Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
AGL	0	genome.wustl.edu	37	1	100336320	100336320	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	1	100336320	100336320	C	T	SNP	AGL	ENST00000294724	human	ensembl	74_37	+1	known	nonsense	c.853	p.R285*	1.000	superfamily_Glycoside_hydrolase_SF,tigrfam_Glycogen_debranch_met	pfam_AGL/Gdb1,superfamily_6-hairpin_glycosidase-like,superfamily_Glycoside_hydrolase_SF,tigrfam_Glycogen_debranch_met	-	no_errors	AGL	HGNC	ENSG00000162688				65	0	0	45	7	13.4615
SASS6	0	genome.wustl.edu	37	1	100568561	100568561	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	1	100568561	100568561	G	T	SNP	SASS6	ENST00000287482	human	ensembl	74_37	-1	known	missense	c.1624	p.P542T	0.434	NULL	NULL	-	no_errors	SASS6	HGNC	ENSG00000156876				186	0	0	106	29	21.4815
VCAM1	0	genome.wustl.edu	37	1	101186087	101186087	+	Silent	SNP	T	T	C			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	1	101186087	101186087	T	C	SNP	VCAM1	ENST00000294728	human	ensembl	74_37	+1	known	silent	c.120	p.G40	0.249	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom,prints_ICAM_VCAM_N	pfam_Ig_I-set,pfam_Ig_C2-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like_dom,prints_VCAM-1,prints_ICAM_VCAM_N	-	no_errors	VCAM1	HGNC	ENSG00000162692				204	0	0	109	37	25.3425
SARS	0	genome.wustl.edu	37	1	109774120	109774120	+	RNA	SNP	G	G	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	1	109774120	109774120	G	T	SNP	SARS	ENST00000471705	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SARS	HGNC	ENSG00000031698				41	0	0	16	7	30.4348
SARS	0	genome.wustl.edu	37	1	109777940	109777940	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	1	109777940	109777940	C	T	SNP	SARS	ENST00000369923	human	ensembl	74_37	+1	known	missense	c.856	p.R286W	0.953	pfam_aa-tRNA-synt_IIb_cons-dom,pirsf_Ser-tRNA-ligase_type_1,pfscan_aa-tRNA-synth_II,tigrfam_Ser-tRNA-ligase_type_1	pfam_aa-tRNA-synt_IIb_cons-dom,pfam_Ser-tRNA-synth_1_N,superfamily_tRNA-bd_arm,pirsf_Ser-tRNA-ligase_type_1,pfscan_aa-tRNA-synth_II,prints_Ser-tRNA-ligase_type_1,tigrfam_Ser-tRNA-ligase_type_1	-	no_errors	SARS	HGNC	ENSG00000031698				166	0	0	126	30	19.2308
CELSR2	0	genome.wustl.edu	37	1	109806835	109806835	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	1	109806835	109806835	G	A	SNP	CELSR2	ENST00000271332	human	ensembl	74_37	+1	known	missense	c.5137	p.G1713S	0.980	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,pfscan_Laminin_G	pfam_Cadherin,pfam_DUF3497,pfam_Laminin_G,pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_EG-like_dom,pfam_EGF_laminin,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,smart_EGF_laminin,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_GPS_dom,pfscan_Laminin_G,pfscan_Cadherin,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_Cadherin,prints_GPCR_2_secretin-like	-	no_errors	CELSR2	HGNC	ENSG00000143126				119	0	0	80	14	14.8936
PSRC1	0	genome.wustl.edu	37	1	109824371	109824371	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	1	109824371	109824371	G	A	SNP	PSRC1	ENST00000409138	human	ensembl	74_37	-1	known	missense	c.389	p.T130I	1.000	NULL	NULL	-	no_errors	PSRC1	HGNC	ENSG00000134222				184	1	0.540541	114	26	18.5714
RBM15	0	genome.wustl.edu	37	1	110883026	110883026	+	Silent	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	1	110883026	110883026	C	T	SNP	RBM15	ENST00000369784	human	ensembl	74_37	+1	known	silent	c.999	p.Y333	0.106	NULL	pfam_SPOC_C,pfam_RRM_dom,superfamily_SPOC_like_C_dom,smart_RRM_dom,pfscan_SPOC_met,pfscan_RRM_dom	-	no_errors	RBM15	HGNC	ENSG00000162775				166	0	0	105	14	11.7647
RAP1A	0	genome.wustl.edu	37	1	112246040	112246040	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	1	112246040	112246040	C	T	SNP	RAP1A	ENST00000356415	human	ensembl	74_37	+1	known	missense	c.266	p.T89M	1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAP1A	HGNC	ENSG00000116473				135	0	0	78	20	20.4082
TRIM33	0	genome.wustl.edu	37	1	114969882	114969882	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	1	114969882	114969882	C	T	SNP	TRIM33	ENST00000358465	human	ensembl	74_37	-1	known	missense	c.1337	p.R446Q	0.978	NULL	pfam_Bromodomain,pfam_Znf_B-box,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_Znf_RING,smart_Znf_B-box,smart_Bbox_C,smart_Bromodomain,pfscan_Znf_B-box,pfscan_Znf_PHD-finger,pfscan_Znf_RING,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	TRIM33	HGNC	ENSG00000197323				157	0	0	104	20	16.129
PTCHD2	0	genome.wustl.edu	37	1	11589888	11589888	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	1	11589888	11589888	G	A	SNP	PTCHD2	ENST00000294484	human	ensembl	74_37	+1	known	missense	c.2974	p.V992M	1.000	NULL	pfam_Patched,pfam_MMPL_dom,pfscan_SSD	-	no_errors	PTCHD2	HGNC	ENSG00000204624				83	0	0	52	9	14.7541
NHLH2	0	genome.wustl.edu	37	1	116380938	116380938	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	1	116380938	116380938	G	A	SNP	NHLH2	ENST00000320238	human	ensembl	74_37	-1	known	missense	c.56	p.S19L	1.000	NULL	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	NHLH2	HGNC	ENSG00000177551				41	0	0	28	5	15.1515
UBE2J2	0	genome.wustl.edu	37	1	1190730	1190730	+	Silent	SNP	C	C	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	1	1190730	1190730	C	A	SNP	UBE2J2	ENST00000400930	human	ensembl	74_37	-1	known	silent	c.681	p.G227	0.105	NULL	pfam_UBQ-conjugat_E2,superfamily_UBQ-conjugating_enzyme/RWD,pfscan_UBQ-conjugat_E2	-	no_errors	UBE2J2	HGNC	ENSG00000160087				154	0	0	96	27	21.9512
WARS2	0	genome.wustl.edu	37	1	119575803	119575803	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	1	119575803	119575803	C	T	SNP	WARS2	ENST00000235521	human	ensembl	74_37	-1	known	missense	c.814	p.V272M	1.000	pfam_aa-tRNA-synth_Ic,tigrfam_Trp-tRNA-ligase	pfam_aa-tRNA-synth_Ic,prints_Trp-tRNA-ligase,tigrfam_Trp-tRNA-ligase	-	no_errors	WARS2	HGNC	ENSG00000116874				129	0	0	72	26	26.5306
ADAM30	0	genome.wustl.edu	37	1	120436658	120436658	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	1	120436658	120436658	G	A	SNP	ADAM30	ENST00000369400	human	ensembl	74_37	-1	known	nonsense	c.2302	p.Q768*	0.000	NULL	pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_ADAM_Cys-rich,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_EG-like_dom,pfscan_Peptidase_M12B,prints_Blood-coag_inhib_Disintegrin	-	no_errors	ADAM30	HGNC	ENSG00000134249				613	0	0	394	89	18.4265
NOTCH2	0	genome.wustl.edu	37	1	120462980	120462980	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	1	120462980	120462980	A	T	SNP	NOTCH2	ENST00000256646	human	ensembl	74_37	-1	known	missense	c.5351	p.I1784N	0.339	pirsf_Notch	pirsf_Notch,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,pfam_Ankyrin_rpt,pfam_Notch_NOD_dom,pfam_DUF3454_notch,pfam_Notch_NODP_dom,pfam_EGF_extracell,superfamily_Ankyrin_rpt-contain_dom,superfamily_Notch_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Notch_dom,smart_Ankyrin_rpt,prints_Notch_2,prints_Notch_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_EG-like_dom,pfscan_Notch_dom	-	no_errors	NOTCH2	HGNC	ENSG00000134250				130	0	0	77	23	23
MFN2	0	genome.wustl.edu	37	1	12061540	12061540	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	1	12061540	12061540	G	A	SNP	MFN2	ENST00000235329	human	ensembl	74_37	+1	known	missense	c.899	p.R300H	1.000	superfamily_P-loop_NTPase	pfam_Fzo/mitofusin_HR2,pfam_Dynamin_GTPase,superfamily_P-loop_NTPase	-	no_errors	MFN2	HGNC	ENSG00000116688				55	0	0	27	7	20.5882
PRDM2	0	genome.wustl.edu	37	1	14106911	14106911	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	1	14106911	14106911	C	T	SNP	PRDM2	ENST00000235372	human	ensembl	74_37	+1	known	missense	c.2621	p.T874M	0.219	pirsf_RIZ_retinblastoma-bd_prot	pfam_SET_dom,smart_SET_dom,smart_Znf_C2H2-like,pirsf_RIZ_retinblastoma-bd_prot,pfscan_SET_dom,pfscan_Znf_C2H2	-	no_errors	PRDM2	HGNC	ENSG00000116731				155	0	0	101	34	25.1852
PDE4DIP	0	genome.wustl.edu	37	1	144922006	144922006	+	Silent	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	1	144922006	144922006	C	T	SNP	PDE4DIP	ENST00000369356	human	ensembl	74_37	-1	known	silent	c.1023	p.L341	1.000	NULL	pfam_Spindle_assoc,superfamily_ARM-type_fold	-	no_errors	PDE4DIP	HGNC	ENSG00000178104				361	0	0	227	33	12.6923
HFE2	0	genome.wustl.edu	37	1	145416569	145416569	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	1	145416569	145416569	C	T	SNP	HFE2	ENST00000336751	human	ensembl	74_37	+1	known	missense	c.914	p.A305V	0.991	pfam_RGM_C	pfam_RGM_N,pfam_RGM_C	-	no_errors	HFE2	HGNC	ENSG00000168509				142	0	0	123	8	6.10687
ANKRD35	0	genome.wustl.edu	37	1	145562723	145562723	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	1	145562723	145562723	G	A	SNP	ANKRD35	ENST00000355594	human	ensembl	74_37	+1	known	missense	c.2411	p.S804N	1.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	ANKRD35	HGNC	ENSG00000198483				28	0	0	25	7	21.875
GJA5	0	genome.wustl.edu	37	1	147231341	147231341	+	Silent	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	1	147231341	147231341	G	A	SNP	GJA5	ENST00000271348	human	ensembl	74_37	-1	known	silent	c.6	p.G2	0.422	NULL	pfam_Connexin_N,pfam_Connexin_CCC,smart_Connexin_N,prints_Connexin,prints_Connexin40	-	no_errors	GJA5	HGNC	ENSG00000143140				128	0	0	83	13	13.5417
MTMR11	0	genome.wustl.edu	37	1	149905749	149905749	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	1	149905749	149905749	G	A	SNP	MTMR11	ENST00000439741	human	ensembl	74_37	-1	known	missense	c.770	p.P257L	1.000	pfam_Myotubularin-like_Pase_dom	pfam_Myotubularin_assoc,pfam_Myotubularin-like_Pase_dom	-	no_errors	MTMR11	HGNC	ENSG00000014914				343	1	0.290698	205	45	18
OTUD7B	0	genome.wustl.edu	37	1	149939441	149939441	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	1	149939441	149939441	G	A	SNP	OTUD7B	ENST00000369135	human	ensembl	74_37	-1	known	missense	c.280	p.R94C	1.000	NULL	pfam_OTU,superfamily_UBA-like,smart_Znf_A20,pfscan_OTU,pfscan_Znf_A20	-	no_errors	OTUD7B	HGNC	ENSG00000163113				69	0	0	60	18	23.0769
ANP32E	0	genome.wustl.edu	37	1	150199124	150199124	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	1	150199124	150199124	C	T	SNP	ANP32E	ENST00000314136	human	ensembl	74_37	-1	known	missense	c.497	p.G166D	0.657	NULL	pfam_Leu-rich_rpt	-	no_errors	ANP32E	HGNC	ENSG00000143401				99	0	0	50	10	16.6667
TARS2	0	genome.wustl.edu	37	1	150476841	150476841	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	1	150476841	150476841	C	T	SNP	TARS2	ENST00000369064	human	ensembl	74_37	+1	known	missense	c.1648	p.R550W	0.955	pfscan_aa-tRNA-synth_II,prints_Thr-tRNA-ligase_IIa,tigrfam_Thr-tRNA-ligase_IIa	pfam_aa-tRNA-synt_IIb_cons-dom,pfam_Anticodon-bd,pfam_TGS,pfam_tRNA_SAD,superfamily_Thr/Ala-tRNA-synth_IIc_edit,superfamily_Anticodon-bd,superfamily_TGS-like,smart_tRNA_SAD,pfscan_aa-tRNA-synth_II,prints_Thr-tRNA-ligase_IIa,tigrfam_Thr-tRNA-ligase_IIa	-	no_errors	TARS2	HGNC	ENSG00000143374				83	0	0	52	10	16.129
TARS2	0	genome.wustl.edu	37	1	150479415	150479415	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	1	150479415	150479415	A	G	SNP	TARS2	ENST00000369064	human	ensembl	74_37	+1	known	missense	c.2032	p.K678E	0.000	pfam_Anticodon-bd,superfamily_Anticodon-bd,tigrfam_Thr-tRNA-ligase_IIa	pfam_aa-tRNA-synt_IIb_cons-dom,pfam_Anticodon-bd,pfam_TGS,pfam_tRNA_SAD,superfamily_Thr/Ala-tRNA-synth_IIc_edit,superfamily_Anticodon-bd,superfamily_TGS-like,smart_tRNA_SAD,pfscan_aa-tRNA-synth_II,prints_Thr-tRNA-ligase_IIa,tigrfam_Thr-tRNA-ligase_IIa	-	no_errors	TARS2	HGNC	ENSG00000143374				105	1	0.943396	61	19	23.75
TCHH	0	genome.wustl.edu	37	1	152081942	152081942	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	1	152081942	152081942	G	A	SNP	TCHH	ENST00000368804	human	ensembl	74_37	-1	known	missense	c.3751	p.R1251W	0.000	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom	-	no_errors	TCHH	HGNC	ENSG00000159450				170	0	0	116	35	23.1788
FLG2	0	genome.wustl.edu	37	1	152329498	152329498	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	1	152329498	152329498	T	C	SNP	FLG2	ENST00000388718	human	ensembl	74_37	-1	known	missense	c.764	p.Q255R	0.922	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom,prints_Filaggrin	-	no_errors	FLG2	HGNC	ENSG00000143520				293	0	0	191	53	21.7213
DENND4B	0	genome.wustl.edu	37	1	153912194	153912194	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	1	153912194	153912194	G	A	SNP	DENND4B	ENST00000361217	human	ensembl	74_37	-1	known	missense	c.1690	p.R564C	1.000	pfam_dDENN_dom,smart_dDENN_dom,pfscan_dDENN_dom	pfam_DENN_dom,pfam_dDENN_dom,pfam_uDENN_dom,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom	-	no_errors	DENND4B	HGNC	ENSG00000198837				116	0	0	60	13	17.8082
SLC39A1	0	genome.wustl.edu	37	1	153932959	153932959	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	1	153932959	153932959	G	A	SNP	SLC39A1	ENST00000310483	human	ensembl	74_37	-1	known	missense	c.590	p.A197V	0.989	pfam_ZIP	pfam_ZIP	-	no_errors	SLC39A1	HGNC	ENSG00000143570				83	0	0	52	13	20
PKLR	0	genome.wustl.edu	37	1	155264954	155264954	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	1	155264954	155264954	C	T	SNP	PKLR	ENST00000342741	human	ensembl	74_37	-1	known	missense	c.647	p.R216H	0.951	pfam_Pyrv_Knase_brl,superfamily_Pyrv/PenolPyrv_Kinase-like_dom,superfamily_Pyrv_Knase-like_insert_dom,tigrfam_Pyr_Knase	pfam_Pyrv_Knase_brl,pfam_Pyrv_Knase_C,superfamily_Pyrv/PenolPyrv_Kinase-like_dom,superfamily_Pyrv_Knase_C,superfamily_Pyrv_Knase-like_insert_dom,prints_Pyr_Knase,tigrfam_Pyr_Knase	-	no_errors	PKLR	HGNC	ENSG00000143627				205	1	0.485437	111	37	25
ARHGEF2	0	genome.wustl.edu	37	1	155927507	155927507	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	1	155927507	155927507	C	T	SNP	ARHGEF2	ENST00000368315	human	ensembl	74_37	-1	known	missense	c.1715	p.R572H	0.999	smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_DH-domain,pfam_Pleckstrin_homology,superfamily_DH-domain,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_DH-domain	-	no_errors	ARHGEF2	HGNC	ENSG00000116584				92	0	0	54	14	20.5882
BCAN	0	genome.wustl.edu	37	1	156621478	156621478	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	1	156621478	156621478	C	A	SNP	BCAN	ENST00000329117	human	ensembl	74_37	+1	known	missense	c.1294	p.L432I	0.834	NULL	pfam_Link,pfam_C-type_lectin,pfam_Ig_V-set,pfam_Sushi_SCR_CCP,pfam_EG-like_dom,superfamily_C-type_lectin_fold,superfamily_Sushi_SCR_CCP,smart_Ig_sub,smart_Ig_V-set_subgr,smart_Link,smart_EG-like_dom,smart_C-type_lectin,smart_Sushi_SCR_CCP,prints_Link,prints_AntifreezeII,pfscan_EG-like_dom,pfscan_C-type_lectin,pfscan_Link,pfscan_Sushi_SCR_CCP,pfscan_Ig-like_dom	-	no_errors	BCAN	HGNC	ENSG00000132692				192	1	0.518135	110	40	26.6667
CRABP2	0	genome.wustl.edu	37	1	156670692	156670692	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	1	156670692	156670692	G	A	SNP	CRABP2	ENST00000368221	human	ensembl	74_37	-1	known	nonsense	c.223	p.Q75*	1.000	pfam_Lipocln_cytosolic_FA-bd_dom,superfamily_Calycin-like,prints_Fatty_acid-bd	pfam_Lipocln_cytosolic_FA-bd_dom,superfamily_Calycin-like,prints_Fatty_acid-bd	-	no_errors	CRABP2	HGNC	ENSG00000143320				128	0	0	69	28	28.866
ISG20L2	0	genome.wustl.edu	37	1	156693132	156693132	+	RNA	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	1	156693132	156693132	C	T	SNP	ISG20L2	ENST00000472824	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ISG20L2	HGNC	ENSG00000143319				368	0	0	213	59	21.6912
SH2D2A	0	genome.wustl.edu	37	1	156779494	156779494	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	1	156779494	156779494	C	T	SNP	SH2D2A	ENST00000392306	human	ensembl	74_37	-1	known	missense	c.703	p.A235T	0.000	NULL	pfam_SH2,smart_SH2,pfscan_SH2	-	no_errors	SH2D2A	HGNC	ENSG00000027869				284	0	0	186	56	23.1405
OR6N1	0	genome.wustl.edu	37	1	158736446	158736446	+	Silent	SNP	T	T	C			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	1	158736446	158736446	T	C	SNP	OR6N1	ENST00000335094	human	ensembl	74_37	-1	known	silent	c.27	p.V9	0.559	NULL	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR6N1	HGNC	ENSG00000197403				59	0	0	42	9	17.6471
UHMK1	0	genome.wustl.edu	37	1	162470799	162470799	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	1	162470799	162470799	A	G	SNP	UHMK1	ENST00000489294	human	ensembl	74_37	+1	known	missense	c.658	p.T220A	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_RRM_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_RRM_dom,pfscan_RRM_dom,pfscan_Prot_kinase_dom	-	no_errors	UHMK1	HGNC	ENSG00000152332				93	0	0	73	4	5.19481
SPEN	0	genome.wustl.edu	37	1	16261327	16261327	+	Silent	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	1	16261327	16261327	G	A	SNP	SPEN	ENST00000375759	human	ensembl	74_37	+1	known	silent	c.8592	p.S2864	0.103	NULL	pfam_RRM_dom,pfam_SPOC_C,superfamily_SPOC_like_C_dom,smart_RRM_dom,pfscan_SPOC_met,pfscan_RRM_dom	-	no_errors	SPEN	HGNC	ENSG00000065526				84	0	0	46	10	17.8571
CLCNKB	0	genome.wustl.edu	37	1	16380242	16380242	+	Silent	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	1	16380242	16380242	C	T	SNP	CLCNKB	ENST00000375679	human	ensembl	74_37	+1	known	silent	c.1731	p.A577	0.015	pfam_CBS_dom,smart_CBS_dom	pfam_Cl-channel_volt-gated,pfam_CBS_dom,superfamily_Cl-channel_core,smart_CBS_dom,prints_Cl-channel_volt-gated,prints_Cl_channel-K	-	no_errors	CLCNKB	HGNC	ENSG00000184908				91	0	0	61	12	16.4384
LRRC52	0	genome.wustl.edu	37	1	165513785	165513785	+	Nonsense_Mutation	SNP	T	T	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	1	165513785	165513785	T	A	SNP	LRRC52	ENST00000294818	human	ensembl	74_37	+1	known	nonsense	c.252	p.C84*	0.084	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC52	HGNC	ENSG00000162763				374	1	0.266667	231	77	25
NECAP2	0	genome.wustl.edu	37	1	16774560	16774560	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	1	16774560	16774560	C	T	SNP	NECAP2	ENST00000443980	human	ensembl	74_37	+1	known	missense	c.304	p.R102W	0.997	pfam_NECAP-1	pfam_NECAP-1	-	no_errors	NECAP2	HGNC	ENSG00000157191				318	0	0	157	54	25.5924
TBX19	0	genome.wustl.edu	37	1	168282167	168282167	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	1	168282167	168282167	C	T	SNP	TBX19	ENST00000367821	human	ensembl	74_37	+1	known	missense	c.1274	p.A425V	1.000	NULL	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box,prints_TF_T-box,prints_TF_Brachyury	-	no_errors	TBX19	HGNC	ENSG00000143178				103	0	0	78	13	14.2857
NME7	0	genome.wustl.edu	37	1	169292503	169292503	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	1	169292503	169292503	G	A	SNP	NME7	ENST00000367811	human	ensembl	74_37	-1	known	missense	c.130	p.R44C	1.000	smart_Uncharacterised_DM10,pirsf_NDK7	pfam_Nucleoside_diP_kinase,superfamily_Nucleoside_diP_kinase,smart_Uncharacterised_DM10,smart_Nucleoside_diP_kinase,pirsf_NDK7,prints_Nucleoside_diP_kinase	-	no_errors	NME7	HGNC	ENSG00000143156				210	1	0.473934	135	19	12.3377
BLZF1	0	genome.wustl.edu	37	1	169347718	169347718	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	1	169347718	169347718	C	T	SNP	BLZF1	ENST00000329281	human	ensembl	74_37	+1	known	missense	c.619	p.R207C	1.000	pfam_Hsk3_like	pfam_Hsk3_like	-	no_errors	BLZF1	HGNC	ENSG00000117475				246	0	0	113	22	16.2963
PRRX1	0	genome.wustl.edu	37	1	170705416	170705416	+	RNA	SNP	A	A	G			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	1	170705416	170705416	A	G	SNP	PRRX1	ENST00000476867	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.003	-	-	-	no_errors	PRRX1	HGNC	ENSG00000116132				25	0	0	20	4	16.6667
PRRC2C	0	genome.wustl.edu	37	1	171511137	171511137	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	1	171511137	171511137	G	A	SNP	PRRC2C	ENST00000392078	human	ensembl	74_37	+1	known	missense	c.4532	p.R1511Q	1.000	NULL	pfam_BAT2_N	-	no_errors	PRRC2C	HGNC	ENSG00000117523				123	0	0	76	21	21.6495
ZNF648	0	genome.wustl.edu	37	1	182026465	182026465	+	Silent	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	1	182026465	182026465	C	T	SNP	ZNF648	ENST00000339948	human	ensembl	74_37	-1	novel	silent	c.681	p.A227	0.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF648	HGNC	ENSG00000179930				42	0	0	16	7	30.4348
TEDDM1	0	genome.wustl.edu	37	1	182369414	182369414	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	1	182369414	182369414	C	A	SNP	TEDDM1	ENST00000367565	human	ensembl	74_37	-1	known	missense	c.207	p.W69C	1.000	NULL	pfam_DUF716_TMEM45	-	no_errors	TEDDM1	HGNC	ENSG00000203730				165	0	0	72	26	26.5306
RGS16	0	genome.wustl.edu	37	1	182569617	182569617	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	1	182569617	182569617	G	A	SNP	RGS16	ENST00000367558	human	ensembl	74_37	-1	known	missense	c.419	p.T140M	0.999	pfam_RGS_dom,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal_superfam,pfscan_Regulat_G_prot_signal_superfam	pfam_RGS_dom,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal_superfam,pfscan_Regulat_G_prot_signal_superfam,prints_RGS_dom	-	no_errors	RGS16	HGNC	ENSG00000143333				125	0	0	85	19	18.2692
COLGALT2	0	genome.wustl.edu	37	1	183933050	183933050	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	1	183933050	183933050	G	A	SNP	COLGALT2	ENST00000361927	human	ensembl	74_37	-1	known	nonsense	c.937	p.Q313*	0.997	NULL	pfam_Glyco_trans_25	-	no_errors	COLGALT2	HGNC	ENSG00000198756				116	0	0	63	10	13.6986
FAM129A	0	genome.wustl.edu	37	1	184764680	184764680	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	1	184764680	184764680	C	T	SNP	FAM129A	ENST00000367511	human	ensembl	74_37	-1	known	missense	c.2218	p.V740I	0.000	NULL	NULL	-	no_errors	FAM129A	HGNC	ENSG00000135842				316	0	0	204	63	23.5955
HMCN1	0	genome.wustl.edu	37	1	185958730	185958730	+	Silent	SNP	C	C	G			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	1	185958730	185958730	C	G	SNP	HMCN1	ENST00000271588	human	ensembl	74_37	+1	known	silent	c.3159	p.A1053	0.998	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_G2_nidogen/fibulin_G2F,pfam_EGF-like_Ca-bd_dom,pfam_Thrombospondin_1_rpt,superfamily_GFP,superfamily_Thrombospondin_1_rpt,superfamily_Growth_fac_rcpt_N_dom,superfamily_Cadherin-like,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Thrombospondin_1_rpt,smart_G2_nidogen/fibulin_G2F,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_G2_nidogen/fibulin_G2F,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like_dom	-	no_errors	HMCN1	HGNC	ENSG00000143341				84	0	0	53	22	29.3333
HMCN1	0	genome.wustl.edu	37	1	185966629	185966629	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	1	185966629	185966629	C	T	SNP	HMCN1	ENST00000271588	human	ensembl	74_37	+1	known	missense	c.3847	p.R1283C	1.000	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_G2_nidogen/fibulin_G2F,pfam_EGF-like_Ca-bd_dom,pfam_Thrombospondin_1_rpt,superfamily_GFP,superfamily_Thrombospondin_1_rpt,superfamily_Growth_fac_rcpt_N_dom,superfamily_Cadherin-like,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Thrombospondin_1_rpt,smart_G2_nidogen/fibulin_G2F,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_G2_nidogen/fibulin_G2F,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like_dom	-	no_errors	HMCN1	HGNC	ENSG00000143341				155	1	0.641026	78	17	17.8947
HMCN1	0	genome.wustl.edu	37	1	186106003	186106003	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	1	186106003	186106003	G	T	SNP	HMCN1	ENST00000271588	human	ensembl	74_37	+1	known	nonsense	c.13516	p.E4506*	1.000	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_G2_nidogen/fibulin_G2F,pfam_EGF-like_Ca-bd_dom,pfam_Thrombospondin_1_rpt,superfamily_GFP,superfamily_Thrombospondin_1_rpt,superfamily_Growth_fac_rcpt_N_dom,superfamily_Cadherin-like,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Thrombospondin_1_rpt,smart_G2_nidogen/fibulin_G2F,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_G2_nidogen/fibulin_G2F,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like_dom	-	no_errors	HMCN1	HGNC	ENSG00000143341				246	0	0	133	37	21.7647
PRG4	0	genome.wustl.edu	37	1	186276379	186276379	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	1	186276379	186276379	A	G	SNP	PRG4	ENST00000445192	human	ensembl	74_37	+1	known	missense	c.1528	p.T510A	0.000	NULL	pfam_Somatomedin_B_dom,pfam_Hemopexin-like_repeat,superfamily_Hemopexin-like_dom,smart_Somatomedin_B_dom,smart_Hemopexin-like_repeat,prints_Somatomedin_B_chordata,pfscan_Somatomedin_B_dom	-	no_errors	PRG4	HGNC	ENSG00000116690				222	0	0	137	41	23.0337
PRG4	0	genome.wustl.edu	37	1	186277099	186277099	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	1	186277099	186277099	G	A	SNP	PRG4	ENST00000445192	human	ensembl	74_37	+1	known	missense	c.2248	p.A750T	0.000	NULL	pfam_Somatomedin_B_dom,pfam_Hemopexin-like_repeat,superfamily_Hemopexin-like_dom,smart_Somatomedin_B_dom,smart_Hemopexin-like_repeat,prints_Somatomedin_B_chordata,pfscan_Somatomedin_B_dom	-	no_errors	PRG4	HGNC	ENSG00000116690				335	0	0	167	57	25.4464
TPR	0	genome.wustl.edu	37	1	186292897	186292897	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	1	186292897	186292897	G	A	SNP	TPR	ENST00000367478	human	ensembl	74_37	-1	known	missense	c.6218	p.S2073L	1.000	NULL	pfam_TPR_MLP1_2,superfamily_Prefoldin,superfamily_tRNA-bd_arm	-	no_errors	TPR	HGNC	ENSG00000047410				230	0	0	147	12	7.54717
CRB1	0	genome.wustl.edu	37	1	197404527	197404527	+	Silent	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	1	197404527	197404527	C	T	SNP	CRB1	ENST00000367400	human	ensembl	74_37	+1	known	silent	c.3534	p.I1178	0.010	smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom	pfam_EG-like_dom,pfam_Laminin_G,pfam_EGF_extracell,pfam_EGF-like_Ca-bd_dom,superfamily_ConA-like_lec_gl_sf,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	CRB1	HGNC	ENSG00000134376				80	0	0	54	12	18.1818
ENSG00000206637	0	genome.wustl.edu	37	1	201947684	201947684	+	RNA	SNP	T	T	C			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	1	201947684	201947684	T	C	SNP	ENSG00000206637	ENST00000383910	human	ensembl	74_37	+1	novel	rna	NULL	NULL	0.988	-	-	-	no_errors	SNORA70	RFAM	ENSG00000206637				108	0	0	74	23	23.7113
PPP1R12B	0	genome.wustl.edu	37	1	202464774	202464774	+	Silent	SNP	A	A	G			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	1	202464774	202464774	A	G	SNP	PPP1R12B	ENST00000336894	human	ensembl	74_37	+1	known	silent	c.2412	p.R804	0.105	pirsf_Pase-1_reg_su_12A/B/C_euk	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pirsf_Pase-1_reg_su_12A/B/C_euk,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	PPP1R12B	HGNC	ENSG00000077157				78	0	0	63	5	7.35294
CYB5R1	0	genome.wustl.edu	37	1	202934510	202934510	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	1	202934510	202934510	T	C	SNP	CYB5R1	ENST00000367249	human	ensembl	74_37	-1	known	missense	c.464	p.Y155C	0.993	pfam_OxRdtase_FAD-bd_dom,superfamily_Riboflavin_synthase-like_b-brl,prints_NADH-Cyt_B5_reductase	pfam_OxRdtase_FAD/NAD-bd,pfam_OxRdtase_FAD-bd_dom,superfamily_Riboflavin_synthase-like_b-brl,prints_NADH-Cyt_B5_reductase,prints_Flavoprot_Pyr_Nucl_cyt_Rdtase,prints_Phe_hydroxylase	-	no_errors	CYB5R1	HGNC	ENSG00000159348				396	1	0.251889	232	64	21.6216
