Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
OVGP1	0	genome.wustl.edu	37	1	111957318	111957318	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4366-01A-01D-1158-08	TCGA-BR-4366-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	eb78138d-9862-4c8e-ac8f-a5a2a31628cc	993d8925-5c1f-43d2-9000-0f6c8f754710	1	111957318	111957318	C	T	SNP	OVGP1	ENST00000369732	human	ensembl	74_37	-1	known	missense	c.1805	p.G602D	0.000	NULL	pfam_Glyco_hydro18cat,superfamily_Glycoside_hydrolase_SF,smart_Chitinase_II	-	no_errors	OVGP1	HGNC	ENSG00000085465				120	0	0	94	49	34.2657
ENSG00000232274	0	genome.wustl.edu	37	1	143209967	143209967	+	RNA	SNP	C	C	G			TCGA-BR-4366-01A-01D-1158-08	TCGA-BR-4366-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	eb78138d-9862-4c8e-ac8f-a5a2a31628cc	993d8925-5c1f-43d2-9000-0f6c8f754710	1	143209967	143209967	C	G	SNP	ENSG00000232274	ENST00000412204	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.967	-	-	-	no_errors	RP11-782C8.2	Clone_based_vega_gene	ENSG00000232274				49	0	0	35	13	27.0833
FMO5	0	genome.wustl.edu	37	1	146658693	146658693	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4366-01A-01D-1158-08	TCGA-BR-4366-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	eb78138d-9862-4c8e-ac8f-a5a2a31628cc	993d8925-5c1f-43d2-9000-0f6c8f754710	1	146658693	146658693	A	G	SNP	FMO5	ENST00000254090	human	ensembl	74_37	-1	known	missense	c.1388	p.L463S	0.029	pfam_Flavin_mOase-like,pirsf_DiMe-aniline_mOase	pfam_Flavin_mOase-like,pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,pirsf_DiMe-aniline_mOase,prints_Flavin_mOase,prints_Flavin_mOase_5,prints_Flavin_mOase_2,prints_Flavin_mOase_1	-	no_errors	FMO5	HGNC	ENSG00000131781				82	0	0	194	81	29.4545
MSTO1	0	genome.wustl.edu	37	1	155716694	155716694	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4366-01A-01D-1158-08	TCGA-BR-4366-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	eb78138d-9862-4c8e-ac8f-a5a2a31628cc	993d8925-5c1f-43d2-9000-0f6c8f754710	1	155716694	155716694	G	A	SNP	MSTO1	ENST00000538143	human	ensembl	74_37	+1	known	missense	c.398	p.R133Q	0.000	NULL	pfam_Misato_II_tubulin-like,superfamily_Tubulin_FtsZ_GTPase	-	no_errors	MSTO1	HGNC	ENSG00000125459				43	0	0	63	53	45.6897
HDGF	0	genome.wustl.edu	37	1	156721240	156721240	+	RNA	SNP	C	C	T			TCGA-BR-4366-01A-01D-1158-08	TCGA-BR-4366-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	eb78138d-9862-4c8e-ac8f-a5a2a31628cc	993d8925-5c1f-43d2-9000-0f6c8f754710	1	156721240	156721240	C	T	SNP	HDGF	ENST00000469145	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.984	-	-	-	no_errors	HDGF	HGNC	ENSG00000143321				29	0	0	52	13	20
SPTA1	0	genome.wustl.edu	37	1	158585084	158585084	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-4366-01A-01D-1158-08	TCGA-BR-4366-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	eb78138d-9862-4c8e-ac8f-a5a2a31628cc	993d8925-5c1f-43d2-9000-0f6c8f754710	1	158585084	158585084	C	G	SNP	SPTA1	ENST00000368147	human	ensembl	74_37	-1	known	missense	c.6710	p.G2237A	1.000	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_EF-hand_Ca_insen,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_Spectrin/alpha-actinin,smart_SH3_domain,pfscan_EF_hand_dom,pfscan_SH3_domain,prints_Spectrin_alpha_SH3	-	no_errors	SPTA1	HGNC	ENSG00000163554				305	0	0	630	76	10.7649
OR10J5	0	genome.wustl.edu	37	1	159505686	159505686	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4366-01A-01D-1158-08	TCGA-BR-4366-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	eb78138d-9862-4c8e-ac8f-a5a2a31628cc	993d8925-5c1f-43d2-9000-0f6c8f754710	1	159505686	159505686	T	G	SNP	OR10J5	ENST00000334857	human	ensembl	74_37	-1	known	missense	c.112	p.T38P	0.015	prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR10J5	HGNC	ENSG00000184155				209	0	0	390	60	13.3333
OLFML2B	0	genome.wustl.edu	37	1	161967674	161967674	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4366-01A-01D-1158-08	TCGA-BR-4366-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	eb78138d-9862-4c8e-ac8f-a5a2a31628cc	993d8925-5c1f-43d2-9000-0f6c8f754710	1	161967674	161967674	G	T	SNP	OLFML2B	ENST00000294794	human	ensembl	74_37	-1	known	missense	c.1415	p.T472K	0.000	NULL	pfam_Olfac-like,superfamily_NA-bd_OB-fold,smart_Olfac-like,pfscan_Olfac-like	-	no_errors	OLFML2B	HGNC	ENSG00000162745				248	2	0.8	428	143	25.0438
SLC19A2	0	genome.wustl.edu	37	1	169446719	169446719	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4366-01A-01D-1158-08	TCGA-BR-4366-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	eb78138d-9862-4c8e-ac8f-a5a2a31628cc	993d8925-5c1f-43d2-9000-0f6c8f754710	1	169446719	169446719	A	C	SNP	SLC19A2	ENST00000236137	human	ensembl	74_37	-1	known	missense	c.481	p.C161G	1.000	pfam_Folate_carrier,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pirsf_Folate_carrier	pfam_Folate_carrier,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pirsf_Folate_carrier	-	no_errors	SLC19A2	HGNC	ENSG00000117479				119	0	0	261	27	9.375
FMO2	0	genome.wustl.edu	37	1	171174749	171174749	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4366-01A-01D-1158-08	TCGA-BR-4366-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	eb78138d-9862-4c8e-ac8f-a5a2a31628cc	993d8925-5c1f-43d2-9000-0f6c8f754710	1	171174749	171174749	C	A	SNP	FMO2	ENST00000209929	human	ensembl	74_37	+1	known	missense	c.1159	p.R387S	1.000	pfam_Flavin_mOase-like,prints_Flavin_mOase	pfam_Flavin_mOase-like,pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,prints_Flavin_mOase,prints_Flavin_mOase_2,prints_Flavin_mOase_1,prints_Flavin_mOase_5	-	no_errors	FMO2	HGNC	ENSG00000094963				77	0	0	127	26	16.9935
FMO1	0	genome.wustl.edu	37	1	171251385	171251385	+	Silent	SNP	C	C	T			TCGA-BR-4366-01A-01D-1158-08	TCGA-BR-4366-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	eb78138d-9862-4c8e-ac8f-a5a2a31628cc	993d8925-5c1f-43d2-9000-0f6c8f754710	1	171251385	171251385	C	T	SNP	FMO1	ENST00000354841	human	ensembl	74_37	+1	known	silent	c.1096	p.L366	0.981	pfam_Flavin_mOase-like,pirsf_DiMe-aniline_mOase,prints_Flavin_mOase	pfam_Flavin_mOase-like,pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,pirsf_DiMe-aniline_mOase,prints_Flavin_mOase,prints_Flavin_mOase_1,prints_Flavin_mOase_2	-	no_errors	FMO1	HGNC	ENSG00000010932				136	1	0.729927	268	59	18.0428
TNN	0	genome.wustl.edu	37	1	175048588	175048588	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4366-01A-01D-1158-08	TCGA-BR-4366-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	eb78138d-9862-4c8e-ac8f-a5a2a31628cc	993d8925-5c1f-43d2-9000-0f6c8f754710	1	175048588	175048588	G	A	SNP	TNN	ENST00000239462	human	ensembl	74_37	+1	known	missense	c.529	p.G177S	1.000	pfam_EGF_extracell,smart_EG-like_dom	pfam_Fibronectin_type3,pfam_Fibrinogen_a/b/g_C_dom,pfam_EGF_extracell,superfamily_Fibrinogen_a/b/g_C_dom,superfamily_Fibronectin_type3,smart_EG-like_dom,smart_Fibronectin_type3,smart_Fibrinogen_a/b/g_C_dom,pfscan_Fibronectin_type3	-	no_errors	TNN	HGNC	ENSG00000120332				17	0	0	28	6	17.6471
HMCN1	0	genome.wustl.edu	37	1	185959498	185959498	+	Silent	SNP	A	A	G			TCGA-BR-4366-01A-01D-1158-08	TCGA-BR-4366-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	eb78138d-9862-4c8e-ac8f-a5a2a31628cc	993d8925-5c1f-43d2-9000-0f6c8f754710	1	185959498	185959498	A	G	SNP	HMCN1	ENST00000271588	human	ensembl	74_37	+1	known	silent	c.3300	p.P1100	0.120	pfam_Ig_I-set,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_G2_nidogen/fibulin_G2F,pfam_EGF-like_Ca-bd_dom,pfam_Thrombospondin_1_rpt,superfamily_GFP,superfamily_Thrombospondin_1_rpt,superfamily_Growth_fac_rcpt_N_dom,superfamily_Cadherin-like,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Thrombospondin_1_rpt,smart_G2_nidogen/fibulin_G2F,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_G2_nidogen/fibulin_G2F,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like_dom	-	no_errors	HMCN1	HGNC	ENSG00000143341				279	0	0	319	57	15.1596
MARK1	0	genome.wustl.edu	37	1	220825398	220825398	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4366-01A-01D-1158-08	TCGA-BR-4366-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	eb78138d-9862-4c8e-ac8f-a5a2a31628cc	993d8925-5c1f-43d2-9000-0f6c8f754710	1	220825398	220825398	C	T	SNP	MARK1	ENST00000366917	human	ensembl	74_37	+1	known	nonsense	c.1642	p.R548*	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_KA1_dom,superfamily_Kinase-like_dom,superfamily_KA1/Ssp2_C,superfamily_UBA-like,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_UBA/transl_elong_EF1B_N_euk,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Prot_kinase_dom	-	no_errors	MARK1	HGNC	ENSG00000116141				136	0	0	31	139	81.7647
TARBP1	0	genome.wustl.edu	37	1	234586217	234586217	+	Silent	SNP	T	T	C			TCGA-BR-4366-01A-01D-1158-08	TCGA-BR-4366-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	eb78138d-9862-4c8e-ac8f-a5a2a31628cc	993d8925-5c1f-43d2-9000-0f6c8f754710	1	234586217	234586217	T	C	SNP	TARBP1	ENST00000040877	human	ensembl	74_37	-1	novel	silent	c.1818	p.V606	0.485	NULL	pfam_SpoU_MeTrfase,superfamily_ARM-type_fold	-	no_errors	TARBP1	HGNC	ENSG00000059588				57	0	0	85	11	11.4583
OR2G6	0	genome.wustl.edu	37	1	248685614	248685614	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-4366-01A-01D-1158-08	TCGA-BR-4366-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	eb78138d-9862-4c8e-ac8f-a5a2a31628cc	993d8925-5c1f-43d2-9000-0f6c8f754710	1	248685614	248685614	C	G	SNP	OR2G6	ENST00000343414	human	ensembl	74_37	+1	known	missense	c.667	p.Q223E	0.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2G6	HGNC	ENSG00000188558				185	0	0	164	34	17.1717
ZFP69B	0	genome.wustl.edu	37	1	40928715	40928715	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4366-01A-01D-1158-08	TCGA-BR-4366-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	eb78138d-9862-4c8e-ac8f-a5a2a31628cc	993d8925-5c1f-43d2-9000-0f6c8f754710	1	40928715	40928715	T	A	SNP	ZFP69B	ENST00000411995	human	ensembl	74_37	+1	known	missense	c.1059	p.H353Q	0.790	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,pfam_Tscrpt_reg_SCAN,superfamily_Krueppel-associated_box,superfamily_Retrov_capsid_C,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZFP69B	HGNC	ENSG00000187801				63	0	0	98	35	26.3158
WDR78	0	genome.wustl.edu	37	1	67306240	67306240	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4366-01A-01D-1158-08	TCGA-BR-4366-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	eb78138d-9862-4c8e-ac8f-a5a2a31628cc	993d8925-5c1f-43d2-9000-0f6c8f754710	1	67306240	67306240	G	A	SNP	WDR78	ENST00000371026	human	ensembl	74_37	-1	known	missense	c.1406	p.P469L	0.997	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR78	HGNC	ENSG00000152763				192	0	0	119	77	39.2857
CAMTA1	0	genome.wustl.edu	37	1	7725165	7725165	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4366-01A-01D-1158-08	TCGA-BR-4366-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	eb78138d-9862-4c8e-ac8f-a5a2a31628cc	993d8925-5c1f-43d2-9000-0f6c8f754710	1	7725165	7725165	C	T	SNP	CAMTA1	ENST00000303635	human	ensembl	74_37	+1	known	missense	c.2558	p.S853L	1.000	NULL	pfam_CG-1_dom,pfam_IPT,pfam_IQ_motif_EF-hand-BS,superfamily_Ig_E-set,superfamily_Ankyrin_rpt-contain_dom,superfamily_P-loop_NTPase,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_IQ_motif_EF-hand-BS	-	no_errors	CAMTA1	HGNC	ENSG00000171735				105	0	0	33	64	65.9794
