	39	29.771
PIM2	0	genome.wustl.edu	37	X	48776072	48776073	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	X	48776072	48776073	-	G	INS	PIM2	ENST00000376509	human	ensembl	74_37	-1	known	frame_shift_ins	c.40_39	p.G13fs	0.007:0.004	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	PIM2	HGNC	ENSG00000102096				33	0	0	55	15	21.4286
PRICKLE3	0	genome.wustl.edu	37	X	49040116	49040117	+	Frame_Shift_Del	DEL	GT	GT	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	GT	GT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	X	49040116	49040117	GT	-	DEL	PRICKLE3	ENST00000536904	human	ensembl	74_37	-1	known	frame_shift_del	c.179_178	p.T60fs	0.149:0.119	NULL	pfam_Znf_LIM,pfam_PET_domain,smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	PRICKLE3	HGNC	ENSG00000012211				40	0	0	32	11	25.5814
FAAH2	0	genome.wustl.edu	37	X	57515386	57515387	+	RNA	INS	-	-	TG			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	X	57515386	57515387	-	TG	INS	FAAH2	ENST00000491179	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	FAAH2	HGNC	ENSG00000165591				83	0	0	74	20	21.2766
IL2RG	0	genome.wustl.edu	37	X	70327614	70327614	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	X	70327614	70327614	G	-	DEL	IL2RG	ENST00000374202	human	ensembl	74_37	-1	known	frame_shift_del	c.1082	p.P361fs	0.874	NULL	pfam_IL-6_rcpt_alpha-bd,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	IL2RG	HGNC	ENSG00000147168				54	0	0	39	24	38.0952
MAP2K4P1	0	genome.wustl.edu	37	X	72744763	72744763	+	RNA	DEL	T	T	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	X	72744763	72744763	T	-	DEL	MAP2K4P1	ENST00000602584	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.995	-	-	-	no_errors	MAP2K4P1	HGNC	ENSG00000269904				50	0	0	43	12	21.8182
PGK1	0	genome.wustl.edu	37	X	77380774	77380774	+	RNA	DEL	T	T	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	X	77380774	77380774	T	-	DEL	PGK1	ENST00000476531	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	PGK1	HGNC	ENSG00000102144				45	0	0	39	29	42.6471
HMGN5	0	genome.wustl.edu	37	X	80377176	80377177	+	RNA	DEL	AA	AA	-			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	X	80377176	80377177	AA	-	DEL	HMGN5	ENST00000491275	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	HMGN5	HGNC	ENSG00000198157				37	0	0	27	14	34.1463
PCDH19	0	genome.wustl.edu	37	X	99662504	99662505	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-4363-01A-01D-1158-08	TCGA-BR-4363-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b31fcaf7-ccd9-4320-a1ae-e59c4450386c	8814f33d-2e46-4c3f-9a03-0c1c2d9ec106	X	99662504	99662505	-	G	INS	PCDH19	ENST00000373034	human	ensembl	74_37	-1	known	frame_shift_ins	c.1092_1091	p.Y366fs	0.984:1.000	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH19	HGNC	ENSG00000165194				118	0	0	157	15	8.72093