TMEM183A	0	genome.wustl.edu	37	1	202990020	202990020	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	1	202990020	202990020	G	A	SNP	TMEM183A	ENST00000367242	human	ensembl	74_37	+1	known	missense	c.889	p.V297I	1.000	NULL	superfamily_F-box_dom	-	no_errors	TMEM183A	HGNC	ENSG00000163444				216	0	0	123	38	23.6025
PPFIA4	0	genome.wustl.edu	37	1	203033065	203033065	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	1	203033065	203033065	G	A	SNP	PPFIA4	ENST00000414050	human	ensembl	74_37	+1	known	missense	c.2105	p.R702H	1.000	pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	-	no_errors	PPFIA4	HGNC	ENSG00000143847				108	0	0	55	22	28.5714
PLEKHA6	0	genome.wustl.edu	37	1	204234077	204234077	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	1	204234077	204234077	G	A	SNP	PLEKHA6	ENST00000272203	human	ensembl	74_37	-1	known	missense	c.374	p.T125M	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	PLEKHA6	HGNC	ENSG00000143850				298	1	0.334448	195	48	19.7531
CDK18	0	genome.wustl.edu	37	1	205499569	205499569	+	RNA	SNP	G	G	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	1	205499569	205499569	G	T	SNP	CDK18	ENST00000459862	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	CDK18	HGNC	ENSG00000117266				32	0	0	22	9	29.0323
CDK18	0	genome.wustl.edu	37	1	205500575	205500575	+	RNA	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	1	205500575	205500575	C	T	SNP	CDK18	ENST00000459862	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	CDK18	HGNC	ENSG00000117266				56	0	0	20	7	25.9259
MIR205HG	0	genome.wustl.edu	37	1	209603835	209603835	+	RNA	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	1	209603835	209603835	C	T	SNP	MIR205HG	ENST00000429156	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.146	-	-	-	no_errors	MIR205HG	HGNC	ENSG00000230937				163	0	0	110	18	14.0625
LAMB3	0	genome.wustl.edu	37	1	209807865	209807865	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	1	209807865	209807865	C	T	SNP	LAMB3	ENST00000356082	human	ensembl	74_37	-1	known	missense	c.491	p.R164Q	0.999	pfam_Laminin_N,superfamily_Galactose-bd-like,smart_Laminin_N,pfscan_Laminin_N	pfam_EGF_laminin,pfam_Laminin_N,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,pfscan_EGF_laminin,pfscan_Laminin_N	-	no_errors	LAMB3	HGNC	ENSG00000196878				102	0	0	75	14	15.7303
PRKCZ	0	genome.wustl.edu	37	1	2103590	2103590	+	Silent	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	1	2103590	2103590	G	A	SNP	PRKCZ	ENST00000378567	human	ensembl	74_37	+1	known	silent	c.1158	p.A386	0.041	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_PKC_zeta,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_OPR_PB1,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pkinase_C,superfamily_Kinase-like_dom,smart_OPR_PB1,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_PKC_zeta,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_dom,prints_DAG/PE-bd	-	no_errors	PRKCZ	HGNC	ENSG00000067606				76	0	0	40	14	25.9259
HHAT	0	genome.wustl.edu	37	1	210761245	210761245	+	Nonsense_Mutation	SNP	T	T	G			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	1	210761245	210761245	T	G	SNP	HHAT	ENST00000391905	human	ensembl	74_37	+1	known	nonsense	c.1047	p.Y349*	0.932	pfam_MBOAT_fam	pfam_MBOAT_fam	-	no_errors	HHAT	HGNC	ENSG00000054392				121	0	0	74	7	8.64198
KCNH1	0	genome.wustl.edu	37	1	211307209	211307209	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	1	211307209	211307209	C	T	SNP	KCNH1	ENST00000271751	human	ensembl	74_37	-1	known	missense	c.79	p.D27N	1.000	superfamily_PAS,pfscan_PAS,tigrfam_PAS	pfam_Ion_trans_dom,pfam_cNMP-bd_dom,pfam_2pore_dom_K_chnl_dom,pfam_PAS_fold,superfamily_cNMP-bd-like,superfamily_PAS,smart_PAC,smart_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG,prints_K_chnl_volt-dep_EAG/ELK/ERG,prints_K_chnl_volt-dep_ERG,pfscan_cNMP-bd_dom,pfscan_PAS,pfscan_PAS-assoc_C,tigrfam_PAS	-	no_errors	KCNH1	HGNC	ENSG00000143473				201	0	0	123	24	16.3265
PROX1	0	genome.wustl.edu	37	1	214170906	214170906	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	1	214170906	214170906	C	T	SNP	PROX1	ENST00000261454	human	ensembl	74_37	+1	known	missense	c.1028	p.P343L	0.909	pfam_Homeo_prospero_dom	pfam_Homeo_prospero_dom,superfamily_Homeodomain-like	-	no_errors	PROX1	HGNC	ENSG00000117707				138	0	0	70	13	15.6627
CENPF	0	genome.wustl.edu	37	1	214818951	214818951	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	1	214818951	214818951	C	T	SNP	CENPF	ENST00000366955	human	ensembl	74_37	+1	known	missense	c.6038	p.T2013M	0.092	NULL	pfam_Centromere_CenpF_N,pfam_Centromere_CenpF_leu-rich_rpt,pfam_CenpF/LEK1_Rb-prot-bd	-	no_errors	CENPF	HGNC	ENSG00000117724				150	0	0	99	19	16.1017
KCTD3	0	genome.wustl.edu	37	1	215792267	215792267	+	Silent	SNP	C	C	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	1	215792267	215792267	C	A	SNP	KCTD3	ENST00000259154	human	ensembl	74_37	+1	known	silent	c.1602	p.S534	0.736	smart_WD40_repeat	pfam_T1-type_BTB,superfamily_BTB/POZ_fold,superfamily_WD40_repeat_dom,smart_BTB/POZ-like,smart_WD40_repeat,pfscan_BTB/POZ-like	-	no_errors	KCTD3	HGNC	ENSG00000136636				145	0	0	78	28	26.4151
TGFB2	0	genome.wustl.edu	37	1	218607536	218607536	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	1	218607536	218607536	A	G	SNP	TGFB2	ENST00000366929	human	ensembl	74_37	+1	known	missense	c.707	p.H236R	0.688	pirsf_TGF-beta,pfam_TGF-b_N,prints_TGF-beta	pirsf_TGF-beta,pfam_TGF-b_N,pfam_TGF-b_C,smart_TGF-b_C,prints_TGFb2,prints_TGF-beta	-	no_errors	TGFB2	HGNC	ENSG00000092969				152	0	0	94	29	23.5772
EPRS	0	genome.wustl.edu	37	1	220162058	220162058	+	Silent	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	1	220162058	220162058	C	T	SNP	EPRS	ENST00000366923	human	ensembl	74_37	-1	known	silent	c.2649	p.S883	0.007	NULL	pfam_Glu/Gln-tRNA-synth_Ib_cat-dom,pfam_WHEP-TRS,pfam_Glu/Gln-tRNA-synth_Ib_codon-bd,pfam_aa-tRNA-synt_IIb_cons-dom,pfam_Pro-tRNA_ligase_II_C,pfam_Anticodon-bd,superfamily_Ribosomal_L25/Gln-tRNA_synth,superfamily_Anticodon-bd,superfamily_Pro-tRNA_synth_II,superfamily_S15_NS1_RNA-bd,superfamily_Glutathione-S-Trfase_C-like,smart_Pro-tRNA_ligase_II_C,prints_Glu/Gln-tRNA-synth,prints_Pro-tRNA-ligase_IIa,pfscan_aa-tRNA-synth_II,pfscan_WHEP-TRS,tigrfam_Pro-tRNA-ligase_IIa_arc-type,tigrfam_Glu-tRNA-synth_arc/euk	-	no_errors	EPRS	HGNC	ENSG00000136628				229	2	0.865801	137	44	24.3094
TMEM63A	0	genome.wustl.edu	37	1	226040398	226040398	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	1	226040398	226040398	A	G	SNP	TMEM63A	ENST00000366835	human	ensembl	74_37	-1	known	missense	c.1870	p.Y624H	1.000	pfam_DUF221	pfam_DUF221	-	no_errors	TMEM63A	HGNC	ENSG00000196187				65	0	0	45	5	10
ARF1	0	genome.wustl.edu	37	1	228285717	228285717	+	RNA	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	1	228285717	228285717	G	A	SNP	ARF1	ENST00000470558	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	ARF1	HGNC	ENSG00000143761				85	0	0	65	8	10.9589
MRPL55	0	genome.wustl.edu	37	1	228294490	228294490	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	1	228294490	228294490	G	A	SNP	MRPL55	ENST00000366731	human	ensembl	74_37	-1	known	nonsense	c.466	p.R156*	0.317	pfam_Ribosomal_L55_mit	pfam_Ribosomal_L55_mit	-	no_errors	MRPL55	HGNC	ENSG00000162910				190	0	0	113	30	20.979
OBSCN	0	genome.wustl.edu	37	1	228529196	228529196	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	1	228529196	228529196	G	T	SNP	OBSCN	ENST00000422127	human	ensembl	74_37	+1	known	missense	c.17915	p.W5972L	1.000	smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,pfam_DH-domain,pfam_IQ_motif_EF-hand-BS,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_Fibronectin_type3,superfamily_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_IQ_motif_EF-hand-BS,smart_DH-domain,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,pfscan_DH-domain	-	no_errors	OBSCN	HGNC	ENSG00000154358				32	0	0	18	4	18.1818
OBSCN	0	genome.wustl.edu	37	1	228547796	228547796	+	Silent	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	1	228547796	228547796	C	T	SNP	OBSCN	ENST00000366709	human	ensembl	74_37	+1	known	silent	c.10560	p.R3520	0.000	NULL	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,pfam_DH-domain,pfam_Fibronectin_type3,pfam_IQ_motif_EF-hand-BS,superfamily_DH-domain,superfamily_Fibronectin_type3,superfamily_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_IQ_motif_EF-hand-BS,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Fibronectin_type3,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_Ig-like_dom,pfscan_DH-domain	-	no_errors	OBSCN	HGNC	ENSG00000154358				29	0	0	18	4	18.1818
TRIM11	0	genome.wustl.edu	37	1	228582822	228582822	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	1	228582822	228582822	C	T	SNP	TRIM11	ENST00000284551	human	ensembl	74_37	-1	known	missense	c.991	p.V331M	0.903	superfamily_ConA-like_lec_gl_sf,smart_PRY,pfscan_B30.2/SPRY,prints_Butyrophylin	pfam_SPRY_rcpt,pfam_Znf_C3HC4_RING-type,pfam_Znf_B-box,superfamily_ConA-like_lec_gl_sf,smart_Znf_RING,smart_Znf_B-box,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	TRIM11	HGNC	ENSG00000154370				35	0	0	15	7	31.8182
RHOU	0	genome.wustl.edu	37	1	228879181	228879181	+	Silent	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	1	228879181	228879181	C	T	SNP	RHOU	ENST00000366691	human	ensembl	74_37	+1	known	silent	c.471	p.I157	1.000	pfam_Small_GTPase,pfam_MIRO-like,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RHOU	HGNC	ENSG00000116574				230	0	0	121	39	24.375
CAPN9	0	genome.wustl.edu	37	1	230928178	230928178	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	1	230928178	230928178	G	A	SNP	CAPN9	ENST00000271971	human	ensembl	74_37	+1	known	missense	c.1729	p.G577S	0.998	smart_EF_hand_dom	pfam_Peptidase_C2_calpain_cat,pfam_Calpain_domain_III,superfamily_Calpain_domain_III,smart_Peptidase_C2_calpain_cat,smart_Calpain_III,smart_EF_hand_dom,prints_Calpain_cysteine_protease,pfscan_EF_hand_dom,pfscan_Peptidase_C2_calpain_cat	-	no_errors	CAPN9	HGNC	ENSG00000135773				200	0	0	126	28	18.1818
EGLN1	0	genome.wustl.edu	37	1	231503356	231503356	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	1	231503356	231503356	T	C	SNP	EGLN1	ENST00000366641	human	ensembl	74_37	-1	known	missense	c.1175	p.D392G	1.000	NULL	pfam_Znf_MYND,pfam_Oxoglu/Fe-dep_dioxygenase,smart_Pro_4_hyd_alph,pfscan_Znf_MYND	-	no_errors	EGLN1	HGNC	ENSG00000135766				133	0	0	81	17	17.3469
TARBP1	0	genome.wustl.edu	37	1	234541716	234541716	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	1	234541716	234541716	C	A	SNP	TARBP1	ENST00000040877	human	ensembl	74_37	-1	novel	nonsense	c.3922	p.E1308*	0.988	superfamily_ARM-type_fold	pfam_SpoU_MeTrfase,superfamily_ARM-type_fold	-	no_errors	TARBP1	HGNC	ENSG00000059588				166	1	0.598802	92	22	19.2982
HNRNPR	0	genome.wustl.edu	37	1	23640194	23640194	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	1	23640194	23640194	A	G	SNP	HNRNPR	ENST00000374616	human	ensembl	74_37	-1	known	missense	c.1028	p.V343A	1.000	tigrfam_HnRNP_R/Q_splicing_fac	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,tigrfam_HnRNP_R/Q_splicing_fac	-	no_errors	HNRNPR	HGNC	ENSG00000125944				78	0	0	51	13	20.3125
ACTN2	0	genome.wustl.edu	37	1	236907942	236907942	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	1	236907942	236907942	G	T	SNP	ACTN2	ENST00000366578	human	ensembl	74_37	+1	known	missense	c.1272	p.L424F	1.000	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_CH-domain,pfam_EF-hand_Ca_insen,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_EF_hand_dom,pfscan_CH-domain,pfscan_EF_hand_dom	-	no_errors	ACTN2	HGNC	ENSG00000077522				61	0	0	33	9	21.4286
RYR2	0	genome.wustl.edu	37	1	237664023	237664023	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	1	237664023	237664023	G	A	SNP	RYR2	ENST00000360064	human	ensembl	74_37	+1	known	missense	c.2210	p.R737H	0.599	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl_sf,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ConA-like_lec_gl_sf,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_hand_dom,pfscan_MIR_motif	-	no_errors	RYR2	HGNC	ENSG00000198626				473	0	0	288	66	18.6441
OPN3	0	genome.wustl.edu	37	1	241757740	241757740	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	1	241757740	241757740	C	T	SNP	OPN3	ENST00000366554	human	ensembl	74_37	-1	known	missense	c.1199	p.R400H	0.849	NULL	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	-	no_errors	OPN3	HGNC	ENSG00000054277				187	0	0	101	26	20.4724
CHML	0	genome.wustl.edu	37	1	241797190	241797190	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	1	241797190	241797190	C	T	SNP	CHML	ENST00000366553	human	ensembl	74_37	-1	known	missense	c.1879	p.A627T	0.000	pirsf_Rab_geranylTrfase_A_euk	pfam_GDP_dissociation_inhibitor,pirsf_Rab_geranylTrfase_A_euk,prints_Rab_escort,prints_GDP_dissociation_inhibitor	-	no_errors	CHML	HGNC	ENSG00000203668				257	0	0	174	49	21.9731
SDCCAG8	0	genome.wustl.edu	37	1	243433519	243433519	+	Silent	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	1	243433519	243433519	C	T	SNP	SDCCAG8	ENST00000366541	human	ensembl	74_37	+1	known	silent	c.180	p.D60	0.000	NULL	NULL	-	no_errors	SDCCAG8	HGNC	ENSG00000054282				60	0	0	39	15	27.7778
MYOM3	0	genome.wustl.edu	37	1	24416564	24416564	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	1	24416564	24416564	C	T	SNP	MYOM3	ENST00000330966	human	ensembl	74_37	-1	known	missense	c.1480	p.A494T	0.361	NULL	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	MYOM3	HGNC	ENSG00000142661				81	0	0	41	11	21.1538
C1orf101	0	genome.wustl.edu	37	1	244769065	244769065	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	1	244769065	244769065	A	T	SNP	C1orf101	ENST00000366531	human	ensembl	74_37	+1	known	missense	c.1919	p.D640V	0.044	NULL	NULL	-	no_errors	C1orf101	HGNC	ENSG00000179397				119	1	0.833333	93	13	12.2642
AHCTF1	0	genome.wustl.edu	37	1	247048893	247048893	+	Silent	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	1	247048893	247048893	G	A	SNP	AHCTF1	ENST00000326225	human	ensembl	74_37	-1	known	silent	c.2589	p.G863	0.957	NULL	superfamily_Quinonprotein_ADH-like_supfam	-	no_errors	AHCTF1	HGNC	ENSG00000153207				51	0	0	21	7	25
OR2AK2	0	genome.wustl.edu	37	1	248129152	248129152	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	1	248129152	248129152	A	G	SNP	OR2AK2	ENST00000366480	human	ensembl	74_37	+1	known	missense	c.519	p.I173M	0.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2AK2	HGNC	ENSG00000187080				319	0	0	220	19	7.94979
OR2T6	0	genome.wustl.edu	37	1	248551324	248551324	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	1	248551324	248551324	C	T	SNP	OR2T6	ENST00000355728	human	ensembl	74_37	+1	known	missense	c.415	p.R139W	0.000	pfam_GPCR_Rhodpsn,prints_Olfact_rcpt,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	OR2T6	HGNC	ENSG00000198104				136	0	0	78	20	20.4082
EPB41	0	genome.wustl.edu	37	1	29342251	29342251	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	1	29342251	29342251	C	T	SNP	EPB41	ENST00000343067	human	ensembl	74_37	+1	known	missense	c.877	p.P293S	1.000	pirsf_Band_41_protein,pfam_FERM_central,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain	pirsf_Band_41_protein,pfam_Band_4.1_C,pfam_SAB_dom,pfam_FERM_PH-like_C,pfam_FERM_N,pfam_FERM_central,pfam_FERM-adjacent,superfamily_FERM_central,smart_Band_41_domain,prints_Band_41_fam,prints_Ez/rad/moesin_like,pfscan_FERM_domain	-	no_errors	EPB41	HGNC	ENSG00000159023				102	0	0	37	11	22.9167
ACTRT2	0	genome.wustl.edu	37	1	2938800	2938800	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	1	2938800	2938800	G	A	SNP	ACTRT2	ENST00000378404	human	ensembl	74_37	+1	known	missense	c.550	p.V184M	1.000	pfam_Actin-related,smart_Actin-related	pfam_Actin-related,smart_Actin-related,prints_Actin-related	-	no_errors	ACTRT2	HGNC	ENSG00000169717				106	0	0	70	19	21.3483
PEF1	0	genome.wustl.edu	37	1	32096261	32096261	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	1	32096261	32096261	G	A	SNP	PEF1	ENST00000373703	human	ensembl	74_37	-1	known	missense	c.808	p.L270F	1.000	NULL	pfam_EF_hand_dom,smart_EF_hand_dom,pfscan_EF_hand_dom	-	no_errors	PEF1	HGNC	ENSG00000162517				52	0	0	36	8	18.1818
BAI2	0	genome.wustl.edu	37	1	32205538	32205538	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	1	32205538	32205538	G	A	SNP	BAI2	ENST00000373658	human	ensembl	74_37	-1	known	missense	c.2156	p.T719I	1.000	pfam_DUF3497	pfam_GPCR_2_secretin-like,pfam_DUF3497,pfam_Thrombospondin_1_rpt,pfam_GPS_dom,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_GPS_dom,pfscan_Thrombospondin_1_rpt,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GPCR_2_brain-spec_angio_inhib,prints_GPCR_2_secretin-like	-	no_errors	BAI2	HGNC	ENSG00000121753				62	0	0	41	9	18
PRDM16	0	genome.wustl.edu	37	1	3319548	3319548	+	Silent	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	1	3319548	3319548	C	T	SNP	PRDM16	ENST00000270722	human	ensembl	74_37	+1	known	silent	c.870	p.F290	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Znf_BED_prd,smart_SET_dom,smart_Znf_C2H2-like,pfscan_SET_dom,pfscan_Znf_C2H2	-	no_errors	PRDM16	HGNC	ENSG00000142611				94	0	0	56	14	20
YARS	0	genome.wustl.edu	37	1	33245896	33245896	+	RNA	SNP	T	T	C			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	1	33245896	33245896	T	C	SNP	YARS	ENST00000490826	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	YARS	HGNC	ENSG00000134684				104	0	0	71	21	22.8261
MEAF6	0	genome.wustl.edu	37	1	37961520	37961520	+	Splice_Site	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	1	37961520	37961520	C	T	SNP	MEAF6	ENST00000373075	human	ensembl	74_37	-1	known	splice_site	c.564-1	e7-1	1.000	-	-	-	no_errors	MEAF6	HGNC	ENSG00000163875				159	0	0	95	26	21.4876
GNL2	0	genome.wustl.edu	37	1	38059433	38059433	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	1	38059433	38059433	C	T	SNP	GNL2	ENST00000373062	human	ensembl	74_37	-1	known	missense	c.79	p.A27T	1.000	NULL	pfam_NOG2_N_dom,pfam_GTP_binding_domain,superfamily_P-loop_NTPase,prints_GTP_binding_domain	-	no_errors	GNL2	HGNC	ENSG00000134697				169	0	0	100	21	17.3554
UTP11L	0	genome.wustl.edu	37	1	38484942	38484942	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	1	38484942	38484942	G	A	SNP	UTP11L	ENST00000373014	human	ensembl	74_37	+1	known	missense	c.454	p.A152T	1.000	pfam_SSU_processome_Utp11,pirsf_SSU_processome_Utp11	pfam_SSU_processome_Utp11,pirsf_SSU_processome_Utp11	-	no_errors	UTP11L	HGNC	ENSG00000183520				253	0	0	162	43	20.9756
UTP11L	0	genome.wustl.edu	37	1	38489303	38489303	+	RNA	SNP	T	T	C			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	1	38489303	38489303	T	C	SNP	UTP11L	ENST00000488453	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	UTP11L	HGNC	ENSG00000183520				79	0	0	52	14	21.2121
SMAP2	0	genome.wustl.edu	37	1	40872413	40872413	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	1	40872413	40872413	C	T	SNP	SMAP2	ENST00000372718	human	ensembl	74_37	+1	known	nonsense	c.109	p.R37*	0.997	pfam_ArfGAP,smart_ArfGAP,pfscan_ArfGAP,prints_ArfGAP	pfam_ArfGAP,smart_ArfGAP,pfscan_ArfGAP,prints_ArfGAP	-	no_errors	SMAP2	HGNC	ENSG00000084070				135	0	0	80	26	24.5283
FOXJ3	0	genome.wustl.edu	37	1	42693608	42693608	+	Silent	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	1	42693608	42693608	C	T	SNP	FOXJ3	ENST00000361346	human	ensembl	74_37	-1	known	silent	c.474	p.P158	1.000	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXJ3	HGNC	ENSG00000198815				104	0	0	47	15	24.1935
SLC2A1	0	genome.wustl.edu	37	1	43396302	43396302	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	1	43396302	43396302	C	T	SNP	SLC2A1	ENST00000426263	human	ensembl	74_37	-1	known	missense	c.511	p.A171T	0.999	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Sugar/inositol_transpt	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,prints_Sugar/inositol_transpt,prints_Glu_transpt_1,tigrfam_Sugar/inositol_transpt	-	no_errors	SLC2A1	HGNC	ENSG00000117394				32	0	0	15	5	25
TIE1	0	genome.wustl.edu	37	1	43779013	43779013	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	1	43779013	43779013	C	T	SNP	TIE1	ENST00000372476	human	ensembl	74_37	+1	known	missense	c.2135	p.T712M	0.998	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,smart_Ig_sub,smart_EG-like_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_EG-like_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	TIE1	HGNC	ENSG00000066056				221	0	0	133	25	15.8228
SLC6A9	0	genome.wustl.edu	37	1	44476464	44476464	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	1	44476464	44476464	C	T	SNP	SLC6A9	ENST00000360584	human	ensembl	74_37	-1	known	missense	c.340	p.V114M	1.000	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport,prints_Na/ntran_symport_glycine_GLY1	-	no_errors	SLC6A9	HGNC	ENSG00000196517				99	0	0	66	19	22.3529
EIF2B3	0	genome.wustl.edu	37	1	45407285	45407285	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	1	45407285	45407285	T	G	SNP	EIF2B3	ENST00000360403	human	ensembl	74_37	-1	known	missense	c.347	p.E116A	1.000	pfam_NTP_transferase	pfam_NTP_transferase	-	no_errors	EIF2B3	HGNC	ENSG00000070785				275	0	0	165	42	20.2899
EIF2B3	0	genome.wustl.edu	37	1	45424531	45424531	+	RNA	SNP	T	T	C			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	1	45424531	45424531	T	C	SNP	EIF2B3	ENST00000487532	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	EIF2B3	HGNC	ENSG00000070785				57	0	0	30	9	23.0769
HECTD3	0	genome.wustl.edu	37	1	45473964	45473964	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	1	45473964	45473964	T	C	SNP	HECTD3	ENST00000372172	human	ensembl	74_37	-1	known	missense	c.1268	p.H423R	1.000	NULL	pfam_HECT,pfam_APC_su10/DOC_dom,superfamily_HECT,superfamily_Galactose-bd-like,smart_HECT,pfscan_HECT	-	no_errors	HECTD3	HGNC	ENSG00000126107				92	0	0	69	8	10.3896
CYP4B1	0	genome.wustl.edu	37	1	47283696	47283696	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	1	47283696	47283696	C	T	SNP	CYP4B1	ENST00000371923	human	ensembl	74_37	+1	known	missense	c.1267	p.P423S	0.992	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450,prints_Cyt_P450_E_grp-II	-	no_errors	CYP4B1	HGNC	ENSG00000142973				244	0	0	140	49	25.9259
PODN	0	genome.wustl.edu	37	1	53547667	53547667	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	1	53547667	53547667	C	T	SNP	PODN	ENST00000312553	human	ensembl	74_37	+1	known	missense	c.1820	p.A607V	1.000	NULL	pfam_Leu-rich_rpt,smart_LRR-contain_N,smart_Leu-rich_rpt_RNase_inh_sub-typ,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	PODN	HGNC	ENSG00000174348				143	0	0	74	18	19.5652
SLC1A7	0	genome.wustl.edu	37	1	53580635	53580635	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	1	53580635	53580635	C	T	SNP	SLC1A7	ENST00000371494	human	ensembl	74_37	-1	known	missense	c.226	p.G76R	1.000	pfam_Na-dicarboxylate_symporter,prints_Na-dicarboxylate_symporter	pfam_Na-dicarboxylate_symporter,prints_Na-dicarboxylate_symporter	-	no_errors	SLC1A7	HGNC	ENSG00000162383				53	0	0	32	7	17.9487
LRP8	0	genome.wustl.edu	37	1	53727864	53727864	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	1	53727864	53727864	C	T	SNP	LRP8	ENST00000306052	human	ensembl	74_37	-1	known	missense	c.1790	p.R597H	1.000	pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt_N_dom,smart_LDLR_classB_rpt,pfscan_LDLR_classB_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,pfam_EGF-like_Ca-bd_dom,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_LDLR_classB_rpt,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP8	HGNC	ENSG00000157193				172	0	0	95	19	16.6667
TMEM61	0	genome.wustl.edu	37	1	55457572	55457572	+	Silent	SNP	G	G	C			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	1	55457572	55457572	G	C	SNP	TMEM61	ENST00000371268	human	ensembl	74_37	+1	known	silent	c.429	p.G143	0.000	NULL	NULL	-	no_errors	TMEM61	HGNC	ENSG00000143001				205	1	0.485437	118	33	21.8543
BSND	0	genome.wustl.edu	37	1	55472853	55472853	+	Silent	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	1	55472853	55472853	C	T	SNP	BSND	ENST00000371265	human	ensembl	74_37	+1	known	silent	c.456	p.G152	0.000	NULL	NULL	-	no_errors	BSND	HGNC	ENSG00000162399				152	0	0	82	13	13.6842
USP24	0	genome.wustl.edu	37	1	55622979	55622979	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	1	55622979	55622979	C	A	SNP	USP24	ENST00000407756	human	ensembl	74_37	-1	known	missense	c.956	p.R319I	1.000	NULL	pfam_Peptidase_C19/C67,superfamily_UBA-like,superfamily_ARM-type_fold,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Peptidase_C19/C67	-	no_errors	USP24	HGNC	ENSG00000162402				51	0	0	31	2	6.06061
NPHP4	0	genome.wustl.edu	37	1	5923298	5923298	+	RNA	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	1	5923298	5923298	C	T	SNP	NPHP4	ENST00000478423	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	NPHP4	HGNC	ENSG00000131697				92	0	0	79	11	12.2222
NPHP4	0	genome.wustl.edu	37	1	5933359	5933359	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	1	5933359	5933359	C	T	SNP	NPHP4	ENST00000378156	human	ensembl	74_37	-1	known	missense	c.3268	p.A1090T	0.000	NULL	NULL	-	no_errors	NPHP4	HGNC	ENSG00000131697				74	0	0	46	13	22.0339
PGM1	0	genome.wustl.edu	37	1	64059334	64059334	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	1	64059334	64059334	G	A	SNP	PGM1	ENST00000371084	human	ensembl	74_37	+1	known	missense	c.175	p.V59M	1.000	pfam_A-D-PHexomutase_a/b/a-I,superfamily_A-D-PHexomutase_a/b/a-I/II/III	pfam_A-D-PHexomutase_a/b/a-I,pfam_A-D-PHexomutase_a/b/a-III,pfam_A-D-PHexomutase_a/b/a-II,pfam_A-D-PHexomutase_C,superfamily_A-D-PHexomutase_a/b/a-I/II/III,prints_Alpha-D-phosphohexomutase_SF	-	no_errors	PGM1	HGNC	ENSG00000079739				19	0	0	10	4	28.5714
SGIP1	0	genome.wustl.edu	37	1	67147821	67147821	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	1	67147821	67147821	G	T	SNP	SGIP1	ENST00000237247	human	ensembl	74_37	+1	known	missense	c.1096	p.G366W	0.245	NULL	pfam_Muniscin_C-term_mu_dom,pfam_Clathrin_mu_C,superfamily_Clathrin_mu_C	-	no_errors	SGIP1	HGNC	ENSG00000118473				504	1	0.19802	290	87	23.0769
LRRC7	0	genome.wustl.edu	37	1	70504040	70504040	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	1	70504040	70504040	C	T	SNP	LRRC7	ENST00000035383	human	ensembl	74_37	+1	known	missense	c.2419	p.R807C	1.000	NULL	pfam_Leu-rich_rpt,pfam_PDZ,superfamily_PDZ,smart_Leu-rich_rpt_typical-subtyp,smart_PDZ,pfscan_PDZ	-	no_errors	LRRC7	HGNC	ENSG00000033122				144	0	0	90	5	5.26316
USP33	0	genome.wustl.edu	37	1	78187594	78187594	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	1	78187594	78187594	C	T	SNP	USP33	ENST00000357428	human	ensembl	74_37	-1	known	missense	c.1672	p.V558I	1.000	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	pfam_Peptidase_C19/C67,pfam_Pept_C19_DUSP,pfam_Znf_UBP,smart_Znf_UBP,smart_Pept_C19_DUSP,pfscan_Znf_UBP,pfscan_Peptidase_C19/C67	-	no_errors	USP33	HGNC	ENSG00000077254				98	0	0	47	13	21.6667