LPHN2	0	genome.wustl.edu	37	1	82372880	82372880	+	Silent	SNP	C	C	T			TCGA-BR-4366-01A-01D-1158-08	TCGA-BR-4366-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	eb78138d-9862-4c8e-ac8f-a5a2a31628cc	993d8925-5c1f-43d2-9000-0f6c8f754710	1	82372880	82372880	C	T	SNP	LPHN2	ENST00000370717	human	ensembl	74_37	+1	known	silent	c.252	p.C84	1.000	pfam_Lectin_gal-bd_dom,prints_GPCR_2_latrophilin,pfscan_Lectin_gal-bd_dom	pfam_GPCR_2_latrophilin_rcpt_C,pfam_Olfac-like,pfam_DUF3497,pfam_GPCR_2_secretin-like,pfam_Lectin_gal-bd_dom,pfam_GPS_dom,pfam_GPCR_2_extracellular_dom,smart_Olfac-like,smart_GPCR_2_extracellular_dom,smart_GPS_dom,prints_GPCR_2_latrophilin,prints_GPCR_2_secretin-like,pfscan_GPS_dom,pfscan_Lectin_gal-bd_dom,pfscan_Olfac-like,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like	-	no_errors	LPHN2	HGNC	ENSG00000117114				181	1	0.549451	139	66	32.1951
DPYD	0	genome.wustl.edu	37	1	98039509	98039509	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4366-01A-01D-1158-08	TCGA-BR-4366-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	eb78138d-9862-4c8e-ac8f-a5a2a31628cc	993d8925-5c1f-43d2-9000-0f6c8f754710	1	98039509	98039509	T	A	SNP	DPYD	ENST00000370192	human	ensembl	74_37	-1	known	missense	c.1146	p.E382D	1.000	pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD	pfam_Dihydroorotate_DH_1_2,pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,pfam_tRNA_hU_synthase,superfamily_Helical_ferredxn,prints_FAD_pyr_nucl-diS_OxRdtase,tigrfam_Dihydroorotate_DH	-	no_errors	DPYD	HGNC	ENSG00000188641				86	0	0	61	38	38.3838
ENTPD7	0	genome.wustl.edu	37	10	101421366	101421366	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-4366-01A-01D-1158-08	TCGA-BR-4366-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	eb78138d-9862-4c8e-ac8f-a5a2a31628cc	993d8925-5c1f-43d2-9000-0f6c8f754710	10	101421366	101421366	C	G	SNP	ENTPD7	ENST00000370489	human	ensembl	74_37	+1	known	missense	c.172	p.R58G	0.974	NULL	pfam_GDA1_CD39_NTPase	-	no_errors	ENTPD7	HGNC	ENSG00000198018				58	0	0	55	20	26.6667
ACTR1A	0	genome.wustl.edu	37	10	104241914	104241914	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4366-01A-01D-1158-08	TCGA-BR-4366-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	eb78138d-9862-4c8e-ac8f-a5a2a31628cc	993d8925-5c1f-43d2-9000-0f6c8f754710	10	104241914	104241914	G	A	SNP	ACTR1A	ENST00000369905	human	ensembl	74_37	-1	known	missense	c.769	p.R257W	1.000	pfam_Actin-related,smart_Actin-related	pfam_Actin-related,smart_Actin-related,prints_Actin-related	-	no_errors	ACTR1A	HGNC	ENSG00000138107				237	0	0	253	57	18.3871
PLEKHA1	0	genome.wustl.edu	37	10	124159876	124159876	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-4366-01A-01D-1158-08	TCGA-BR-4366-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	eb78138d-9862-4c8e-ac8f-a5a2a31628cc	993d8925-5c1f-43d2-9000-0f6c8f754710	10	124159876	124159876	G	C	SNP	PLEKHA1	ENST00000368990	human	ensembl	74_37	+1	known	missense	c.216	p.K72N	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	PLEKHA1	HGNC	ENSG00000107679				224	0	0	130	190	59.375
GPR26	0	genome.wustl.edu	37	10	125434364	125434364	+	Silent	SNP	G	G	A			TCGA-BR-4366-01A-01D-1158-08	TCGA-BR-4366-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	eb78138d-9862-4c8e-ac8f-a5a2a31628cc	993d8925-5c1f-43d2-9000-0f6c8f754710	10	125434364	125434364	G	A	SNP	GPR26	ENST00000284674	human	ensembl	74_37	+1	known	silent	c.699	p.K233	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srw,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srw,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	-	no_errors	GPR26	HGNC	ENSG00000154478				50	0	0	74	10	11.9048
ADAM8	0	genome.wustl.edu	37	10	135085440	135085440	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4366-01A-01D-1158-08	TCGA-BR-4366-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	eb78138d-9862-4c8e-ac8f-a5a2a31628cc	993d8925-5c1f-43d2-9000-0f6c8f754710	10	135085440	135085440	C	T	SNP	ADAM8	ENST00000445355	human	ensembl	74_37	-1	known	missense	c.976	p.V326M	0.000	pfam_Peptidase_M12B,pfscan_Peptidase_M12B	pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_Blood-coag_inhib_Disintegrin,pfam_ADAM_Cys-rich,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_EG-like_dom,pfscan_Peptidase_M12B,prints_Blood-coag_inhib_Disintegrin	-	no_errors	ADAM8	HGNC	ENSG00000151651				154	0	0	192	71	26.9962
ARMC3	0	genome.wustl.edu	37	10	23321810	23321810	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4366-01A-01D-1158-08	TCGA-BR-4366-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	eb78138d-9862-4c8e-ac8f-a5a2a31628cc	993d8925-5c1f-43d2-9000-0f6c8f754710	10	23321810	23321810	G	A	SNP	ARMC3	ENST00000298032	human	ensembl	74_37	+1	known	missense	c.2267	p.G756D	1.000	NULL	pfam_Armadillo,pfam_HEAT,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	ARMC3	HGNC	ENSG00000165309				49	0	0	7	18	72
PGR	0	genome.wustl.edu	37	11	100912766	100912766	+	Silent	SNP	G	G	C			TCGA-BR-4366-01A-01D-1158-08	TCGA-BR-4366-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	eb78138d-9862-4c8e-ac8f-a5a2a31628cc	993d8925-5c1f-43d2-9000-0f6c8f754710	11	100912766	100912766	G	C	SNP	PGR	ENST00000325455	human	ensembl	74_37	-1	known	silent	c.2556	p.L852	1.000	pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Nucl_hrmn_rcpt_lig-bd_core	pfam_Progest_rcpt,pfam_Znf_hrmn_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Progest_rcpt,prints_Znf_hrmn_rcpt,prints_Str_hrmn_rcpt	-	no_errors	PGR	HGNC	ENSG00000082175				103	0	0	67	32	32.3232
OR8B12	0	genome.wustl.edu	37	11	124413458	124413458	+	Silent	SNP	C	C	A			TCGA-BR-4366-01A-01D-1158-08	TCGA-BR-4366-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	eb78138d-9862-4c8e-ac8f-a5a2a31628cc	993d8925-5c1f-43d2-9000-0f6c8f754710	11	124413458	124413458	C	A	SNP	OR8B12	ENST00000306842	human	ensembl	74_37	-1	known	silent	c.93	p.L31	0.004	NULL	pfam_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	OR8B12	HGNC	ENSG00000170953				136	0	0	96	47	32.8671
QSER1	0	genome.wustl.edu	37	11	32975670	32975670	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4366-01A-01D-1158-08	TCGA-BR-4366-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	eb78138d-9862-4c8e-ac8f-a5a2a31628cc	993d8925-5c1f-43d2-9000-0f6c8f754710	11	32975670	32975670	A	G	SNP	QSER1	ENST00000399302	human	ensembl	74_37	+1	known	missense	c.4058	p.Q1353R	1.000	NULL	NULL	-	no_errors	QSER1	HGNC	ENSG00000060749				103	0	0	61	51	45.5357
CAPRIN1	0	genome.wustl.edu	37	11	34107866	34107866	+	Silent	SNP	T	T	C			TCGA-BR-4366-01A-01D-1158-08	TCGA-BR-4366-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	eb78138d-9862-4c8e-ac8f-a5a2a31628cc	993d8925-5c1f-43d2-9000-0f6c8f754710	11	34107866	34107866	T	C	SNP	CAPRIN1	ENST00000341394	human	ensembl	74_37	+1	known	silent	c.1137	p.D379	0.993	pfam_Caprin-1_C	pfam_Caprin-1_C	-	no_errors	CAPRIN1	HGNC	ENSG00000135387				80	0	0	98	15	13.2743
HRASLS5	0	genome.wustl.edu	37	11	63233831	63233831	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-4366-01A-01D-1158-08	TCGA-BR-4366-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	eb78138d-9862-4c8e-ac8f-a5a2a31628cc	993d8925-5c1f-43d2-9000-0f6c8f754710	11	63233831	63233831	C	G	SNP	HRASLS5	ENST00000301790	human	ensembl	74_37	-1	known	missense	c.498	p.E166D	0.722	NULL	pfam_LRAT-like_dom	-	no_errors	HRASLS5	HGNC	ENSG00000168004				50	0	0	38	23	37.7049
CLEC2B	0	genome.wustl.edu	37	12	10005899	10005899	+	Nonstop_Mutation	SNP	T	T	G			TCGA-BR-4366-01A-01D-1158-08	TCGA-BR-4366-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	eb78138d-9862-4c8e-ac8f-a5a2a31628cc	993d8925-5c1f-43d2-9000-0f6c8f754710	12	10005899	10005899	T	G	SNP	CLEC2B	ENST00000228438	human	ensembl	74_37	-1	known	nonstop	c.450	p.*150Y	0.000	NULL	pfam_C-type_lectin,pfam_Herpes_UL45-like,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	-	no_errors	CLEC2B	HGNC	ENSG00000110852				72	0	0	21	12	36.3636
ALDH1L2	0	genome.wustl.edu	37	12	105433501	105433501	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4366-01A-01D-1158-08	TCGA-BR-4366-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	eb78138d-9862-4c8e-ac8f-a5a2a31628cc	993d8925-5c1f-43d2-9000-0f6c8f754710	12	105433501	105433501	T	G	SNP	ALDH1L2	ENST00000258494	human	ensembl	74_37	-1	known	missense	c.2035	p.I679L	1.000	pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH,pirsf_10_FTHF_DH	pfam_Aldehyde_DH_dom,pfam_Formyl_transf_N,pfam_Formyl_trans_C,pfam_Acyl_carrier_prot-like,superfamily_Ald_DH/histidinol_DH,superfamily_Formyl_transf_N,superfamily_Formyl_transferase_C-like,superfamily_Acyl_carrier_prot-like,pirsf_10_FTHF_DH,pfscan_Acyl_carrier_prot-like	-	no_errors	ALDH1L2	HGNC	ENSG00000136010				128	1	0.775194	37	56	60.2151
NCOR2	0	genome.wustl.edu	37	12	124950804	124950804	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4366-01A-01D-1158-08	TCGA-BR-4366-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	eb78138d-9862-4c8e-ac8f-a5a2a31628cc	993d8925-5c1f-43d2-9000-0f6c8f754710	12	124950804	124950804	G	A	SNP	NCOR2	ENST00000356219	human	ensembl	74_37	-1	known	missense	c.620	p.P207L	1.000	NULL	pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	NCOR2	HGNC	ENSG00000196498				103	0	0	35	48	57.8313
ZNF10	0	genome.wustl.edu	37	12	133733085	133733085	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4366-01A-01D-1158-08	TCGA-BR-4366-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	eb78138d-9862-4c8e-ac8f-a5a2a31628cc	993d8925-5c1f-43d2-9000-0f6c8f754710	12	133733085	133733085	C	T	SNP	ZNF10	ENST00000248211	human	ensembl	74_37	+1	known	missense	c.1253	p.S418F	0.129	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF10	HGNC	ENSG00000256223				234	0	0	187	99	34.6154
TMTC1	0	genome.wustl.edu	37	12	29670473	29670473	+	Silent	SNP	A	A	G			TCGA-BR-4366-01A-01D-1158-08	TCGA-BR-4366-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	eb78138d-9862-4c8e-ac8f-a5a2a31628cc	993d8925-5c1f-43d2-9000-0f6c8f754710	12	29670473	29670473	A	G	SNP	TMTC1	ENST00000256062	human	ensembl	74_37	-1	known	silent	c.1732	p.L578	0.203	smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	pfam_TPR_1,pfam_TPR_2,pfam_DUF1736,pfam_PIK-rel_kinase_FAT,pfam_TPR-3,smart_HAT,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TMTC1	HGNC	ENSG00000133687				169	0	0	129	116	47.3469
LRRK2	0	genome.wustl.edu	37	12	40653377	40653377	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4366-01A-01D-1158-08	TCGA-BR-4366-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	eb78138d-9862-4c8e-ac8f-a5a2a31628cc	993d8925-5c1f-43d2-9000-0f6c8f754710	12	40653377	40653377	T	G	SNP	LRRK2	ENST00000298910	human	ensembl	74_37	+1	known	missense	c.1514	p.L505R	1.000	superfamily_ARM-type_fold	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_MIRO-like,pfam_Small_GTPase,pfam_Leu-rich_rpt,pfam_Small_GTPase_ARF/SAR,superfamily_Kinase-like_dom,superfamily_P-loop_NTPase,superfamily_ARM-type_fold,superfamily_WD40_repeat_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Small_GTPase_Rab_type,smart_Tyr_kinase_cat_dom,smart_Ser/Thr_dual-sp_kinase_dom,prints_Small_GTPase,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,tigrfam_Small_GTP-bd_dom	-	no_errors	LRRK2	HGNC	ENSG00000188906				153	0	0	190	12	5.94059
PHLDA1	0	genome.wustl.edu	37	12	76424721	76424721	+	Silent	SNP	C	C	T			TCGA-BR-4366-01A-01D-1158-08	TCGA-BR-4366-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	eb78138d-9862-4c8e-ac8f-a5a2a31628cc	993d8925-5c1f-43d2-9000-0f6c8f754710	12	76424721	76424721	C	T	SNP	PHLDA1	ENST00000266671	human	ensembl	74_37	-1	known	silent	c.801	p.P267	1.000	smart_Pleckstrin_homology	smart_Pleckstrin_homology	-	no_errors	PHLDA1	HGNC	ENSG00000139289				63	0	0	36	3	7.69231