LPAR3	0	genome.wustl.edu	37	1	85279838	85279838	+	Silent	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	1	85279838	85279838	G	A	SNP	LPAR3	ENST00000370611	human	ensembl	74_37	-1	known	silent	c.753	p.C251	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_LPA_rcpt_EDG7,prints_GPCR_Rhodpsn,prints_LPA_rcpt,prints_LPA_rcpt_EDG2,prints_Melcrt_ACTH_rcpt	-	no_errors	LPAR3	HGNC	ENSG00000171517				123	1	0.806452	88	20	18.5185
GBP5	0	genome.wustl.edu	37	1	89733134	89733134	+	Splice_Site	SNP	T	T	C			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	1	89733134	89733134	T	C	SNP	GBP5	ENST00000490568	human	ensembl	74_37	-1	known	splice_site	c.NULL	NULL	0.985	-	-	-	no_errors	GBP5	HGNC	ENSG00000154451				120	0	0	64	18	21.9512
LRRC8C	0	genome.wustl.edu	37	1	90178423	90178423	+	Silent	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	1	90178423	90178423	C	T	SNP	LRRC8C	ENST00000370454	human	ensembl	74_37	+1	known	silent	c.294	p.G98	0.239	NULL	pfam_LRR_protein-8_N,pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC8C	HGNC	ENSG00000171488				204	0	0	114	23	16.7883
DNTTIP2	0	genome.wustl.edu	37	1	94343392	94343392	+	Silent	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	1	94343392	94343392	C	T	SNP	DNTTIP2	ENST00000436063	human	ensembl	74_37	-1	known	silent	c.99	p.A33	0.004	NULL	pfam_Fcf2	-	no_errors	DNTTIP2	HGNC	ENSG00000067334				55	0	0	32	7	17.9487
CLSTN1	0	genome.wustl.edu	37	1	9795564	9795564	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	1	9795564	9795564	G	A	SNP	CLSTN1	ENST00000377298	human	ensembl	74_37	-1	known	missense	c.1844	p.T615M	1.000	NULL	pfam_Cadherin,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	CLSTN1	HGNC	ENSG00000171603				215	0	0	132	31	19.0184
DPYD	0	genome.wustl.edu	37	1	98058829	98058829	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	1	98058829	98058829	C	T	SNP	DPYD	ENST00000370192	human	ensembl	74_37	-1	known	missense	c.1073	p.R358H	1.000	pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD	pfam_Dihydroorotate_DH_1_2,pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,pfam_tRNA_hU_synthase,superfamily_Helical_ferredxn,prints_FAD_pyr_nucl-diS_OxRdtase,tigrfam_Dihydroorotate_DH	-	no_errors	DPYD	HGNC	ENSG00000188641				193	0	0	141	30	17.5439
CLSTN1	0	genome.wustl.edu	37	1	9833363	9833363	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	1	9833363	9833363	C	T	SNP	CLSTN1	ENST00000377298	human	ensembl	74_37	-1	known	missense	c.181	p.A61T	1.000	superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	pfam_Cadherin,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	CLSTN1	HGNC	ENSG00000171603				71	0	0	45	12	21.0526
NKX2-3	0	genome.wustl.edu	37	10	101294790	101294790	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	10	101294790	101294790	C	T	SNP	NKX2-3	ENST00000344586	human	ensembl	74_37	+1	known	missense	c.407	p.A136V	0.726	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa	-	no_errors	NKX2-3	HGNC	ENSG00000119919				20	0	0	8	6	42.8571
COX15	0	genome.wustl.edu	37	10	101486818	101486818	+	Silent	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	10	101486818	101486818	G	A	SNP	COX15	ENST00000016171	human	ensembl	74_37	-1	known	silent	c.489	p.Y163	1.000	pfam_HemeA_syn	pfam_HemeA_syn,superfamily_Trypsin-like_Pept_dom	-	no_errors	COX15	HGNC	ENSG00000014919				121	1	0.819672	93	6	6.06061
CUTC	0	genome.wustl.edu	37	10	101514332	101514332	+	Silent	SNP	A	A	G			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	10	101514332	101514332	A	G	SNP	CUTC	ENST00000370476	human	ensembl	74_37	+1	known	silent	c.648	p.S216	0.150	pfam_Cu_homeostasis_CutC,superfamily_Cu_homeostasis_CutC_dom	pfam_Cu_homeostasis_CutC,superfamily_Cu_homeostasis_CutC_dom	-	no_errors	CUTC	HGNC	ENSG00000119929				524	1	0.190476	293	154	34.4519
ABCC2	0	genome.wustl.edu	37	10	101590172	101590172	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	10	101590172	101590172	G	A	SNP	ABCC2	ENST00000370449	human	ensembl	74_37	+1	known	missense	c.2729	p.R910H	0.459	tigrfam_Multidrug-R_assoc	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC1_TM_dom,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom,tigrfam_Multidrug-R_assoc	-	no_errors	ABCC2	HGNC	ENSG00000023839				201	1	0.49505	151	15	9.03614
ABCC2	0	genome.wustl.edu	37	10	101590491	101590491	+	Silent	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	10	101590491	101590491	G	A	SNP	ABCC2	ENST00000370449	human	ensembl	74_37	+1	known	silent	c.2766	p.R922	0.006	tigrfam_Multidrug-R_assoc	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC1_TM_dom,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom,tigrfam_Multidrug-R_assoc	-	no_errors	ABCC2	HGNC	ENSG00000023839				147	0	0	119	7	5.55556
CPN1	0	genome.wustl.edu	37	10	101835823	101835823	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	10	101835823	101835823	C	T	SNP	CPN1	ENST00000370418	human	ensembl	74_37	-1	known	missense	c.265	p.E89K	1.000	pfam_Peptidase_M14,smart_Peptidase_M14,prints_Peptidase_M14	pfam_Peptidase_M14,pfam_DUF2817,superfamily_CarboxyPept-like_regulatory,smart_Peptidase_M14,prints_Peptidase_M14	-	no_errors	CPN1	HGNC	ENSG00000120054				134	0	0	80	33	29.2035
MGEA5	0	genome.wustl.edu	37	10	103550863	103550863	+	RNA	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	10	103550863	103550863	G	A	SNP	MGEA5	ENST00000461645	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	MGEA5	HGNC	ENSG00000198408				76	0	0	68	25	26.8817
C10orf76	0	genome.wustl.edu	37	10	103799868	103799868	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	10	103799868	103799868	C	T	SNP	C10orf76	ENST00000370033	human	ensembl	74_37	-1	known	missense	c.4	p.A2T	1.000	NULL	pfam_DUF1741,superfamily_ARM-type_fold	-	no_errors	C10orf76	HGNC	ENSG00000120029				191	0	0	111	47	29.7468
AS3MT	0	genome.wustl.edu	37	10	104632870	104632870	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	10	104632870	104632870	A	C	SNP	AS3MT	ENST00000369880	human	ensembl	74_37	+1	known	missense	c.338	p.K113T	0.999	pfam_Methyltransf_11,pfam_UbiE/COQ5_MeTrFase,pfam_Methyltransf_12,pfam_PCMT,pfam_Methyltransferase-rel	pfam_Methyltransf_11,pfam_UbiE/COQ5_MeTrFase,pfam_Methyltransf_12,pfam_PCMT,pfam_Methyltransferase-rel	-	no_errors	AS3MT	HGNC	ENSG00000214435				171	0	0	99	41	29.2857
SH3PXD2A	0	genome.wustl.edu	37	10	105361647	105361647	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	10	105361647	105361647	A	G	SNP	SH3PXD2A	ENST00000369774	human	ensembl	74_37	-1	known	missense	c.3328	p.Y1110H	1.000	superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	pfam_SH3_domain,pfam_SH3_2,pfam_Phox,superfamily_Phox,superfamily_SH3_domain,smart_Phox,smart_SH3_domain,pfscan_Phox,pfscan_SH3_domain	-	no_errors	SH3PXD2A	HGNC	ENSG00000107957				226	0	0	170	45	20.9302
SORCS1	0	genome.wustl.edu	37	10	108923733	108923733	+	Silent	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	10	108923733	108923733	G	A	SNP	SORCS1	ENST00000344440	human	ensembl	74_37	-1	known	silent	c.552	p.N184	1.000	NULL	pfam_PKD_dom,superfamily_PKD_dom,smart_VPS10,pfscan_PKD_dom	-	no_errors	SORCS1	HGNC	ENSG00000108018				100	0	0	81	23	22.1154
CELF2	0	genome.wustl.edu	37	10	11317065	11317065	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	10	11317065	11317065	G	A	SNP	CELF2	ENST00000450189	human	ensembl	74_37	+1	known	missense	c.823	p.G275S	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,prints_Hud_Sxl_RNA	-	no_errors	CELF2	HGNC	ENSG00000048740				309	0	0	228	40	14.9254
USP6NL	0	genome.wustl.edu	37	10	11505504	11505504	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	10	11505504	11505504	C	T	SNP	USP6NL	ENST00000379237	human	ensembl	74_37	-1	known	missense	c.1492	p.A498T	1.000	NULL	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	USP6NL	HGNC	ENSG00000148429				302	0	0	228	45	16.4835
NRAP	0	genome.wustl.edu	37	10	115377303	115377303	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	10	115377303	115377303	G	T	SNP	NRAP	ENST00000369358	human	ensembl	74_37	-1	known	missense	c.2908	p.R970S	1.000	smart_Nebulin_35r-motif	pfam_Nebulin_35r-motif,pfam_Znf_LIM,smart_Znf_LIM,smart_Nebulin_35r-motif,pfscan_Znf_LIM,pfscan_Nebulin_35r-motif,prints_Nebulin	-	no_errors	NRAP	HGNC	ENSG00000197893				209	0	0	166	17	9.28962
NRAP	0	genome.wustl.edu	37	10	115383322	115383322	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	10	115383322	115383322	A	G	SNP	NRAP	ENST00000369358	human	ensembl	74_37	-1	known	missense	c.2447	p.L816P	1.000	pfam_Nebulin_35r-motif,smart_Nebulin_35r-motif,pfscan_Nebulin_35r-motif	pfam_Nebulin_35r-motif,pfam_Znf_LIM,smart_Znf_LIM,smart_Nebulin_35r-motif,pfscan_Znf_LIM,pfscan_Nebulin_35r-motif,prints_Nebulin	-	no_errors	NRAP	HGNC	ENSG00000197893				155	0	0	125	44	26.0355
VWA2	0	genome.wustl.edu	37	10	116037686	116037686	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	10	116037686	116037686	C	T	SNP	VWA2	ENST00000392982	human	ensembl	74_37	+1	known	missense	c.580	p.H194Y	0.996	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_VWF_A,pfam_EG-like_dom,pfam_EGF_extracell,smart_VWF_A,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom,pfscan_VWF_A	-	no_errors	VWA2	HGNC	ENSG00000165816				35	0	0	24	12	33.3333
FAM160B1	0	genome.wustl.edu	37	10	116593171	116593171	+	Nonstop_Mutation	SNP	T	T	G			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	10	116593171	116593171	T	G	SNP	FAM160B1	ENST00000369246	human	ensembl	74_37	+1	known	nonstop	c.304	p.*102G	0.002	NULL	pfam_RetinoicA-induced_16-like	-	no_errors	FAM160B1	HGNC	ENSG00000151553				287	0	0	179	102	36.2989
PROSER2	0	genome.wustl.edu	37	10	11894126	11894126	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	10	11894126	11894126	C	T	SNP	PROSER2	ENST00000277570	human	ensembl	74_37	+1	known	missense	c.50	p.T17M	0.001	NULL	NULL	-	no_errors	PROSER2	HGNC	ENSG00000148426				86	0	0	47	12	20.339
PLEKHA1	0	genome.wustl.edu	37	10	124186520	124186520	+	Silent	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	10	124186520	124186520	G	A	SNP	PLEKHA1	ENST00000368990	human	ensembl	74_37	+1	known	silent	c.873	p.Q291	1.000	smart_Pleckstrin_homology	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	PLEKHA1	HGNC	ENSG00000107679				99	0	0	61	22	26.506
PLEKHA1	0	genome.wustl.edu	37	10	124189240	124189240	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	10	124189240	124189240	T	C	SNP	PLEKHA1	ENST00000368990	human	ensembl	74_37	+1	known	missense	c.1001	p.V334A	1.000	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	PLEKHA1	HGNC	ENSG00000107679				115	0	0	85	20	19.0476
HTRA1	0	genome.wustl.edu	37	10	124249045	124249045	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	10	124249045	124249045	G	A	SNP	HTRA1	ENST00000368984	human	ensembl	74_37	+1	known	missense	c.680	p.R227Q	1.000	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom	pfam_Peptidase_S1,pfam_PDZ,pfam_Kazal_dom,pfam_IGFBP-like,superfamily_Trypsin-like_Pept_dom,superfamily_PDZ,smart_IGFBP-like,smart_Kazal_dom,smart_PDZ,pfscan_PDZ,prints_Peptidase_S1C	-	no_errors	HTRA1	HGNC	ENSG00000166033				134	0	0	93	17	15.4545
CUZD1	0	genome.wustl.edu	37	10	124596473	124596473	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	10	124596473	124596473	G	A	SNP	CUZD1	ENST00000368904	human	ensembl	74_37	-1	known	missense	c.691	p.R231C	0.481	pfam_CUB_dom,superfamily_CUB_dom,smart_CUB_dom,pfscan_CUB_dom	pfam_ZP_dom,pfam_CUB_dom,superfamily_CUB_dom,smart_CUB_dom,smart_ZP_dom,pfscan_CUB_dom,pfscan_ZP_dom,prints_ZP_dom	-	no_errors	CUZD1	HGNC	ENSG00000138161				150	1	0.662252	116	19	14.0741
STK32C	0	genome.wustl.edu	37	10	134041580	134041580	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	10	134041580	134041580	A	G	SNP	STK32C	ENST00000368625	human	ensembl	74_37	-1	known	missense	c.410	p.M137T	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	STK32C	HGNC	ENSG00000165752				124	0	0	66	24	26.6667
CUBN	0	genome.wustl.edu	37	10	16979614	16979614	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	10	16979614	16979614	C	T	SNP	CUBN	ENST00000377833	human	ensembl	74_37	-1	known	missense	c.5903	p.G1968D	0.035	NULL	pfam_CUB_dom,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,superfamily_CUB_dom,superfamily_Growth_fac_rcpt_N_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_CUB_dom,pfscan_CUB_dom,pfscan_EG-like_dom	-	no_errors	CUBN	HGNC	ENSG00000107611				74	0	0	25	10	28.5714
PTPLA	0	genome.wustl.edu	37	10	17636319	17636319	+	Silent	SNP	A	A	G			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	10	17636319	17636319	A	G	SNP	PTPLA	ENST00000361271	human	ensembl	74_37	-1	known	silent	c.669	p.A223	0.991	pfam_Tyr_Pase-like_PTPLA	pfam_Tyr_Pase-like_PTPLA	-	no_errors	PTPLA	HGNC	ENSG00000165996				72	0	0	55	12	17.9104
NEBL	0	genome.wustl.edu	37	10	21147169	21147169	+	Silent	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	10	21147169	21147169	G	A	SNP	NEBL	ENST00000377122	human	ensembl	74_37	-1	known	silent	c.903	p.G301	0.963	smart_Nebulin_35r-motif	pfam_Nebulin_35r-motif,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_Nebulin_35r-motif,smart_SH3_domain,pfscan_Nebulin_35r-motif,pfscan_SH3_domain,prints_SH3_domain	-	no_errors	NEBL	HGNC	ENSG00000078114				55	0	0	42	24	36.3636
MYO3A	0	genome.wustl.edu	37	10	26359255	26359255	+	Silent	SNP	T	T	C			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	10	26359255	26359255	T	C	SNP	MYO3A	ENST00000265944	human	ensembl	74_37	+1	known	silent	c.1284	p.V428	0.997	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom,prints_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,pfscan_Prot_kinase_dom,prints_Myosin_head_motor_dom	-	no_errors	MYO3A	HGNC	ENSG00000095777				146	0	0	80	16	16.6667
SVIL	0	genome.wustl.edu	37	10	29821497	29821497	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	10	29821497	29821497	G	A	SNP	SVIL	ENST00000355867	human	ensembl	74_37	-1	known	missense	c.1799	p.A600V	0.000	NULL	pfam_Gelsolin_dom,pfam_Villin_headpiece,superfamily_Villin_headpiece,smart_Villin/Gelsolin,smart_Villin_headpiece,pfscan_Villin_headpiece,prints_Villin/Gelsolin	-	no_errors	SVIL	HGNC	ENSG00000197321				87	0	0	53	11	17.1875
ZNF438	0	genome.wustl.edu	37	10	31134090	31134090	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	10	31134090	31134090	G	T	SNP	ZNF438	ENST00000361310	human	ensembl	74_37	-1	known	missense	c.2287	p.P763T	0.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF438	HGNC	ENSG00000183621				318	0	0	208	106	33.758
ZNF438	0	genome.wustl.edu	37	10	31139183	31139183	+	Silent	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	10	31139183	31139183	G	A	SNP	ZNF438	ENST00000361310	human	ensembl	74_37	-1	known	silent	c.151	p.L51	0.987	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF438	HGNC	ENSG00000183621				265	0	0	193	31	13.8393
RASGEF1A	0	genome.wustl.edu	37	10	43696165	43696165	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	10	43696165	43696165	C	T	SNP	RASGEF1A	ENST00000395809	human	ensembl	74_37	-1	known	missense	c.631	p.V211M	1.000	superfamily_Ras_GEF_dom,smart_RasGRF_CDC25	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,superfamily_Ras_GEF_dom,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RASGEF1A	HGNC	ENSG00000198915				101	0	0	59	15	20.2703
RASSF4	0	genome.wustl.edu	37	10	45487447	45487447	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	10	45487447	45487447	T	C	SNP	RASSF4	ENST00000334940	human	ensembl	74_37	+1	known	missense	c.929	p.M310T	0.984	pfscan_SARAH_dom	pfam_Ras-assoc,smart_Ras-assoc,pfscan_Ras-assoc,pfscan_SARAH_dom	-	no_errors	RASSF4	HGNC	ENSG00000107551				63	0	0	35	16	31.3725
SLC18A3	0	genome.wustl.edu	37	10	50820184	50820184	+	Silent	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	10	50820184	50820184	G	A	SNP	SLC18A3	ENST00000374115	human	ensembl	74_37	+1	known	silent	c.1398	p.L466	0.953	superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC18A3	HGNC	ENSG00000187714				76	0	0	59	16	21.3333
CHAT	0	genome.wustl.edu	37	10	50863204	50863204	+	Silent	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	10	50863204	50863204	C	T	SNP	CHAT	ENST00000337653	human	ensembl	74_37	+1	known	silent	c.1698	p.R566	0.547	pfam_Carn_acyl_trans	pfam_Carn_acyl_trans	-	no_errors	CHAT	HGNC	ENSG00000070748				156	0	0	111	22	16.5414
PRKG1	0	genome.wustl.edu	37	10	52913011	52913011	+	Silent	SNP	T	T	C			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	10	52913011	52913011	T	C	SNP	PRKG1	ENST00000373980	human	ensembl	74_37	+1	known	silent	c.399	p.C133	1.000	pirsf_cGMP-dependent_protein_kinase,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom	pirsf_cGMP-dependent_protein_kinase,pfam_Prot_kinase_dom,pfam_cNMP-bd_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,prints_cGMP_dep_kinase,prints_cAMP/cGMP_kin,pfscan_cNMP-bd_dom,pfscan_Prot_kinase_dom	-	no_errors	PRKG1	HGNC	ENSG00000185532				140	1	0.70922	109	6	5.21739
PRKG1	0	genome.wustl.edu	37	10	54042012	54042012	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	10	54042012	54042012	G	T	SNP	PRKG1	ENST00000373980	human	ensembl	74_37	+1	known	missense	c.1645	p.G549C	1.000	pirsf_cGMP-dependent_protein_kinase,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pirsf_cGMP-dependent_protein_kinase,pfam_Prot_kinase_dom,pfam_cNMP-bd_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,prints_cGMP_dep_kinase,prints_cAMP/cGMP_kin,pfscan_cNMP-bd_dom,pfscan_Prot_kinase_dom	-	no_errors	PRKG1	HGNC	ENSG00000185532				158	0	0	98	16	14.0351
PCDH15	0	genome.wustl.edu	37	10	55582333	55582333	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	10	55582333	55582333	G	A	SNP	PCDH15	ENST00000320301	human	ensembl	74_37	-1	known	missense	c.5153	p.P1718L	0.002	NULL	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH15	HGNC	ENSG00000150275				122	0	0	98	13	11.7117
BICC1	0	genome.wustl.edu	37	10	60549123	60549123	+	Silent	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	10	60549123	60549123	G	A	SNP	BICC1	ENST00000373886	human	ensembl	74_37	+1	known	silent	c.702	p.T234	0.971	NULL	pfam_KH_dom_type_1,pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_KH_dom,smart_SAM,pfscan_SAM,pfscan_KH_dom_type_1	-	no_errors	BICC1	HGNC	ENSG00000122870				218	0	0	170	29	14.5729
JMJD1C	0	genome.wustl.edu	37	10	64974663	64974663	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	10	64974663	64974663	C	T	SNP	JMJD1C	ENST00000399262	human	ensembl	74_37	-1	known	missense	c.1264	p.A422T	0.799	NULL	pfam_JmjC_dom,smart_JmjC_dom,pfscan_JmjC_dom	-	no_errors	JMJD1C	HGNC	ENSG00000171988				199	0	0	107	39	26.7123
PBLD	0	genome.wustl.edu	37	10	70051980	70051980	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	10	70051980	70051980	G	A	SNP	PBLD	ENST00000309049	human	ensembl	74_37	-1	known	missense	c.299	p.T100M	0.032	pfam_Phenazine_PhzF,pirsf_Phenazine_PhzF,tigrfam_Phenazine_PhzF	pfam_Phenazine_PhzF,pirsf_Phenazine_PhzF,tigrfam_Phenazine_PhzF	-	no_errors	PBLD	HGNC	ENSG00000108187				90	0	0	57	36	38.7097
HNRNPH3	0	genome.wustl.edu	37	10	70098402	70098402	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	10	70098402	70098402	A	G	SNP	HNRNPH3	ENST00000265866	human	ensembl	74_37	+1	known	missense	c.394	p.M132V	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	HNRNPH3	HGNC	ENSG00000096746				176	1	0.564972	140	34	19.5402
DDX50	0	genome.wustl.edu	37	10	70696705	70696705	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	10	70696705	70696705	G	A	SNP	DDX50	ENST00000373585	human	ensembl	74_37	+1	known	missense	c.1609	p.V537I	0.997	NULL	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_GUCT,pfam_Helicase_C,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DDX50	HGNC	ENSG00000107625				188	1	0.529101	101	52	33.9869
ADAMTS14	0	genome.wustl.edu	37	10	72496472	72496472	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	10	72496472	72496472	A	G	SNP	ADAMTS14	ENST00000373208	human	ensembl	74_37	+1	known	missense	c.1531	p.S511G	1.000	smart_ADAM_Cys-rich	pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,superfamily_Thrombospondin_1_rpt,smart_ADAM_Cys-rich,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS14	HGNC	ENSG00000138316				84	0	0	77	18	18.9474
DLG5	0	genome.wustl.edu	37	10	79581412	79581412	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	10	79581412	79581412	C	T	SNP	DLG5	ENST00000372391	human	ensembl	74_37	-1	known	missense	c.2830	p.G944S	0.971	NULL	pfam_PDZ,pfam_DUF622,pfam_GK/Ca_channel_bsu,superfamily_P-loop_NTPase,superfamily_PDZ,superfamily_SH3_domain,superfamily_DEATH-like_dom,smart_PDZ,smart_SH3_domain,smart_GK/Ca_channel_bsu,pfscan_CARD,pfscan_PDZ,pfscan_SH3_domain,pfscan_Guanylate_kin-like	-	no_errors	DLG5	HGNC	ENSG00000151208				53	0	0	37	14	27.451
LDB3	0	genome.wustl.edu	37	10	88441340	88441340	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	10	88441340	88441340	G	A	SNP	LDB3	ENST00000429277	human	ensembl	74_37	+1	known	missense	c.469	p.E157K	0.996	NULL	pfam_Znf_LIM,pfam_PDZ,superfamily_PDZ,smart_PDZ,smart_ZASP,smart_Znf_LIM,pfscan_Znf_LIM,pfscan_PDZ	-	no_errors	LDB3	HGNC	ENSG00000122367				81	0	0	59	14	19.1781
GLUD1	0	genome.wustl.edu	37	10	88822563	88822563	+	Silent	SNP	A	A	G			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	10	88822563	88822563	A	G	SNP	GLUD1	ENST00000277865	human	ensembl	74_37	-1	known	silent	c.771	p.G257	0.004	prints_Glu/Leu/Phe/Val_DH	pfam_Glu/Leu/Phe/Val_DH_C,pfam_Glu/Leu/Phe/Val_DH_dimer_dom,smart_Glu/Leu/Phe/Val_DH_C,prints_Glu/Leu/Phe/Val_DH	-	no_errors	GLUD1	HGNC	ENSG00000148672				66	0	0	46	24	34.2857
CH25H	0	genome.wustl.edu	37	10	90967020	90967020	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	10	90967020	90967020	C	A	SNP	CH25H	ENST00000371852	human	ensembl	74_37	-1	known	missense	c.30	p.Q10H	0.000	NULL	pfam_Fatty_acid_hydroxylase	-	no_errors	CH25H	HGNC	ENSG00000138135				12	0	0	13	8	38.0952
PLCE1	0	genome.wustl.edu	37	10	96014707	96014707	+	Nonsense_Mutation	SNP	T	T	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	10	96014707	96014707	T	A	SNP	PLCE1	ENST00000260766	human	ensembl	74_37	+1	known	nonsense	c.3455	p.L1152*	1.000	NULL	pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_Ras-assoc,pfam_RasGRF_CDC25,pfam_PLipase_C_EF-hand-like,pfam_C2_dom,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_Ras_GEF_dom,superfamily_C2_dom,smart_RasGRF_CDC25,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_dom,smart_Ras-assoc,pfscan_C2_dom,pfscan_Ras-assoc,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y,pfscan_RasGRF_CDC25,prints_Pinositol_PLipase_C	-	no_errors	PLCE1	HGNC	ENSG00000138193				393	0	0	289	72	19.9446
TCTN3	0	genome.wustl.edu	37	10	97446824	97446824	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	10	97446824	97446824	A	G	SNP	TCTN3	ENST00000371217	human	ensembl	74_37	-1	known	missense	c.829	p.Y277H	1.000	pfam_DUF1619	pfam_DUF1619	-	no_errors	TCTN3	HGNC	ENSG00000119977				106	0	0	93	22	19.1304
RRP12	0	genome.wustl.edu	37	10	99126211	99126211	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	10	99126211	99126211	C	T	SNP	RRP12	ENST00000370992	human	ensembl	74_37	-1	known	missense	c.3383	p.R1128Q	1.000	NULL	pfam_Uncharacterised_NUC173,superfamily_ARM-type_fold	-	no_errors	RRP12	HGNC	ENSG00000052749				157	0	0	163	49	23.1132
CNTN5	0	genome.wustl.edu	37	11	100126491	100126491	+	Splice_Site	SNP	G	G	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	11	100126491	100126491	G	T	SNP	CNTN5	ENST00000279463	human	ensembl	74_37	+1	known	splice_site	c.2006-1	e15-1	1.000	-	-	-	no_errors	CNTN5	HGNC	ENSG00000149972				154	1	0.645161	93	38	29.0076
KIAA1377	0	genome.wustl.edu	37	11	101833873	101833873	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	11	101833873	101833873	G	T	SNP	KIAA1377	ENST00000263468	human	ensembl	74_37	+1	known	nonsense	c.2107	p.G703*	0.000	NULL	NULL	-	no_errors	KIAA1377	HGNC	ENSG00000110318				264	0	0	204	12	5.55556
MMP8	0	genome.wustl.edu	37	11	102585436	102585436	+	Silent	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	11	102585436	102585436	G	A	SNP	MMP8	ENST00000236826	human	ensembl	74_37	-1	known	silent	c.1041	p.N347	0.056	pfam_Hemopexin-like_repeat,superfamily_Hemopexin-like_dom,smart_Hemopexin-like_repeat,pirsf_Pept_M10A_Metazoans	pfam_Pept_M10_metallopeptidase,pfam_Hemopexin-like_repeat,pfam_Peptidoglycan-bd-like,superfamily_Hemopexin-like_dom,superfamily_Peptidoglycan-bd-like,smart_Peptidase_Metallo,smart_Hemopexin-like_repeat,pirsf_Pept_M10A_Metazoans,prints_Pept_M10A	-	no_errors	MMP8	HGNC	ENSG00000118113				196	0	0	97	37	27.6119
MSANTD4	0	genome.wustl.edu	37	11	105881195	105881195	+	Silent	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	11	105881195	105881195	C	T	SNP	MSANTD4	ENST00000301919	human	ensembl	74_37	-1	known	silent	c.450	p.P150	0.801	NULL	NULL	-	no_errors	MSANTD4	HGNC	ENSG00000170903				184	0	0	101	31	23.4848
RAB39A	0	genome.wustl.edu	37	11	107799397	107799397	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	11	107799397	107799397	G	A	SNP	RAB39A	ENST00000320578	human	ensembl	74_37	+1	known	missense	c.103	p.G35R	0.991	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB39A	HGNC	ENSG00000179331				32	0	0	17	17	50
LAYN	0	genome.wustl.edu	37	11	111430909	111430909	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	11	111430909	111430909	A	G	SNP	LAYN	ENST00000375615	human	ensembl	74_37	+1	known	missense	c.875	p.Y292C	1.000	NULL	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	-	no_errors	LAYN	HGNC	ENSG00000204381				119	0	0	51	43	45.7447
BACE1	0	genome.wustl.edu	37	11	117186302	117186302	+	Silent	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	11	117186302	117186302	C	T	SNP	BACE1	ENST00000313005	human	ensembl	74_37	-1	known	silent	c.210	p.K70	1.000	superfamily_Peptidase_aspartic_dom	pfam_Aspartic_peptidase,superfamily_Peptidase_aspartic_dom,prints_Pept_A1_BACE,prints_Pept_A1_BACE1,prints_Aspartic_peptidase	-	no_errors	BACE1	HGNC	ENSG00000186318				45	0	0	23	5	17.8571
NLRX1	0	genome.wustl.edu	37	11	119044614	119044614	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	11	119044614	119044614	G	A	SNP	NLRX1	ENST00000292199	human	ensembl	74_37	+1	known	missense	c.656	p.R219H	1.000	superfamily_P-loop_NTPase,pfscan_NACHT_NTPase	superfamily_P-loop_NTPase,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase	-	no_errors	NLRX1	HGNC	ENSG00000160703				101	0	0	70	14	16.6667
CBL	0	genome.wustl.edu	37	11	119169107	119169107	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	11	119169107	119169107	C	A	SNP	CBL	ENST00000264033	human	ensembl	74_37	+1	known	missense	c.2291	p.P764H	0.513	NULL	pfam_Adaptor_Cbl_N_hlx,pfam_Adaptor_Cbl_SH2-like,pfam_Adaptor_Cbl_EF_hand-like,pfam_Znf_C3HC4_RING-type,pfam_UBA/Ts_N,superfamily_Adaptor_Cbl_N_hlx,superfamily_UBA-like,smart_Znf_RING,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Znf_RING	-	no_errors	CBL	HGNC	ENSG00000110395				111	0	0	63	31	32.9787
OR6X1	0	genome.wustl.edu	37	11	123624522	123624522	+	Silent	SNP	A	A	C			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	11	123624522	123624522	A	C	SNP	OR6X1	ENST00000327930	human	ensembl	74_37	-1	known	silent	c.705	p.T235	0.256	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR6X1	HGNC	ENSG00000221931				181	0	0	125	24	16.1074
CDON	0	genome.wustl.edu	37	11	125880287	125880287	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	11	125880287	125880287	C	T	SNP	CDON	ENST00000392693	human	ensembl	74_37	-1	known	missense	c.1501	p.E501K	1.000	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	CDON	HGNC	ENSG00000064309				63	0	0	36	8	18.1818
MUC5B	0	genome.wustl.edu	37	11	1262817	1262817	+	Silent	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	11	1262817	1262817	C	T	SNP	MUC5B	ENST00000447027	human	ensembl	74_37	+1	known	silent	c.4716	p.D1572	0.000	NULL	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,pfam_VWF_C,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_C	-	no_errors	MUC5B	HGNC	ENSG00000117983				24	0	0	24	3	11.1111
MUC5B	0	genome.wustl.edu	37	11	1268464	1268464	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	11	1268464	1268464	G	A	SNP	MUC5B	ENST00000447027	human	ensembl	74_37	+1	known	missense	c.10363	p.A3455T	0.000	NULL	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,pfam_VWF_C,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_C	-	no_errors	MUC5B	HGNC	ENSG00000117983				78	0	0	61	13	17.5676
PRDM10	0	genome.wustl.edu	37	11	129785641	129785641	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	11	129785641	129785641	T	C	SNP	PRDM10	ENST00000358825	human	ensembl	74_37	-1	known	missense	c.2452	p.M818V	1.000	NULL	pfam_Znf_C2H2,pfam_Znf_C2H2_jaz,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	PRDM10	HGNC	ENSG00000170325				230	0	0	192	31	13.9013
OPCML	0	genome.wustl.edu	37	11	132812832	132812832	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	11	132812832	132812832	G	T	SNP	OPCML	ENST00000541867	human	ensembl	74_37	-1	known	missense	c.156	p.S52R	1.000	pfam_Ig_I-set,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	OPCML	HGNC	ENSG00000183715				132	0	0	88	25	22.1239
IGSF9B	0	genome.wustl.edu	37	11	133800877	133800877	+	Splice_Site	SNP	A	A	G			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	11	133800877	133800877	A	G	SNP	IGSF9B	ENST00000321016	human	ensembl	74_37	-1	known	splice_site	c.1519+2	e11+2	1.000	-	-	-	no_errors	IGSF9B	HGNC	ENSG00000080854				30	0	0	14	5	26.3158
MOB2	0	genome.wustl.edu	37	11	1491525	1491525	+	Silent	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	11	1491525	1491525	G	A	SNP	MOB2	ENST00000329957	human	ensembl	74_37	-1	novel	silent	c.684	p.T228	0.996	pfam_Mob1_phocein,superfamily_Mob1_phocein	pfam_Mob1_phocein,superfamily_Mob1_phocein	-	no_errors	MOB2	HGNC	ENSG00000182208				148	0	0	121	24	16.5517
MOB2	0	genome.wustl.edu	37	11	1501680	1501680	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	11	1501680	1501680	C	A	SNP	MOB2	ENST00000329957	human	ensembl	74_37	-1	novel	missense	c.308	p.S103I	1.000	pfam_Mob1_phocein,superfamily_Mob1_phocein	pfam_Mob1_phocein,superfamily_Mob1_phocein	-	no_errors	MOB2	HGNC	ENSG00000182208				138	0	0	66	34	34
PIK3C2A	0	genome.wustl.edu	37	11	17111327	17111327	+	Silent	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	11	17111327	17111327	C	T	SNP	PIK3C2A	ENST00000265970	human	ensembl	74_37	-1	known	silent	c.5019	p.E1673	1.000	superfamily_C2_dom,smart_C2_dom	pfam_PI3/4_kinase_cat_dom,pfam_PInositide-3_kin_accessory_dom,pfam_PI3K_C2_dom,pfam_PI3K_Ras-bd_dom,pfam_Phox,pfam_C2_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_dom,superfamily_Phox,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,smart_Phox,pfscan_C2_dom,pfscan_Phox,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3C2A	HGNC	ENSG00000011405				314	0	0	196	108	35.5263
MYOD1	0	genome.wustl.edu	37	11	17741370	17741370	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	11	17741370	17741370	C	T	SNP	MYOD1	ENST00000250003	human	ensembl	74_37	+1	known	missense	c.41	p.T14M	0.936	smart_Basic	pfam_Basic,pfam_Myf5,pfam_bHLH_dom,superfamily_bHLH_dom,smart_Basic,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	MYOD1	HGNC	ENSG00000129152				155	0	0	111	17	13.2812
KCNC1	0	genome.wustl.edu	37	11	17793391	17793391	+	Silent	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	11	17793391	17793391	C	T	SNP	KCNC1	ENST00000265969	human	ensembl	74_37	+1	known	silent	c.750	p.G250	1.000	pfam_Ion_trans_dom,prints_K_chnl	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv3,prints_K_chnl_volt-dep_Kv3.1,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv9	-	no_errors	KCNC1	HGNC	ENSG00000129159				277	0	0	182	50	21.5517
MRGPRX3	0	genome.wustl.edu	37	11	18158919	18158919	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	11	18158919	18158919	G	A	SNP	MRGPRX3	ENST00000396275	human	ensembl	74_37	+1	known	missense	c.170	p.R57H	0.691	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	-	no_errors	MRGPRX3	HGNC	ENSG00000179826				178	1	0.558659	143	30	17.341
MRGPRX2	0	genome.wustl.edu	37	11	19076991	19076991	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	11	19076991	19076991	C	T	SNP	MRGPRX2	ENST00000329773	human	ensembl	74_37	-1	known	missense	c.959	p.G320D	0.000	NULL	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	-	no_errors	MRGPRX2	HGNC	ENSG00000183695				145	0	0	79	38	32.4786
CD81	0	genome.wustl.edu	37	11	2411682	2411682	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	11	2411682	2411682	G	A	SNP	CD81	ENST00000263645	human	ensembl	74_37	+1	known	missense	c.107	p.R36H	1.000	pfam_Tetraspanin/Peripherin	pfam_Tetraspanin/Peripherin,superfamily_Tetraspanin_EC2,prints_Tetraspanin	-	no_errors	CD81	HGNC	ENSG00000110651				180	0	0	173	26	13.0653
CD81	0	genome.wustl.edu	37	11	2417118	2417118	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	11	2417118	2417118	G	T	SNP	CD81	ENST00000263645	human	ensembl	74_37	+1	known	missense	c.479	p.S160I	0.000	pfam_Tetraspanin/Peripherin,superfamily_Tetraspanin_EC2	pfam_Tetraspanin/Peripherin,superfamily_Tetraspanin_EC2,prints_Tetraspanin	-	no_errors	CD81	HGNC	ENSG00000110651				57	0	0	47	21	30.8824
TRPM5	0	genome.wustl.edu	37	11	2436251	2436251	+	Silent	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	11	2436251	2436251	C	T	SNP	TRPM5	ENST00000452833	human	ensembl	74_37	-1	known	silent	c.1512	p.T504	0.001	NULL	superfamily_Ankyrin_rpt-contain_dom	-	no_errors	TRPM5	HGNC	ENSG00000070985				58	0	0	22	12	35.2941
OSBPL5	0	genome.wustl.edu	37	11	3140787	3140787	+	Silent	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	11	3140787	3140787	G	A	SNP	OSBPL5	ENST00000263650	human	ensembl	74_37	-1	known	silent	c.681	p.S227	0.003	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_Oxysterol-bd,pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	OSBPL5	HGNC	ENSG00000021762				140	0	0	126	10	7.35294
FBXO3	0	genome.wustl.edu	37	11	33790478	33790478	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	11	33790478	33790478	A	G	SNP	FBXO3	ENST00000265651	human	ensembl	74_37	-1	known	missense	c.277	p.Y93H	1.000	superfamily_F-box_dom	pfam_ApaG_domain,pfam_F-box_dom,superfamily_ApaG_domain,superfamily_F-box_dom,smart_F-box_dom,smart_SMI1/KNR4_like_dom,pfscan_ApaG_domain,pfscan_F-box_dom	-	no_errors	FBXO3	HGNC	ENSG00000110429				295	0	0	165	81	32.9268
CD44	0	genome.wustl.edu	37	11	35250752	35250752	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	11	35250752	35250752	G	A	SNP	CD44	ENST00000428726	human	ensembl	74_37	+1	known	missense	c.2101	p.G701R	0.987	NULL	pfam_Link,superfamily_C-type_lectin_fold,smart_Link,pfscan_Link,prints_CD44_antigen,prints_Link	-	no_errors	CD44	HGNC	ENSG00000026508				208	0	0	167	34	16.9154
STIM1	0	genome.wustl.edu	37	11	4104524	4104524	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	11	4104524	4104524	C	T	SNP	STIM1	ENST00000300737	human	ensembl	74_37	+1	known	missense	c.1270	p.R424W	1.000	NULL	pfam_SAM_2,pfam_SAM_type1,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	-	no_errors	STIM1	HGNC	ENSG00000167323				135	0	0	94	36	27.6923
ANO9	0	genome.wustl.edu	37	11	432030	432030	+	Silent	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	11	432030	432030	G	A	SNP	ANO9	ENST00000332826	human	ensembl	74_37	-1	known	silent	c.375	p.F125	0.016	NULL	pfam_Anoctamin	-	no_errors	ANO9	HGNC	ENSG00000185101				102	0	0	59	33	35.8696
CHST1	0	genome.wustl.edu	37	11	45672030	45672030	+	Silent	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	11	45672030	45672030	G	A	SNP	CHST1	ENST00000308064	human	ensembl	74_37	-1	known	silent	c.444	p.T148	0.983	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase,pirsf_Carbohydrate_sulfotransferase	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase,pirsf_Carbohydrate_sulfotransferase	-	no_errors	CHST1	HGNC	ENSG00000175264				112	0	0	81	36	30.7692
PEX16	0	genome.wustl.edu	37	11	45935969	45935969	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	11	45935969	45935969	G	A	SNP	PEX16	ENST00000241041	human	ensembl	74_37	-1	known	missense	c.592	p.R198W	0.001	pfam_Pex16	pfam_Pex16	-	no_errors	PEX16	HGNC	ENSG00000121680				71	0	0	45	33	42.3077
LRP4-AS1	0	genome.wustl.edu	37	11	46894894	46894894	+	RNA	SNP	C	C	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	11	46894894	46894894	C	A	SNP	LRP4-AS1	ENST00000502049	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.067	-	-	-	no_errors	LRP4-AS1	HGNC	ENSG00000247675				36	0	0	32	9	21.9512
NDUFS3	0	genome.wustl.edu	37	11	47602246	47602246	+	Silent	SNP	A	A	G			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	11	47602246	47602246	A	G	SNP	NDUFS3	ENST00000534208	human	ensembl	74_37	+1	putative	silent	c.303	p.A101	0.080	NULL	NULL	-	no_errors	NDUFS3	HGNC	ENSG00000213619				62	0	0	42	9	17.6471
NUP160	0	genome.wustl.edu	37	11	47828658	47828658	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	11	47828658	47828658	A	T	SNP	NUP160	ENST00000378460	human	ensembl	74_37	-1	known	missense	c.2410	p.L804I	0.978	NULL	pfam_Nucleoporin_Nup160	-	no_errors	NUP160	HGNC	ENSG00000030066				84	0	0	63	36	36.3636
OR4X1	0	genome.wustl.edu	37	11	48285771	48285771	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	11	48285771	48285771	G	A	SNP	OR4X1	ENST00000320048	human	ensembl	74_37	+1	known	missense	c.359	p.R120H	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4X1	HGNC	ENSG00000176567				114	0	0	93	14	13.0841
PTDSS2	0	genome.wustl.edu	37	11	489433	489433	+	Silent	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	11	489433	489433	G	A	SNP	PTDSS2	ENST00000308020	human	ensembl	74_37	+1	known	silent	c.888	p.T296	0.562	pfam_PSS	pfam_PSS	-	no_errors	PTDSS2	HGNC	ENSG00000174915				68	0	0	36	22	37.931
OR4C13	0	genome.wustl.edu	37	11	49974702	49974702	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	11	49974702	49974702	C	A	SNP	OR4C13	ENST00000555099	human	ensembl	74_37	+1	known	missense	c.728	p.T243K	0.202	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4C13	HGNC	ENSG00000258817				277	0	0	196	34	14.7826
OR51B4	0	genome.wustl.edu	37	11	5323054	5323054	+	Silent	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	11	5323054	5323054	G	A	SNP	OR51B4	ENST00000380224	human	ensembl	74_37	-1	known	silent	c.123	p.G41	0.033	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR51B4	HGNC	ENSG00000183251				160	0	0	91	25	21.5517
TRIM51HP	0	genome.wustl.edu	37	11	55065505	55065505	+	RNA	SNP	T	T	C			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	11	55065505	55065505	T	C	SNP	TRIM51HP	ENST00000526016	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.019	-	-	-	no_errors	TRIM51HP	HGNC	ENSG00000166007				41	0	0	28	16	36.3636
OR5AP2	0	genome.wustl.edu	37	11	56409492	56409492	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	11	56409492	56409492	C	T	SNP	OR5AP2	ENST00000544374	human	ensembl	74_37	-1	known	missense	c.427	p.V143M	0.996	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR5AP2	HGNC	ENSG00000172464				108	0	0	90	16	15.0943
PRG3	0	genome.wustl.edu	37	11	57147021	57147021	+	Silent	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	11	57147021	57147021	G	A	SNP	PRG3	ENST00000287143	human	ensembl	74_37	-1	known	silent	c.321	p.C107	0.046	smart_C-type_lectin	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin,prints_Eosinophil_major_basic	-	no_errors	PRG3	HGNC	ENSG00000156575				221	0	0	153	70	31.3901
RTN4RL2	0	genome.wustl.edu	37	11	57235469	57235469	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	11	57235469	57235469	G	A	SNP	RTN4RL2	ENST00000335099	human	ensembl	74_37	+1	known	missense	c.419	p.R140H	1.000	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	RTN4RL2	HGNC	ENSG00000186907				120	0	0	108	13	10.7438
SERPING1	0	genome.wustl.edu	37	11	57373915	57373915	+	Silent	SNP	C	C	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	11	57373915	57373915	C	A	SNP	SERPING1	ENST00000278407	human	ensembl	74_37	+1	known	silent	c.924	p.T308	0.008	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	-	no_errors	SERPING1	HGNC	ENSG00000149131				239	0	0	169	32	15.9204
OR52E4	0	genome.wustl.edu	37	11	5905736	5905736	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	11	5905736	5905736	G	T	SNP	OR52E4	ENST00000316987	human	ensembl	74_37	+1	known	missense	c.214	p.D72Y	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	OR52E4	HGNC	ENSG00000180974				224	1	0.444444	149	37	19.8925
OR52E4	0	genome.wustl.edu	37	11	5906312	5906312	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	11	5906312	5906312	C	T	SNP	OR52E4	ENST00000316987	human	ensembl	74_37	+1	known	missense	c.790	p.R264C	0.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	OR52E4	HGNC	ENSG00000180974				258	0	0	179	42	19.0045
OR56A4	0	genome.wustl.edu	37	11	6024037	6024037	+	Silent	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	11	6024037	6024037	C	T	SNP	OR56A4	ENST00000330728	human	ensembl	74_37	-1	known	silent	c.342	p.L114	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR56A4	HGNC	ENSG00000183389				107	0	0	67	44	39.6396
CCDC86	0	genome.wustl.edu	37	11	60615436	60615436	+	Silent	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	11	60615436	60615436	G	A	SNP	CCDC86	ENST00000227520	human	ensembl	74_37	+1	known	silent	c.798	p.S266	1.000	NULL	NULL	-	no_errors	CCDC86	HGNC	ENSG00000110104				221	0	0	154	77	33.3333
ZP1	0	genome.wustl.edu	37	11	60640952	60640952	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	11	60640952	60640952	A	G	SNP	ZP1	ENST00000278853	human	ensembl	74_37	+1	known	missense	c.1345	p.N449D	0.000	pfam_ZP_dom,smart_ZP_dom,pfscan_ZP_dom,prints_ZP_dom	pfam_ZP_dom,superfamily_P_trefoil,smart_P_trefoil,smart_ZP_dom,pfscan_ZP_dom,prints_ZP_dom	-	no_errors	ZP1	HGNC	ENSG00000149506				118	1	0.840336	77	33	30
SLC15A3	0	genome.wustl.edu	37	11	60704755	60704755	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	11	60704755	60704755	C	A	SNP	SLC15A3	ENST00000227880	human	ensembl	74_37	-1	known	missense	c.1682	p.G561V	0.003	superfamily_MFS_dom_general_subst_transpt	pfam_POT_fam,pfam_MFS,superfamily_MFS_dom_general_subst_transpt	-	no_errors	SLC15A3	HGNC	ENSG00000110446				90	0	0	44	22	33.3333
SLC15A3	0	genome.wustl.edu	37	11	60714281	60714281	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	11	60714281	60714281	C	T	SNP	SLC15A3	ENST00000227880	human	ensembl	74_37	-1	known	missense	c.571	p.G191S	1.000	pfam_POT_fam,pfam_MFS,superfamily_MFS_dom_general_subst_transpt	pfam_POT_fam,pfam_MFS,superfamily_MFS_dom_general_subst_transpt	-	no_errors	SLC15A3	HGNC	ENSG00000110446				171	0	0	96	45	31.9149
DDB1	0	genome.wustl.edu	37	11	61094348	61094348	+	Silent	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	11	61094348	61094348	G	A	SNP	DDB1	ENST00000301764	human	ensembl	74_37	-1	known	silent	c.567	p.H189	0.183	NULL	pfam_Cleavage/polyA-sp_fac_asu_C	-	no_errors	DDB1	HGNC	ENSG00000167986				307	0	0	237	49	17.1329
TUT1	0	genome.wustl.edu	37	11	62343367	62343367	+	Silent	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	11	62343367	62343367	C	T	SNP	TUT1	ENST00000308436	human	ensembl	74_37	-1	known	silent	c.1938	p.P646	0.991	NULL	pfam_PAP_assoc,pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	TUT1	HGNC	ENSG00000149016				212	0	0	170	11	6.07735
TUT1	0	genome.wustl.edu	37	11	62346056	62346056	+	Silent	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	11	62346056	62346056	G	A	SNP	TUT1	ENST00000308436	human	ensembl	74_37	-1	known	silent	c.1251	p.H417	0.158	NULL	pfam_PAP_assoc,pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	TUT1	HGNC	ENSG00000149016				125	0	0	83	41	33.0645
STIP1	0	genome.wustl.edu	37	11	63960668	63960668	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	11	63960668	63960668	A	G	SNP	STIP1	ENST00000305218	human	ensembl	74_37	+1	known	missense	c.128	p.N43S	1.000	smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	pfam_TPR_1,pfam_TPR_2,smart_TPR_repeat,smart_STI1_HS-bd,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	STIP1	HGNC	ENSG00000168439				133	0	0	135	11	7.53425
NRXN2	0	genome.wustl.edu	37	11	64418979	64418979	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	11	64418979	64418979	C	T	SNP	NRXN2	ENST00000265459	human	ensembl	74_37	-1	known	missense	c.2666	p.G889D	1.000	pfam_Laminin_G,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,smart_EG-like_dom,smart_Neurexin-like,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	NRXN2	HGNC	ENSG00000110076				62	0	0	25	13	34.2105
RIN1	0	genome.wustl.edu	37	11	66102359	66102359	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	11	66102359	66102359	C	T	SNP	RIN1	ENST00000311320	human	ensembl	74_37	-1	known	missense	c.911	p.S304N	0.051	NULL	pfam_VPS9,pfam_Ras-assoc,smart_SH2,smart_VPS9_subgr,smart_Ras-assoc,pfscan_Ras-assoc,pfscan_SH2,pfscan_VPS9	-	no_errors	RIN1	HGNC	ENSG00000174791				31	0	0	5	5	50
SLC29A2	0	genome.wustl.edu	37	11	66131829	66131829	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	11	66131829	66131829	T	C	SNP	SLC29A2	ENST00000357440	human	ensembl	74_37	-1	known	missense	c.1126	p.M376V	1.000	pfam_Eqnu_transpt,superfamily_MFS_dom_general_subst_transpt,prints_Eqnu_transpt,tigrfam_Eqnu_transpt	pfam_Eqnu_transpt,superfamily_MFS_dom_general_subst_transpt,prints_Eqnu_transpt,tigrfam_Eqnu_transpt	-	no_errors	SLC29A2	HGNC	ENSG00000174669				81	0	0	52	11	17.4603
PELI3	0	genome.wustl.edu	37	11	66235678	66235678	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	11	66235678	66235678	G	A	SNP	PELI3	ENST00000320740	human	ensembl	74_37	+1	known	missense	c.79	p.V27I	0.000	NULL	pfam_Pellino_fam	-	no_errors	PELI3	HGNC	ENSG00000174516				108	0	0	93	16	14.6789
BBS1	0	genome.wustl.edu	37	11	66290971	66290971	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	11	66290971	66290971	C	A	SNP	BBS1	ENST00000419755	human	ensembl	74_37	+1	known	missense	c.986	p.P329H	1.000	superfamily_Quinonprotein_ADH-like_supfam	superfamily_Quinonprotein_ADH-like_supfam	-	no_errors	CTD-3074O7.11	Clone_based_vega_gene	ENSG00000256349				129	0	0	85	39	31.4516
BBS1	0	genome.wustl.edu	37	11	66297418	66297418	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	11	66297418	66297418	G	A	SNP	BBS1	ENST00000419755	human	ensembl	74_37	+1	known	missense	c.1579	p.A527T	1.000	NULL	superfamily_Quinonprotein_ADH-like_supfam	-	no_errors	CTD-3074O7.11	Clone_based_vega_gene	ENSG00000256349				26	0	0	21	9	30
RBM14	0	genome.wustl.edu	37	11	66392333	66392333	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	11	66392333	66392333	A	G	SNP	RBM14	ENST00000310137	human	ensembl	74_37	+1	known	missense	c.986	p.N329S	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBM14	HGNC	ENSG00000239306				109	0	0	97	8	7.61905
RBM4B	0	genome.wustl.edu	37	11	66436179	66436179	+	Silent	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	11	66436179	66436179	G	A	SNP	RBM4B	ENST00000310046	human	ensembl	74_37	-1	known	silent	c.996	p.S332	0.844	NULL	pfam_RRM_dom,pfam_Znf_CCHC,smart_RRM_dom,smart_Znf_CCHC,pfscan_Znf_CCHC,pfscan_RRM_dom	-	no_errors	RBM4B	HGNC	ENSG00000173914				97	0	0	68	26	27.6596
RPS6KB2	0	genome.wustl.edu	37	11	67202123	67202123	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	11	67202123	67202123	G	A	SNP	RPS6KB2	ENST00000312629	human	ensembl	74_37	+1	known	missense	c.1226	p.R409H	0.999	pirsf_Ribosomal_S6_kinase	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Ribosomal_S6_kinase,pfscan_Prot_kinase_dom	-	no_errors	RPS6KB2	HGNC	ENSG00000175634				28	0	0	17	3	15
CORO1B	0	genome.wustl.edu	37	11	67208620	67208620	+	Silent	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	11	67208620	67208620	C	T	SNP	CORO1B	ENST00000341356	human	ensembl	74_37	-1	known	silent	c.732	p.E244	1.000	superfamily_WD40_repeat_dom	pfam_DUF1900,pfam_DUF1899,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	CORO1B	HGNC	ENSG00000172725				264	0	0	140	68	32.6923
LRP5	0	genome.wustl.edu	37	11	68192599	68192599	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	11	68192599	68192599	G	A	SNP	LRP5	ENST00000294304	human	ensembl	74_37	+1	known	missense	c.3266	p.R1089Q	0.972	pirsf_Low_density_Lipo_rcpt-rel_p5/6,pfam_LDLR_classB_rpt,smart_LDLR_classB_rpt,pfscan_LDLR_classB_rpt	pirsf_Low_density_Lipo_rcpt-rel_p5/6,pfam_LDLR_classB_rpt,pfam_LDrepeatLR_classA_rpt,superfamily_LDrepeatLR_classA_rpt,smart_LDLR_classB_rpt,smart_EG-like_dom,smart_LDrepeatLR_classA_rpt,prints_LDrepeatLR_classA_rpt,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	LRP5	HGNC	ENSG00000162337				104	0	0	83	8	8.79121
OR2D2	0	genome.wustl.edu	37	11	6913404	6913404	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	11	6913404	6913404	T	C	SNP	OR2D2	ENST00000299459	human	ensembl	74_37	-1	known	missense	c.328	p.T110A	0.446	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_Olfact_rcpt	-	no_errors	OR2D2	HGNC	ENSG00000166368				104	0	0	65	29	30.8511
SHANK2	0	genome.wustl.edu	37	11	70332838	70332838	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	11	70332838	70332838	G	A	SNP	SHANK2	ENST00000338508	human	ensembl	74_37	-1	known	missense	c.3563	p.A1188V	0.000	NULL	pfam_SAM_type1,pfam_SAM_2,pfam_SH3_2,pfam_PDZ,pfam_SH3_domain,superfamily_Ankyrin_rpt-contain_dom,superfamily_PDZ,superfamily_SAM/pointed,superfamily_SH3_domain,smart_Ankyrin_rpt,smart_SH3_domain,smart_PDZ,smart_SAM,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_PDZ,pfscan_SAM,pfscan_SH3_domain	-	no_errors	SHANK2	HGNC	ENSG00000162105				101	0	0	67	7	9.45946
FOLR3	0	genome.wustl.edu	37	11	71850033	71850033	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	11	71850033	71850033	C	T	SNP	FOLR3	ENST00000456237	human	ensembl	74_37	+1	known	missense	c.323	p.A108V	1.000	NULL	pfam_Folate_rcpt-like	-	no_errors	FOLR3	HGNC	ENSG00000110203				50	0	0	38	27	41.5385
INPPL1	0	genome.wustl.edu	37	11	71948521	71948521	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	11	71948521	71948521	G	A	SNP	INPPL1	ENST00000298229	human	ensembl	74_37	+1	known	missense	c.3233	p.R1078Q	0.989	NULL	pfam_Endo/exonuclease/phosphatase,pfam_SH2,pfam_SAM_2,pfam_SAM_type1,superfamily_Endo/exonuclease/phosphatase,superfamily_SAM/pointed,smart_SH2,smart_IPPc,smart_SAM,pfscan_SAM,pfscan_SH2,prints_SH2	-	no_errors	INPPL1	HGNC	ENSG00000165458				75	0	0	52	20	27.7778
EPS8L2	0	genome.wustl.edu	37	11	724757	724757	+	Silent	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	11	724757	724757	C	T	SNP	EPS8L2	ENST00000318562	human	ensembl	74_37	+1	known	silent	c.1488	p.Y496	0.960	pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	pfam_PTB,pfam_SH3_domain,pfam_PTB/PI_dom,pfam_SH3_2,superfamily_SH3_domain,superfamily_SAM/pointed,smart_PTB/PI_dom,smart_SH3_domain,pfscan_PTB/PI_dom,pfscan_SH3_domain	-	no_errors	EPS8L2	HGNC	ENSG00000177106				70	0	0	74	11	12.9412
ARHGEF17	0	genome.wustl.edu	37	11	73020180	73020180	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	11	73020180	73020180	G	T	SNP	ARHGEF17	ENST00000263674	human	ensembl	74_37	+1	known	missense	c.497	p.R166L	0.880	NULL	pfam_DH-domain,superfamily_DH-domain,superfamily_WD40_repeat_dom,superfamily_Vinculin/catenin,smart_DH-domain,pfscan_DH-domain	-	no_errors	ARHGEF17	HGNC	ENSG00000110237				12	0	0	14	5	26.3158
SYT9	0	genome.wustl.edu	37	11	7324616	7324616	+	Silent	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	11	7324616	7324616	G	A	SNP	SYT9	ENST00000318881	human	ensembl	74_37	+1	known	silent	c.492	p.S164	0.671	NULL	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom,prints_Synaptotagmin,prints_C2_dom	-	no_errors	SYT9	HGNC	ENSG00000170743				29	0	0	32	6	15.7895
KCTD21	0	genome.wustl.edu	37	11	77885584	77885584	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	11	77885584	77885584	G	A	SNP	KCTD21	ENST00000340067	human	ensembl	74_37	-1	known	missense	c.17	p.T6M	1.000	pfam_T1-type_BTB,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like	pfam_T1-type_BTB,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like	-	no_errors	KCTD21	HGNC	ENSG00000188997				35	0	0	28	11	28.2051
SLC25A22	0	genome.wustl.edu	37	11	792014	792014	+	Silent	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	11	792014	792014	G	A	SNP	SLC25A22	ENST00000320230	human	ensembl	74_37	-1	known	silent	c.873	p.R291	0.401	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,prints_Mit_carrier,pfscan_Mitochondrial_sb/sol_carrier	-	no_errors	SLC25A22	HGNC	ENSG00000177542				25	0	0	12	10	45.4545
ANKRD42	0	genome.wustl.edu	37	11	82936061	82936061	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	11	82936061	82936061	G	A	SNP	ANKRD42	ENST00000393392	human	ensembl	74_37	+1	known	missense	c.667	p.A223T	0.061	superfamily_Ankyrin_rpt-contain_dom,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	ANKRD42	HGNC	ENSG00000137494				166	0	0	102	16	13.5593
FAT3	0	genome.wustl.edu	37	11	92088255	92088255	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	11	92088255	92088255	C	T	SNP	FAT3	ENST00000298047	human	ensembl	74_37	+1	known	missense	c.2977	p.R993C	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Laminin_G,pfam_EGF-like_Ca-bd_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,smart_EG-like_dom,smart_Laminin_G,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT3	HGNC	ENSG00000165323				59	0	0	27	22	44.898
FAT3	0	genome.wustl.edu	37	11	92543082	92543082	+	Silent	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	11	92543082	92543082	C	T	SNP	FAT3	ENST00000298047	human	ensembl	74_37	+1	known	silent	c.9321	p.D3107	0.935	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,pfam_EGF-like_Ca-bd_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,smart_EG-like_dom,smart_Laminin_G,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT3	HGNC	ENSG00000165323				103	0	0	88	10	10.2041
FAT3	0	genome.wustl.edu	37	11	92600334	92600334	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	11	92600334	92600334	C	T	SNP	FAT3	ENST00000298047	human	ensembl	74_37	+1	known	missense	c.12086	p.P4029L	1.000	smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom	pfam_Cadherin,pfam_Laminin_G,pfam_EGF-like_Ca-bd_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,smart_EG-like_dom,smart_Laminin_G,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT3	HGNC	ENSG00000165323				21	0	0	10	7	41.1765