ACSS3	0	genome.wustl.edu	37	12	81627146	81627146	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-4366-01A-01D-1158-08	TCGA-BR-4366-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	eb78138d-9862-4c8e-ac8f-a5a2a31628cc	993d8925-5c1f-43d2-9000-0f6c8f754710	12	81627146	81627146	G	C	SNP	ACSS3	ENST00000548058	human	ensembl	74_37	+1	known	missense	c.1615	p.D539H	1.000	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig	-	no_errors	ACSS3	HGNC	ENSG00000111058				228	1	0.436681	149	68	31.3364
ACSS3	0	genome.wustl.edu	37	12	81627200	81627200	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4366-01A-01D-1158-08	TCGA-BR-4366-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	eb78138d-9862-4c8e-ac8f-a5a2a31628cc	993d8925-5c1f-43d2-9000-0f6c8f754710	12	81627200	81627200	G	T	SNP	ACSS3	ENST00000548058	human	ensembl	74_37	+1	known	missense	c.1669	p.D557Y	1.000	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig	-	no_errors	ACSS3	HGNC	ENSG00000111058				215	0	0	137	62	31.1558
ACSS3	0	genome.wustl.edu	37	12	81627237	81627237	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4366-01A-01D-1158-08	TCGA-BR-4366-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	eb78138d-9862-4c8e-ac8f-a5a2a31628cc	993d8925-5c1f-43d2-9000-0f6c8f754710	12	81627237	81627237	G	T	SNP	ACSS3	ENST00000548058	human	ensembl	74_37	+1	known	missense	c.1706	p.G569V	1.000	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig	-	no_errors	ACSS3	HGNC	ENSG00000111058				222	0	0	125	66	34.555
KDELC1	0	genome.wustl.edu	37	13	103445952	103445952	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4366-01A-01D-1158-08	TCGA-BR-4366-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	eb78138d-9862-4c8e-ac8f-a5a2a31628cc	993d8925-5c1f-43d2-9000-0f6c8f754710	13	103445952	103445952	T	G	SNP	KDELC1	ENST00000376004	human	ensembl	74_37	-1	known	missense	c.593	p.K198T	1.000	pfam_LipoPS_modifying	pfam_LipoPS_modifying,pfam_Filamin/ABP280_repeat-like,superfamily_Ig_E-set,smart_Filamin,smart_LipoPS_modifying,pfscan_Filamin/ABP280_repeat-like	-	no_errors	KDELC1	HGNC	ENSG00000134901				140	0	0	108	62	36.4706
CARS2	0	genome.wustl.edu	37	13	111298372	111298372	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4366-01A-01D-1158-08	TCGA-BR-4366-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	eb78138d-9862-4c8e-ac8f-a5a2a31628cc	993d8925-5c1f-43d2-9000-0f6c8f754710	13	111298372	111298372	A	G	SNP	CARS2	ENST00000257347	human	ensembl	74_37	-1	known	missense	c.1259	p.V420A	0.138	superfamily_tRNAsynth_1a_anticodon-bd,tigrfam_Cys-tRNA-ligase	pfam_Cys-tRNA/MSH_ligase,pfam_Methionyl/Leucyl_tRNA_Synth,pfam_aa-tRNA-synth_Ia,superfamily_tRNAsynth_1a_anticodon-bd,prints_Cys-tRNA/MSH_ligase,tigrfam_Cys-tRNA-ligase	-	no_errors	CARS2	HGNC	ENSG00000134905				179	0	0	184	85	31.5985
PABPC3	0	genome.wustl.edu	37	13	25671314	25671314	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4366-01A-01D-1158-08	TCGA-BR-4366-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	eb78138d-9862-4c8e-ac8f-a5a2a31628cc	993d8925-5c1f-43d2-9000-0f6c8f754710	13	25671314	25671314	G	A	SNP	PABPC3	ENST00000281589	human	ensembl	74_37	+1	known	missense	c.978	p.M326I	1.000	pfam_RRM_dom,smart_RRM_dom_euk,smart_RRM_dom,pfscan_RRM_dom,tigrfam_PABP_1234	pfam_RRM_dom,pfam_PABP_HYD,superfamily_PABP_HYD,smart_RRM_dom,smart_RRM_dom_euk,smart_PABP_HYD,pfscan_RRM_dom,tigrfam_PABP_1234	-	no_errors	PABPC3	HGNC	ENSG00000151846				309	0	0	387	147	27.5281
TOX4	0	genome.wustl.edu	37	14	21961177	21961177	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-4366-01A-01D-1158-08	TCGA-BR-4366-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	eb78138d-9862-4c8e-ac8f-a5a2a31628cc	993d8925-5c1f-43d2-9000-0f6c8f754710	14	21961177	21961177	C	G	SNP	TOX4	ENST00000262709	human	ensembl	74_37	+1	known	missense	c.1402	p.P468A	1.000	NULL	pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	-	no_errors	TOX4	HGNC	ENSG00000092203				210	0	0	274	81	22.8169
G2E3	0	genome.wustl.edu	37	14	31085623	31085623	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-4366-01A-01D-1158-08	TCGA-BR-4366-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	eb78138d-9862-4c8e-ac8f-a5a2a31628cc	993d8925-5c1f-43d2-9000-0f6c8f754710	14	31085623	31085623	C	G	SNP	G2E3	ENST00000206595	human	ensembl	74_37	+1	known	missense	c.2004	p.N668K	1.000	pfam_HECT,superfamily_HECT,smart_HECT,pfscan_HECT	pfam_HECT,superfamily_HECT,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_HECT,pfscan_HECT	-	no_errors	G2E3	HGNC	ENSG00000092140				37	0	0	8	23	74.1935
HERC2P3	0	genome.wustl.edu	37	15	20588425	20588425	+	RNA	SNP	C	C	T			TCGA-BR-4366-01A-01D-1158-08	TCGA-BR-4366-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	eb78138d-9862-4c8e-ac8f-a5a2a31628cc	993d8925-5c1f-43d2-9000-0f6c8f754710	15	20588425	20588425	C	T	SNP	HERC2P3	ENST00000428453	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	HERC2P3	HGNC	ENSG00000180229				24	0	0	12	7	36.8421
WHAMMP3	0	genome.wustl.edu	37	15	23205184	23205184	+	RNA	SNP	G	G	A			TCGA-BR-4366-01A-01D-1158-08	TCGA-BR-4366-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	eb78138d-9862-4c8e-ac8f-a5a2a31628cc	993d8925-5c1f-43d2-9000-0f6c8f754710	15	23205184	23205184	G	A	SNP	WHAMMP3	ENST00000400153	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.696	-	-	-	no_errors	WHAMMP3	HGNC	ENSG00000187667				16	0	0	21	4	16
WHAMMP3	0	genome.wustl.edu	37	15	23205193	23205193	+	RNA	SNP	A	A	G			TCGA-BR-4366-01A-01D-1158-08	TCGA-BR-4366-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	eb78138d-9862-4c8e-ac8f-a5a2a31628cc	993d8925-5c1f-43d2-9000-0f6c8f754710	15	23205193	23205193	A	G	SNP	WHAMMP3	ENST00000400153	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	WHAMMP3	HGNC	ENSG00000187667				15	0	0	20	3	13.0435
OCA2	0	genome.wustl.edu	37	15	28228581	28228581	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4366-01A-01D-1158-08	TCGA-BR-4366-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	eb78138d-9862-4c8e-ac8f-a5a2a31628cc	993d8925-5c1f-43d2-9000-0f6c8f754710	15	28228581	28228581	T	G	SNP	OCA2	ENST00000354638	human	ensembl	74_37	-1	known	missense	c.1413	p.E471D	1.000	pfam_Cit_transptr-like_dom,pfam_Na/sul_symport,pfam_Arsenical_pump_ArsB,tigrfam_Arsenical_pump_ArsB	pfam_Cit_transptr-like_dom,pfam_Na/sul_symport,pfam_Arsenical_pump_ArsB,tigrfam_Arsenical_pump_ArsB	-	no_errors	OCA2	HGNC	ENSG00000104044				91	0	0	73	23	23.9583
CLN6	0	genome.wustl.edu	37	15	68504080	68504080	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4366-01A-01D-1158-08	TCGA-BR-4366-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	eb78138d-9862-4c8e-ac8f-a5a2a31628cc	993d8925-5c1f-43d2-9000-0f6c8f754710	15	68504080	68504080	C	A	SNP	CLN6	ENST00000249806	human	ensembl	74_37	-1	known	missense	c.419	p.S140I	0.999	NULL	NULL	-	no_errors	CLN6	HGNC	ENSG00000128973				243	0	0	202	102	33.5526
ADPGK	0	genome.wustl.edu	37	15	73052844	73052844	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-4366-01A-01D-1158-08	TCGA-BR-4366-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	eb78138d-9862-4c8e-ac8f-a5a2a31628cc	993d8925-5c1f-43d2-9000-0f6c8f754710	15	73052844	73052844	G	C	SNP	ADPGK	ENST00000311669	human	ensembl	74_37	-1	known	missense	c.547	p.P183A	1.000	pfam_ADP_PFK/GK	pfam_ADP_PFK/GK	-	no_errors	ADPGK	HGNC	ENSG00000159322				173	0	0	118	77	39.4872
IFT140	0	genome.wustl.edu	37	16	1614069	1614069	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4366-01A-01D-1158-08	TCGA-BR-4366-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	eb78138d-9862-4c8e-ac8f-a5a2a31628cc	993d8925-5c1f-43d2-9000-0f6c8f754710	16	1614069	1614069	C	T	SNP	IFT140	ENST00000426508	human	ensembl	74_37	-1	known	missense	c.1996	p.V666M	0.299	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	IFT140	HGNC	ENSG00000187535				114	0	0	76	5	6.17284
LOC653786	0	genome.wustl.edu	37	16	22558305	22558305	+	RNA	SNP	T	T	C			TCGA-BR-4366-01A-01D-1158-08	TCGA-BR-4366-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	eb78138d-9862-4c8e-ac8f-a5a2a31628cc	993d8925-5c1f-43d2-9000-0f6c8f754710	16	22558305	22558305	T	C	SNP	LOC653786	ENST00000550753	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.020	-	-	-	no_errors	RP11-368J21.3	Clone_based_vega_gene	ENSG00000257838				55	0	0	11	3	21.4286
KIF22	0	genome.wustl.edu	37	16	29802091	29802091	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4366-01A-01D-1158-08	TCGA-BR-4366-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	eb78138d-9862-4c8e-ac8f-a5a2a31628cc	993d8925-5c1f-43d2-9000-0f6c8f754710	16	29802091	29802091	G	A	SNP	KIF22	ENST00000160827	human	ensembl	74_37	+1	known	missense	c.11	p.G4D	0.000	NULL	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,superfamily_RuvA_2-like,smart_Kinesin_motor_dom,smart_Hlx-hairpin-Hlx_DNA-bd_motif,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF22	HGNC	ENSG00000079616				13	0	0	6	6	50
CDH8	0	genome.wustl.edu	37	16	61747758	61747758	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-4366-01A-01D-1158-08	TCGA-BR-4366-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	eb78138d-9862-4c8e-ac8f-a5a2a31628cc	993d8925-5c1f-43d2-9000-0f6c8f754710	16	61747758	61747758	G	C	SNP	CDH8	ENST00000577390	human	ensembl	74_37	-1	known	missense	c.1641	p.I547M	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH8	HGNC	ENSG00000150394				56	0	0	29	15	34.0909
CDH8	0	genome.wustl.edu	37	16	61935315	61935315	+	Silent	SNP	A	A	C			TCGA-BR-4366-01A-01D-1158-08	TCGA-BR-4366-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	eb78138d-9862-4c8e-ac8f-a5a2a31628cc	993d8925-5c1f-43d2-9000-0f6c8f754710	16	61935315	61935315	A	C	SNP	CDH8	ENST00000577390	human	ensembl	74_37	-1	known	silent	c.315	p.A105	0.999	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH8	HGNC	ENSG00000150394				102	0	0	55	21	27.6316
FLCN	0	genome.wustl.edu	37	17	17127308	17127308	+	Silent	SNP	G	G	T			TCGA-BR-4366-01A-01D-1158-08	TCGA-BR-4366-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	eb78138d-9862-4c8e-ac8f-a5a2a31628cc	993d8925-5c1f-43d2-9000-0f6c8f754710	17	17127308	17127308	G	T	SNP	FLCN	ENST00000285071	human	ensembl	74_37	-1	known	silent	c.546	p.L182	1.000	pfam_Folliculin	pfam_Folliculin	-	no_errors	FLCN	HGNC	ENSG00000154803				102	0	0	67	17	20.2381
RAPGEFL1	0	genome.wustl.edu	37	17	38346698	38346698	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4366-01A-01D-1158-08	TCGA-BR-4366-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	eb78138d-9862-4c8e-ac8f-a5a2a31628cc	993d8925-5c1f-43d2-9000-0f6c8f754710	17	38346698	38346698	T	C	SNP	RAPGEFL1	ENST00000264644	human	ensembl	74_37	+1	known	missense	c.509	p.L170P	1.000	superfamily_Ras_GEF_dom	pfam_RasGRF_CDC25,superfamily_Ras_GEF_dom,smart_RasGRF_CDC25,pfscan_RasGRF_CDC25	-	no_errors	RAPGEFL1	HGNC	ENSG00000108352				97	0	0	71	39	35.4545
KRT33A	0	genome.wustl.edu	37	17	39506755	39506755	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4366-01A-01D-1158-08	TCGA-BR-4366-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	eb78138d-9862-4c8e-ac8f-a5a2a31628cc	993d8925-5c1f-43d2-9000-0f6c8f754710	17	39506755	39506755	G	A	SNP	KRT33A	ENST00000007735	human	ensembl	74_37	-1	known	missense	c.265	p.R89W	0.710	pfam_IF	pfam_IF,superfamily_Prefoldin,prints_Keratin_I	-	no_errors	KRT33A	HGNC	ENSG00000006059				86	0	0	63	42	40
PRPSAP1	0	genome.wustl.edu	37	17	74328423	74328423	+	Silent	SNP	G	G	A			TCGA-BR-4366-01A-01D-1158-08	TCGA-BR-4366-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	eb78138d-9862-4c8e-ac8f-a5a2a31628cc	993d8925-5c1f-43d2-9000-0f6c8f754710	17	74328423	74328423	G	A	SNP	PRPSAP1	ENST00000446526	human	ensembl	74_37	-1	known	silent	c.384	p.F128	1.000	tigrfam_Rib-P_diPkinase	tigrfam_Rib-P_diPkinase	-	no_errors	PRPSAP1	HGNC	ENSG00000161542				171	0	0	170	101	37.2694