MAML2	0	genome.wustl.edu	37	11	95712232	95712232	+	Silent	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	11	95712232	95712232	G	A	SNP	MAML2	ENST00000524717	human	ensembl	74_37	-1	known	silent	c.3351	p.N1117	0.999	NULL	pfam_Neuroggenic_mastermind-like_N	-	no_errors	MAML2	HGNC	ENSG00000184384				140	0	0	80	38	32.2034
MAML2	0	genome.wustl.edu	37	11	95825802	95825802	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	11	95825802	95825802	G	A	SNP	MAML2	ENST00000524717	human	ensembl	74_37	-1	known	missense	c.1393	p.P465S	0.999	NULL	pfam_Neuroggenic_mastermind-like_N	-	no_errors	MAML2	HGNC	ENSG00000184384				161	0	0	112	10	8.19672
FICD	0	genome.wustl.edu	37	12	108913233	108913233	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	12	108913233	108913233	C	T	SNP	FICD	ENST00000552695	human	ensembl	74_37	+1	known	missense	c.1358	p.T453M	1.000	NULL	pfam_Fido,superfamily_Fido,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	FICD	HGNC	ENSG00000198855				58	0	0	24	25	51.0204
CORO1C	0	genome.wustl.edu	37	12	109041214	109041214	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	12	109041214	109041214	T	C	SNP	CORO1C	ENST00000420959	human	ensembl	74_37	-1	known	missense	c.1549	p.K517E	1.000	NULL	pfam_DUF1900,pfam_DUF1899,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	CORO1C	HGNC	ENSG00000110880				303	0	0	179	93	34.1912
CUX2	0	genome.wustl.edu	37	12	111729244	111729244	+	Silent	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	12	111729244	111729244	G	A	SNP	CUX2	ENST00000261726	human	ensembl	74_37	+1	known	silent	c.324	p.A108	0.004	NULL	pfam_Hmoeo_CUT,pfam_Homeobox_dom,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,superfamily_Prefoldin,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Hmoeo_CUT	-	no_errors	CUX2	HGNC	ENSG00000111249				164	0	0	109	61	35.8824
CUX2	0	genome.wustl.edu	37	12	111758485	111758485	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	12	111758485	111758485	A	G	SNP	CUX2	ENST00000261726	human	ensembl	74_37	+1	known	missense	c.2672	p.Y891C	1.000	pfam_Hmoeo_CUT,superfamily_Lambda_DNA-bd_dom,pfscan_Hmoeo_CUT	pfam_Hmoeo_CUT,pfam_Homeobox_dom,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,superfamily_Prefoldin,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Hmoeo_CUT	-	no_errors	CUX2	HGNC	ENSG00000111249				27	0	0	28	6	17.6471
PTPN11	0	genome.wustl.edu	37	12	112924286	112924286	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	12	112924286	112924286	C	T	SNP	PTPN11	ENST00000351677	human	ensembl	74_37	+1	known	missense	c.1232	p.T411M	1.000	pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,pirsf_Tyr_Pase_non-rcpt_typ-6/11,pfscan_Tyr_Pase_rcpt/non-rcpt	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_SH2,smart_SH2,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pirsf_Tyr_Pase_non-rcpt_typ-6/11,pfscan_SH2,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt,prints_SH2	-	no_errors	PTPN11	HGNC	ENSG00000179295				99	0	0	81	13	13.8298
SDS	0	genome.wustl.edu	37	12	113837436	113837436	+	Silent	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	12	113837436	113837436	G	A	SNP	SDS	ENST00000257549	human	ensembl	74_37	-1	known	silent	c.78	p.S26	0.026	pfam_Trp_syn_b_sub_like_PLP_eny_SF,superfamily_Trp_syn_b_sub_like_PLP_eny_SF	pfam_Trp_syn_b_sub_like_PLP_eny_SF,superfamily_Trp_syn_b_sub_like_PLP_eny_SF	-	no_errors	SDS	HGNC	ENSG00000135094				14	0	0	17	9	34.6154
NOS1	0	genome.wustl.edu	37	12	117655869	117655869	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	12	117655869	117655869	C	T	SNP	NOS1	ENST00000317775	human	ensembl	74_37	-1	known	missense	c.4271	p.S1424N	1.000	pirsf_NOS_euk	pfam_NO_synthase_oxygenase_dom,pfam_FAD-binding_1,pfam_Flavodoxin/NO_synth,pfam_OxRdtase_FAD/NAD-bd,pfam_PDZ,superfamily_NO_synthase_oxygenase_dom,superfamily_Riboflavin_synthase-like_b-brl,superfamily_PDZ,smart_PDZ,pirsf_NOS_euk,pfscan_PDZ,pfscan_Flavodoxin/NO_synth,prints_Flavoprot_Pyr_Nucl_cyt_Rdtase,prints_Flavdoxin	-	no_errors	NOS1	HGNC	ENSG00000089250				442	0	0	401	41	9.27602
NOS1	0	genome.wustl.edu	37	12	117705943	117705943	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	12	117705943	117705943	C	T	SNP	NOS1	ENST00000317775	human	ensembl	74_37	-1	known	missense	c.1846	p.A616T	1.000	pfam_NO_synthase_oxygenase_dom,superfamily_NO_synthase_oxygenase_dom,pirsf_NOS_euk	pfam_NO_synthase_oxygenase_dom,pfam_FAD-binding_1,pfam_Flavodoxin/NO_synth,pfam_OxRdtase_FAD/NAD-bd,pfam_PDZ,superfamily_NO_synthase_oxygenase_dom,superfamily_Riboflavin_synthase-like_b-brl,superfamily_PDZ,smart_PDZ,pirsf_NOS_euk,pfscan_PDZ,pfscan_Flavodoxin/NO_synth,prints_Flavoprot_Pyr_Nucl_cyt_Rdtase,prints_Flavdoxin	-	no_errors	NOS1	HGNC	ENSG00000089250				99	0	0	62	13	17.3333
RNF10	0	genome.wustl.edu	37	12	120990439	120990439	+	Silent	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	12	120990439	120990439	C	T	SNP	RNF10	ENST00000413266	human	ensembl	74_37	+1	known	silent	c.492	p.S164	1.000	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF10	HGNC	ENSG00000022840				138	0	0	73	31	29.8077
CAMKK2	0	genome.wustl.edu	37	12	121698197	121698197	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	12	121698197	121698197	C	T	SNP	CAMKK2	ENST00000545538	human	ensembl	74_37	-1	putative	missense	c.82	p.A28T	0.001	smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	CAMKK2	HGNC	ENSG00000110931				36	0	0	19	5	20.8333
ANAPC5	0	genome.wustl.edu	37	12	121765029	121765029	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	12	121765029	121765029	A	G	SNP	ANAPC5	ENST00000261819	human	ensembl	74_37	-1	known	missense	c.1310	p.M437T	1.000	NULL	smart_TPR_repeat	-	no_errors	ANAPC5	HGNC	ENSG00000089053				56	0	0	60	4	6.25
KDM2B	0	genome.wustl.edu	37	12	121880054	121880054	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	12	121880054	121880054	C	T	SNP	KDM2B	ENST00000377071	human	ensembl	74_37	-1	known	missense	c.3190	p.V1064I	1.000	pfam_F-box_dom	pfam_Znf_CXXC,pfam_F-box_dom,pfam_JmjC_dom,superfamily_Znf_FYVE_PHD,smart_JmjC_dom,smart_Znf_PHD,smart_Leu-rich_rpt_Cys-con_subtyp,pfscan_JmjC_dom,pfscan_Znf_PHD-finger,pfscan_Znf_CXXC	-	no_errors	KDM2B	HGNC	ENSG00000089094				44	0	0	33	10	23.2558
CCDC62	0	genome.wustl.edu	37	12	123290732	123290732	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	12	123290732	123290732	G	T	SNP	CCDC62	ENST00000253079	human	ensembl	74_37	+1	known	missense	c.1741	p.G581C	0.064	NULL	superfamily_Prefoldin	-	no_errors	CCDC62	HGNC	ENSG00000130783				173	0	0	113	61	35.0575
DNAH10	0	genome.wustl.edu	37	12	124305198	124305198	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	12	124305198	124305198	G	A	SNP	DNAH10	ENST00000409039	human	ensembl	74_37	+1	known	missense	c.3718	p.A1240T	1.000	NULL	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,superfamily_PyrdxlP-dep_Trfase,smart_AAA+_ATPase	-	no_errors	DNAH10	HGNC	ENSG00000197653				120	0	0	110	7	5.98291
BRI3BP	0	genome.wustl.edu	37	12	125497154	125497154	+	Silent	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	12	125497154	125497154	C	T	SNP	BRI3BP	ENST00000341446	human	ensembl	74_37	+1	known	silent	c.288	p.T96	0.026	NULL	NULL	-	no_errors	BRI3BP	HGNC	ENSG00000184992				366	0	0	266	107	28.6863
GPR133	0	genome.wustl.edu	37	12	131593289	131593289	+	Silent	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	12	131593289	131593289	C	T	SNP	GPR133	ENST00000261654	human	ensembl	74_37	+1	known	silent	c.1908	p.A636	0.608	pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	pfam_GPCR_2_secretin-like,pfam_GPS_dom,superfamily_ConA-like_lec_gl_sf,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	-	no_errors	GPR133	HGNC	ENSG00000111452				397	1	0.251256	320	86	21.1823
MMP17	0	genome.wustl.edu	37	12	132329951	132329951	+	Silent	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	12	132329951	132329951	C	T	SNP	MMP17	ENST00000360564	human	ensembl	74_37	+1	known	silent	c.1161	p.A387	0.994	pfam_Hemopexin-like_repeat,superfamily_Hemopexin-like_dom,smart_Hemopexin-like_repeat,pirsf_Pept_M10A_Metazoans	pfam_Pept_M10_metallopeptidase,pfam_Hemopexin-like_repeat,pfam_Peptidoglycan-bd-like,superfamily_Hemopexin-like_dom,superfamily_Peptidoglycan-bd-like,smart_Peptidase_Metallo,smart_Hemopexin-like_repeat,pirsf_Pept_M10A_Metazoans,prints_Pept_M10A	-	no_errors	MMP17	HGNC	ENSG00000198598				60	0	0	25	13	34.2105
EP400	0	genome.wustl.edu	37	12	132547164	132547164	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	12	132547164	132547164	C	T	SNP	EP400	ENST00000333577	human	ensembl	74_37	+1	known	missense	c.8360	p.T2787M	0.016	NULL	pfam_SNF2_N,pfam_Helicase/SANT-assoc_DNA-bd,pfam_Helicase_C,superfamily_P-loop_NTPase,superfamily_Homeodomain-like,smart_HAS_subgr,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Myb-like_dom,pfscan_Helicase/SANT-assoc_DNA-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	EP400	HGNC	ENSG00000183495				58	0	0	31	10	24.3902
GOLGA3	0	genome.wustl.edu	37	12	133381582	133381582	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	12	133381582	133381582	C	A	SNP	GOLGA3	ENST00000204726	human	ensembl	74_37	-1	known	missense	c.1317	p.Q439H	1.000	NULL	superfamily_Prefoldin	-	no_errors	GOLGA3	HGNC	ENSG00000090615				58	0	0	50	23	31.5068
GOLGA3	0	genome.wustl.edu	37	12	133385003	133385003	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	12	133385003	133385003	G	A	SNP	GOLGA3	ENST00000204726	human	ensembl	74_37	-1	known	missense	c.652	p.P218S	1.000	NULL	superfamily_Prefoldin	-	no_errors	GOLGA3	HGNC	ENSG00000090615				612	0	0	486	103	17.4873
MGST1	0	genome.wustl.edu	37	12	16510630	16510630	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	12	16510630	16510630	G	A	SNP	MGST1	ENST00000010404	human	ensembl	74_37	+1	known	missense	c.218	p.R73H	0.971	pfam_Membr-assoc_MAPEG	pfam_Membr-assoc_MAPEG	-	no_errors	MGST1	HGNC	ENSG00000008394				64	0	0	52	23	30.6667
ABCC9	0	genome.wustl.edu	37	12	22005061	22005061	+	Silent	SNP	A	A	G			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	12	22005061	22005061	A	G	SNP	ABCC9	ENST00000261200	human	ensembl	74_37	-1	known	silent	c.2739	p.L913	0.954	NULL	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_P-loop_NTPase,superfamily_ABC1_TM_dom,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom,prints_Sulphorea_rcpt,prints_Sulphonylurea_rcpt-2	-	no_errors	ABCC9	HGNC	ENSG00000069431				68	0	0	62	9	12.6761
KRAS	0	genome.wustl.edu	37	12	25398281	25398281	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	12	25398281	25398281	C	T	SNP	KRAS	ENST00000256078	human	ensembl	74_37	-1	known	missense	c.38	p.G13D	1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	KRAS	HGNC	ENSG00000133703				28	0	0	13	8	38.0952
CACNA1C	0	genome.wustl.edu	37	12	2795379	2795379	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	12	2795379	2795379	C	T	SNP	CACNA1C	ENST00000399634	human	ensembl	74_37	+1	known	nonsense	c.5941	p.R1981*	0.425	NULL	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCC_L_a1csu,prints_VDCCAlpha1,prints_VDCC_L_a1su	-	no_errors	CACNA1C	HGNC	ENSG00000151067				184	0	0	122	31	20.2614
FAM60A	0	genome.wustl.edu	37	12	31440620	31440620	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	12	31440620	31440620	C	T	SNP	FAM60A	ENST00000337682	human	ensembl	74_37	-1	known	missense	c.454	p.G152S	0.976	NULL	NULL	-	no_errors	FAM60A	HGNC	ENSG00000139146				99	0	0	64	9	12.3288
METTL20	0	genome.wustl.edu	37	12	31820594	31820594	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	12	31820594	31820594	T	A	SNP	METTL20	ENST00000538391	human	ensembl	74_37	+1	putative	missense	c.328	p.Y110N	0.010	NULL	NULL	-	no_errors	METTL20	HGNC	ENSG00000139160				70	0	0	41	30	42.2535
LRRK2	0	genome.wustl.edu	37	12	40697791	40697791	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	12	40697791	40697791	T	C	SNP	LRRK2	ENST00000298910	human	ensembl	74_37	+1	known	missense	c.3632	p.L1211P	0.970	smart_Leu-rich_rpt_typical-subtyp	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_MIRO-like,pfam_Small_GTPase,pfam_Leu-rich_rpt,pfam_Small_GTPase_ARF/SAR,superfamily_Kinase-like_dom,superfamily_P-loop_NTPase,superfamily_ARM-type_fold,superfamily_WD40_repeat_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Small_GTPase_Rab_type,smart_Tyr_kinase_cat_dom,smart_Ser/Thr_dual-sp_kinase_dom,prints_Small_GTPase,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,tigrfam_Small_GTP-bd_dom	-	no_errors	LRRK2	HGNC	ENSG00000188906				164	0	0	93	19	16.9643
PRICKLE1	0	genome.wustl.edu	37	12	42860065	42860065	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	12	42860065	42860065	G	A	SNP	PRICKLE1	ENST00000345127	human	ensembl	74_37	-1	known	missense	c.706	p.R236C	1.000	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	pfam_PET_domain,pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	PRICKLE1	HGNC	ENSG00000139174				114	0	0	101	13	11.4035
PUS7L	0	genome.wustl.edu	37	12	44148382	44148382	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	12	44148382	44148382	C	T	SNP	PUS7L	ENST00000344862	human	ensembl	74_37	-1	known	missense	c.667	p.D223N	1.000	superfamily_PsdUridine_synth_cat_dom,pirsf_PsdUridine_synth_TruD_euk	pfam_PsdUridine_synth_TruD,superfamily_PsdUridine_synth_cat_dom,pirsf_PsdUridine_synth_TruD_euk,pfscan_PsdUridine_synth_TruD_insert,tigrfam_PsdUridine_synth_TruD	-	no_errors	PUS7L	HGNC	ENSG00000129317				89	0	0	65	6	8.4507
LALBA	0	genome.wustl.edu	37	12	48962351	48962351	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	12	48962351	48962351	T	C	SNP	LALBA	ENST00000301046	human	ensembl	74_37	-1	known	missense	c.317	p.D106G	1.000	pfam_Glyco_hydro_22,superfamily_Lysozyme-like_dom,smart_Glyco_hydro_22,prints_Lactalbumin,prints_Glyco_hydro_22,prints_Glyco_hydro_22_lys	pfam_Glyco_hydro_22,superfamily_Lysozyme-like_dom,smart_Glyco_hydro_22,prints_Lactalbumin,prints_Glyco_hydro_22,prints_Glyco_hydro_22_lys	-	no_errors	LALBA	HGNC	ENSG00000167531				140	0	0	97	21	17.7966
KMT2D	0	genome.wustl.edu	37	12	49446436	49446436	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	12	49446436	49446436	A	G	SNP	KMT2D	ENST00000301067	human	ensembl	74_37	-1	known	missense	c.1169	p.V390A	0.962	NULL	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_box_dom,smart_Znf_PHD,smart_Znf_RING,smart_HMG_box_dom,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	KMT2D	HGNC	ENSG00000167548				61	0	0	50	4	7.40741
DHH	0	genome.wustl.edu	37	12	49488122	49488122	+	Silent	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	12	49488122	49488122	G	A	SNP	DHH	ENST00000266991	human	ensembl	74_37	-1	known	silent	c.174	p.G58	0.986	pfam_Hedgehog_signaling_dom,superfamily_Hedgehog_sig/DD-Pept_Zn-bd_dom,pirsf_Hedgehog	pfam_Hedgehog_signaling_dom,pfam_Hint_dom,superfamily_Hedgehog_sig/DD-Pept_Zn-bd_dom,smart_Hint_dom_N,smart_Hint_dom_C,pirsf_Hedgehog,prints_Hedgehog	-	no_errors	DHH	HGNC	ENSG00000139549				118	0	0	79	19	19.3878
DIP2B	0	genome.wustl.edu	37	12	51086785	51086785	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	12	51086785	51086785	G	A	SNP	DIP2B	ENST00000301180	human	ensembl	74_37	+1	known	missense	c.1708	p.G570S	1.000	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig,pfam_DMAP1-bd	-	no_errors	DIP2B	HGNC	ENSG00000066084				140	0	0	98	21	17.6471
KRT7	0	genome.wustl.edu	37	12	52635388	52635388	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	12	52635388	52635388	C	T	SNP	KRT7	ENST00000331817	human	ensembl	74_37	+1	known	missense	c.826	p.R276W	1.000	pfam_IF,superfamily_Prefoldin	pfam_IF,superfamily_Prefoldin,superfamily_Chorismate_mutase_type_II,prints_Keratin_II	-	no_errors	KRT7	HGNC	ENSG00000135480				84	0	0	62	25	28.7356
KRT82	0	genome.wustl.edu	37	12	52794311	52794311	+	Silent	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	12	52794311	52794311	C	T	SNP	KRT82	ENST00000257974	human	ensembl	74_37	-1	known	silent	c.777	p.E259	1.000	pfam_IF	pfam_IF,prints_Keratin_II,prints_Keratin_I	-	no_errors	KRT82	HGNC	ENSG00000161850				105	0	0	69	24	25.8065
KRT6B	0	genome.wustl.edu	37	12	52841159	52841159	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	12	52841159	52841159	C	A	SNP	KRT6B	ENST00000252252	human	ensembl	74_37	-1	known	missense	c.1510	p.G504C	0.868	NULL	pfam_IF,superfamily_Prefoldin,prints_Keratin_II	-	no_errors	KRT6B	HGNC	ENSG00000185479				49	0	0	29	9	23.6842
KRT74	0	genome.wustl.edu	37	12	52967139	52967139	+	Silent	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	12	52967139	52967139	C	T	SNP	KRT74	ENST00000305620	human	ensembl	74_37	-1	known	silent	c.423	p.R141	0.999	pfam_IF	pfam_IF,prints_Keratin_II	-	no_errors	KRT74	HGNC	ENSG00000170484				225	0	0	149	23	13.3721
ESPL1	0	genome.wustl.edu	37	12	53680216	53680216	+	Silent	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	12	53680216	53680216	G	A	SNP	ESPL1	ENST00000257934	human	ensembl	74_37	+1	known	silent	c.3696	p.L1232	1.000	NULL	pfam_Peptidase_C50,superfamily_DsrEFH-like	-	no_errors	ESPL1	HGNC	ENSG00000135476				210	0	0	212	24	10.1695
PFDN5	0	genome.wustl.edu	37	12	53691682	53691682	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	12	53691682	53691682	G	A	SNP	PFDN5	ENST00000551018	human	ensembl	74_37	+1	known	missense	c.256	p.V86M	1.000	pfam_Prefoldin_subunit_alpha,superfamily_Prefoldin,tigrfam_PFD_alpha	pfam_Prefoldin_subunit_alpha,superfamily_Prefoldin,tigrfam_PFD_alpha	-	no_errors	PFDN5	HGNC	ENSG00000123349				194	0	0	126	55	30.3867
MAP3K12	0	genome.wustl.edu	37	12	53876462	53876462	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	12	53876462	53876462	C	A	SNP	MAP3K12	ENST00000267079	human	ensembl	74_37	-1	known	missense	c.2026	p.G676W	0.992	pirsf_MAP3K12_MAP3K13	pirsf_MAP3K12_MAP3K13,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	MAP3K12	HGNC	ENSG00000139625				391	2	0.508906	330	52	13.6126
HOXC13	0	genome.wustl.edu	37	12	54338839	54338839	+	Silent	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	12	54338839	54338839	C	T	SNP	HOXC13	ENST00000243056	human	ensembl	74_37	+1	known	silent	c.792	p.R264	0.029	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	pfam_Homeobox_dom,pfam_HoxA13_N,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	-	no_errors	HOXC13	HGNC	ENSG00000123364				254	0	0	158	78	33.0508
NFE2	0	genome.wustl.edu	37	12	54686821	54686821	+	Silent	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	12	54686821	54686821	G	A	SNP	NFE2	ENST00000312156	human	ensembl	74_37	-1	known	silent	c.459	p.S153	0.966	NULL	pfam_bZIP,pfam_bZIP_Maf,superfamily_TF_DNA-bd,smart_bZIP,pfscan_bZIP	-	no_errors	NFE2	HGNC	ENSG00000123405				201	0	0	182	39	17.6471
NCKAP1L	0	genome.wustl.edu	37	12	54925553	54925553	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	12	54925553	54925553	A	G	SNP	NCKAP1L	ENST00000293373	human	ensembl	74_37	+1	known	missense	c.2725	p.T909A	1.000	pfam_Nck-associated_protein-1	pfam_Nck-associated_protein-1,superfamily_Nucl_hormone_rcpt_ligand-bd	-	no_errors	NCKAP1L	HGNC	ENSG00000123338				105	0	0	91	23	20.1754
OR6C65	0	genome.wustl.edu	37	12	55794998	55794998	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	12	55794998	55794998	C	T	SNP	OR6C65	ENST00000379665	human	ensembl	74_37	+1	known	missense	c.686	p.A229V	0.110	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	OR6C65	HGNC	ENSG00000205328				312	0	0	217	44	16.8582
OR6C2	0	genome.wustl.edu	37	12	55846033	55846033	+	Silent	SNP	G	G	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	12	55846033	55846033	G	T	SNP	OR6C2	ENST00000322678	human	ensembl	74_37	+1	known	silent	c.36	p.L12	0.002	NULL	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR6C2	HGNC	ENSG00000179695				170	0	0	104	19	15.4472
ERBB3	0	genome.wustl.edu	37	12	56477656	56477656	+	Silent	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	12	56477656	56477656	G	A	SNP	ERBB3	ENST00000267101	human	ensembl	74_37	+1	known	silent	c.204	p.T68	0.036	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_EGF_rcpt_L	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Furin-like_Cys-rich_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt_N_dom,smart_Furin_repeat,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	ERBB3	HGNC	ENSG00000065361				269	0	0	170	71	29.4606
ZC3H10	0	genome.wustl.edu	37	12	56515173	56515173	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	12	56515173	56515173	G	A	SNP	ZC3H10	ENST00000257940	human	ensembl	74_37	+1	known	missense	c.827	p.R276H	1.000	NULL	pfam_Znf_CCCH,smart_Znf_CCCH	-	no_errors	ZC3H10	HGNC	ENSG00000135482				88	0	0	84	15	15.1515
BAZ2A	0	genome.wustl.edu	37	12	56993616	56993616	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	12	56993616	56993616	C	T	SNP	BAZ2A	ENST00000551812	human	ensembl	74_37	-1	known	missense	c.5048	p.R1683Q	1.000	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger	pfam_Bromodomain,pfam_Methyl_CpG_DNA-bd,pfam_DDT_dom,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_DNA-bd_dom,superfamily_Znf_FYVE_PHD,smart_Methyl_CpG_DNA-bd,smart_AT_hook_DNA-bd_motif,smart_DDT_dom_subgr,smart_Znf_PHD,smart_Bromodomain,pfscan_Methyl_CpG_DNA-bd,pfscan_Znf_PHD-finger,pfscan_DDT_dom_superfamily,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BAZ2A	HGNC	ENSG00000076108				49	0	0	29	4	12.1212
LRP1	0	genome.wustl.edu	37	12	57571281	57571281	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	12	57571281	57571281	G	A	SNP	LRP1	ENST00000243077	human	ensembl	74_37	+1	known	missense	c.4268	p.R1423H	1.000	pfam_LDLR_classB_rpt,smart_LDLR_classB_rpt,pfscan_LDLR_classB_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP1	HGNC	ENSG00000123384				88	0	0	75	19	20.2128
VWF	0	genome.wustl.edu	37	12	6122709	6122709	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	12	6122709	6122709	C	T	SNP	VWF	ENST00000261405	human	ensembl	74_37	-1	known	missense	c.5558	p.R1853Q	0.491	pirsf_VWF,pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pirsf_VWF,pfam_VWF_type-D,pfam_VWF_A,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,pfam_VWF_C,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_VWF_A,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_A,pfscan_VWF_C	-	no_errors	VWF	HGNC	ENSG00000110799				136	0	0	101	16	13.6752
FAM19A2	0	genome.wustl.edu	37	12	62147455	62147455	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	12	62147455	62147455	G	A	SNP	FAM19A2	ENST00000416284	human	ensembl	74_37	-1	known	missense	c.332	p.P111L	1.000	pfam_Chemokine-like_FAM19A2	pfam_Chemokine-like_FAM19A2	-	no_errors	FAM19A2	HGNC	ENSG00000198673				155	0	0	77	30	28.0374
CD9	0	genome.wustl.edu	37	12	6342563	6342563	+	RNA	SNP	C	C	G			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	12	6342563	6342563	C	G	SNP	CD9	ENST00000546073	human	ensembl	74_37	+1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	CD9	HGNC	ENSG00000010278				80	0	0	58	18	23.6842
C12orf56	0	genome.wustl.edu	37	12	64784109	64784109	+	Silent	SNP	G	G	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	12	64784109	64784109	G	T	SNP	C12orf56	ENST00000333722	human	ensembl	74_37	-1	known	silent	c.237	p.V79	0.050	NULL	NULL	-	no_errors	C12orf56	HGNC	ENSG00000185306				39	0	0	27	12	30.7692
IRAK3	0	genome.wustl.edu	37	12	66605356	66605356	+	Silent	SNP	T	T	C			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	12	66605356	66605356	T	C	SNP	IRAK3	ENST00000261233	human	ensembl	74_37	+1	known	silent	c.567	p.Y189	0.999	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Death_domain,superfamily_Kinase-like_dom,superfamily_DEATH-like_dom,smart_Death_domain,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Death_domain,pfscan_Prot_kinase_dom	-	no_errors	IRAK3	HGNC	ENSG00000090376				134	0	0	105	10	8.69565
NINJ2	0	genome.wustl.edu	37	12	675099	675099	+	Silent	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	12	675099	675099	C	T	SNP	NINJ2	ENST00000433832	human	ensembl	74_37	-1	putative	silent	c.171	p.L57	0.000	NULL	pfam_Ninjurin	-	no_errors	NINJ2	HGNC	ENSG00000171840				70	0	0	65	10	13.3333
ACRBP	0	genome.wustl.edu	37	12	6753627	6753627	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	12	6753627	6753627	G	A	SNP	ACRBP	ENST00000229243	human	ensembl	74_37	-1	known	missense	c.620	p.P207L	0.000	pfam_Proacrosin-bd	pfam_Proacrosin-bd	-	no_errors	ACRBP	HGNC	ENSG00000111644				125	0	0	95	6	5.94059
MDM2	0	genome.wustl.edu	37	12	69229704	69229704	+	Silent	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	12	69229704	69229704	C	T	SNP	MDM2	ENST00000462284	human	ensembl	74_37	+1	known	silent	c.780	p.L260	0.008	superfamily_SWIB_MDM2_domain,pirsf_p53_neg-reg_MDM_2/4	pfam_SWIB_MDM2_domain,pfam_Znf_RanBP2,superfamily_SWIB_MDM2_domain,pirsf_p53_neg-reg_MDM_2/4,pfscan_Znf_RanBP2,pfscan_Znf_RING	-	no_errors	MDM2	HGNC	ENSG00000135679				145	0	0	133	25	15.8228
RAB3IP	0	genome.wustl.edu	37	12	70194001	70194001	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	12	70194001	70194001	T	G	SNP	RAB3IP	ENST00000550536	human	ensembl	74_37	+1	known	missense	c.949	p.L317V	0.998	NULL	pfam_Sec2p	-	no_errors	RAB3IP	HGNC	ENSG00000127328				92	0	0	65	12	15.5844
CD163L1	0	genome.wustl.edu	37	12	7522128	7522128	+	Silent	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	12	7522128	7522128	G	A	SNP	CD163L1	ENST00000313599	human	ensembl	74_37	-1	known	silent	c.3864	p.G1288	1.000	pfam_SRCR,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_SRCR	pfam_SRCR,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_SRCR,prints_SRCR	-	no_errors	CD163L1	HGNC	ENSG00000177675				236	0	0	147	86	36.9099
E2F7	0	genome.wustl.edu	37	12	77436967	77436967	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	12	77436967	77436967	C	T	SNP	E2F7	ENST00000322886	human	ensembl	74_37	-1	known	missense	c.1001	p.R334H	1.000	pfam_E2F_TDP	pfam_E2F_TDP	-	no_errors	E2F7	HGNC	ENSG00000165891				158	0	0	117	15	11.3636
PPFIA2	0	genome.wustl.edu	37	12	81799628	81799628	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	12	81799628	81799628	C	T	SNP	PPFIA2	ENST00000549396	human	ensembl	74_37	-1	known	missense	c.700	p.E234K	1.000	NULL	pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	-	no_errors	PPFIA2	HGNC	ENSG00000139220				15	0	0	13	3	18.75
VEZT	0	genome.wustl.edu	37	12	95694231	95694231	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	12	95694231	95694231	A	G	SNP	VEZT	ENST00000436874	human	ensembl	74_37	+1	known	missense	c.2122	p.T708A	0.002	NULL	NULL	-	no_errors	VEZT	HGNC	ENSG00000028203				85	0	0	56	10	15.1515
CCDC38	0	genome.wustl.edu	37	12	96275317	96275317	+	Silent	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	12	96275317	96275317	G	A	SNP	CCDC38	ENST00000344280	human	ensembl	74_37	-1	known	silent	c.936	p.F312	0.006	NULL	NULL	-	no_errors	CCDC38	HGNC	ENSG00000165972				57	0	0	30	26	46.4286
CCDC38	0	genome.wustl.edu	37	12	96300205	96300205	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	12	96300205	96300205	T	C	SNP	CCDC38	ENST00000344280	human	ensembl	74_37	-1	known	missense	c.329	p.H110R	0.081	NULL	NULL	-	no_errors	CCDC38	HGNC	ENSG00000165972				117	0	0	100	12	10.7143
TMPO	0	genome.wustl.edu	37	12	98927863	98927863	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	12	98927863	98927863	C	T	SNP	TMPO	ENST00000266732	human	ensembl	74_37	+1	known	missense	c.1828	p.R610C	0.001	pfam_LAP2alpha	pfam_LAP2alpha,pfam_LEM-like_dom,pfam_LEM_dom,superfamily_LEM/LEM-like_dom,smart_LEM_dom,pfscan_LEM_dom,pfscan_LEM-like_dom	-	no_errors	TMPO	HGNC	ENSG00000120802				92	0	0	61	28	31.4607
TMTC4	0	genome.wustl.edu	37	13	101287385	101287385	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	13	101287385	101287385	G	A	SNP	TMTC4	ENST00000342624	human	ensembl	74_37	-1	known	nonsense	c.1267	p.R423*	1.000	NULL	pfam_TPR_1,pfam_DUF1736,pfam_TPR_2,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TMTC4	HGNC	ENSG00000125247				52	0	0	24	5	17.2414
ERCC5	0	genome.wustl.edu	37	13	103518646	103518646	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	13	103518646	103518646	C	T	SNP	ERCC5	ENST00000355739	human	ensembl	74_37	+1	known	missense	c.2234	p.A745V	0.006	tigrfam_XPG/Rad2_eukaryotes	pfam_XPG_DNA_repair_N,pfam_XPG-I_dom,superfamily_5-3_exonuclease_C,smart_XPG_DNA_repair_N,smart_XPG-I_dom,smart_HhH2,prints_XPG/Rad2_eukaryotes,prints_XPG/Rad2,tigrfam_XPG/Rad2_eukaryotes	-	no_errors	ERCC5	HGNC	ENSG00000134899				114	0	0	80	15	15.7895
EFNB2	0	genome.wustl.edu	37	13	107164918	107164918	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	13	107164918	107164918	C	A	SNP	EFNB2	ENST00000245323	human	ensembl	74_37	-1	known	missense	c.365	p.W122L	1.000	pfam_Ephrin,superfamily_Cupredoxin,prints_Ephrin	pfam_Ephrin,superfamily_Cupredoxin,prints_Ephrin	-	no_errors	EFNB2	HGNC	ENSG00000125266				178	0	0	81	26	24.2991
COL4A1	0	genome.wustl.edu	37	13	110838886	110838886	+	Silent	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	13	110838886	110838886	C	T	SNP	COL4A1	ENST00000375820	human	ensembl	74_37	-1	known	silent	c.1743	p.L581	0.024	pfam_Collagen	pfam_Collagen,pfam_Collagen_VI_NC,superfamily_C-type_lectin_fold,smart_Collagen_VI_NC	-	no_errors	COL4A1	HGNC	ENSG00000187498				93	0	0	60	17	22.0779
ING1	0	genome.wustl.edu	37	13	111371924	111371924	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	13	111371924	111371924	C	T	SNP	ING1	ENST00000375774	human	ensembl	74_37	+1	known	missense	c.914	p.A305V	0.992	NULL	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	ING1	HGNC	ENSG00000153487				30	0	0	27	4	12.9032
ARHGEF7	0	genome.wustl.edu	37	13	111932912	111932912	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	13	111932912	111932912	C	T	SNP	ARHGEF7	ENST00000375741	human	ensembl	74_37	+1	known	missense	c.1676	p.S559L	0.005	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_DH-domain,pfam_SH3_2,pfam_SH3_domain,pfam_Pleckstrin_homology,pfam_CH-domain,superfamily_DH-domain,superfamily_CH-domain,superfamily_SH3_domain,smart_CH-domain,smart_SH3_domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_CH-domain,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_DH-domain,prints_SH3_domain	-	no_errors	ARHGEF7	HGNC	ENSG00000102606				212	0	0	100	32	24.2424
SOX1	0	genome.wustl.edu	37	13	112722343	112722343	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	13	112722343	112722343	G	A	SNP	SOX1	ENST00000330949	human	ensembl	74_37	+1	known	missense	c.371	p.R124H	1.000	pfam_TF_SOX	pfam_HMG_box_dom,pfam_TF_SOX,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	-	no_errors	SOX1	HGNC	ENSG00000182968				74	0	0	35	8	18.6047
F7	0	genome.wustl.edu	37	13	113768274	113768274	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	13	113768274	113768274	C	T	SNP	F7	ENST00000375581	human	ensembl	74_37	+1	known	missense	c.430	p.H144Y	0.004	pirsf_Pept_S1A_FX	pirsf_Pept_S1A_FX,pfam_Peptidase_S1,pfam_GLA_domain,pfam_Peptidase_S1A_nudel,pfam_EG-like_dom,superfamily_Trypsin-like_Pept_dom,superfamily_GLA_domain,smart_GLA_domain,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_Peptidase_S1,prints_Peptidase_S1A,prints_GLA_domain,pfscan_EG-like_dom,pfscan_GLA_domain,pfscan_Peptidase_S1	-	no_errors	F7	HGNC	ENSG00000057593				60	0	0	51	6	10.5263
PSPC1	0	genome.wustl.edu	37	13	20279895	20279895	+	Silent	SNP	A	A	G			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	13	20279895	20279895	A	G	SNP	PSPC1	ENST00000338910	human	ensembl	74_37	-1	known	silent	c.1293	p.T431	1.000	NULL	pfam_RRM_dom,pfam_NOPS,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	PSPC1	HGNC	ENSG00000121390				143	0	0	120	10	7.69231
LATS2	0	genome.wustl.edu	37	13	21563291	21563291	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	13	21563291	21563291	G	A	SNP	LATS2	ENST00000382592	human	ensembl	74_37	-1	known	missense	c.628	p.P210S	0.758	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_UBA-like,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Prot_kinase_dom	-	no_errors	LATS2	HGNC	ENSG00000150457				68	0	0	52	12	18.75
SACS	0	genome.wustl.edu	37	13	23911749	23911749	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	13	23911749	23911749	G	A	SNP	SACS	ENST00000382292	human	ensembl	74_37	-1	known	missense	c.6266	p.S2089L	0.996	NULL	pfam_HEPN,pfam_Ubiquitin_dom,superfamily_HATPase_ATP-bd,superfamily_DnaJ_domain,smart_HEPN,pfscan_HEPN,pfscan_DnaJ_domain,pfscan_Ubiquitin_supergroup	-	no_errors	SACS	HGNC	ENSG00000151835				105	0	0	57	15	20.8333
CENPJ	0	genome.wustl.edu	37	13	25473679	25473679	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	13	25473679	25473679	C	T	SNP	CENPJ	ENST00000381884	human	ensembl	74_37	-1	known	missense	c.2869	p.A957T	1.000	NULL	pfam_Tcp10_C_dom	-	no_errors	CENPJ	HGNC	ENSG00000151849				50	0	0	40	9	18.3673
MTMR6	0	genome.wustl.edu	37	13	25828013	25828013	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	13	25828013	25828013	G	A	SNP	MTMR6	ENST00000381801	human	ensembl	74_37	-1	known	missense	c.1235	p.P412L	1.000	smart_Tyr_Pase_cat	pfam_Myotubularin-like_Pase_dom,smart_Tyr_Pase_cat	-	no_errors	MTMR6	HGNC	ENSG00000139505				110	0	0	65	15	18.75
USP12	0	genome.wustl.edu	37	13	27664254	27664254	+	Silent	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	13	27664254	27664254	G	A	SNP	USP12	ENST00000282344	human	ensembl	74_37	-1	known	silent	c.615	p.D205	1.000	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	-	no_errors	USP12	HGNC	ENSG00000152484				94	0	0	54	12	18.1818
SLC7A1	0	genome.wustl.edu	37	13	30097437	30097437	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	13	30097437	30097437	C	T	SNP	SLC7A1	ENST00000380752	human	ensembl	74_37	-1	known	missense	c.1015	p.V339M	1.000	pfam_AA-permease/SLC12A_dom,pirsf_AA/rel_permease1,tigrfam_Cat_AA_permease	pfam_AA-permease/SLC12A_dom,pirsf_AA/rel_permease1,tigrfam_Cat_AA_permease	-	no_errors	SLC7A1	HGNC	ENSG00000139514				244	0	0	163	33	16.8367
STARD13	0	genome.wustl.edu	37	13	33704275	33704275	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	13	33704275	33704275	G	A	SNP	STARD13	ENST00000336934	human	ensembl	74_37	-1	known	missense	c.539	p.T180M	1.000	NULL	pfam_START_lipid-bd_dom,pfam_RhoGAP_dom,pfam_SAM_2,superfamily_Rho_GTPase_activation_prot,superfamily_SAM/pointed,smart_RhoGAP_dom,smart_START_lipid-bd_dom,pfscan_START_lipid-bd_dom,pfscan_RhoGAP_dom	-	no_errors	STARD13	HGNC	ENSG00000133121				55	0	0	36	12	25
POSTN	0	genome.wustl.edu	37	13	38148746	38148746	+	Silent	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	13	38148746	38148746	C	T	SNP	POSTN	ENST00000379747	human	ensembl	74_37	-1	known	silent	c.2052	p.V684	1.000	pirsf_TGFb-ind_bIGH3/osteoblast_fac2	pfam_FAS1_domain,superfamily_FAS1_domain,smart_FAS1_domain,pirsf_TGFb-ind_bIGH3/osteoblast_fac2,pfscan_EMI_domain,pfscan_FAS1_domain	-	no_errors	POSTN	HGNC	ENSG00000133110				45	0	0	24	4	14.2857
FNDC3A	0	genome.wustl.edu	37	13	49705409	49705409	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	13	49705409	49705409	C	T	SNP	FNDC3A	ENST00000492622	human	ensembl	74_37	+1	known	missense	c.389	p.P130L	1.000	NULL	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	FNDC3A	HGNC	ENSG00000102531				259	0	0	198	34	14.6552
UTP14C	0	genome.wustl.edu	37	13	52605100	52605100	+	Silent	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	13	52605100	52605100	C	T	SNP	UTP14C	ENST00000521776	human	ensembl	74_37	+1	known	silent	c.2160	p.V720	0.989	pfam_SSU_processome_Utp14	pfam_SSU_processome_Utp14	-	no_errors	UTP14C	HGNC	ENSG00000253797				232	0	0	121	41	25.3086
THSD1	0	genome.wustl.edu	37	13	52952361	52952361	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	13	52952361	52952361	C	T	SNP	THSD1	ENST00000258613	human	ensembl	74_37	-1	known	missense	c.1744	p.A582T	0.022	NULL	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	-	no_errors	THSD1	HGNC	ENSG00000136114				207	0	0	160	41	20.398
THSD1	0	genome.wustl.edu	37	13	52952664	52952664	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	13	52952664	52952664	C	T	SNP	THSD1	ENST00000258613	human	ensembl	74_37	-1	known	missense	c.1441	p.G481R	0.001	NULL	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	-	no_errors	THSD1	HGNC	ENSG00000136114				131	0	0	79	19	19.3878
PCDH8	0	genome.wustl.edu	37	13	53422421	53422421	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	13	53422421	53422421	C	T	SNP	PCDH8	ENST00000377942	human	ensembl	74_37	-1	known	missense	c.151	p.E51K	0.992	pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH8	HGNC	ENSG00000136099				246	0	0	166	24	12.6316
PCDH17	0	genome.wustl.edu	37	13	58207121	58207121	+	Silent	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	13	58207121	58207121	G	A	SNP	PCDH17	ENST00000377918	human	ensembl	74_37	+1	known	silent	c.441	p.P147	0.002	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH17	HGNC	ENSG00000118946				49	0	0	28	11	28.2051
PCDH17	0	genome.wustl.edu	37	13	58208648	58208648	+	Silent	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	13	58208648	58208648	G	A	SNP	PCDH17	ENST00000377918	human	ensembl	74_37	+1	known	silent	c.1968	p.T656	0.884	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH17	HGNC	ENSG00000118946				284	0	0	197	49	19.9187
PCDH17	0	genome.wustl.edu	37	13	58209133	58209133	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	13	58209133	58209133	C	T	SNP	PCDH17	ENST00000377918	human	ensembl	74_37	+1	known	missense	c.2453	p.P818L	1.000	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH17	HGNC	ENSG00000118946				54	0	0	30	4	11.7647
PCDH20	0	genome.wustl.edu	37	13	61987429	61987429	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	13	61987429	61987429	C	T	SNP	PCDH20	ENST00000409186	human	ensembl	74_37	-1	known	missense	c.803	p.R268H	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH20	HGNC	ENSG00000197991				108	0	0	61	22	26.506
PCDH9	0	genome.wustl.edu	37	13	67477738	67477738	+	Splice_Site	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	13	67477738	67477738	C	T	SNP	PCDH9	ENST00000377865	human	ensembl	74_37	-1	known	splice_site	c.3037-1	e2-1	1.000	-	-	-	no_errors	PCDH9	HGNC	ENSG00000184226				79	0	0	31	5	13.8889
PCDH9	0	genome.wustl.edu	37	13	67801412	67801412	+	Silent	SNP	T	T	G			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	13	67801412	67801412	T	G	SNP	PCDH9	ENST00000377865	human	ensembl	74_37	-1	known	silent	c.1161	p.T387	0.573	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Protocadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH9	HGNC	ENSG00000184226				283	1	0.352113	146	44	23.1579
LMO7	0	genome.wustl.edu	37	13	76432062	76432062	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	13	76432062	76432062	C	T	SNP	LMO7	ENST00000377534	human	ensembl	74_37	+1	known	missense	c.4823	p.T1608M	1.000	NULL	pfam_CH-domain,pfam_PDZ,superfamily_CH-domain,superfamily_PDZ,smart_CH-domain,smart_PDZ,pfscan_CH-domain,pfscan_PDZ,prints_SM22_calponin	-	no_errors	LMO7	HGNC	ENSG00000136153				116	0	0	67	18	21.1765
LMO7	0	genome.wustl.edu	37	13	76432183	76432183	+	RNA	SNP	A	A	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	13	76432183	76432183	A	T	SNP	LMO7	ENST00000605961	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.209	-	-	-	no_errors	LMO7	HGNC	ENSG00000136153				38	0	0	28	4	12.5
UGGT2	0	genome.wustl.edu	37	13	96601605	96601605	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	13	96601605	96601605	C	T	SNP	UGGT2	ENST00000376747	human	ensembl	74_37	-1	known	missense	c.1439	p.R480H	1.000	NULL	pfam_UDP-g_GGtrans,pfam_Glyco_trans_8	-	no_errors	UGGT2	HGNC	ENSG00000102595				52	0	0	23	11	32.3529
IPO5	0	genome.wustl.edu	37	13	98671871	98671871	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	13	98671871	98671871	C	T	SNP	IPO5	ENST00000261574	human	ensembl	74_37	+1	known	missense	c.2927	p.A976V	0.886	superfamily_ARM-type_fold	pfam_HEAT,superfamily_ARM-type_fold,pfscan_Importin-beta_N	-	no_errors	IPO5	HGNC	ENSG00000065150				125	0	0	65	23	26.1364
WARS	0	genome.wustl.edu	37	14	100801237	100801237	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	14	100801237	100801237	C	A	SNP	WARS	ENST00000355338	human	ensembl	74_37	-1	known	missense	c.1391	p.R464L	1.000	tigrfam_Trp-tRNA-ligase	pfam_aa-tRNA-synth_Ic,pfam_WHEP-TRS,superfamily_S15_NS1_RNA-bd,pfscan_WHEP-TRS,prints_Trp-tRNA-ligase,tigrfam_Trp-tRNA-ligase	-	no_errors	WARS	HGNC	ENSG00000140105				141	0	0	85	14	14.1414
DYNC1H1	0	genome.wustl.edu	37	14	102452687	102452687	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	14	102452687	102452687	C	T	SNP	DYNC1H1	ENST00000360184	human	ensembl	74_37	+1	known	missense	c.2125	p.R709C	1.000	pfam_Dynein_heavy_dom-1	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,superfamily_Thioredoxin-like_fold,superfamily_Glutathione-S-Trfase_C-like,smart_AAA+_ATPase	-	no_errors	DYNC1H1	HGNC	ENSG00000197102				65	0	0	35	10	22.2222
DYNC1H1	0	genome.wustl.edu	37	14	102466418	102466418	+	Silent	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	14	102466418	102466418	G	A	SNP	DYNC1H1	ENST00000360184	human	ensembl	74_37	+1	known	silent	c.3897	p.K1299	1.000	NULL	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,superfamily_Thioredoxin-like_fold,superfamily_Glutathione-S-Trfase_C-like,smart_AAA+_ATPase	-	no_errors	DYNC1H1	HGNC	ENSG00000197102				94	0	0	61	10	14.0845
TECPR2	0	genome.wustl.edu	37	14	102912234	102912234	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	14	102912234	102912234	A	C	SNP	TECPR2	ENST00000359520	human	ensembl	74_37	+1	known	missense	c.3025	p.T1009P	1.000	pfam_Beta-propeller_rpt_TECPR,superfamily_RCC1/BLIP-II,smart_Beta-propeller_rpt_TECPR	pfam_Beta-propeller_rpt_TECPR,superfamily_WD40_repeat_dom,superfamily_RCC1/BLIP-II,smart_WD40_repeat,smart_Beta-propeller_rpt_TECPR	-	no_errors	TECPR2	HGNC	ENSG00000196663				164	1	0.606061	109	36	24.8276
AHNAK2	0	genome.wustl.edu	37	14	105409888	105409888	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	14	105409888	105409888	T	C	SNP	AHNAK2	ENST00000333244	human	ensembl	74_37	-1	known	missense	c.11900	p.K3967R	0.973	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK2	HGNC	ENSG00000185567				551	0	0	336	71	17.4447
AHNAK2	0	genome.wustl.edu	37	14	105409902	105409902	+	Silent	SNP	C	C	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	14	105409902	105409902	C	A	SNP	AHNAK2	ENST00000333244	human	ensembl	74_37	-1	known	silent	c.11886	p.T3962	0.000	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK2	HGNC	ENSG00000185567				510	3	0.584795	320	68	17.5258
AHNAK2	0	genome.wustl.edu	37	14	105409908	105409908	+	Silent	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	14	105409908	105409908	G	A	SNP	AHNAK2	ENST00000333244	human	ensembl	74_37	-1	known	silent	c.11880	p.D3960	0.000	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK2	HGNC	ENSG00000185567				488	2	0.408163	308	58	15.847
AHNAK2	0	genome.wustl.edu	37	14	105409965	105409965	+	Silent	SNP	T	T	C			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	14	105409965	105409965	T	C	SNP	AHNAK2	ENST00000333244	human	ensembl	74_37	-1	known	silent	c.11823	p.P3941	0.000	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK2	HGNC	ENSG00000185567				434	1	0.229885	256	84	24.7059
AHNAK2	0	genome.wustl.edu	37	14	105412039	105412039	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	14	105412039	105412039	C	T	SNP	AHNAK2	ENST00000333244	human	ensembl	74_37	-1	known	missense	c.9749	p.G3250D	0.042	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK2	HGNC	ENSG00000185567				353	0	0	242	38	13.5714
OR4K15	0	genome.wustl.edu	37	14	20444458	20444458	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	14	20444458	20444458	C	T	SNP	OR4K15	ENST00000305051	human	ensembl	74_37	+1	known	missense	c.781	p.R261C	0.317	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4K15	HGNC	ENSG00000169488				217	0	0	126	15	10.6383
MMP14	0	genome.wustl.edu	37	14	23315098	23315098	+	Silent	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	14	23315098	23315098	C	T	SNP	MMP14	ENST00000311852	human	ensembl	74_37	+1	known	silent	c.1599	p.G533	0.915	pfam_Pept_M10A_metallopeptidase_C	pirsf_Pept_M10A_Metazoans,pfam_Hemopexin-like_repeat,pfam_Pept_M10_metallopeptidase,pfam_Pept_M10A_metallopeptidase_C,pfam_Peptidoglycan-bd-like,superfamily_Hemopexin-like_dom,superfamily_Peptidoglycan-bd-like,smart_Peptidase_Metallo,smart_Hemopexin-like_repeat,prints_Pept_M10A	-	no_errors	MMP14	HGNC	ENSG00000157227				50	0	0	27	10	27.027
AP1G2	0	genome.wustl.edu	37	14	24031226	24031226	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	14	24031226	24031226	G	T	SNP	AP1G2	ENST00000308724	human	ensembl	74_37	-1	known	missense	c.1678	p.L560M	1.000	pfam_Clathrin/coatomer_adapt-like_N,superfamily_ARM-type_fold,pirsf_AP1_complex_gsu	pfam_Clathrin/coatomer_adapt-like_N,pfam_Clathrin_a/b/g-adaptin_app_Ig,superfamily_ARM-type_fold,superfamily_Coatomer/clathrin_app_Ig-like,smart_Clathrin_a/b/g-adaptin_app_Ig,pirsf_AP1_complex_gsu,pfscan_Clathrin_g-adaptin_app	-	no_errors	AP1G2	HGNC	ENSG00000213983				38	0	0	26	3	10.3448
JPH4	0	genome.wustl.edu	37	14	24045135	24045135	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	14	24045135	24045135	G	A	SNP	JPH4	ENST00000356300	human	ensembl	74_37	-1	known	missense	c.910	p.R304C	1.000	pfam_MORN,smart_MORN,pirsf_Junctophilin	pfam_MORN,smart_MORN,pirsf_Junctophilin	-	no_errors	JPH4	HGNC	ENSG00000092051				33	0	0	15	8	34.7826
DCAF11	0	genome.wustl.edu	37	14	24589026	24589026	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	14	24589026	24589026	G	A	SNP	DCAF11	ENST00000446197	human	ensembl	74_37	+1	known	missense	c.1013	p.R338H	1.000	superfamily_WD40_repeat_dom,pirsf_WD_repeat_p23,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pirsf_WD_repeat_p23,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	DCAF11	HGNC	ENSG00000100897				41	0	0	30	8	21.0526
ADCY4	0	genome.wustl.edu	37	14	24802094	24802094	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	14	24802094	24802094	C	T	SNP	ADCY4	ENST00000310677	human	ensembl	74_37	-1	known	missense	c.260	p.R87H	1.000	NULL	pfam_A/G_cyclase,pfam_Adenylate_cyclase-like,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY4	HGNC	ENSG00000129467				29	0	0	30	7	18.9189
NFATC4	0	genome.wustl.edu	37	14	24842495	24842495	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	14	24842495	24842495	C	T	SNP	NFATC4	ENST00000413692	human	ensembl	74_37	+1	known	missense	c.1667	p.A556V	1.000	pfam_RHD,superfamily_p53-like_TF_DNA-bd,pfscan_RHD	pfam_RHD,pfam_IPT,superfamily_p53-like_TF_DNA-bd,superfamily_Ig_E-set,smart_IPT,pfscan_RHD,prints_NFAT	-	no_errors	NFATC4	HGNC	ENSG00000100968				74	0	0	51	5	8.92857
SRP54	0	genome.wustl.edu	37	14	35498275	35498275	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	14	35498275	35498275	G	A	SNP	SRP54	ENST00000216774	human	ensembl	74_37	+1	known	missense	c.1432	p.A478T	1.000	NULL	pfam_SRP54_GTPase_dom,pfam_Signal_recog_particle_SRP54_M,pfam_Signal_recog_particl_SRP54_hlx,pfam_CobW/HypB/UreG_dom,pfam_CobQ/CobB/MinD/ParA_Nub-bd_dom,superfamily_P-loop_NTPase,superfamily_Signal_recog_particle_SRP54_M,superfamily_Signal_recog_particl_SRP54_hlx,smart_Signal_recog_particl_SRP54_hlx,smart_AAA+_ATPase,smart_SRP54_GTPase_dom,tigrfam_SRP54_euk	-	no_errors	SRP54	HGNC	ENSG00000100883				127	0	0	62	22	26.1905
SSTR1	0	genome.wustl.edu	37	14	38679662	38679662	+	Silent	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	14	38679662	38679662	C	T	SNP	SSTR1	ENST00000267377	human	ensembl	74_37	+1	known	silent	c.1068	p.T356	0.051	prints_Somatstn_rcpt_1	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_Somatstn_rcpt_1,prints_GPCR_Rhodpsn,prints_Somatstn_rcpt,prints_Opioid_rcpt,prints_NPY_rcpt,prints_Neuropept_B/W_rcpt	-	no_errors	SSTR1	HGNC	ENSG00000139874				153	0	0	94	17	15.3153
LRFN5	0	genome.wustl.edu	37	14	42356185	42356185	+	Silent	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	14	42356185	42356185	C	T	SNP	LRFN5	ENST00000298119	human	ensembl	74_37	+1	known	silent	c.357	p.F119	1.000	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Leu-rich_rpt_typical-subtyp,smart_Ig_sub,smart_Ig_sub2,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	LRFN5	HGNC	ENSG00000165379				127	1	0.78125	65	18	21.6867
FAM179B	0	genome.wustl.edu	37	14	45542625	45542625	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	14	45542625	45542625	G	A	SNP	FAM179B	ENST00000361577	human	ensembl	74_37	+1	known	missense	c.5024	p.R1675Q	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	FAM179B	HGNC	ENSG00000198718				136	0	0	95	18	15.9292
SAV1	0	genome.wustl.edu	37	14	51111571	51111571	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	14	51111571	51111571	G	A	SNP	SAV1	ENST00000324679	human	ensembl	74_37	-1	known	nonsense	c.697	p.R233*	1.000	superfamily_WW_dom	pfam_WW_dom,superfamily_WW_dom,smart_WW_dom,pfscan_SARAH_dom,pfscan_WW_dom	-	no_errors	SAV1	HGNC	ENSG00000151748				148	0	0	92	20	17.8571
DDHD1	0	genome.wustl.edu	37	14	53522429	53522429	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	14	53522429	53522429	G	A	SNP	DDHD1	ENST00000323669	human	ensembl	74_37	-1	known	missense	c.2194	p.R732C	1.000	pfam_DDHD,pfscan_DDHD	pfam_DDHD,pfscan_DDHD	-	no_errors	DDHD1	HGNC	ENSG00000100523				309	0	0	227	42	15.6134
TRMT5	0	genome.wustl.edu	37	14	61446285	61446285	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	14	61446285	61446285	G	A	SNP	TRMT5	ENST00000261249	human	ensembl	74_37	-1	known	nonsense	c.331	p.R111*	1.000	NULL	pfam_tRNA_Trfase_Trm5/Tyw2	-	no_errors	TRMT5	HGNC	ENSG00000126814				382	0	0	227	53	18.9286
SYNE2	0	genome.wustl.edu	37	14	64520155	64520155	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	14	64520155	64520155	C	A	SNP	SYNE2	ENST00000358025	human	ensembl	74_37	+1	known	missense	c.9524	p.P3175Q	1.000	NULL	pfam_CH-domain,pfam_KASH,pfam_Spectrin_repeat,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE2	HGNC	ENSG00000054654				89	0	0	52	22	29.7297
FUT8	0	genome.wustl.edu	37	14	66209091	66209091	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	14	66209091	66209091	C	T	SNP	FUT8	ENST00000360689	human	ensembl	74_37	+1	known	missense	c.1691	p.T564M	0.998	pirsf_Alpha1_6FUT_euk	superfamily_SH3_domain,smart_SH3_domain,pirsf_Alpha1_6FUT_euk	-	no_errors	FUT8	HGNC	ENSG00000033170				79	0	0	42	5	10.6383
PLEK2	0	genome.wustl.edu	37	14	67864541	67864541	+	Silent	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	14	67864541	67864541	G	A	SNP	PLEK2	ENST00000216446	human	ensembl	74_37	-1	known	silent	c.45	p.G15	0.993	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_Pleckstrin_homology,pfam_DEP_dom,smart_Pleckstrin_homology,smart_DEP_dom,pfscan_DEP_dom,pfscan_Pleckstrin_homology	-	no_errors	PLEK2	HGNC	ENSG00000100558				40	0	0	20	4	16.6667
RDH12	0	genome.wustl.edu	37	14	68191306	68191306	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	14	68191306	68191306	G	A	SNP	RDH12	ENST00000267502	human	ensembl	74_37	+1	known	missense	c.185	p.R62Q	1.000	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,pfam_Epimerase_deHydtase	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,pfam_Epimerase_deHydtase,prints_Glc/ribitol_DH,prints_DH_sc/Rdtase_SDR	-	no_errors	RDH12	HGNC	ENSG00000139988				98	0	0	69	30	30.303
DCAF5	0	genome.wustl.edu	37	14	69521511	69521511	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	14	69521511	69521511	G	A	SNP	DCAF5	ENST00000341516	human	ensembl	74_37	-1	known	missense	c.1892	p.S631L	1.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DCAF5	HGNC	ENSG00000139990				211	0	0	119	36	23.2258
DPF3	0	genome.wustl.edu	37	14	73140953	73140953	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	14	73140953	73140953	C	T	SNP	DPF3	ENST00000366353	human	ensembl	74_37	-1	known	missense	c.1031	p.R344H	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	DPF3	HGNC	ENSG00000205683				27	0	0	19	5	20.8333
DCAF4	0	genome.wustl.edu	37	14	73425386	73425386	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	14	73425386	73425386	C	T	SNP	DCAF4	ENST00000358377	human	ensembl	74_37	+1	known	missense	c.1361	p.S454F	0.992	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DCAF4	HGNC	ENSG00000119599				142	0	0	90	24	21.0526
PAPLN	0	genome.wustl.edu	37	14	73732083	73732083	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	14	73732083	73732083	G	A	SNP	PAPLN	ENST00000427855	human	ensembl	74_37	+1	known	missense	c.3131	p.R1044H	0.829	pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_Ig_V-set,pfam_Immunoglobulin,pfam_Prot_inh_Kunz-m,pfam_PLAC,superfamily_Prot_inh_Kunz-m,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,smart_Prot_inh_Kunz-m,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Prot_inh_Kunz-m,pfscan_Ig-like_dom,prints_Peptidase_M12B_ADAM-TS,prints_Prot_inh_Kunz-m	-	no_errors	PAPLN	HGNC	ENSG00000100767				92	0	0	72	18	20
ELMSAN1	0	genome.wustl.edu	37	14	74193655	74193655	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	14	74193655	74193655	C	T	SNP	ELMSAN1	ENST00000286523	human	ensembl	74_37	-1	known	missense	c.2183	p.R728Q	1.000	pfam_ELM2_dom,pfscan_ELM2_dom	pfam_ELM2_dom,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_ELM2_dom	-	no_errors	ELMSAN1	HGNC	ENSG00000156030				76	0	0	55	21	27.6316
YLPM1	0	genome.wustl.edu	37	14	75276988	75276988	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	14	75276988	75276988	G	A	SNP	YLPM1	ENST00000325680	human	ensembl	74_37	+1	known	missense	c.5093	p.R1698H	1.000	NULL	superfamily_P-loop_NTPase	-	no_errors	YLPM1	HGNC	ENSG00000119596				141	0	0	77	17	18.0851
MLH3	0	genome.wustl.edu	37	14	75513336	75513336	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	14	75513336	75513336	G	A	SNP	MLH3	ENST00000355774	human	ensembl	74_37	-1	known	missense	c.3023	p.P1008L	0.001	NULL	pfam_MutL_C,pfam_DNA_mismatch_repair_C,pfam_HATPase_ATP-bd,superfamily_HATPase_ATP-bd,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_WW_dom,smart_MutL_C	-	no_errors	MLH3	HGNC	ENSG00000119684				254	1	0.392157	184	40	17.8571
TMED8	0	genome.wustl.edu	37	14	77809701	77809701	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	14	77809701	77809701	G	A	SNP	TMED8	ENST00000216468	human	ensembl	74_37	-1	known	missense	c.580	p.R194W	1.000	superfamily_GOLD,pfscan_GOLD	superfamily_GOLD,pfscan_GOLD	-	no_errors	TMED8	HGNC	ENSG00000100580				62	0	0	35	8	18.6047