TP53	0	genome.wustl.edu	37	17	7578431	7578431	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4366-01A-01D-1158-08	TCGA-BR-4366-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	eb78138d-9862-4c8e-ac8f-a5a2a31628cc	993d8925-5c1f-43d2-9000-0f6c8f754710	17	7578431	7578431	G	A	SNP	TP53	ENST00000269305	human	ensembl	74_37	-1	known	nonsense	c.499	p.Q167*	0.998	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510				89	0	0	21	91	81.25
ROCK1	0	genome.wustl.edu	37	18	18539829	18539829	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4366-01A-01D-1158-08	TCGA-BR-4366-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	eb78138d-9862-4c8e-ac8f-a5a2a31628cc	993d8925-5c1f-43d2-9000-0f6c8f754710	18	18539829	18539829	A	G	SNP	ROCK1	ENST00000399799	human	ensembl	74_37	-1	known	missense	c.3484	p.S1162P	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pirsf_Rho-assoc_coiled-coil_kin,pfscan_Pleckstrin_homology	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Rho-bd_dom,pfam_HR1_rho-bd,pfam_Pleckstrin_homology,pfam_Pkinase_C,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,smart_Pleckstrin_homology,smart_Prot_Kinase_C-like_PE/DAG-bd,pirsf_Rho-assoc_coiled-coil_kin,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_dom	-	no_errors	ROCK1	HGNC	ENSG00000067900				26	0	0	29	4	12.1212
ASXL3	0	genome.wustl.edu	37	18	31319396	31319396	+	Silent	SNP	G	G	A			TCGA-BR-4366-01A-01D-1158-08	TCGA-BR-4366-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	eb78138d-9862-4c8e-ac8f-a5a2a31628cc	993d8925-5c1f-43d2-9000-0f6c8f754710	18	31319396	31319396	G	A	SNP	ASXL3	ENST00000269197	human	ensembl	74_37	+1	known	silent	c.2028	p.L676	1.000	NULL	superfamily_Znf_FYVE_PHD	-	no_errors	ASXL3	HGNC	ENSG00000141431				114	0	0	191	15	7.28155
ELAVL3	0	genome.wustl.edu	37	19	11565551	11565551	+	Silent	SNP	G	G	A			TCGA-BR-4366-01A-01D-1158-08	TCGA-BR-4366-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	eb78138d-9862-4c8e-ac8f-a5a2a31628cc	993d8925-5c1f-43d2-9000-0f6c8f754710	19	11565551	11565551	G	A	SNP	ELAVL3	ENST00000359227	human	ensembl	74_37	-1	known	silent	c.894	p.S298	0.990	pfam_RRM_dom,smart_RRM_dom_euk,smart_RRM_dom,pfscan_RRM_dom,tigrfam_ELAD_HUD_SF	pfam_RRM_dom,smart_RRM_dom_euk,smart_RRM_dom,pfscan_RRM_dom,prints_Hud_Sxl_RNA,tigrfam_ELAD_HUD_SF	-	no_errors	ELAVL3	HGNC	ENSG00000196361				146	0	0	76	69	47.5862
SLC1A6	0	genome.wustl.edu	37	19	15067316	15067316	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4366-01A-01D-1158-08	TCGA-BR-4366-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	eb78138d-9862-4c8e-ac8f-a5a2a31628cc	993d8925-5c1f-43d2-9000-0f6c8f754710	19	15067316	15067316	G	T	SNP	SLC1A6	ENST00000221742	human	ensembl	74_37	-1	known	missense	c.1141	p.L381I	1.000	pfam_Na-dicarboxylate_symporter	pfam_Na-dicarboxylate_symporter,prints_Na-dicarboxylate_symporter	-	no_errors	SLC1A6	HGNC	ENSG00000105143				41	0	0	26	16	38.0952
CCDC105	0	genome.wustl.edu	37	19	15121880	15121880	+	Silent	SNP	C	C	T			TCGA-BR-4366-01A-01D-1158-08	TCGA-BR-4366-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	eb78138d-9862-4c8e-ac8f-a5a2a31628cc	993d8925-5c1f-43d2-9000-0f6c8f754710	19	15121880	15121880	C	T	SNP	CCDC105	ENST00000292574	human	ensembl	74_37	+1	known	silent	c.243	p.G81	0.790	NULL	pfam_Tektin	-	no_errors	CCDC105	HGNC	ENSG00000160994				8	0	0	10	5	33.3333
EPHX3	0	genome.wustl.edu	37	19	15342603	15342603	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4366-01A-01D-1158-08	TCGA-BR-4366-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	eb78138d-9862-4c8e-ac8f-a5a2a31628cc	993d8925-5c1f-43d2-9000-0f6c8f754710	19	15342603	15342603	C	T	SNP	EPHX3	ENST00000221730	human	ensembl	74_37	-1	known	missense	c.313	p.G105S	1.000	prints_Epox_hydrolase-like	pfam_AB_hydrolase_1,prints_Epox_hydrolase-like,prints_AB_hydrolase_1	-	no_errors	EPHX3	HGNC	ENSG00000105131				115	0	0	65	36	35.6436
CPAMD8	0	genome.wustl.edu	37	19	17091331	17091331	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4366-01A-01D-1158-08	TCGA-BR-4366-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	eb78138d-9862-4c8e-ac8f-a5a2a31628cc	993d8925-5c1f-43d2-9000-0f6c8f754710	19	17091331	17091331	G	A	SNP	CPAMD8	ENST00000443236	human	ensembl	74_37	-1	known	missense	c.1702	p.R568C	0.032	pfam_A2M_N_2	pfam_A2M_comp,pfam_A2M_N_2,pfam_Methyltransf_FA,pfam_Macroglobln_a2,pfam_A-macroglobulin_rcpt-bd,pfam_A2M_N,pfam_MacrogloblnA2_thiol-ester-bond,pfam_Kazal_dom,superfamily_Terpenoid_cyclase/PrenylTrfase,superfamily_A-macroglobulin_rcpt-bd,smart_Kazal_dom	-	no_errors	CPAMD8	HGNC	ENSG00000160111				97	0	0	100	16	13.7931
ZNF257	0	genome.wustl.edu	37	19	22271975	22271975	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-4366-01A-01D-1158-08	TCGA-BR-4366-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	eb78138d-9862-4c8e-ac8f-a5a2a31628cc	993d8925-5c1f-43d2-9000-0f6c8f754710	19	22271975	22271975	A	T	SNP	ZNF257	ENST00000594947	human	ensembl	74_37	+1	known	missense	c.1423	p.T475S	0.010	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF257	HGNC	ENSG00000197134				106	0	0	74	9	10.8434
ZNF257	0	genome.wustl.edu	37	19	22272025	22272025	+	Silent	SNP	A	A	G			TCGA-BR-4366-01A-01D-1158-08	TCGA-BR-4366-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	eb78138d-9862-4c8e-ac8f-a5a2a31628cc	993d8925-5c1f-43d2-9000-0f6c8f754710	19	22272025	22272025	A	G	SNP	ZNF257	ENST00000594947	human	ensembl	74_37	+1	known	silent	c.1473	p.E491	0.075	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF257	HGNC	ENSG00000197134				113	0	0	82	10	10.8696
ZNF536	0	genome.wustl.edu	37	19	30935907	30935907	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4366-01A-01D-1158-08	TCGA-BR-4366-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	eb78138d-9862-4c8e-ac8f-a5a2a31628cc	993d8925-5c1f-43d2-9000-0f6c8f754710	19	30935907	30935907	G	A	SNP	ZNF536	ENST00000355537	human	ensembl	74_37	+1	known	missense	c.1438	p.V480I	0.773	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF536	HGNC	ENSG00000198597				103	1	0.961538	632	57	8.27286
SPTBN4	0	genome.wustl.edu	37	19	41000878	41000878	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4366-01A-01D-1158-08	TCGA-BR-4366-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	eb78138d-9862-4c8e-ac8f-a5a2a31628cc	993d8925-5c1f-43d2-9000-0f6c8f754710	19	41000878	41000878	G	A	SNP	SPTBN4	ENST00000352632	human	ensembl	74_37	+1	known	missense	c.662	p.R221Q	0.999	pirsf_Spectrin_bsu,pfam_CH-domain,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	pirsf_Spectrin_bsu,pfam_Spectrin_repeat,pfam_CH-domain,pfam_Pleckstrin_homology,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Pleckstrin_homology,prints_PH_dom-spectrin-type,pfscan_CH-domain,pfscan_Pleckstrin_homology	-	no_errors	SPTBN4	HGNC	ENSG00000160460				79	0	0	25	33	56.8966
SHC2	0	genome.wustl.edu	37	19	422149	422149	+	Silent	SNP	G	G	A			TCGA-BR-4366-01A-01D-1158-08	TCGA-BR-4366-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	eb78138d-9862-4c8e-ac8f-a5a2a31628cc	993d8925-5c1f-43d2-9000-0f6c8f754710	19	422149	422149	G	A	SNP	SHC2	ENST00000264554	human	ensembl	74_37	-1	known	silent	c.1617	p.G539	0.998	pfam_SH2,smart_SH2,pfscan_SH2	pfam_PTB/PI_dom,pfam_SH2,smart_PTB/PI_dom,smart_SH2,pfscan_PTB/PI_dom,pfscan_SH2,prints_PID_Shc-like,prints_SH2	-	no_errors	SHC2	HGNC	ENSG00000129946				16	0	0	22	9	29.0323
RPS9	0	genome.wustl.edu	37	19	54705417	54705417	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4366-01A-01D-1158-08	TCGA-BR-4366-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	eb78138d-9862-4c8e-ac8f-a5a2a31628cc	993d8925-5c1f-43d2-9000-0f6c8f754710	19	54705417	54705417	C	A	SNP	RPS9	ENST00000302907	human	ensembl	74_37	+1	known	missense	c.160	p.R54S	1.000	pfam_Ribosomal_S4/S9_N,tigrfam_Ribosomal_S4/S9_euk/arc	pfam_Ribosomal_S4/S9_N,pfam_S4_RNA-bd,smart_S4_RNA-bd,pfscan_S4_RNA-bd,tigrfam_Ribosomal_S4/S9_euk/arc	-	no_errors	RPS9	HGNC	ENSG00000170889				43	0	0	36	3	7.69231
MUC16	0	genome.wustl.edu	37	19	9007487	9007487	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4366-01A-01D-1158-08	TCGA-BR-4366-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	eb78138d-9862-4c8e-ac8f-a5a2a31628cc	993d8925-5c1f-43d2-9000-0f6c8f754710	19	9007487	9007487	T	C	SNP	MUC16	ENST00000397910	human	ensembl	74_37	-1	known	missense	c.39481	p.T13161A	0.017	NULL	pfam_SEA_dom,smart_SEA_dom,pfscan_SEA_dom	-	no_errors	MUC16	HGNC	ENSG00000181143				42	0	0	6	14	70
SH3RF3	0	genome.wustl.edu	37	2	110053479	110053479	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4366-01A-01D-1158-08	TCGA-BR-4366-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	eb78138d-9862-4c8e-ac8f-a5a2a31628cc	993d8925-5c1f-43d2-9000-0f6c8f754710	2	110053479	110053479	G	A	SNP	SH3RF3	ENST00000309415	human	ensembl	74_37	+1	known	missense	c.1705	p.A569T	0.000	superfamily_SH3_domain	pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_Znf_RING,smart_SH3_domain,prints_p67phox,pfscan_SH3_domain,pfscan_Znf_RING	-	no_errors	SH3RF3	HGNC	ENSG00000172985				92	0	0	72	38	34.5455
ZC3H6	0	genome.wustl.edu	37	2	113088706	113088706	+	Silent	SNP	C	C	G			TCGA-BR-4366-01A-01D-1158-08	TCGA-BR-4366-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	eb78138d-9862-4c8e-ac8f-a5a2a31628cc	993d8925-5c1f-43d2-9000-0f6c8f754710	2	113088706	113088706	C	G	SNP	ZC3H6	ENST00000343936	human	ensembl	74_37	+1	known	silent	c.2211	p.L737	0.001	NULL	pfam_Znf_CCCH,smart_Znf_CCCH	-	no_errors	ZC3H6	HGNC	ENSG00000188177				37	0	0	27	17	38.6364
POTEF	0	genome.wustl.edu	37	2	130832597	130832597	+	Silent	SNP	G	G	A			TCGA-BR-4366-01A-01D-1158-08	TCGA-BR-4366-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	eb78138d-9862-4c8e-ac8f-a5a2a31628cc	993d8925-5c1f-43d2-9000-0f6c8f754710	2	130832597	130832597	G	A	SNP	POTEF	ENST00000357462	human	ensembl	74_37	-1	known	silent	c.2448	p.R816	1.000	pfam_Actin-related,smart_Actin-related,prints_Actin-related	pfam_Actin-related,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Actin-related,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Actin-related	-	no_errors	POTEF	HGNC	ENSG00000196604				265	0	0	196	120	37.9747
ENSG00000241772	0	genome.wustl.edu	37	2	139326687	139326687	+	RNA	SNP	T	T	G			TCGA-BR-4366-01A-01D-1158-08	TCGA-BR-4366-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	eb78138d-9862-4c8e-ac8f-a5a2a31628cc	993d8925-5c1f-43d2-9000-0f6c8f754710	2	139326687	139326687	T	G	SNP	ENSG00000241772	ENST00000449869	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.992	-	-	-	no_errors	AC092620.2	Clone_based_vega_gene	ENSG00000241772				236	0	0	262	34	11.4865
LRP1B	0	genome.wustl.edu	37	2	141272221	141272221	+	Splice_Site	SNP	C	C	T			TCGA-BR-4366-01A-01D-1158-08	TCGA-BR-4366-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	eb78138d-9862-4c8e-ac8f-a5a2a31628cc	993d8925-5c1f-43d2-9000-0f6c8f754710	2	141272221	141272221	C	T	SNP	LRP1B	ENST00000389484	human	ensembl	74_37	-1	known	splice_site	c.8269+1	e51+1	1.000	-	-	-	no_errors	LRP1B	HGNC	ENSG00000168702				139	0	0	111	58	34.3195
LRP1B	0	genome.wustl.edu	37	2	141625336	141625336	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-4366-01A-01D-1158-08	TCGA-BR-4366-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	eb78138d-9862-4c8e-ac8f-a5a2a31628cc	993d8925-5c1f-43d2-9000-0f6c8f754710	2	141625336	141625336	A	T	SNP	LRP1B	ENST00000389484	human	ensembl	74_37	-1	known	missense	c.4402	p.Y1468N	1.000	smart_LDLR_classB_rpt,pfscan_LDLR_classB_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,pfam_EG-like_dom,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP1B	HGNC	ENSG00000168702				176	0	0	103	58	36.0248
ARHGAP15	0	genome.wustl.edu	37	2	144245037	144245037	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4366-01A-01D-1158-08	TCGA-BR-4366-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	eb78138d-9862-4c8e-ac8f-a5a2a31628cc	993d8925-5c1f-43d2-9000-0f6c8f754710	2	144245037	144245037	A	C	SNP	ARHGAP15	ENST00000295095	human	ensembl	74_37	+1	known	missense	c.799	p.T267P	1.000	NULL	pfam_RhoGAP_dom,pfam_Pleckstrin_homology,superfamily_Rho_GTPase_activation_prot,smart_Pleckstrin_homology,smart_RhoGAP_dom,pfscan_Pleckstrin_homology,pfscan_RhoGAP_dom	-	no_errors	ARHGAP15	HGNC	ENSG00000075884				187	0	0	102	52	33.7662
ZEB2	0	genome.wustl.edu	37	2	145147197	145147197	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4366-01A-01D-1158-08	TCGA-BR-4366-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	eb78138d-9862-4c8e-ac8f-a5a2a31628cc	993d8925-5c1f-43d2-9000-0f6c8f754710	2	145147197	145147197	C	A	SNP	ZEB2	ENST00000303660	human	ensembl	74_37	-1	known	missense	c.3466	p.G1156C	1.000	NULL	superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	ZEB2	HGNC	ENSG00000169554				358	0	0	275	119	30.203
DNAH7	0	genome.wustl.edu	37	2	196636411	196636411	+	Silent	SNP	C	C	T			TCGA-BR-4366-01A-01D-1158-08	TCGA-BR-4366-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	eb78138d-9862-4c8e-ac8f-a5a2a31628cc	993d8925-5c1f-43d2-9000-0f6c8f754710	2	196636411	196636411	C	T	SNP	DNAH7	ENST00000312428	human	ensembl	74_37	-1	known	silent	c.11406	p.S3802	0.854	pfam_Dynein_heavy_dom	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,superfamily_P-loop_NTPase,superfamily_Signal_recog_particle_SRP9/14,smart_AAA+_ATPase,pfscan_EF_hand_dom	-	no_errors	DNAH7	HGNC	ENSG00000118997				207	0	0	189	94	33.2155
GTF3C3	0	genome.wustl.edu	37	2	197639881	197639881	+	Nonsense_Mutation	SNP	G	G	C			TCGA-BR-4366-01A-01D-1158-08	TCGA-BR-4366-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	eb78138d-9862-4c8e-ac8f-a5a2a31628cc	993d8925-5c1f-43d2-9000-0f6c8f754710	2	197639881	197639881	G	C	SNP	GTF3C3	ENST00000263956	human	ensembl	74_37	-1	known	nonsense	c.1790	p.S597*	1.000	NULL	smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	GTF3C3	HGNC	ENSG00000119041				51	0	0	49	39	44.3182
ALPP	0	genome.wustl.edu	37	2	233243531	233243531	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-4366-01A-01D-1158-08	TCGA-BR-4366-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	eb78138d-9862-4c8e-ac8f-a5a2a31628cc	993d8925-5c1f-43d2-9000-0f6c8f754710	2	233243531	233243531	C	G	SNP	ALPP	ENST00000392027	human	ensembl	74_37	+1	known	missense	c.19	p.L7V	0.627	NULL	pfam_Alkaline_phosphatase,superfamily_Alkaline_phosphatase_core,smart_Alkaline_phosphatase,prints_Alkaline_phosphatase	-	no_errors	ALPP	HGNC	ENSG00000163283				73	0	0	69	37	34.9057
PHF20	0	genome.wustl.edu	37	20	34501210	34501210	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4366-01A-01D-1158-08	TCGA-BR-4366-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	eb78138d-9862-4c8e-ac8f-a5a2a31628cc	993d8925-5c1f-43d2-9000-0f6c8f754710	20	34501210	34501210	A	G	SNP	PHF20	ENST00000374012	human	ensembl	74_37	+1	known	missense	c.1601	p.K534R	1.000	NULL	pfam_DUF3776,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Tudor,smart_Znf_PHD,pfscan_Znf_C2H2	-	no_errors	PHF20	HGNC	ENSG00000025293				17	0	0	27	4	12.9032
MATN4	0	genome.wustl.edu	37	20	43926920	43926920	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4366-01A-01D-1158-08	TCGA-BR-4366-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	eb78138d-9862-4c8e-ac8f-a5a2a31628cc	993d8925-5c1f-43d2-9000-0f6c8f754710	20	43926920	43926920	G	A	SNP	MATN4	ENST00000372754	human	ensembl	74_37	-1	known	missense	c.1439	p.A480V	0.939	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_VWF_A,pfam_EGF-like_Ca-bd_dom,pfam_Matrilin_coiled-coil_trimer,smart_VWF_A,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_VWF_A	-	no_errors	MATN4	HGNC	ENSG00000124159				106	0	0	178	42	19.0909
NFATC2	0	genome.wustl.edu	37	20	50139845	50139845	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4366-01A-01D-1158-08	TCGA-BR-4366-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	eb78138d-9862-4c8e-ac8f-a5a2a31628cc	993d8925-5c1f-43d2-9000-0f6c8f754710	20	50139845	50139845	G	A	SNP	NFATC2	ENST00000396009	human	ensembl	74_37	-1	known	missense	c.935	p.T312M	0.045	NULL	pfam_RHD,pfam_IPT,superfamily_p53-like_TF_DNA-bd,superfamily_Ig_E-set,smart_IPT,pfscan_RHD,prints_NFAT	-	no_errors	NFATC2	HGNC	ENSG00000101096				45	0	0	94	62	39.7436
ZNF217	0	genome.wustl.edu	37	20	52193274	52193274	+	Silent	SNP	T	T	G			TCGA-BR-4366-01A-01D-1158-08	TCGA-BR-4366-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	eb78138d-9862-4c8e-ac8f-a5a2a31628cc	993d8925-5c1f-43d2-9000-0f6c8f754710	20	52193274	52193274	T	G	SNP	ZNF217	ENST00000302342	human	ensembl	74_37	-1	known	silent	c.2029	p.R677	0.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF217	HGNC	ENSG00000171940				322	0	0	507	1602	75.9602
RAE1	0	genome.wustl.edu	37	20	55949675	55949675	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4366-01A-01D-1158-08	TCGA-BR-4366-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	eb78138d-9862-4c8e-ac8f-a5a2a31628cc	993d8925-5c1f-43d2-9000-0f6c8f754710	20	55949675	55949675	G	A	SNP	RAE1	ENST00000371242	human	ensembl	74_37	+1	known	missense	c.838	p.A280T	0.973	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	RAE1	HGNC	ENSG00000101146				349	0	0	406	174	30
LAMA5	0	genome.wustl.edu	37	20	60887023	60887023	+	Silent	SNP	G	G	A			TCGA-BR-4366-01A-01D-1158-08	TCGA-BR-4366-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	eb78138d-9862-4c8e-ac8f-a5a2a31628cc	993d8925-5c1f-43d2-9000-0f6c8f754710	20	60887023	60887023	G	A	SNP	LAMA5	ENST00000252999	human	ensembl	74_37	-1	known	silent	c.9588	p.F3196	0.004	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,pfscan_Laminin_G	pfam_EGF_laminin,pfam_Laminin_I,pfam_Laminin_G,pfam_Laminin_N,pfam_Laminin_II,pfam_Laminin_B_type_IV,superfamily_ConA-like_lec_gl_sf,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N,pfscan_TNFR/NGFR_Cys_rich_reg	-	no_errors	LAMA5	HGNC	ENSG00000130702				119	0	0	180	69	27.7108
DONSON	0	genome.wustl.edu	37	21	34957049	34957049	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-4366-01A-01D-1158-08	TCGA-BR-4366-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	eb78138d-9862-4c8e-ac8f-a5a2a31628cc	993d8925-5c1f-43d2-9000-0f6c8f754710	21	34957049	34957049	C	G	SNP	DONSON	ENST00000303071	human	ensembl	74_37	-1	known	missense	c.632	p.R211P	1.000	NULL	NULL	-	no_errors	DONSON	HGNC	ENSG00000159147				90	0	0	35	29	45.3125
ELFN2	0	genome.wustl.edu	37	22	37769783	37769783	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4366-01A-01D-1158-08	TCGA-BR-4366-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	eb78138d-9862-4c8e-ac8f-a5a2a31628cc	993d8925-5c1f-43d2-9000-0f6c8f754710	22	37769783	37769783	G	A	SNP	ELFN2	ENST00000402918	human	ensembl	74_37	-1	known	missense	c.1792	p.R598W	1.000	NULL	superfamily_Fibronectin_type3,smart_Leu-rich_rpt_typical-subtyp,pfscan_LPXTG_anchor	-	no_errors	ELFN2	HGNC	ENSG00000166897				32	0	0	26	14	35
KCNJ4	0	genome.wustl.edu	37	22	38823394	38823394	+	Silent	SNP	G	G	A			TCGA-BR-4366-01A-01D-1158-08	TCGA-BR-4366-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	eb78138d-9862-4c8e-ac8f-a5a2a31628cc	993d8925-5c1f-43d2-9000-0f6c8f754710	22	38823394	38823394	G	A	SNP	KCNJ4	ENST00000303592	human	ensembl	74_37	-1	known	silent	c.744	p.I248	0.904	pfam_K_chnl_inward-rec_Kir,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir	pfam_K_chnl_inward-rec_Kir,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir2.3	-	no_errors	KCNJ4	HGNC	ENSG00000168135				59	0	0	52	32	38.0952
EFCAB6	0	genome.wustl.edu	37	22	43926804	43926804	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-4366-01A-01D-1158-08	TCGA-BR-4366-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	eb78138d-9862-4c8e-ac8f-a5a2a31628cc	993d8925-5c1f-43d2-9000-0f6c8f754710	22	43926804	43926804	A	T	SNP	EFCAB6	ENST00000262726	human	ensembl	74_37	-1	known	missense	c.4274	p.L1425Q	0.892	NULL	pfam_EF_hand_Ca-bd_contain_6,smart_EF_hand_dom,pfscan_EF_hand_dom	-	no_errors	EFCAB6	HGNC	ENSG00000186976				94	0	0	92	8	8
DZIP3	0	genome.wustl.edu	37	3	108380769	108380769	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4366-01A-01D-1158-08	TCGA-BR-4366-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	eb78138d-9862-4c8e-ac8f-a5a2a31628cc	993d8925-5c1f-43d2-9000-0f6c8f754710	3	108380769	108380769	G	A	SNP	DZIP3	ENST00000361582	human	ensembl	74_37	+1	known	missense	c.2245	p.E749K	0.981	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	DZIP3	HGNC	ENSG00000198919				70	0	0	62	30	32.6087
ITGB5	0	genome.wustl.edu	37	3	124527925	124527925	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4366-01A-01D-1158-08	TCGA-BR-4366-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	eb78138d-9862-4c8e-ac8f-a5a2a31628cc	993d8925-5c1f-43d2-9000-0f6c8f754710	3	124527925	124527925	C	A	SNP	ITGB5	ENST00000296181	human	ensembl	74_37	-1	known	missense	c.1207	p.D403Y	1.000	pirsf_Integrin_bsu,pfam_Integrin_bsu_N,smart_Integrin_bsu_N	pirsf_Integrin_bsu,pfam_Integrin_bsu_N,pfam_Integrin_bsu_cyt_dom,pfam_Integrin_bsu_tail,pfam_EGF_extracell,superfamily_Integrin_bsu_tail,superfamily_Plexin-like_fold,smart_Plexin-like_fold,smart_Integrin_bsu_N,smart_VWF_A,prints_Integrin_bsu	-	no_errors	ITGB5	HGNC	ENSG00000082781				170	0	0	120	78	39.3939
COL6A6	0	genome.wustl.edu	37	3	130381114	130381114	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4366-01A-01D-1158-08	TCGA-BR-4366-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	eb78138d-9862-4c8e-ac8f-a5a2a31628cc	993d8925-5c1f-43d2-9000-0f6c8f754710	3	130381114	130381114	G	A	SNP	COL6A6	ENST00000358511	human	ensembl	74_37	+1	known	missense	c.6464	p.G2155D	0.051	pfscan_VWF_A	pfam_VWF_A,pfam_Collagen,smart_VWF_A,pfscan_VWF_A	-	no_errors	COL6A6	HGNC	ENSG00000206384				284	0	0	222	129	36.7521
STAG1	0	genome.wustl.edu	37	3	136342064	136342064	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4366-01A-01D-1158-08	TCGA-BR-4366-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	eb78138d-9862-4c8e-ac8f-a5a2a31628cc	993d8925-5c1f-43d2-9000-0f6c8f754710	3	136342064	136342064	T	C	SNP	STAG1	ENST00000383202	human	ensembl	74_37	-1	known	missense	c.56	p.H19R	1.000	NULL	pfam_STAG,superfamily_ARM-type_fold	-	no_errors	STAG1	HGNC	ENSG00000118007				227	0	0	171	112	39.576
CNTN6	0	genome.wustl.edu	37	3	1394007	1394007	+	Splice_Site	SNP	G	G	C			TCGA-BR-4366-01A-01D-1158-08	TCGA-BR-4366-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	eb78138d-9862-4c8e-ac8f-a5a2a31628cc	993d8925-5c1f-43d2-9000-0f6c8f754710	3	1394007	1394007	G	C	SNP	CNTN6	ENST00000350110	human	ensembl	74_37	+1	known	splice_site	c.1365-1	e11-1	0.997	-	-	-	no_errors	CNTN6	HGNC	ENSG00000134115				90	0	0	34	34	50
ATP1B3	0	genome.wustl.edu	37	3	141644421	141644421	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4366-01A-01D-1158-08	TCGA-BR-4366-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	eb78138d-9862-4c8e-ac8f-a5a2a31628cc	993d8925-5c1f-43d2-9000-0f6c8f754710	3	141644421	141644421	A	G	SNP	ATP1B3	ENST00000286371	human	ensembl	74_37	+1	known	missense	c.718	p.N240D	0.000	pfam_Na/K_ATPase_sub_beta,tigrfam_Na/K_ATPase_sub_beta	pfam_Na/K_ATPase_sub_beta,tigrfam_Na/K_ATPase_sub_beta	-	no_errors	ATP1B3	HGNC	ENSG00000069849				259	0	0	197	135	40.6627