SAMD15	0	genome.wustl.edu	37	14	77857438	77857438	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	14	77857438	77857438	G	A	SNP	SAMD15	ENST00000216471	human	ensembl	74_37	+1	known	missense	c.1876	p.G626S	0.997	NULL	pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	-	no_errors	SAMD15	HGNC	ENSG00000100583				126	0	0	77	21	21.4286
NRXN3	0	genome.wustl.edu	37	14	79746672	79746672	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	14	79746672	79746672	G	A	SNP	NRXN3	ENST00000428277	human	ensembl	74_37	+1	known	missense	c.38	p.R13H	1.000	NULL	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,smart_Neurexin-like,pfscan_Laminin_G	-	no_errors	NRXN3	HGNC	ENSG00000021645				358	0	0	201	53	20.8661
SEL1L	0	genome.wustl.edu	37	14	81943446	81943446	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	14	81943446	81943446	G	A	SNP	SEL1L	ENST00000336735	human	ensembl	74_37	-1	known	missense	c.2255	p.A752V	1.000	NULL	pfam_Sel1-like,pfam_FN_type2_col-bd,superfamily_Kringle-like,smart_FN_type2_col-bd,smart_Sel1-like,pfscan_FN_type2_col-bd	-	no_errors	SEL1L	HGNC	ENSG00000071537				159	0	0	82	12	12.766
SERPINA6	0	genome.wustl.edu	37	14	94776089	94776089	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	14	94776089	94776089	C	T	SNP	SERPINA6	ENST00000341584	human	ensembl	74_37	-1	known	missense	c.868	p.A290T	0.000	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	-	no_errors	SERPINA6	HGNC	ENSG00000170099				105	0	0	67	14	17.284
TCL6	0	genome.wustl.edu	37	14	96134571	96134571	+	RNA	SNP	C	C	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	14	96134571	96134571	C	A	SNP	TCL6	ENST00000352367	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.016	-	-	-	no_errors	TCL6	HGNC	ENSG00000187621				211	0	0	125	33	20.8861
ASB7	0	genome.wustl.edu	37	15	101152629	101152629	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	15	101152629	101152629	G	A	SNP	ASB7	ENST00000332783	human	ensembl	74_37	+1	known	missense	c.208	p.G70R	1.000	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_SOCS_C,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_SOCS_C,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SOCS_C,prints_Ankyrin_rpt	-	no_errors	ASB7	HGNC	ENSG00000183475				111	0	0	95	8	7.76699
CYFIP1	0	genome.wustl.edu	37	15	22999391	22999391	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	15	22999391	22999391	G	A	SNP	CYFIP1	ENST00000313077	human	ensembl	74_37	+1	known	missense	c.3263	p.C1088Y	1.000	pfam_Cytoplasmic_FMR1-int,pirsf_Cytoplasmic_FMR1-int_sub,prints_Cytoplasmic_FMR1-int	pfam_Cytoplasmic_FMR1-int,pirsf_Cytoplasmic_FMR1-int_sub,prints_Cytoplasmic_FMR1-int	-	no_errors	CYFIP1	HGNC	ENSG00000068793				97	0	0	57	26	31.3253
HERC2	0	genome.wustl.edu	37	15	28419593	28419593	+	Silent	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	15	28419593	28419593	G	A	SNP	HERC2	ENST00000261609	human	ensembl	74_37	-1	known	silent	c.10005	p.H3335	0.141	NULL	pfam_Reg_chr_condens,pfam_HECT,pfam_CPH_domain,pfam_Mib_Herc2,pfam_Cyt_B5-like_heme/steroid-bd,pfam_Znf_ZZ,pfam_APC_su10/DOC_dom,superfamily_RCC1/BLIP-II,superfamily_HECT,superfamily_Galactose-bd-like,superfamily_Cyt_B5-like_heme/steroid-bd,superfamily_UBA-like,superfamily_CUB_dom,smart_Beta-propeller_rpt_TECPR,smart_Znf_ZZ,smart_HECT,pfscan_HECT,pfscan_Znf_ZZ,pfscan_Reg_chr_condens,pfscan_Cyt_B5-like_heme/steroid-bd,prints_Reg_chr_condens	-	no_errors	HERC2	HGNC	ENSG00000128731				51	0	0	34	5	12.8205
HERC2	0	genome.wustl.edu	37	15	28473545	28473545	+	Silent	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	15	28473545	28473545	C	T	SNP	HERC2	ENST00000261609	human	ensembl	74_37	-1	known	silent	c.5283	p.P1761	0.473	NULL	pfam_Reg_chr_condens,pfam_HECT,pfam_CPH_domain,pfam_Mib_Herc2,pfam_Cyt_B5-like_heme/steroid-bd,pfam_Znf_ZZ,pfam_APC_su10/DOC_dom,superfamily_RCC1/BLIP-II,superfamily_HECT,superfamily_Galactose-bd-like,superfamily_Cyt_B5-like_heme/steroid-bd,superfamily_UBA-like,superfamily_CUB_dom,smart_Beta-propeller_rpt_TECPR,smart_Znf_ZZ,smart_HECT,pfscan_HECT,pfscan_Znf_ZZ,pfscan_Reg_chr_condens,pfscan_Cyt_B5-like_heme/steroid-bd,prints_Reg_chr_condens	-	no_errors	HERC2	HGNC	ENSG00000128731				66	0	0	29	13	30.9524
FAN1	0	genome.wustl.edu	37	15	31206224	31206224	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	15	31206224	31206224	C	T	SNP	FAN1	ENST00000362065	human	ensembl	74_37	+1	known	nonsense	c.1741	p.R581*	1.000	NULL	pfam_VRR_NUC,smart_Znf_Rad18_put	-	no_errors	FAN1	HGNC	ENSG00000198690				125	0	0	74	23	23.7113
LPCAT4	0	genome.wustl.edu	37	15	34652368	34652368	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	15	34652368	34652368	G	C	SNP	LPCAT4	ENST00000314891	human	ensembl	74_37	-1	known	missense	c.1186	p.L396V	0.736	NULL	pfam_Plipid/glycerol_acylTrfase,smart_Plipid/glycerol_acylTrfase	-	no_errors	LPCAT4	HGNC	ENSG00000176454				250	0	0	131	38	22.4852
ENSG00000259198	0	genome.wustl.edu	37	15	40605371	40605371	+	RNA	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	15	40605371	40605371	G	A	SNP	ENSG00000259198	ENST00000559030	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	RP11-133K1.6	Clone_based_vega_gene	ENSG00000259198				26	0	0	6	4	40
CASC5	0	genome.wustl.edu	37	15	40915554	40915554	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	15	40915554	40915554	C	T	SNP	CASC5	ENST00000346991	human	ensembl	74_37	+1	known	missense	c.3170	p.A1057V	0.000	NULL	NULL	-	no_errors	CASC5	HGNC	ENSG00000137812				124	0	0	53	9	14.5161
JMJD7-PLA2G4B	0	genome.wustl.edu	37	15	42132848	42132848	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	15	42132848	42132848	G	T	SNP	JMJD7-PLA2G4B	ENST00000382448	human	ensembl	74_37	+1	known	missense	c.902	p.R301M	1.000	pfam_C2_dom,superfamily_C2_dom,smart_JmjC_dom,smart_C2_dom,pfscan_C2_dom	pfam_LysoPLipase_cat_dom,pfam_C2_dom,superfamily_Acyl_Trfase/lysoPLipase,superfamily_C2_dom,smart_JmjC_dom,smart_C2_dom,smart_LysoPLipase_cat_dom,pfscan_JmjC_dom,pfscan_C2_dom,pfscan_LysoPLipase_cat_dom	-	no_errors	JMJD7-PLA2G4B	HGNC	ENSG00000168970				130	0	0	71	20	21.978
JMJD7-PLA2G4B	0	genome.wustl.edu	37	15	42134398	42134398	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	15	42134398	42134398	C	A	SNP	JMJD7-PLA2G4B	ENST00000382448	human	ensembl	74_37	+1	known	missense	c.1322	p.P441H	0.323	NULL	pfam_LysoPLipase_cat_dom,pfam_C2_dom,superfamily_Acyl_Trfase/lysoPLipase,superfamily_C2_dom,smart_JmjC_dom,smart_C2_dom,smart_LysoPLipase_cat_dom,pfscan_JmjC_dom,pfscan_C2_dom,pfscan_LysoPLipase_cat_dom	-	no_errors	JMJD7-PLA2G4B	HGNC	ENSG00000168970				196	0	0	93	28	23.1405
CAPN3	0	genome.wustl.edu	37	15	42681202	42681202	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	15	42681202	42681202	G	T	SNP	CAPN3	ENST00000397163	human	ensembl	74_37	+1	known	nonsense	c.709	p.E237*	1.000	pfam_Peptidase_C2_calpain_cat,smart_Peptidase_C2_calpain_cat,pfscan_Peptidase_C2_calpain_cat,prints_Calpain_cysteine_protease	pfam_Peptidase_C2_calpain_cat,pfam_Calpain_domain_III,superfamily_Calpain_domain_III,smart_Peptidase_C2_calpain_cat,smart_Calpain_III,smart_EF_hand_dom,pfscan_EF_hand_dom,pfscan_Peptidase_C2_calpain_cat,prints_Calpain_cysteine_protease	-	no_errors	CAPN3	HGNC	ENSG00000092529				198	0	0	115	36	23.8411
ZNF106	0	genome.wustl.edu	37	15	42743249	42743249	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	15	42743249	42743249	C	A	SNP	ZNF106	ENST00000263805	human	ensembl	74_37	-1	known	missense	c.1152	p.L384F	0.005	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_Znf_C2H2-like,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	ZNF106	HGNC	ENSG00000103994				379	1	0.263158	213	67	23.9286
TGM7	0	genome.wustl.edu	37	15	43585663	43585663	+	Silent	SNP	G	G	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	15	43585663	43585663	G	T	SNP	TGM7	ENST00000452443	human	ensembl	74_37	-1	known	silent	c.177	p.T59	0.205	pfam_Transglutaminase_N,superfamily_Ig_E-set	pfam_Transglutaminase_N,pfam_Transglutaminase_C,pfam_Transglutaminase-like,superfamily_Ig_E-set,superfamily_Transglutaminase_C,smart_Transglutaminase-like	-	no_errors	TGM7	HGNC	ENSG00000159495				312	0	0	219	60	21.5054
MAP1A	0	genome.wustl.edu	37	15	43816368	43816368	+	Silent	SNP	C	C	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	15	43816368	43816368	C	A	SNP	MAP1A	ENST00000399453	human	ensembl	74_37	+1	known	silent	c.2697	p.S899	1.000	NULL	NULL	-	no_errors	MAP1A	HGNC	ENSG00000166963				95	0	0	66	14	17.5
DUOX1	0	genome.wustl.edu	37	15	45454089	45454089	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	15	45454089	45454089	G	A	SNP	DUOX1	ENST00000321429	human	ensembl	74_37	+1	known	missense	c.4010	p.R1337Q	1.000	pfam_FAD-bd_8,superfamily_Riboflavin_synthase-like_b-brl	pfam_Haem_peroxidase_animal,pfam_Fe_red_NAD-bd_6,pfam_FAD-bd_8,pfam_Fe3_Rdtase_TM_dom,pfam_EF_hand_dom,superfamily_Haem_peroxidase,superfamily_Riboflavin_synthase-like_b-brl,smart_EF_hand_dom,prints_Haem_peroxidase_animal_subgr,prints_Recoverin,pfscan_EF_hand_dom,pfscan_Haem_peroxidase_animal	-	no_errors	DUOX1	HGNC	ENSG00000137857				75	0	0	54	11	16.9231
SPATA5L1	0	genome.wustl.edu	37	15	45694912	45694912	+	Silent	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	15	45694912	45694912	C	T	SNP	SPATA5L1	ENST00000305560	human	ensembl	74_37	+1	known	silent	c.285	p.S95	0.016	NULL	pfam_ATPase_AAA_core,pfam_ATPase_dyneun-rel_AAA,pfam_DNA_helicase_Holl-junc_RuvB_N,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	SPATA5L1	HGNC	ENSG00000171763				9	0	0	6	3	33.3333
ATP8B4	0	genome.wustl.edu	37	15	50271884	50271884	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	15	50271884	50271884	A	G	SNP	ATP8B4	ENST00000284509	human	ensembl	74_37	-1	known	missense	c.964	p.S322P	1.000	pfam_ATPase_P-typ_transduc_dom_A,tigrfam_ATPase_P-typ_Plipid-transp,tigrfam_Cation_transp_P_typ_ATPase	pfam_ATPase_P-typ_transduc_dom_A,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Plipid-transp,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP8B4	HGNC	ENSG00000104043				247	0	0	137	36	20.8092
MAPK6	0	genome.wustl.edu	37	15	52356399	52356399	+	Silent	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	15	52356399	52356399	C	T	SNP	MAPK6	ENST00000261845	human	ensembl	74_37	+1	known	silent	c.1368	p.N456	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_MAPK_ERK3/4	-	no_errors	MAPK6	HGNC	ENSG00000069956				49	0	0	32	9	21.9512
RAB27A	0	genome.wustl.edu	37	15	55522599	55522599	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	15	55522599	55522599	C	T	SNP	RAB27A	ENST00000336787	human	ensembl	74_37	-1	known	missense	c.239	p.R80K	1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Ras,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Ras,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB27A	HGNC	ENSG00000069974				191	0	0	117	9	7.14286
HERC1	0	genome.wustl.edu	37	15	63952005	63952005	+	Silent	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	15	63952005	63952005	G	A	SNP	HERC1	ENST00000443617	human	ensembl	74_37	-1	known	silent	c.9354	p.S3118	1.000	NULL	pfam_Reg_chr_condens,pfam_HECT,pfam_WD40_repeat,pfam_SPRY_rcpt,superfamily_RCC1/BLIP-II,superfamily_HECT,superfamily_WD40_repeat_dom,superfamily_ConA-like_lec_gl_sf,superfamily_UBA-like,superfamily_ARM-type_fold,smart_SPla/RYanodine_receptor_subgr,smart_WD40_repeat,smart_HECT,pfscan_B30.2/SPRY,pfscan_HECT,pfscan_Reg_chr_condens,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Reg_chr_condens	-	no_errors	HERC1	HGNC	ENSG00000103657				81	0	0	50	14	21.875
CILP	0	genome.wustl.edu	37	15	65499120	65499120	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	15	65499120	65499120	C	T	SNP	CILP	ENST00000261883	human	ensembl	74_37	-1	known	missense	c.424	p.G142R	1.000	NULL	pfam_Ig_I-set,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,superfamily_CarboxyPept-like_regulatory,smart_Thrombospondin_1_rpt,smart_Ig_sub,smart_Ig_sub2,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like_dom	-	no_errors	CILP	HGNC	ENSG00000138615				243	0	0	136	41	23.1638
DPP8	0	genome.wustl.edu	37	15	65739248	65739248	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	15	65739248	65739248	G	A	SNP	DPP8	ENST00000341861	human	ensembl	74_37	-1	known	missense	c.2671	p.R891C	0.989	NULL	pfam_Peptidase_S9B,pfam_Peptidase_S9,pfam_X-Pro-like_dom	-	no_errors	DPP8	HGNC	ENSG00000074603				264	0	0	162	27	14.2857
TIPIN	0	genome.wustl.edu	37	15	66629397	66629397	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	15	66629397	66629397	C	T	SNP	TIPIN	ENST00000261881	human	ensembl	74_37	-1	known	missense	c.805	p.A269T	0.000	NULL	pfam_Swi3	-	no_errors	TIPIN	HGNC	ENSG00000075131				230	0	0	140	34	19.5402
SKOR1	0	genome.wustl.edu	37	15	68118543	68118543	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	15	68118543	68118543	C	T	SNP	SKOR1	ENST00000380035	human	ensembl	74_37	+1	known	missense	c.377	p.T126M	1.000	pfam_Transform_Ski,superfamily_DNA-bd_dom_put	pfam_Transform_Ski,pfam_c-SKI_SMAD4-bd_dom,superfamily_DNA-bd_dom_put,superfamily_SAND_dom-like	-	no_errors	SKOR1	HGNC	ENSG00000188779				162	0	0	109	24	18.0451
HEXA	0	genome.wustl.edu	37	15	72637826	72637826	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	15	72637826	72637826	G	A	SNP	HEXA	ENST00000268097	human	ensembl	74_37	-1	known	missense	c.1487	p.A496V	1.000	superfamily_Glycoside_hydrolase_SF	pfam_Glyco_hydro_20_cat-core,pfam_Glyco_hydro_20b,superfamily_Glycoside_hydrolase_SF,prints_Beta_hexosaminidase_sua/sub	-	no_errors	HEXA	HGNC	ENSG00000213614				91	0	0	54	15	21.7391
ISLR2	0	genome.wustl.edu	37	15	74425464	74425464	+	Silent	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	15	74425464	74425464	C	T	SNP	ISLR2	ENST00000361742	human	ensembl	74_37	+1	known	silent	c.369	p.S123	1.000	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,superfamily_Fibronectin_type3,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,pfscan_Ig-like_dom	-	no_errors	ISLR2	HGNC	ENSG00000167178				150	0	0	104	17	14.0496
LMAN1L	0	genome.wustl.edu	37	15	75117834	75117834	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	15	75117834	75117834	G	A	SNP	LMAN1L	ENST00000309664	human	ensembl	74_37	+1	known	missense	c.1469	p.S490N	0.010	NULL	pfam_Lectin_leg,superfamily_ConA-like_lec_gl_sf	-	no_errors	LMAN1L	HGNC	ENSG00000140506				460	0	0	313	77	19.7436
CSPG4	0	genome.wustl.edu	37	15	75968944	75968944	+	Silent	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	15	75968944	75968944	C	T	SNP	CSPG4	ENST00000308508	human	ensembl	74_37	-1	known	silent	c.5916	p.R1972	0.000	NULL	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,pfscan_Laminin_G	-	no_errors	CSPG4	HGNC	ENSG00000173546				188	0	0	133	12	8.27586
ADAMTS7	0	genome.wustl.edu	37	15	79083119	79083119	+	Silent	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	15	79083119	79083119	C	T	SNP	ADAMTS7	ENST00000388820	human	ensembl	74_37	-1	known	silent	c.921	p.T307	0.084	pfam_Peptidase_M12B,pfscan_Peptidase_M12B	pfam_ADAM_spacer1,pfam_Peptidase_M12B_N,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS7	HGNC	ENSG00000136378				181	0	0	77	29	27.3585
AP3B2	0	genome.wustl.edu	37	15	83334219	83334219	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	15	83334219	83334219	C	T	SNP	AP3B2	ENST00000261722	human	ensembl	74_37	-1	known	missense	c.1961	p.R654H	1.000	pirsf_AP3_beta	pfam_Clathrin/coatomer_adapt-like_N,superfamily_ARM-type_fold,superfamily_Coatomer/clathrin_app_Ig-like,pirsf_AP3_beta	-	no_errors	AP3B2	HGNC	ENSG00000103723				160	0	0	90	16	15.0943
KLHL25	0	genome.wustl.edu	37	15	86311780	86311780	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	15	86311780	86311780	G	A	SNP	KLHL25	ENST00000337975	human	ensembl	74_37	-1	known	missense	c.1262	p.A421V	0.999	pfam_Kelch_1,smart_Kelch_1,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BACK,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL25	HGNC	ENSG00000183655				103	0	0	83	8	8.79121
KIF7	0	genome.wustl.edu	37	15	90171797	90171797	+	Silent	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	15	90171797	90171797	C	T	SNP	KIF7	ENST00000394412	human	ensembl	74_37	-1	known	silent	c.3885	p.Q1295	0.034	NULL	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF7	HGNC	ENSG00000166813				121	0	0	96	14	12.7273
TXNDC11	0	genome.wustl.edu	37	16	11773386	11773386	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	16	11773386	11773386	G	T	SNP	TXNDC11	ENST00000356957	human	ensembl	74_37	-1	known	missense	c.2623	p.Q875K	1.000	NULL	pfam_Thioredoxin_domain,superfamily_Thioredoxin-like_fold	-	no_errors	TXNDC11	HGNC	ENSG00000153066				84	0	0	49	19	27.9412
GNPTG	0	genome.wustl.edu	37	16	1411874	1411874	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	16	1411874	1411874	T	C	SNP	GNPTG	ENST00000204679	human	ensembl	74_37	+1	known	missense	c.235	p.Y79H	1.000	pfam_PRKCSH,superfamily_Man6P_isomerase_rcpt-bd_dom	pfam_PRKCSH,superfamily_Man6P_isomerase_rcpt-bd_dom	-	no_errors	GNPTG	HGNC	ENSG00000090581				106	0	0	43	34	44.1558
TMC7	0	genome.wustl.edu	37	16	19051753	19051753	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	16	19051753	19051753	G	A	SNP	TMC7	ENST00000304381	human	ensembl	74_37	+1	known	missense	c.1322	p.R441H	0.995	NULL	pfam_TMC	-	no_errors	TMC7	HGNC	ENSG00000170537				113	1	0.877193	74	36	32.7273
GPRC5B	0	genome.wustl.edu	37	16	19883732	19883732	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	16	19883732	19883732	G	A	SNP	GPRC5B	ENST00000537135	human	ensembl	74_37	-1	known	missense	c.514	p.R172C	1.000	pfam_GPCR_3_C,pfscan_GPCR_3_C	pfam_GPCR_3_C,pfscan_GPCR_3_C	-	no_errors	GPRC5B	HGNC	ENSG00000167191				79	0	0	59	17	22.3684
DNAH3	0	genome.wustl.edu	37	16	21170726	21170726	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	16	21170726	21170726	C	T	SNP	DNAH3	ENST00000261383	human	ensembl	74_37	-1	known	missense	c.37	p.A13T	0.002	NULL	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,superfamily_Prefoldin,smart_AAA+_ATPase	-	no_errors	DNAH3	HGNC	ENSG00000158486				228	0	0	168	39	18.8406
ZP2	0	genome.wustl.edu	37	16	21216851	21216851	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	16	21216851	21216851	T	G	SNP	ZP2	ENST00000219593	human	ensembl	74_37	-1	known	missense	c.583	p.K195Q	0.000	NULL	pfam_ZP_dom,smart_ZP_dom,pfscan_ZP_dom,prints_ZP_dom	-	no_errors	ZP2	HGNC	ENSG00000103310				196	0	0	106	61	36.5269
PKD1	0	genome.wustl.edu	37	16	2158560	2158560	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	16	2158560	2158560	C	T	SNP	PKD1	ENST00000262304	human	ensembl	74_37	-1	known	missense	c.6608	p.R2203H	0.000	pfam_PKD/REJ-like,pfscan_REJ-like,tigrfam_Polycystin_cat	pfam_PKD_dom,pfam_PKD1_2_channel,pfam_PKD/REJ-like,pfam_PLAT/LH2_dom,pfam_C-type_lectin,pfam_WSC_carb-bd,pfam_GPS_dom,superfamily_C-type_lectin_fold,superfamily_Lipase_LipOase,superfamily_PKD_dom,superfamily_Fe_hydrogenase,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_WSC_carb-bd_subgr,smart_PKD/Chitinase_dom,smart_C-type_lectin,smart_GPS_dom,smart_PLAT/LH2_dom,prints_PKD_1,pfscan_GPS_dom,pfscan_C-type_lectin,pfscan_PKD_dom,pfscan_PLAT/LH2_dom,pfscan_REJ-like,pfscan_WSC_carb-bd,tigrfam_Polycystin_cat	-	no_errors	PKD1	HGNC	ENSG00000008710				31	0	0	21	12	36.3636
PKD1	0	genome.wustl.edu	37	16	2163281	2163281	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	16	2163281	2163281	C	T	SNP	PKD1	ENST00000262304	human	ensembl	74_37	-1	known	missense	c.2866	p.V956M	0.111	pfam_PKD_dom,smart_PKD/Chitinase_dom,tigrfam_Polycystin_cat	pfam_PKD_dom,pfam_PKD1_2_channel,pfam_PKD/REJ-like,pfam_PLAT/LH2_dom,pfam_C-type_lectin,pfam_WSC_carb-bd,pfam_GPS_dom,superfamily_C-type_lectin_fold,superfamily_Lipase_LipOase,superfamily_PKD_dom,superfamily_Fe_hydrogenase,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_WSC_carb-bd_subgr,smart_PKD/Chitinase_dom,smart_C-type_lectin,smart_GPS_dom,smart_PLAT/LH2_dom,prints_PKD_1,pfscan_GPS_dom,pfscan_C-type_lectin,pfscan_PKD_dom,pfscan_PLAT/LH2_dom,pfscan_REJ-like,pfscan_WSC_carb-bd,tigrfam_Polycystin_cat	-	no_errors	PKD1	HGNC	ENSG00000008710				258	0	0	221	30	11.9522
RRN3P1	0	genome.wustl.edu	37	16	21817457	21817457	+	RNA	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	16	21817457	21817457	G	A	SNP	RRN3P1	ENST00000546471	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.981	-	-	-	no_errors	RRN3P1	HGNC	ENSG00000248124				15	0	0	9	4	30.7692
EEF2K	0	genome.wustl.edu	37	16	22291646	22291646	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	16	22291646	22291646	G	A	SNP	EEF2K	ENST00000263026	human	ensembl	74_37	+1	known	missense	c.2017	p.E673K	1.000	pfam_Sel1-like,pirsf_Elongation_factor_2_kinase	pfam_MHCK_EF2_kinase,pfam_Sel1-like,superfamily_Kinase-like_dom,smart_MHCK_EF2_kinase,pirsf_Elongation_factor_2_kinase,pfscan_MHCK_EF2_kinase	-	no_errors	EEF2K	HGNC	ENSG00000103319				76	0	0	45	21	31.8182
USP31	0	genome.wustl.edu	37	16	23091344	23091344	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	16	23091344	23091344	C	A	SNP	USP31	ENST00000219689	human	ensembl	74_37	-1	known	missense	c.2099	p.R700M	1.000	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	-	no_errors	USP31	HGNC	ENSG00000103404				87	0	0	92	14	13.2075
COG7	0	genome.wustl.edu	37	16	23444982	23444982	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	16	23444982	23444982	G	A	SNP	COG7	ENST00000307149	human	ensembl	74_37	-1	known	missense	c.694	p.L232F	1.000	pfam_COG7	pfam_COG7	-	no_errors	COG7	HGNC	ENSG00000168434				93	0	0	60	21	25.9259
PALB2	0	genome.wustl.edu	37	16	23637590	23637590	+	Silent	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	16	23637590	23637590	C	T	SNP	PALB2	ENST00000261584	human	ensembl	74_37	-1	known	silent	c.2715	p.Q905	0.947	superfamily_WD40_repeat_dom	superfamily_WD40_repeat_dom	-	no_errors	PALB2	HGNC	ENSG00000083093				124	0	0	104	12	10.3448
LCMT1	0	genome.wustl.edu	37	16	25123281	25123281	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	16	25123281	25123281	T	C	SNP	LCMT1	ENST00000399069	human	ensembl	74_37	+1	known	missense	c.77	p.V26A	1.000	pirsf_Leu_CO_MeTrfase_LCMT1	pfam_LCM_MeTrfase,pirsf_Leu_CO_MeTrfase_LCMT1	-	no_errors	LCMT1	HGNC	ENSG00000205629				44	0	0	20	8	28.5714
GTF3C1	0	genome.wustl.edu	37	16	27556722	27556722	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	16	27556722	27556722	C	T	SNP	GTF3C1	ENST00000356183	human	ensembl	74_37	-1	known	missense	c.344	p.R115H	0.183	NULL	pfam_TFIIIC_Bblock-bd	-	no_errors	GTF3C1	HGNC	ENSG00000077235				223	0	0	114	67	37.0166
TBC1D10B	0	genome.wustl.edu	37	16	30369641	30369641	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	16	30369641	30369641	C	T	SNP	TBC1D10B	ENST00000409939	human	ensembl	74_37	-1	known	missense	c.2051	p.R684H	0.980	NULL	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D10B	HGNC	ENSG00000169221				9	0	0	3	4	57.1429
RNF40	0	genome.wustl.edu	37	16	30780556	30780556	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	16	30780556	30780556	A	G	SNP	RNF40	ENST00000324685	human	ensembl	74_37	+1	known	missense	c.2297	p.E766G	1.000	NULL	smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF40	HGNC	ENSG00000103549				216	1	0.460829	148	74	33.3333
SETD1A	0	genome.wustl.edu	37	16	30990956	30990956	+	Silent	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	16	30990956	30990956	G	A	SNP	SETD1A	ENST00000262519	human	ensembl	74_37	+1	known	silent	c.3849	p.S1283	0.039	NULL	pfam_COMPASS_Set1_N-SET,pfam_SET_dom,pfam_RRM_dom,smart_RRM_dom,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_RRM_dom	-	no_errors	SETD1A	HGNC	ENSG00000099381				45	0	0	36	7	16.2791
HSD3B7	0	genome.wustl.edu	37	16	30999231	30999231	+	Silent	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	16	30999231	30999231	C	T	SNP	HSD3B7	ENST00000297679	human	ensembl	74_37	+1	known	silent	c.837	p.C279	0.386	pfam_3Beta_OHSteriod_DH/Estase	pfam_3Beta_OHSteriod_DH/Estase,pfam_Epimerase_deHydtase,pfam_Male_sterile_NAD-bd,pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,pfam_Polysac_CapD-like,pfam_dTDP_dehydrorham_reduct,pfam_NmrA	-	no_errors	HSD3B7	HGNC	ENSG00000099377				412	0	0	314	61	16.2667
ZNF668	0	genome.wustl.edu	37	16	31073185	31073185	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	16	31073185	31073185	G	A	SNP	ZNF668	ENST00000426488	human	ensembl	74_37	-1	known	missense	c.1133	p.A378V	0.989	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF668	HGNC	ENSG00000167394				129	0	0	116	54	31.7647
ITGAM	0	genome.wustl.edu	37	16	31336659	31336659	+	Silent	SNP	C	C	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	16	31336659	31336659	C	A	SNP	ITGAM	ENST00000544665	human	ensembl	74_37	+1	known	silent	c.2442	p.S814	1.000	pfam_Integrin_alpha-2	pfam_Integrin_alpha-2,pfam_VWF_A,pfam_FG-GAP,pfam_Integrin_alpha_C_CS,smart_Int_alpha_beta-p,smart_VWF_A,pfscan_VWF_A,prints_Integrin_alpha	-	no_errors	ITGAM	HGNC	ENSG00000169896				78	0	0	59	11	15.7143
ITGAD	0	genome.wustl.edu	37	16	31422507	31422507	+	Silent	SNP	C	C	G			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	16	31422507	31422507	C	G	SNP	ITGAD	ENST00000389202	human	ensembl	74_37	+1	known	silent	c.1467	p.G489	0.858	smart_Int_alpha_beta-p	pfam_Integrin_alpha-2,pfam_VWF_A,pfam_Integrin_alpha_C_CS,smart_Int_alpha_beta-p,smart_VWF_A,pfscan_VWF_A,prints_Integrin_alpha	-	no_errors	ITGAD	HGNC	ENSG00000156886				196	0	0	118	71	37.5661
ZNF267	0	genome.wustl.edu	37	16	31926819	31926819	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	16	31926819	31926819	T	C	SNP	ZNF267	ENST00000300870	human	ensembl	74_37	+1	known	missense	c.1249	p.F417L	0.882	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF267	HGNC	ENSG00000185947				95	0	0	81	6	6.89655
OR2C1	0	genome.wustl.edu	37	16	3405968	3405968	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	16	3405968	3405968	C	T	SNP	OR2C1	ENST00000304936	human	ensembl	74_37	+1	known	nonsense	c.28	p.Q10*	0.000	NULL	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2C1	HGNC	ENSG00000168158				111	0	0	64	38	37.2549
ZNF174	0	genome.wustl.edu	37	16	3458393	3458393	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	16	3458393	3458393	C	T	SNP	ZNF174	ENST00000268655	human	ensembl	74_37	+1	known	missense	c.698	p.A233V	0.178	NULL	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF174	HGNC	ENSG00000103343				171	0	0	144	27	15.7895
NLRC3	0	genome.wustl.edu	37	16	3591813	3591813	+	RNA	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	16	3591813	3591813	C	T	SNP	NLRC3	ENST00000419350	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	NLRC3	HGNC	ENSG00000167984				27	0	0	20	6	23.0769
SLX4	0	genome.wustl.edu	37	16	3640516	3640516	+	Silent	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	16	3640516	3640516	C	T	SNP	SLX4	ENST00000294008	human	ensembl	74_37	-1	known	silent	c.3123	p.Q1041	0.000	NULL	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like	-	no_errors	SLX4	HGNC	ENSG00000188827				223	1	0.446429	130	68	34.3434