CNTN6	0	genome.wustl.edu	37	3	1424781	1424781	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4366-01A-01D-1158-08	TCGA-BR-4366-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	eb78138d-9862-4c8e-ac8f-a5a2a31628cc	993d8925-5c1f-43d2-9000-0f6c8f754710	3	1424781	1424781	T	G	SNP	CNTN6	ENST00000350110	human	ensembl	74_37	+1	known	missense	c.2322	p.F774L	1.000	superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	CNTN6	HGNC	ENSG00000134115				138	0	0	60	49	44.9541
PHC3	0	genome.wustl.edu	37	3	169840471	169840471	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4366-01A-01D-1158-08	TCGA-BR-4366-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	eb78138d-9862-4c8e-ac8f-a5a2a31628cc	993d8925-5c1f-43d2-9000-0f6c8f754710	3	169840471	169840471	C	T	SNP	PHC3	ENST00000495893	human	ensembl	74_37	-1	known	missense	c.1850	p.R617Q	0.116	NULL	pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM,pfscan_SAM,pfscan_Znf_FCS	-	no_errors	PHC3	HGNC	ENSG00000173889				113	0	0	122	49	28.655
LINC00969	0	genome.wustl.edu	37	3	195400822	195400822	+	RNA	SNP	G	G	A			TCGA-BR-4366-01A-01D-1158-08	TCGA-BR-4366-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	eb78138d-9862-4c8e-ac8f-a5a2a31628cc	993d8925-5c1f-43d2-9000-0f6c8f754710	3	195400822	195400822	G	A	SNP	LINC00969	ENST00000414625	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	LINC00969	HGNC	ENSG00000242086				23	0	0	30	11	26.8293
LINC00969	0	genome.wustl.edu	37	3	195410622	195410622	+	Splice_Site	SNP	G	G	A			TCGA-BR-4366-01A-01D-1158-08	TCGA-BR-4366-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	eb78138d-9862-4c8e-ac8f-a5a2a31628cc	993d8925-5c1f-43d2-9000-0f6c8f754710	3	195410622	195410622	G	A	SNP	LINC00969	ENST00000414625	human	ensembl	74_37	+1	known	splice_site	c.NULL	NULL	1.000	-	-	-	no_errors	LINC00969	HGNC	ENSG00000242086				11	0	0	25	4	13.7931
FBXL2	0	genome.wustl.edu	37	3	33427243	33427243	+	RNA	SNP	G	G	A			TCGA-BR-4366-01A-01D-1158-08	TCGA-BR-4366-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	eb78138d-9862-4c8e-ac8f-a5a2a31628cc	993d8925-5c1f-43d2-9000-0f6c8f754710	3	33427243	33427243	G	A	SNP	FBXL2	ENST00000283627	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.004	-	-	-	no_errors	FBXL2	HGNC	ENSG00000153558				11	0	0	13	9	40.9091
SLC25A38	0	genome.wustl.edu	37	3	39433101	39433101	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4366-01A-01D-1158-08	TCGA-BR-4366-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	eb78138d-9862-4c8e-ac8f-a5a2a31628cc	993d8925-5c1f-43d2-9000-0f6c8f754710	3	39433101	39433101	C	T	SNP	SLC25A38	ENST00000273158	human	ensembl	74_37	+1	known	missense	c.446	p.T149M	1.000	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	-	no_errors	SLC25A38	HGNC	ENSG00000144659				211	0	0	154	87	36.0996
P4HTM	0	genome.wustl.edu	37	3	49027828	49027828	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4366-01A-01D-1158-08	TCGA-BR-4366-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	eb78138d-9862-4c8e-ac8f-a5a2a31628cc	993d8925-5c1f-43d2-9000-0f6c8f754710	3	49027828	49027828	C	T	SNP	P4HTM	ENST00000343546	human	ensembl	74_37	+1	known	missense	c.139	p.R47C	0.996	NULL	pfam_Oxoglu/Fe-dep_dioxygenase,smart_Pro_4_hyd_alph	-	no_errors	P4HTM	HGNC	ENSG00000178467				20	0	0	13	10	43.4783
TMEM115	0	genome.wustl.edu	37	3	50396054	50396054	+	Silent	SNP	C	C	G			TCGA-BR-4366-01A-01D-1158-08	TCGA-BR-4366-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	eb78138d-9862-4c8e-ac8f-a5a2a31628cc	993d8925-5c1f-43d2-9000-0f6c8f754710	3	50396054	50396054	C	G	SNP	TMEM115	ENST00000266025	human	ensembl	74_37	-1	known	silent	c.441	p.V147	1.000	pfam_DUF1751_Mem_euk	pfam_DUF1751_Mem_euk	-	no_errors	TMEM115	HGNC	ENSG00000126062				38	0	0	44	30	40.5405
PRSS12	0	genome.wustl.edu	37	4	119252907	119252907	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4366-01A-01D-1158-08	TCGA-BR-4366-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	eb78138d-9862-4c8e-ac8f-a5a2a31628cc	993d8925-5c1f-43d2-9000-0f6c8f754710	4	119252907	119252907	G	A	SNP	PRSS12	ENST00000296498	human	ensembl	74_37	-1	known	missense	c.935	p.A312V	0.861	pfam_SRCR,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_SRCR	pfam_SRCR,pfam_Peptidase_S1,pfam_Kringle,superfamily_Trypsin-like_Pept_dom,superfamily_Srcr_rcpt-rel,superfamily_Kringle-like,smart_Kringle,smart_Srcr_rcpt-rel,smart_Peptidase_S1,pfscan_Kringle,pfscan_SRCR,pfscan_Peptidase_S1,prints_SRCR,prints_Peptidase_S1A	-	no_errors	PRSS12	HGNC	ENSG00000164099				100	0	0	64	4	5.88235
FRG1	0	genome.wustl.edu	37	4	190874255	190874255	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-4366-01A-01D-1158-08	TCGA-BR-4366-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	eb78138d-9862-4c8e-ac8f-a5a2a31628cc	993d8925-5c1f-43d2-9000-0f6c8f754710	4	190874255	190874255	A	T	SNP	FRG1	ENST00000226798	human	ensembl	74_37	+1	known	missense	c.292	p.T98S	1.000	pfam_FRG1,pfam_Fascin-domain,superfamily_Actin_cross-linking	pfam_FRG1,pfam_Fascin-domain,superfamily_Actin_cross-linking	-	no_errors	FRG1	HGNC	ENSG00000109536				53	0	0	31	6	16.2162
GABRB1	0	genome.wustl.edu	37	4	47033662	47033662	+	RNA	SNP	G	G	T			TCGA-BR-4366-01A-01D-1158-08	TCGA-BR-4366-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	eb78138d-9862-4c8e-ac8f-a5a2a31628cc	993d8925-5c1f-43d2-9000-0f6c8f754710	4	47033662	47033662	G	T	SNP	GABRB1	ENST00000509366	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	GABRB1	HGNC	ENSG00000163288				133	0	0	96	53	35.5705
IL8	0	genome.wustl.edu	37	4	74607379	74607379	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4366-01A-01D-1158-08	TCGA-BR-4366-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	eb78138d-9862-4c8e-ac8f-a5a2a31628cc	993d8925-5c1f-43d2-9000-0f6c8f754710	4	74607379	74607379	C	T	SNP	IL8	ENST00000307407	human	ensembl	74_37	+1	known	missense	c.185	p.A62V	0.000	pfam_Chemokine_IL8-like_dom,superfamily_Chemokine_IL8-like_dom,smart_Chemokine_IL8-like_dom,prints_Chemokine_CXC	pfam_Chemokine_IL8-like_dom,superfamily_Chemokine_IL8-like_dom,smart_Chemokine_IL8-like_dom,prints_Chemokine_CXC	-	no_errors	IL8	HGNC	ENSG00000169429				85	0	0	47	19	28.7879
PAQR3	0	genome.wustl.edu	37	4	79860320	79860320	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4366-01A-01D-1158-08	TCGA-BR-4366-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	eb78138d-9862-4c8e-ac8f-a5a2a31628cc	993d8925-5c1f-43d2-9000-0f6c8f754710	4	79860320	79860320	C	T	SNP	PAQR3	ENST00000511594	human	ensembl	74_37	-1	known	nonsense	c.59	p.W20*	1.000	NULL	pfam_HlyIII-related	-	no_errors	PAQR3	HGNC	ENSG00000163291				124	0	0	36	71	66.3551
NAA11	0	genome.wustl.edu	37	4	80246965	80246965	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4366-01A-01D-1158-08	TCGA-BR-4366-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	eb78138d-9862-4c8e-ac8f-a5a2a31628cc	993d8925-5c1f-43d2-9000-0f6c8f754710	4	80246965	80246965	G	A	SNP	NAA11	ENST00000286794	human	ensembl	74_37	-1	known	missense	c.67	p.P23S	0.999	superfamily_Acyl_CoA_acyltransferase,pfscan_GNAT_dom	pfam_GNAT_dom,pfam_FR47,superfamily_Acyl_CoA_acyltransferase,pfscan_GNAT_dom	-	no_errors	NAA11	HGNC	ENSG00000156269				83	0	0	66	5	7.04225
SNCAIP	0	genome.wustl.edu	37	5	121739511	121739511	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4366-01A-01D-1158-08	TCGA-BR-4366-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	eb78138d-9862-4c8e-ac8f-a5a2a31628cc	993d8925-5c1f-43d2-9000-0f6c8f754710	5	121739511	121739511	G	A	SNP	SNCAIP	ENST00000379538	human	ensembl	74_37	+1	known	missense	c.35	p.R12Q	1.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	SNCAIP	HGNC	ENSG00000064692				197	0	0	166	124	42.7586
PCDHA3	0	genome.wustl.edu	37	5	140180983	140180983	+	Silent	SNP	G	G	A			TCGA-BR-4366-01A-01D-1158-08	TCGA-BR-4366-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	eb78138d-9862-4c8e-ac8f-a5a2a31628cc	993d8925-5c1f-43d2-9000-0f6c8f754710	5	140180983	140180983	G	A	SNP	PCDHA3	ENST00000522353	human	ensembl	74_37	+1	known	silent	c.201	p.A67	0.578	pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA3	HGNC	ENSG00000255408				237	0	0	190	123	39.2971
PCDHGA10	0	genome.wustl.edu	37	5	140794719	140794719	+	Silent	SNP	C	C	T			TCGA-BR-4366-01A-01D-1158-08	TCGA-BR-4366-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	eb78138d-9862-4c8e-ac8f-a5a2a31628cc	993d8925-5c1f-43d2-9000-0f6c8f754710	5	140794719	140794719	C	T	SNP	PCDHGA10	ENST00000398610	human	ensembl	74_37	+1	known	silent	c.1977	p.S659	0.005	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA10	HGNC	ENSG00000253846				114	0	0	85	50	37.037
PCDHGB7	0	genome.wustl.edu	37	5	140799123	140799123	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4366-01A-01D-1158-08	TCGA-BR-4366-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	eb78138d-9862-4c8e-ac8f-a5a2a31628cc	993d8925-5c1f-43d2-9000-0f6c8f754710	5	140799123	140799123	C	T	SNP	PCDHGB7	ENST00000398594	human	ensembl	74_37	+1	known	missense	c.1697	p.A566V	0.489	superfamily_Cadherin-like	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGB7	HGNC	ENSG00000254122				57	0	0	36	22	37.931
TNIP1	0	genome.wustl.edu	37	5	150422226	150422226	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-4366-01A-01D-1158-08	TCGA-BR-4366-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	eb78138d-9862-4c8e-ac8f-a5a2a31628cc	993d8925-5c1f-43d2-9000-0f6c8f754710	5	150422226	150422226	C	A	SNP	TNIP1	ENST00000315050	human	ensembl	74_37	-1	known	nonsense	c.1009	p.E337*	1.000	NULL	superfamily_ARM-type_fold	-	no_errors	TNIP1	HGNC	ENSG00000145901				38	0	0	43	25	36.7647
EBF1	0	genome.wustl.edu	37	5	158204508	158204508	+	Silent	SNP	G	G	T			TCGA-BR-4366-01A-01D-1158-08	TCGA-BR-4366-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	eb78138d-9862-4c8e-ac8f-a5a2a31628cc	993d8925-5c1f-43d2-9000-0f6c8f754710	5	158204508	158204508	G	T	SNP	EBF1	ENST00000313708	human	ensembl	74_37	-1	known	silent	c.949	p.R317	1.000	pfam_IPT,superfamily_Ig_E-set,smart_IPT	pfam_IPT,superfamily_Ig_E-set,superfamily_bHLH_dom,smart_IPT	-	no_errors	EBF1	HGNC	ENSG00000164330				176	0	0	127	67	34.5361
SQSTM1	0	genome.wustl.edu	37	5	179263587	179263587	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4366-01A-01D-1158-08	TCGA-BR-4366-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	eb78138d-9862-4c8e-ac8f-a5a2a31628cc	993d8925-5c1f-43d2-9000-0f6c8f754710	5	179263587	179263587	G	A	SNP	SQSTM1	ENST00000510187	human	ensembl	74_37	+1	putative	missense	c.1067	p.R356H	0.000	NULL	pfam_Znf_ZZ,pfam_OPR_PB1,smart_OPR_PB1,smart_Znf_ZZ,pfscan_Znf_ZZ	-	no_errors	SQSTM1	HGNC	ENSG00000161011				241	0	0	184	106	36.5517
RXFP3	0	genome.wustl.edu	37	5	33937955	33937955	+	Silent	SNP	G	G	A			TCGA-BR-4366-01A-01D-1158-08	TCGA-BR-4366-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	eb78138d-9862-4c8e-ac8f-a5a2a31628cc	993d8925-5c1f-43d2-9000-0f6c8f754710	5	33937955	33937955	G	A	SNP	RXFP3	ENST00000330120	human	ensembl	74_37	+1	known	silent	c.1110	p.A370	0.958	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_Formyl_pep_rcpt	-	no_errors	RXFP3	HGNC	ENSG00000182631				156	0	0	278	67	19.4203
FGF10	0	genome.wustl.edu	37	5	44388771	44388771	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4366-01A-01D-1158-08	TCGA-BR-4366-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	eb78138d-9862-4c8e-ac8f-a5a2a31628cc	993d8925-5c1f-43d2-9000-0f6c8f754710	5	44388771	44388771	A	C	SNP	FGF10	ENST00000264664	human	ensembl	74_37	-1	known	missense	c.14	p.I5R	1.000	NULL	pfam_Fibroblast_GF_fam,superfamily_Cytokine_IL1-like,smart_Fibroblast_GF_fam,prints_Fibroblast_GF_fam,prints_IL-1_fam/FGF_fam	-	no_errors	FGF10	HGNC	ENSG00000070193				69	0	0	165	26	13.6126
METTL24	0	genome.wustl.edu	37	6	110620262	110620262	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4366-01A-01D-1158-08	TCGA-BR-4366-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	eb78138d-9862-4c8e-ac8f-a5a2a31628cc	993d8925-5c1f-43d2-9000-0f6c8f754710	6	110620262	110620262	T	C	SNP	METTL24	ENST00000338882	human	ensembl	74_37	-1	known	missense	c.649	p.I217V	0.000	NULL	NULL	-	no_errors	METTL24	HGNC	ENSG00000053328				108	0	0	78	49	38.5827
KIAA0408	0	genome.wustl.edu	37	6	127775078	127775078	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-4366-01A-01D-1158-08	TCGA-BR-4366-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	eb78138d-9862-4c8e-ac8f-a5a2a31628cc	993d8925-5c1f-43d2-9000-0f6c8f754710	6	127775078	127775078	C	A	SNP	KIAA0408	ENST00000483725	human	ensembl	74_37	-1	novel	nonsense	c.49	p.E17*	1.000	NULL	NULL	-	no_errors	KIAA0408	HGNC	ENSG00000189367				181	0	0	211	40	15.9363
PEX3	0	genome.wustl.edu	37	6	143792193	143792193	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4366-01A-01D-1158-08	TCGA-BR-4366-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	eb78138d-9862-4c8e-ac8f-a5a2a31628cc	993d8925-5c1f-43d2-9000-0f6c8f754710	6	143792193	143792193	G	T	SNP	PEX3	ENST00000367591	human	ensembl	74_37	+1	known	missense	c.427	p.D143Y	1.000	pfam_Peroxin-3	pfam_Peroxin-3	-	no_errors	PEX3	HGNC	ENSG00000034693				131	0	0	145	79	35.2679
UST	0	genome.wustl.edu	37	6	149394999	149394999	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4366-01A-01D-1158-08	TCGA-BR-4366-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	eb78138d-9862-4c8e-ac8f-a5a2a31628cc	993d8925-5c1f-43d2-9000-0f6c8f754710	6	149394999	149394999	C	T	SNP	UST	ENST00000367463	human	ensembl	74_37	+1	known	missense	c.968	p.T323M	1.000	pfam_Sulfotransferase	pfam_Sulfotransferase,pfam_Gal-3-0_sulfotransfrase,superfamily_P-loop_NTPase	-	no_errors	UST	HGNC	ENSG00000111962				85	0	0	147	25	14.5349
KATNA1	0	genome.wustl.edu	37	6	149944303	149944303	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4366-01A-01D-1158-08	TCGA-BR-4366-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	eb78138d-9862-4c8e-ac8f-a5a2a31628cc	993d8925-5c1f-43d2-9000-0f6c8f754710	6	149944303	149944303	T	C	SNP	KATNA1	ENST00000335647	human	ensembl	74_37	-1	known	missense	c.437	p.N146S	0.997	NULL	pfam_ATPase_AAA_core,pfam_Vps4_C,pfam_ATPase_AAA-2,pfam_DNA_helicase_Holl-junc_RuvB_N,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	KATNA1	HGNC	ENSG00000186625				171	0	0	217	90	29.316
ARID1B	0	genome.wustl.edu	37	6	157527345	157527345	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-4366-01A-01D-1158-08	TCGA-BR-4366-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	eb78138d-9862-4c8e-ac8f-a5a2a31628cc	993d8925-5c1f-43d2-9000-0f6c8f754710	6	157527345	157527345	C	A	SNP	ARID1B	ENST00000367148	human	ensembl	74_37	+1	known	nonsense	c.5190	p.C1730*	1.000	NULL	pfam_DUF3518,pfam_ARID/BRIGHT_DNA-bd,superfamily_ARID/BRIGHT_DNA-bd,superfamily_ARM-type_fold,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID1B	HGNC	ENSG00000049618				462	1	0.215983	593	316	34.7635
CDYL	0	genome.wustl.edu	37	6	4954159	4954159	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4366-01A-01D-1158-08	TCGA-BR-4366-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	eb78138d-9862-4c8e-ac8f-a5a2a31628cc	993d8925-5c1f-43d2-9000-0f6c8f754710	6	4954159	4954159	C	T	SNP	CDYL	ENST00000328908	human	ensembl	74_37	+1	known	missense	c.1666	p.R556C	1.000	NULL	pfam_Crotonase_core_superfam,pfam_Chromo_domain,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,pfscan_Chromo_domain/shadow	-	no_errors	CDYL	HGNC	ENSG00000153046				40	0	0	46	4	8
DST	0	genome.wustl.edu	37	6	56469646	56469646	+	Silent	SNP	A	A	T			TCGA-BR-4366-01A-01D-1158-08	TCGA-BR-4366-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	eb78138d-9862-4c8e-ac8f-a5a2a31628cc	993d8925-5c1f-43d2-9000-0f6c8f754710	6	56469646	56469646	A	T	SNP	DST	ENST00000370754	human	ensembl	74_37	-1	known	silent	c.9681	p.I3227	0.000	superfamily_ABC1_TM_dom	pfam_Spectrin_repeat,pfam_Plectin_repeat,pfam_CH-domain,pfam_GAS2_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_GAS2_dom,superfamily_ABC1_TM_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,smart_EF_hand_dom,smart_GAS2_dom,pfscan_CH-domain,pfscan_EF_hand_dom	-	no_errors	DST	HGNC	ENSG00000151914				98	0	0	52	40	43.4783
RIMS1	0	genome.wustl.edu	37	6	72955550	72955550	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4366-01A-01D-1158-08	TCGA-BR-4366-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	eb78138d-9862-4c8e-ac8f-a5a2a31628cc	993d8925-5c1f-43d2-9000-0f6c8f754710	6	72955550	72955550	C	T	SNP	RIMS1	ENST00000521978	human	ensembl	74_37	+1	known	missense	c.2114	p.P705L	1.000	NULL	pfam_C2_dom,pfam_PDZ,superfamily_C2_dom,superfamily_Znf_FYVE_PHD,superfamily_PDZ,smart_PDZ,smart_C2_dom,pfscan_C2_dom,pfscan_PDZ,pfscan_Znf_FYVE-typ,pfscan_Znf_FYVE-rel	-	no_errors	RIMS1	HGNC	ENSG00000079841				61	0	0	63	5	7.35294
CHRM2	0	genome.wustl.edu	37	7	136700630	136700630	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4366-01A-01D-1158-08	TCGA-BR-4366-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	eb78138d-9862-4c8e-ac8f-a5a2a31628cc	993d8925-5c1f-43d2-9000-0f6c8f754710	7	136700630	136700630	A	G	SNP	CHRM2	ENST00000320658	human	ensembl	74_37	+1	known	missense	c.1018	p.T340A	0.002	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Musac_Ach_M2_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Musac_Ach_M2_rcpt,prints_Musac_Ach_rcpt,prints_GPCR_Rhodpsn	-	no_errors	CHRM2	HGNC	ENSG00000181072				116	0	0	116	25	17.7305
CNTNAP2	0	genome.wustl.edu	37	7	147869380	147869380	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-4366-01A-01D-1158-08	TCGA-BR-4366-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	eb78138d-9862-4c8e-ac8f-a5a2a31628cc	993d8925-5c1f-43d2-9000-0f6c8f754710	7	147869380	147869380	G	C	SNP	CNTNAP2	ENST00000361727	human	ensembl	74_37	+1	known	missense	c.2820	p.L940F	0.999	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,pfam_Coagulation_fac_5/8-C_type_dom,pfam_EG-like_dom,superfamily_Galactose-bd-like,superfamily_ConA-like_lec_gl_sf,superfamily_Fibrinogen_a/b/g_C_dom,smart_Coagulation_fac_5/8-C_type_dom,smart_Laminin_G,smart_EG-like_dom,smart_Neurexin-like,pfscan_EG-like_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_Laminin_G	-	no_errors	CNTNAP2	HGNC	ENSG00000174469				99	0	0	95	22	18.8034
TMUB1	0	genome.wustl.edu	37	7	150779627	150779627	+	Silent	SNP	A	A	G			TCGA-BR-4366-01A-01D-1158-08	TCGA-BR-4366-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	eb78138d-9862-4c8e-ac8f-a5a2a31628cc	993d8925-5c1f-43d2-9000-0f6c8f754710	7	150779627	150779627	A	G	SNP	TMUB1	ENST00000297533	human	ensembl	74_37	-1	known	silent	c.24	p.G8	0.995	NULL	pfam_Ubiquitin_dom,pfscan_Ubiquitin_supergroup	-	no_errors	TMUB1	HGNC	ENSG00000164897				76	0	0	67	32	32.3232
TAX1BP1	0	genome.wustl.edu	37	7	27832693	27832693	+	Silent	SNP	T	T	C			TCGA-BR-4366-01A-01D-1158-08	TCGA-BR-4366-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	eb78138d-9862-4c8e-ac8f-a5a2a31628cc	993d8925-5c1f-43d2-9000-0f6c8f754710	7	27832693	27832693	T	C	SNP	TAX1BP1	ENST00000396319	human	ensembl	74_37	+1	known	silent	c.1272	p.T424	0.856	pfam_CoCoA	pfam_CoCoA	-	no_errors	TAX1BP1	HGNC	ENSG00000106052				39	0	0	48	9	15.7895
IKZF1	0	genome.wustl.edu	37	7	50468108	50468108	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4366-01A-01D-1158-08	TCGA-BR-4366-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	eb78138d-9862-4c8e-ac8f-a5a2a31628cc	993d8925-5c1f-43d2-9000-0f6c8f754710	7	50468108	50468108	C	T	SNP	IKZF1	ENST00000331340	human	ensembl	74_37	+1	known	missense	c.1343	p.A448V	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	IKZF1	HGNC	ENSG00000185811				43	0	0	29	16	35.5556
CCDC132	0	genome.wustl.edu	37	7	92935138	92935138	+	Splice_Site	SNP	A	A	G			TCGA-BR-4366-01A-01D-1158-08	TCGA-BR-4366-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	eb78138d-9862-4c8e-ac8f-a5a2a31628cc	993d8925-5c1f-43d2-9000-0f6c8f754710	7	92935138	92935138	A	G	SNP	CCDC132	ENST00000305866	human	ensembl	74_37	+1	known	splice_site	c.1453-2	e18-2	1.000	-	-	-	no_errors	CCDC132	HGNC	ENSG00000004766				104	0	0	75	45	37.5
COL1A2	0	genome.wustl.edu	37	7	94059632	94059632	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4366-01A-01D-1158-08	TCGA-BR-4366-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	eb78138d-9862-4c8e-ac8f-a5a2a31628cc	993d8925-5c1f-43d2-9000-0f6c8f754710	7	94059632	94059632	A	C	SNP	COL1A2	ENST00000297268	human	ensembl	74_37	+1	known	missense	c.4028	p.D1343A	1.000	pfam_Fib_collagen_C,smart_Fib_collagen_C	pfam_Collagen,pfam_Fib_collagen_C,superfamily_Fibrinogen_a/b/g_C_dom,smart_Fib_collagen_C	-	no_errors	COL1A2	HGNC	ENSG00000164692				241	0	0	168	137	44.918
COL1A2	0	genome.wustl.edu	37	7	94059634	94059634	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-4366-01A-01D-1158-08	TCGA-BR-4366-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	eb78138d-9862-4c8e-ac8f-a5a2a31628cc	993d8925-5c1f-43d2-9000-0f6c8f754710	7	94059634	94059634	A	T	SNP	COL1A2	ENST00000297268	human	ensembl	74_37	+1	known	missense	c.4030	p.I1344F	1.000	pfam_Fib_collagen_C,smart_Fib_collagen_C	pfam_Collagen,pfam_Fib_collagen_C,superfamily_Fibrinogen_a/b/g_C_dom,smart_Fib_collagen_C	-	no_errors	COL1A2	HGNC	ENSG00000164692				244	0	0	173	137	44.1935
DCAF13	0	genome.wustl.edu	37	8	104427572	104427572	+	Silent	SNP	T	T	G			TCGA-BR-4366-01A-01D-1158-08	TCGA-BR-4366-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	eb78138d-9862-4c8e-ac8f-a5a2a31628cc	993d8925-5c1f-43d2-9000-0f6c8f754710	8	104427572	104427572	T	G	SNP	DCAF13	ENST00000297579	human	ensembl	74_37	+1	known	silent	c.354	p.T118	0.984	NULL	pfam_Sof1,pfam_WD40_repeat,pfam_TIF_beta_prop-like,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DCAF13	HGNC	ENSG00000164934				127	0	0	175	22	11.1675
DEFB136	0	genome.wustl.edu	37	8	11831582	11831582	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-4366-01A-01D-1158-08	TCGA-BR-4366-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	eb78138d-9862-4c8e-ac8f-a5a2a31628cc	993d8925-5c1f-43d2-9000-0f6c8f754710	8	11831582	11831582	G	C	SNP	DEFB136	ENST00000382209	human	ensembl	74_37	-1	known	missense	c.101	p.T34S	0.013	NULL	NULL	-	no_errors	DEFB136	HGNC	ENSG00000205884				261	0	0	340	74	17.8744
FAM135B	0	genome.wustl.edu	37	8	139164785	139164785	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4366-01A-01D-1158-08	TCGA-BR-4366-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	eb78138d-9862-4c8e-ac8f-a5a2a31628cc	993d8925-5c1f-43d2-9000-0f6c8f754710	8	139164785	139164785	T	G	SNP	FAM135B	ENST00000395297	human	ensembl	74_37	-1	known	missense	c.1933	p.S645R	0.000	NULL	pfam_DUF676_lipase-like,pfam_DUF3657,pfam_PGAP1-like	-	no_errors	FAM135B	HGNC	ENSG00000147724				143	0	0	178	65	26.749
RECQL4	0	genome.wustl.edu	37	8	145741255	145741255	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4366-01A-01D-1158-08	TCGA-BR-4366-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	eb78138d-9862-4c8e-ac8f-a5a2a31628cc	993d8925-5c1f-43d2-9000-0f6c8f754710	8	145741255	145741255	C	T	SNP	RECQL4	ENST00000428558	human	ensembl	74_37	-1	known	missense	c.1151	p.R384Q	1.000	NULL	pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_DNA_rep_checkpnt_protein,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,tigrfam_DNA_helicase_ATP-dep_RecQ	-	no_errors	RECQL4	HGNC	ENSG00000160957				42	0	0	36	11	23.4043
SCARA3	0	genome.wustl.edu	37	8	27528492	27528492	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4366-01A-01D-1158-08	TCGA-BR-4366-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	eb78138d-9862-4c8e-ac8f-a5a2a31628cc	993d8925-5c1f-43d2-9000-0f6c8f754710	8	27528492	27528492	C	T	SNP	SCARA3	ENST00000301904	human	ensembl	74_37	+1	known	missense	c.1445	p.P482L	0.790	pfam_Collagen	pfam_Collagen	-	no_errors	SCARA3	HGNC	ENSG00000168077				163	0	0	163	76	31.7992
SNORD13	0	genome.wustl.edu	37	8	33371050	33371050	+	RNA	SNP	G	G	A			TCGA-BR-4366-01A-01D-1158-08	TCGA-BR-4366-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	eb78138d-9862-4c8e-ac8f-a5a2a31628cc	993d8925-5c1f-43d2-9000-0f6c8f754710	8	33371050	33371050	G	A	SNP	SNORD13	ENST00000459299	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.884	-	-	-	no_errors	SNORD13	HGNC	ENSG00000239039				107	0	0	148	77	34.2222
CSPP1	0	genome.wustl.edu	37	8	68084687	68084687	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-4366-01A-01D-1158-08	TCGA-BR-4366-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	eb78138d-9862-4c8e-ac8f-a5a2a31628cc	993d8925-5c1f-43d2-9000-0f6c8f754710	8	68084687	68084687	G	C	SNP	CSPP1	ENST00000262210	human	ensembl	74_37	+1	known	missense	c.2850	p.M950I	1.000	NULL	NULL	-	no_errors	CSPP1	HGNC	ENSG00000104218				119	0	0	131	22	14.3791
STAU2	0	genome.wustl.edu	37	8	74516095	74516095	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4366-01A-01D-1158-08	TCGA-BR-4366-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	eb78138d-9862-4c8e-ac8f-a5a2a31628cc	993d8925-5c1f-43d2-9000-0f6c8f754710	8	74516095	74516095	C	T	SNP	STAU2	ENST00000524300	human	ensembl	74_37	-1	known	missense	c.895	p.G299R	1.000	NULL	pfam_dsRNA-bd_dom,smart_dsRNA-bd_dom,pfscan_dsRNA-bd_dom	-	no_errors	STAU2	HGNC	ENSG00000040341				67	0	0	83	32	27.8261
CNBD1	0	genome.wustl.edu	37	8	88365898	88365898	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4366-01A-01D-1158-08	TCGA-BR-4366-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	eb78138d-9862-4c8e-ac8f-a5a2a31628cc	993d8925-5c1f-43d2-9000-0f6c8f754710	8	88365898	88365898	T	C	SNP	CNBD1	ENST00000518476	human	ensembl	74_37	+1	known	missense	c.1187	p.L396P	0.229	pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,pfscan_cNMP-bd_dom	pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,pfscan_cNMP-bd_dom	-	no_errors	CNBD1	HGNC	ENSG00000176571				74	0	0	77	34	30.6306
CDKN2A	0	genome.wustl.edu	37	9	21971119	21971119	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4366-01A-01D-1158-08	TCGA-BR-4366-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	eb78138d-9862-4c8e-ac8f-a5a2a31628cc	993d8925-5c1f-43d2-9000-0f6c8f754710	9	21971119	21971119	C	T	SNP	CDKN2A	ENST00000446177	human	ensembl	74_37	-1	known	missense	c.239	p.R80Q	0.875	superfamily_Ankyrin_rpt-contain_dom,pfscan_Ankyrin_rpt-contain_dom	superfamily_Ankyrin_rpt-contain_dom,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	CDKN2A	HGNC	ENSG00000147889				26	0	0	27	28	50.9091
NOL6	0	genome.wustl.edu	37	9	33466322	33466322	+	Silent	SNP	G	G	A			TCGA-BR-4366-01A-01D-1158-08	TCGA-BR-4366-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	eb78138d-9862-4c8e-ac8f-a5a2a31628cc	993d8925-5c1f-43d2-9000-0f6c8f754710	9	33466322	33466322	G	A	SNP	NOL6	ENST00000297990	human	ensembl	74_37	-1	known	silent	c.2193	p.Y731	0.942	pfam_Nrap	pfam_Nrap	-	no_errors	NOL6	HGNC	ENSG00000165271				156	0	0	104	74	41.573
AK3	0	genome.wustl.edu	37	9	4741007	4741007	+	Silent	SNP	G	G	A			TCGA-BR-4366-01A-01D-1158-08	TCGA-BR-4366-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	eb78138d-9862-4c8e-ac8f-a5a2a31628cc	993d8925-5c1f-43d2-9000-0f6c8f754710	9	4741007	4741007	G	A	SNP	AK3	ENST00000381809	human	ensembl	74_37	-1	known	silent	c.81	p.I27	0.982	pfam_Adenylate_kin,superfamily_P-loop_NTPase,tigrfam_Adenyl_kin_sub	pfam_Adenylate_kin,pfam_Adenylate_kinase_lid-dom,superfamily_P-loop_NTPase,superfamily_Adenylate_kinase_lid-dom,prints_Adenylate_kin,tigrfam_Adenyl_kin_sub	-	no_errors	AK3	HGNC	ENSG00000147853				16	0	0	19	11	36.6667
GLDC	0	genome.wustl.edu	37	9	6610217	6610217	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4366-01A-01D-1158-08	TCGA-BR-4366-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	eb78138d-9862-4c8e-ac8f-a5a2a31628cc	993d8925-5c1f-43d2-9000-0f6c8f754710	9	6610217	6610217	C	A	SNP	GLDC	ENST00000321612	human	ensembl	74_37	-1	known	missense	c.610	p.A204S	1.000	pfam_GDC-P_N,superfamily_PyrdxlP-dep_Trfase,tigrfam_GDC_P_homo	pfam_GDC-P_N,pfam_ArAA_b-elim_lyase/Thr_aldolase,superfamily_PyrdxlP-dep_Trfase,tigrfam_GDC_P_homo	-	no_errors	GLDC	HGNC	ENSG00000178445				26	0	0	24	17	41.4634
SEMA4D	0	genome.wustl.edu	37	9	91993768	91993768	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4366-01A-01D-1158-08	TCGA-BR-4366-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	eb78138d-9862-4c8e-ac8f-a5a2a31628cc	993d8925-5c1f-43d2-9000-0f6c8f754710	9	91993768	91993768	C	T	SNP	SEMA4D	ENST00000356444	human	ensembl	74_37	-1	known	missense	c.2440	p.G814S	1.000	NULL	pfam_Semap_dom,pfam_Plexin_repeat,pfam_Immunoglobulin,superfamily_Semap_dom,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_Ig_sub,smart_Ig_sub2,pfscan_Semap_dom,pfscan_Ig-like_dom	-	no_errors	SEMA4D	HGNC	ENSG00000187764				139	0	0	112	56	33.3333
LINC00475	0	genome.wustl.edu	37	9	94907220	94907220	+	RNA	SNP	G	G	A			TCGA-BR-4366-01A-01D-1158-08	TCGA-BR-4366-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	eb78138d-9862-4c8e-ac8f-a5a2a31628cc	993d8925-5c1f-43d2-9000-0f6c8f754710	9	94907220	94907220	G	A	SNP	LINC00475	ENST00000438322	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.020	-	-	-	no_errors	LINC00475	HGNC	ENSG00000225511				35	0	0	7	20	74.0741
FRMPD4	0	genome.wustl.edu	37	X	12736052	12736052	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-4366-01A-01D-1158-08	TCGA-BR-4366-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	eb78138d-9862-4c8e-ac8f-a5a2a31628cc	993d8925-5c1f-43d2-9000-0f6c8f754710	X	12736052	12736052	G	C	SNP	FRMPD4	ENST00000380682	human	ensembl	74_37	+1	known	missense	c.3107	p.G1036A	1.000	NULL	pfam_FERM_central,pfam_PDZ,superfamily_FERM_central,superfamily_PDZ,smart_PDZ,smart_Band_41_domain,pfscan_FERM_domain,pfscan_PDZ,pfscan_WW_dom	-	no_errors	FRMPD4	HGNC	ENSG00000169933				79	0	0	26	78	75
FANCB	0	genome.wustl.edu	37	X	14883234	14883234	+	Silent	SNP	G	G	A			TCGA-BR-4366-01A-01D-1158-08	TCGA-BR-4366-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	eb78138d-9862-4c8e-ac8f-a5a2a31628cc	993d8925-5c1f-43d2-9000-0f6c8f754710	X	14883234	14883234	G	A	SNP	FANCB	ENST00000324138	human	ensembl	74_37	-1	known	silent	c.399	p.G133	0.000	NULL	NULL	-	no_errors	FANCB	HGNC	ENSG00000181544				38	0	0	11	49	81.6667
P2RY8	0	genome.wustl.edu	37	X	1585028	1585028	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4366-01A-01D-1158-08	TCGA-BR-4366-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	eb78138d-9862-4c8e-ac8f-a5a2a31628cc	993d8925-5c1f-43d2-9000-0f6c8f754710	X	1585028	1585028	C	A	SNP	P2RY8	ENST00000381297	human	ensembl	74_37	-1	known	missense	c.424	p.A142S	0.033	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_Protea_act_rcpt	-	no_errors	P2RY8	HGNC	ENSG00000182162				21	0	0	34	16	32
NHS	0	genome.wustl.edu	37	X	17745707	17745707	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4366-01A-01D-1158-08	TCGA-BR-4366-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	eb78138d-9862-4c8e-ac8f-a5a2a31628cc	993d8925-5c1f-43d2-9000-0f6c8f754710	X	17745707	17745707	G	A	SNP	NHS	ENST00000380060	human	ensembl	74_37	+1	known	missense	c.3418	p.D1140N	0.204	NULL	NULL	-	no_errors	NHS	HGNC	ENSG00000188158				111	0	0	95	49	34.0278
MAOA	0	genome.wustl.edu	37	X	43603732	43603732	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-4366-01A-01D-1158-08	TCGA-BR-4366-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	eb78138d-9862-4c8e-ac8f-a5a2a31628cc	993d8925-5c1f-43d2-9000-0f6c8f754710	X	43603732	43603732	A	T	SNP	MAOA	ENST00000338702	human	ensembl	74_37	+1	known	missense	c.1556	p.Y519F	0.083	NULL	pfam_Amino_oxidase,pfam_FAD-dep_OxRdtase,pfam_mOase_FAD-bd,pfam_Pyr_OxRdtase_NAD-bd_dom,pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,pfam_FAD_bind_dom,prints_Flavin_amine_oxidase	-	no_errors	MAOA	HGNC	ENSG00000189221				75	0	0	93	7	7
PABPC5	0	genome.wustl.edu	37	X	90690690	90690690	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4366-01A-01D-1158-08	TCGA-BR-4366-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	eb78138d-9862-4c8e-ac8f-a5a2a31628cc	993d8925-5c1f-43d2-9000-0f6c8f754710	X	90690690	90690690	C	A	SNP	PABPC5	ENST00000312600	human	ensembl	74_37	+1	known	missense	c.114	p.F38L	1.000	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,tigrfam_PABP_1234	pfam_RRM_dom,smart_RRM_dom,smart_RRM_dom_euk,pfscan_RRM_dom,tigrfam_PABP_1234	-	no_errors	PABPC5	HGNC	ENSG00000174740				23	0	0	6	20	76.9231
PABPC5	0	genome.wustl.edu	37	X	90690691	90690691	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4366-01A-01D-1158-08	TCGA-BR-4366-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	eb78138d-9862-4c8e-ac8f-a5a2a31628cc	993d8925-5c1f-43d2-9000-0f6c8f754710	X	90690691	90690691	A	G	SNP	PABPC5	ENST00000312600	human	ensembl	74_37	+1	known	missense	c.115	p.R39G	1.000	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,tigrfam_PABP_1234	pfam_RRM_dom,smart_RRM_dom,smart_RRM_dom_euk,pfscan_RRM_dom,tigrfam_PABP_1234	-	no_errors	PABPC5	HGNC	ENSG00000174740				23	0	0	6	20	76.9231
VEZT	0	genome.wustl.edu	37	12	95660288	95660289	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-4366-01A-01D-1158-08	TCGA-BR-4366-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	eb78138d-9862-4c8e-ac8f-a5a2a31628cc	993d8925-5c1f-43d2-9000-0f6c8f754710	12	95660288	95660289	-	A	INS	VEZT	ENST00000436874	human	ensembl	74_37	+1	known	frame_shift_ins	c.590_591	p.Y200fs	0.994:0.911	NULL	NULL	-	no_errors	VEZT	HGNC	ENSG00000028203				231	0	0	245	69	21.9745
ENSG00000259479	0	genome.wustl.edu	37	15	45123755	45123756	+	RNA	INS	-	-	C			TCGA-BR-4366-01A-01D-1158-08	TCGA-BR-4366-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	eb78138d-9862-4c8e-ac8f-a5a2a31628cc	993d8925-5c1f-43d2-9000-0f6c8f754710	15	45123755	45123756	-	C	INS	ENSG00000259479	ENST00000561384	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.632:0.983	-	-	-	no_errors	CTD-2008A1.2	Clone_based_vega_gene	ENSG00000259479				15	0	0	3	4	57.1429
LINC00969	0	genome.wustl.edu	37	3	195400814	195400815	+	Splice_Site	INS	-	-	TT			TCGA-BR-4366-01A-01D-1158-08	TCGA-BR-4366-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	eb78138d-9862-4c8e-ac8f-a5a2a31628cc	993d8925-5c1f-43d2-9000-0f6c8f754710	3	195400814	195400815	-	TT	INS	LINC00969	ENST00000414625	human	ensembl	74_37	+1	known	splice_site_ins	c.NULL	NULL	0.999:1.000	-	-	-	no_errors	LINC00969	HGNC	ENSG00000242086				27	0	0	50	9	15.2542
PRKG2	0	genome.wustl.edu	37	4	82065441	82065442	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-4366-01A-01D-1158-08	TCGA-BR-4366-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	eb78138d-9862-4c8e-ac8f-a5a2a31628cc	993d8925-5c1f-43d2-9000-0f6c8f754710	4	82065441	82065442	-	T	INS	PRKG2	ENST00000264399	human	ensembl	74_37	-1	known	frame_shift_ins	c.1198_1197	p.Y399fs	1.000:0.995	superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pirsf_cGMP-dependent_protein_kinase,pfscan_cNMP-bd_dom,prints_cGMP_dep_kinase,prints_cAMP/cGMP_kin	pfam_Prot_kinase_dom,pfam_cNMP-bd_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_cGMP-dependent_protein_kinase,pfscan_cNMP-bd_dom,pfscan_Prot_kinase_dom,prints_cGMP_dep_kinase,prints_cAMP/cGMP_kin	-	no_errors	PRKG2	HGNC	ENSG00000138669				199	0	0	151	31	17.033