TRAP1	0	genome.wustl.edu	37	16	3736128	3736128	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	16	3736128	3736128	G	A	SNP	TRAP1	ENST00000246957	human	ensembl	74_37	-1	known	missense	c.340	p.R114W	1.000	pfam_HATPase_ATP-bd,superfamily_HATPase_ATP-bd,smart_HATPase_ATP-bd,pirsf_Hsp90_fam,prints_Hsp90_N	pfam_Hsp90_fam,pfam_HATPase_ATP-bd,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_HATPase_ATP-bd,smart_HATPase_ATP-bd,pirsf_Hsp90_fam,prints_Hsp90_N	-	no_errors	TRAP1	HGNC	ENSG00000126602				110	0	0	67	28	29.4737
AXIN1	0	genome.wustl.edu	37	16	396309	396309	+	Silent	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	16	396309	396309	C	T	SNP	AXIN1	ENST00000262320	human	ensembl	74_37	-1	known	silent	c.717	p.P239	0.996	NULL	pfam_DIX,pfam_RGS_dom,pfam_Axin_b-cat-bd,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal_superfam,smart_DIX,pfscan_DIX,pfscan_Regulat_G_prot_signal_superfam,prints_RGS_dom	-	no_errors	AXIN1	HGNC	ENSG00000103126				203	0	0	161	30	15.7068
ADCY9	0	genome.wustl.edu	37	16	4164370	4164370	+	Silent	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	16	4164370	4164370	G	A	SNP	ADCY9	ENST00000294016	human	ensembl	74_37	-1	known	silent	c.1074	p.V358	0.746	smart_A/G_cyclase	pfam_A/G_cyclase,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY9	HGNC	ENSG00000162104				197	0	0	119	74	38.342
CORO7-PAM16	0	genome.wustl.edu	37	16	4410338	4410338	+	Silent	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	16	4410338	4410338	G	A	SNP	CORO7-PAM16	ENST00000572467	human	ensembl	74_37	-1	known	silent	c.2049	p.R683	0.191	NULL	pfam_DUF1900,pfam_WD40_repeat,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	CORO7-PAM16	HGNC	ENSG00000103426				96	0	0	56	18	24.3243
DECR2	0	genome.wustl.edu	37	16	461554	461554	+	Silent	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	16	461554	461554	C	T	SNP	DECR2	ENST00000219481	human	ensembl	74_37	+1	known	silent	c.855	p.F285	0.000	NULL	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,smart_PKS/FAS_KR,prints_Glc/ribitol_DH,prints_DHB_DH,prints_DH_sc/Rdtase_SDR	-	no_errors	DECR2	HGNC	ENSG00000242612				110	1	0.900901	52	44	45.8333
NOD2	0	genome.wustl.edu	37	16	50744556	50744556	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	16	50744556	50744556	C	T	SNP	NOD2	ENST00000300589	human	ensembl	74_37	+1	known	missense	c.734	p.T245M	0.998	NULL	pfam_CARD,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_CARD	-	no_errors	NOD2	HGNC	ENSG00000167207				85	0	0	49	30	37.9747
FAM86A	0	genome.wustl.edu	37	16	5141894	5141894	+	Silent	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	16	5141894	5141894	G	A	SNP	FAM86A	ENST00000427587	human	ensembl	74_37	-1	known	silent	c.243	p.H81	0.949	NULL	pfam_Nicotinamide_N-MeTfrase-like	-	no_errors	FAM86A	HGNC	ENSG00000118894				52	0	0	34	12	26.087
CES5A	0	genome.wustl.edu	37	16	55893467	55893467	+	Silent	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	16	55893467	55893467	G	A	SNP	CES5A	ENST00000521992	human	ensembl	74_37	-1	known	silent	c.1135	p.L379	0.464	pfam_CarbesteraseB	pfam_CarbesteraseB,pfam_AB_hydrolase_3	-	no_errors	CES5A	HGNC	ENSG00000159398				53	0	0	28	16	36.3636
GPR56	0	genome.wustl.edu	37	16	57689865	57689865	+	Silent	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	16	57689865	57689865	G	A	SNP	GPR56	ENST00000379696	human	ensembl	74_37	+1	known	silent	c.978	p.T326	0.005	prints_GPCR_2_orphan_rcpt_GPR56	pfam_GPCR_2_secretin-like,pfam_GPS_dom,smart_GPS_dom,prints_GPCR_2_orphan_rcpt_GPR56,prints_GPCR_2_secretin-like,pfscan_GPS_dom,pfscan_GPCR_2-like	-	no_errors	GPR56	HGNC	ENSG00000205336				239	0	0	189	36	16
ZNF319	0	genome.wustl.edu	37	16	58031166	58031166	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	16	58031166	58031166	C	T	SNP	ZNF319	ENST00000299237	human	ensembl	74_37	-1	known	missense	c.1004	p.R335H	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF319	HGNC	ENSG00000166188				59	0	0	29	11	27.5
ZNF319	0	genome.wustl.edu	37	16	58031252	58031252	+	Silent	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	16	58031252	58031252	C	T	SNP	ZNF319	ENST00000299237	human	ensembl	74_37	-1	known	silent	c.918	p.P306	0.175	pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF319	HGNC	ENSG00000166188				59	0	0	32	17	34.6939
DYNC1LI2	0	genome.wustl.edu	37	16	66776563	66776563	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	16	66776563	66776563	G	A	SNP	DYNC1LI2	ENST00000258198	human	ensembl	74_37	-1	known	missense	c.307	p.R103C	1.000	pfam_Dynein_light_int_chain,superfamily_P-loop_NTPase	pfam_Dynein_light_int_chain,superfamily_P-loop_NTPase	-	no_errors	DYNC1LI2	HGNC	ENSG00000135720				71	0	0	33	20	37.7358
CES2	0	genome.wustl.edu	37	16	66974560	66974560	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	16	66974560	66974560	C	T	SNP	CES2	ENST00000317091	human	ensembl	74_37	+1	known	missense	c.970	p.P324S	0.036	pfam_CarbesteraseB	pfam_CarbesteraseB,pfam_AB_hydrolase_3	-	no_errors	CES2	HGNC	ENSG00000172831				102	0	0	100	13	11.5044
CES4A	0	genome.wustl.edu	37	16	67037211	67037211	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	16	67037211	67037211	A	T	SNP	CES4A	ENST00000326686	human	ensembl	74_37	+1	known	missense	c.848	p.N283I	0.041	pfam_CarbesteraseB	pfam_CarbesteraseB,pfam_AB_hydrolase_3	-	no_errors	CES4A	HGNC	ENSG00000172824				117	0	0	80	9	10.1124
PLEKHG4	0	genome.wustl.edu	37	16	67320703	67320703	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	16	67320703	67320703	C	T	SNP	PLEKHG4	ENST00000360461	human	ensembl	74_37	+1	known	missense	c.2806	p.R936C	0.651	smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_DH-domain,superfamily_DH-domain,superfamily_CRAL-TRIO_dom,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PLEKHG4	HGNC	ENSG00000196155				119	0	0	70	16	18.6047
DDX28	0	genome.wustl.edu	37	16	68056553	68056553	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	16	68056553	68056553	G	A	SNP	DDX28	ENST00000332395	human	ensembl	74_37	-1	known	missense	c.553	p.P185S	0.997	pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX28	HGNC	ENSG00000182810				76	0	0	69	8	10.3896
DUS2	0	genome.wustl.edu	37	16	68104958	68104958	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	16	68104958	68104958	C	T	SNP	DUS2	ENST00000358896	human	ensembl	74_37	+1	known	missense	c.757	p.L253F	1.000	pfam_tRNA_hU_synthase	pfam_tRNA_hU_synthase,pfam_dsRNA-bd_dom,smart_dsRNA-bd_dom	-	no_errors	DUS2	HGNC	ENSG00000167264				145	0	0	119	15	11.194
SLC7A6	0	genome.wustl.edu	37	16	68321694	68321694	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	16	68321694	68321694	G	A	SNP	SLC7A6	ENST00000219343	human	ensembl	74_37	+1	known	missense	c.569	p.R190H	1.000	pfam_AA-permease/SLC12A_dom,pirsf_AA/rel_permease1	pfam_AA-permease/SLC12A_dom,pirsf_AA/rel_permease1	-	no_errors	SLC7A6	HGNC	ENSG00000103064				152	0	0	98	43	30.4965
WFIKKN1	0	genome.wustl.edu	37	16	683373	683373	+	Silent	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	16	683373	683373	G	A	SNP	WFIKKN1	ENST00000319070	human	ensembl	74_37	+1	known	silent	c.963	p.P321	0.000	pfam_Prot_inh_Kunz-m,superfamily_Prot_inh_Kunz-m,smart_Prot_inh_Kunz-m,pfscan_Prot_inh_Kunz-m	pfam_Prot_inh_Kunz-m,pfam_Ig_I-set,pfam_Ig_V-set,pfam_WAP-type_4-diS_core,pfam_Kazal_dom,pfam_Immunoglobulin,pfam_Netrin_module_non-TIMP,superfamily_TIMP-like_OB-fold,superfamily_Prot_inh_Kunz-m,superfamily_WAP-type_4-diS_core,smart_WAP-type_4-diS_core,smart_Ig_sub,smart_Ig_sub2,smart_Prot_inh_Kunz-m,pfscan_Netrin_domain,pfscan_Prot_inh_Kunz-m,pfscan_Ig-like_dom,prints_Prot_inh_Kunz-m	-	no_errors	WFIKKN1	HGNC	ENSG00000127578				22	0	0	13	9	40.9091
DDX19B	0	genome.wustl.edu	37	16	70363861	70363861	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	16	70363861	70363861	G	A	SNP	DDX19B	ENST00000288071	human	ensembl	74_37	+1	known	missense	c.913	p.D305N	1.000	superfamily_P-loop_NTPase,smart_Helicase_ATP-bd	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX19B	HGNC	ENSG00000157349				229	0	0	197	45	18.595
CMTR2	0	genome.wustl.edu	37	16	71317774	71317774	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	16	71317774	71317774	C	T	SNP	CMTR2	ENST00000338099	human	ensembl	74_37	-1	known	missense	c.2050	p.A684T	1.000	NULL	pfam_rRNA_MeTrfase_FtsJ_dom	-	no_errors	CMTR2	HGNC	ENSG00000180917				155	0	0	110	19	14.7287
ZNF821	0	genome.wustl.edu	37	16	71894461	71894461	+	Silent	SNP	T	T	C			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	16	71894461	71894461	T	C	SNP	ZNF821	ENST00000425432	human	ensembl	74_37	-1	known	silent	c.699	p.G233	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF821	HGNC	ENSG00000102984				187	0	0	106	50	32.0513
ZFHX3	0	genome.wustl.edu	37	16	72822157	72822157	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	16	72822157	72822157	C	A	SNP	ZFHX3	ENST00000268489	human	ensembl	74_37	-1	known	missense	c.10018	p.G3340C	1.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Znf_C2H2-like,smart_Znf_U1,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	ZFHX3	HGNC	ENSG00000140836				104	0	0	53	27	33.75
HSDL1	0	genome.wustl.edu	37	16	84163662	84163662	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	16	84163662	84163662	C	T	SNP	HSDL1	ENST00000219439	human	ensembl	74_37	-1	known	missense	c.595	p.A199T	0.990	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,prints_Glc/ribitol_DH,prints_DH_sc/Rdtase_SDR	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,prints_Glc/ribitol_DH,prints_DH_sc/Rdtase_SDR	-	no_errors	HSDL1	HGNC	ENSG00000103160				160	1	0.621118	171	9	5
ZFPM1	0	genome.wustl.edu	37	16	88599110	88599110	+	Silent	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	16	88599110	88599110	G	A	SNP	ZFPM1	ENST00000319555	human	ensembl	74_37	+1	known	silent	c.1035	p.T345	0.175	pfscan_Znf_C2H2	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZFPM1	HGNC	ENSG00000179588				45	0	0	33	6	15.3846
ANKRD11	0	genome.wustl.edu	37	16	89349001	89349001	+	Silent	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	16	89349001	89349001	G	A	SNP	ANKRD11	ENST00000301030	human	ensembl	74_37	-1	known	silent	c.3949	p.L1317	0.734	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD11	HGNC	ENSG00000167522				104	0	0	82	14	14.5833
ANKRD11	0	genome.wustl.edu	37	16	89351106	89351106	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	16	89351106	89351106	G	A	SNP	ANKRD11	ENST00000301030	human	ensembl	74_37	-1	known	missense	c.1844	p.A615V	0.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD11	HGNC	ENSG00000167522				165	0	0	130	16	10.9589
ANKRD11	0	genome.wustl.edu	37	16	89352509	89352509	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	16	89352509	89352509	G	A	SNP	ANKRD11	ENST00000301030	human	ensembl	74_37	-1	known	missense	c.830	p.P277L	0.999	superfamily_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD11	HGNC	ENSG00000167522				365	0	0	215	122	36.2018
SPATA2L	0	genome.wustl.edu	37	16	89763857	89763857	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	16	89763857	89763857	G	A	SNP	SPATA2L	ENST00000289805	human	ensembl	74_37	-1	known	missense	c.1160	p.A387V	0.012	NULL	NULL	-	no_errors	SPATA2L	HGNC	ENSG00000158792				46	0	0	30	16	34.7826
VPS9D1	0	genome.wustl.edu	37	16	89777784	89777784	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	16	89777784	89777784	T	C	SNP	VPS9D1	ENST00000389386	human	ensembl	74_37	-1	known	missense	c.784	p.N262D	1.000	NULL	pfam_VPS9,smart_VPS9_subgr,pfscan_VPS9	-	no_errors	VPS9D1	HGNC	ENSG00000075399				34	0	0	17	4	19.0476
TCF25	0	genome.wustl.edu	37	16	89970558	89970558	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	16	89970558	89970558	C	T	SNP	TCF25	ENST00000263346	human	ensembl	74_37	+1	known	missense	c.1414	p.R472W	1.000	pfam_TCF25	pfam_TCF25	-	no_errors	TCF25	HGNC	ENSG00000141002				30	0	0	6	7	53.8462
TUBB3	0	genome.wustl.edu	37	16	90001975	90001975	+	Silent	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	16	90001975	90001975	G	A	SNP	TUBB3	ENST00000315491	human	ensembl	74_37	+1	known	silent	c.1116	p.T372	1.000	pfam_Tubulin/FtsZ_2-layer-sand-dom,superfamily_Tub_FtsZ_C,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Tubulin	pfam_Tubulin_FtsZ_GTPase,pfam_Tubulin/FtsZ_2-layer-sand-dom,pfam_Misato_II_tubulin-like,superfamily_Tubulin_FtsZ_GTPase,superfamily_Tub_FtsZ_C,smart_Tubulin_FtsZ_GTPase,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Beta_tubulin,prints_Tubulin,prints_Epsilon_tubulin,prints_Gamma_tubulin,prints_Delta_tubulin,prints_Alpha_tubulin	-	no_errors	TUBB3	Uniprot_gn	ENSG00000258947				355	0	0	256	61	19.2429
MYH13	0	genome.wustl.edu	37	17	10248525	10248525	+	Silent	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	17	10248525	10248525	G	A	SNP	MYH13	ENST00000252172	human	ensembl	74_37	-1	known	silent	c.1578	p.I526	0.959	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom,prints_Myosin_head_motor_dom	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH13	HGNC	ENSG00000006788				173	0	0	114	23	16.7883
DNAH9	0	genome.wustl.edu	37	17	11775045	11775045	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	17	11775045	11775045	A	G	SNP	DNAH9	ENST00000262442	human	ensembl	74_37	+1	known	missense	c.10184	p.K3395R	0.869	superfamily_P-loop_NTPase	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH9	HGNC	ENSG00000007174				287	0	0	134	47	25.9669
MYOCD	0	genome.wustl.edu	37	17	12639605	12639605	+	Silent	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	17	12639605	12639605	C	T	SNP	MYOCD	ENST00000425538	human	ensembl	74_37	+1	known	silent	c.543	p.D181	0.218	NULL	pfam_RPEL_repeat,pfam_SAP_dom,smart_RPEL_repeat,smart_SAP_dom,pfscan_RPEL_repeat,pfscan_SAP_dom	-	no_errors	MYOCD	HGNC	ENSG00000141052				314	1	0.31746	206	39	15.9184
SLC43A2	0	genome.wustl.edu	37	17	1520045	1520045	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	17	1520045	1520045	G	A	SNP	SLC43A2	ENST00000382147	human	ensembl	74_37	-1	known	missense	c.179	p.T60I	0.819	superfamily_MFS_dom_general_subst_transpt	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	-	no_errors	SLC43A2	HGNC	ENSG00000167703				111	0	0	59	17	22.3684
TVP23C	0	genome.wustl.edu	37	17	15441469	15441469	+	Splice_Site	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	17	15441469	15441469	C	T	SNP	TVP23C	ENST00000523573	human	ensembl	74_37	-1	known	splice_site	c.162-2	e5-2	0.998	-	-	-	no_errors	TVP23C	HGNC	ENSG00000175106				152	0	0	100	27	21.2598
PRPF8	0	genome.wustl.edu	37	17	1584919	1584919	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	17	1584919	1584919	C	T	SNP	PRPF8	ENST00000304992	human	ensembl	74_37	-1	known	missense	c.719	p.R240H	1.000	NULL	pfam_PROCN,pfam_PRP8_domainIV,pfam_Prp8_U6-snRNA-bd,pfam_PRO8NT,pfam_Prp8_U5-snRNA-bd,pfam_PROCT,pfam_RRM_spliceosomal_PrP8,pfam_JAB_MPN_dom,superfamily_Cupredoxin,superfamily_Histone-fold,smart_JAB_MPN_dom	-	no_errors	PRPF8	HGNC	ENSG00000174231				309	0	0	182	35	16.129
ZSWIM7	0	genome.wustl.edu	37	17	15881245	15881245	+	RNA	SNP	A	A	G			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	17	15881245	15881245	A	G	SNP	ZSWIM7	ENST00000399280	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	ZSWIM7	HGNC	ENSG00000214941				21	0	0	17	7	29.1667
NCOR1	0	genome.wustl.edu	37	17	15935741	15935741	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	17	15935741	15935741	G	A	SNP	NCOR1	ENST00000268712	human	ensembl	74_37	-1	known	missense	c.7192	p.P2398S	1.000	NULL	pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	NCOR1	HGNC	ENSG00000141027				164	0	0	89	29	24.5763
RAI1	0	genome.wustl.edu	37	17	17698291	17698291	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	17	17698291	17698291	G	T	SNP	RAI1	ENST00000353383	human	ensembl	74_37	+1	known	missense	c.2029	p.G677C	0.001	NULL	smart_Znf_PHD	-	no_errors	RAI1	HGNC	ENSG00000108557				114	0	0	67	19	22.093
FBXW10	0	genome.wustl.edu	37	17	18647574	18647574	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	17	18647574	18647574	C	T	SNP	FBXW10	ENST00000308799	human	ensembl	74_37	+1	known	missense	c.17	p.S6L	0.031	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_F-box_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	FBXW10	HGNC	ENSG00000171931				224	0	0	143	53	27.0408
FBXW10	0	genome.wustl.edu	37	17	18653318	18653318	+	Silent	SNP	T	T	C			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	17	18653318	18653318	T	C	SNP	FBXW10	ENST00000308799	human	ensembl	74_37	+1	known	silent	c.954	p.F318	0.005	superfamily_F-box_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_F-box_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	FBXW10	HGNC	ENSG00000171931				166	0	0	107	21	16.4062
USP22	0	genome.wustl.edu	37	17	20910276	20910276	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	17	20910276	20910276	G	A	SNP	USP22	ENST00000261497	human	ensembl	74_37	-1	known	missense	c.1255	p.R419W	1.000	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	pfam_Peptidase_C19/C67,pfam_Znf_UBP,pfscan_Znf_UBP,pfscan_Peptidase_C19/C67	-	no_errors	USP22	HGNC	ENSG00000124422				22	0	0	13	4	23.5294
SMG6	0	genome.wustl.edu	37	17	2203910	2203910	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	17	2203910	2203910	C	T	SNP	SMG6	ENST00000263073	human	ensembl	74_37	-1	known	missense	c.137	p.R46H	1.000	NULL	pfam_EST1,smart_PIN_dom	-	no_errors	SMG6	HGNC	ENSG00000070366				176	0	0	113	26	18.705
KIAA0100	0	genome.wustl.edu	37	17	26960768	26960768	+	Silent	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	17	26960768	26960768	C	T	SNP	KIAA0100	ENST00000528896	human	ensembl	74_37	-1	known	silent	c.3264	p.S1088	0.998	pfam_FMP27_GFWDK_dom	pfam_FMP27_C,pfam_FMP27_N,pfam_FMP27_GFWDK_dom	-	no_errors	KIAA0100	HGNC	ENSG00000007202				52	0	0	26	10	27.7778
SUPT6H	0	genome.wustl.edu	37	17	27013675	27013675	+	Silent	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	17	27013675	27013675	C	T	SNP	SUPT6H	ENST00000314616	human	ensembl	74_37	+1	known	silent	c.2568	p.D856	1.000	smart_YqgF/RNaseH-like_dom,pirsf_TF_Spt6	pfam_Rbsml_prot_S1_RNA-bd_dom,pfam_SH2,superfamily_NA-bd_OB-fold,smart_YqgF/RNaseH-like_dom,smart_RNA-binding_domain_S1,smart_SH2,pirsf_TF_Spt6,pfscan_SH2,pfscan_Rbsml_prot_S1_RNA-bd_dom	-	no_errors	SUPT6H	HGNC	ENSG00000109111				163	0	0	122	27	18.1208
FAM222B	0	genome.wustl.edu	37	17	27086113	27086113	+	Nonsense_Mutation	SNP	A	A	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	17	27086113	27086113	A	T	SNP	FAM222B	ENST00000341217	human	ensembl	74_37	-1	known	nonsense	c.864	p.C288*	1.000	NULL	NULL	-	no_errors	FAM222B	HGNC	ENSG00000173065				20	0	0	16	9	36
SUZ12	0	genome.wustl.edu	37	17	30310094	30310094	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	17	30310094	30310094	G	A	SNP	SUZ12	ENST00000322652	human	ensembl	74_37	+1	known	missense	c.994	p.A332T	1.000	NULL	pfam_Polycomb_protein_VEFS-Box	-	no_errors	SUZ12	HGNC	ENSG00000178691				185	0	0	119	15	11.194
RHBDL3	0	genome.wustl.edu	37	17	30616026	30616026	+	Silent	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	17	30616026	30616026	G	A	SNP	RHBDL3	ENST00000269051	human	ensembl	74_37	+1	known	silent	c.510	p.T170	0.070	pirsf_Peptidase_S54_rhomboid_met	pfam_Peptidase_S54_rhomboid_dom,pirsf_Peptidase_S54_rhomboid_met,pfscan_EF_hand_dom	-	no_errors	RHBDL3	HGNC	ENSG00000141314				79	0	0	50	15	23.0769
ASIC2	0	genome.wustl.edu	37	17	31618468	31618468	+	Silent	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	17	31618468	31618468	G	A	SNP	ASIC2	ENST00000225823	human	ensembl	74_37	-1	known	silent	c.666	p.C222	1.000	pfam_Na+channel_ASC,tigrfam_EnaC	pfam_Na+channel_ASC,prints_Na+channel_ASC,tigrfam_EnaC	-	no_errors	ASIC2	HGNC	ENSG00000108684				75	0	0	42	18	30
TMEM132E	0	genome.wustl.edu	37	17	32963111	32963111	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	17	32963111	32963111	C	T	SNP	TMEM132E	ENST00000321639	human	ensembl	74_37	+1	known	missense	c.1793	p.A598V	1.000	NULL	NULL	-	no_errors	TMEM132E	HGNC	ENSG00000181291				42	0	0	20	4	16.6667
SLFN5	0	genome.wustl.edu	37	17	33585942	33585942	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	17	33585942	33585942	T	C	SNP	SLFN5	ENST00000299977	human	ensembl	74_37	+1	known	missense	c.233	p.V78A	0.002	NULL	pfam_ATPase_AAA-4,pfam_DUF2075,superfamily_P-loop_NTPase	-	no_errors	SLFN5	HGNC	ENSG00000166750				198	0	0	132	30	18.5185
ACACA	0	genome.wustl.edu	37	17	35470033	35470033	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	17	35470033	35470033	G	A	SNP	ACACA	ENST00000353139	human	ensembl	74_37	-1	known	nonsense	c.6442	p.R2148*	1.000	pfam_Carboxyl_trans,pfscan_COA_CT_C	pfam_AcCoA_COase_cen,pfam_Carboxyl_trans,pfam_CbamoylP_synth_lsu-like_ATP-bd,pfam_CarbamoylP_synth_lsu_N,pfam_Biotin_COase_C,pfam_Biotin_lipoyl,pfam_Dala_Dala_lig_C,pfam_ATP-grasp_carboxylate-amine,superfamily_PreATP-grasp_dom,superfamily_Rudment_hybrid_motif,superfamily_Single_hybrid_motif,smart_Biotin_COase_C,pfscan_ATP-grasp,pfscan_Biotin_carboxylation_dom,pfscan_COA_CT_N,pfscan_COA_CT_C,pfscan_Biotin_lipoyl	-	no_errors	ACACA	HGNC	ENSG00000132142				86	0	0	43	22	33.8462
GRB7	0	genome.wustl.edu	37	17	37900851	37900851	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	17	37900851	37900851	G	A	SNP	GRB7	ENST00000445327	human	ensembl	74_37	+1	known	missense	c.916	p.V306M	0.958	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_BPS-dom,pfam_SH2,pfam_Ras-assoc,pfam_Pleckstrin_homology,smart_Ras-assoc,smart_Pleckstrin_homology,smart_SH2,pfscan_Pleckstrin_homology,pfscan_Ras-assoc,pfscan_SH2,prints_SH2	-	no_errors	GRB7	HGNC	ENSG00000141738				29	0	0	26	4	13.3333
IKZF3	0	genome.wustl.edu	37	17	37947745	37947745	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	17	37947745	37947745	T	G	SNP	IKZF3	ENST00000346872	human	ensembl	74_37	-1	known	missense	c.516	p.K172N	1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	IKZF3	HGNC	ENSG00000161405				245	1	0.406504	150	43	22.2798
KRT31	0	genome.wustl.edu	37	17	39551538	39551538	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	17	39551538	39551538	C	T	SNP	KRT31	ENST00000251645	human	ensembl	74_37	-1	known	missense	c.835	p.V279I	0.759	pfam_IF,superfamily_Prefoldin	pfam_IF,superfamily_Prefoldin,prints_Keratin_I	-	no_errors	KRT31	HGNC	ENSG00000094796				174	0	0	120	30	20
DNAJC7	0	genome.wustl.edu	37	17	40134291	40134291	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	17	40134291	40134291	C	T	SNP	DNAJC7	ENST00000457167	human	ensembl	74_37	-1	known	missense	c.1213	p.A405T	1.000	pfam_DnaJ_domain,superfamily_DnaJ_domain,smart_DnaJ_domain,pfscan_DnaJ_domain,prints_DnaJ_domain	pfam_TPR_1,pfam_TPR_2,pfam_DnaJ_domain,superfamily_DnaJ_domain,smart_TPR_repeat,smart_DnaJ_domain,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_DnaJ_domain,prints_DnaJ_domain	-	no_errors	DNAJC7	HGNC	ENSG00000168259				75	0	0	44	11	20
ZZEF1	0	genome.wustl.edu	37	17	4020386	4020386	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	17	4020386	4020386	G	A	SNP	ZZEF1	ENST00000381638	human	ensembl	74_37	-1	known	missense	c.574	p.R192C	1.000	NULL	pfam_Znf_ZZ,pfam_APC_su10/DOC_dom,superfamily_Galactose-bd-like,superfamily_CUB_dom,smart_EF_hand_dom,smart_Znf_ZZ,pfscan_EF_hand_dom,pfscan_Znf_ZZ	-	no_errors	ZZEF1	HGNC	ENSG00000074755				228	0	0	138	52	27.3684
AOC3	0	genome.wustl.edu	37	17	41004637	41004637	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	17	41004637	41004637	G	A	SNP	AOC3	ENST00000308423	human	ensembl	74_37	+1	known	missense	c.1277	p.R426H	0.000	pfam_Cu_amine_oxidase_C,superfamily_Cu_amine_oxidase_C	pfam_Cu_amine_oxidase_C,pfam_Cu_amine_oxidase_N2,pfam_Cu_amine_oxidase_N3,superfamily_Cu_amine_oxidase_C,superfamily_Cu_amine_oxidase_N-reg,prints_Cu_amine_oxidase	-	no_errors	AOC3	HGNC	ENSG00000131471				117	0	0	70	25	26.3158
TMEM101	0	genome.wustl.edu	37	17	42090431	42090431	+	Silent	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	17	42090431	42090431	G	A	SNP	TMEM101	ENST00000206380	human	ensembl	74_37	-1	known	silent	c.411	p.S137	1.000	NULL	NULL	-	no_errors	TMEM101	HGNC	ENSG00000091947				54	0	0	47	8	14.5455
FZD2	0	genome.wustl.edu	37	17	42635524	42635524	+	Silent	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	17	42635524	42635524	C	T	SNP	FZD2	ENST00000315323	human	ensembl	74_37	+1	known	silent	c.468	p.S156	0.196	superfamily_Frizzled_dom	pfam_Frizzled,pfam_Frizzled_dom,superfamily_Frizzled_dom,smart_Frizzled_dom,pfscan_Frizzled_dom,pfscan_GPCR_2-like,prints_Frizzled	-	no_errors	FZD2	HGNC	ENSG00000180340				55	0	0	36	8	18.1818
GFAP	0	genome.wustl.edu	37	17	42987609	42987609	+	Silent	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	17	42987609	42987609	G	A	SNP	GFAP	ENST00000435360	human	ensembl	74_37	-1	known	silent	c.1191	p.D397	1.000	NULL	pfam_IF	-	no_errors	GFAP	HGNC	ENSG00000131095				257	0	0	176	35	16.5877
C1QL1	0	genome.wustl.edu	37	17	43044868	43044868	+	Silent	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	17	43044868	43044868	G	A	SNP	C1QL1	ENST00000253407	human	ensembl	74_37	-1	known	silent	c.549	p.R183	1.000	pfam_C1q,superfamily_Tumour_necrosis_fac-like_dom,smart_C1q,pfscan_C1q,prints_C1q	pfam_C1q,pfam_Collagen,superfamily_Tumour_necrosis_fac-like_dom,smart_C1q,pfscan_C1q,prints_C1q	-	no_errors	C1QL1	HGNC	ENSG00000131094				82	0	0	40	9	18.3673
PLCD3	0	genome.wustl.edu	37	17	43195441	43195441	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	17	43195441	43195441	C	T	SNP	PLCD3	ENST00000322765	human	ensembl	74_37	-1	known	missense	c.1180	p.V394I	0.289	pfam_PLipase_C_PInositol-sp_X_dom,superfamily_PLC-like_Pdiesterase_TIM-brl,smart_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_PInositol-sp_X_dom	pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,pfam_C2_dom,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_dom,smart_Pleckstrin_homology,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_dom,pfscan_C2_dom,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y,prints_Pinositol_PLipase_C	-	no_errors	PLCD3	HGNC	ENSG00000161714				41	0	0	19	5	20.8333
TBX21	0	genome.wustl.edu	37	17	45822678	45822678	+	Silent	SNP	T	T	G			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	17	45822678	45822678	T	G	SNP	TBX21	ENST00000177694	human	ensembl	74_37	+1	known	silent	c.1554	p.P518	0.142	NULL	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box,prints_TF_T-box	-	no_errors	TBX21	HGNC	ENSG00000073861				99	0	0	69	11	13.75
HOXB3	0	genome.wustl.edu	37	17	46629792	46629792	+	Silent	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	17	46629792	46629792	G	A	SNP	HOXB3	ENST00000311626	human	ensembl	74_37	-1	known	silent	c.45	p.F15	1.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa	-	no_errors	HOXB3	HGNC	ENSG00000120093				78	0	0	42	11	20.7547
IGF2BP1	0	genome.wustl.edu	37	17	47118830	47118830	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	17	47118830	47118830	G	T	SNP	IGF2BP1	ENST00000290341	human	ensembl	74_37	+1	known	missense	c.909	p.E303D	1.000	pfam_KH_dom_type_1,smart_KH_dom,pfscan_KH_dom_type_1	pfam_KH_dom_type_1,pfam_RRM_dom,smart_RRM_dom,smart_KH_dom,pfscan_KH_dom_type_1,pfscan_RRM_dom	-	no_errors	IGF2BP1	HGNC	ENSG00000159217				102	0	0	67	16	19.2771
B4GALNT2	0	genome.wustl.edu	37	17	47236551	47236551	+	Silent	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	17	47236551	47236551	G	A	SNP	B4GALNT2	ENST00000300404	human	ensembl	74_37	+1	known	silent	c.831	p.T277	0.004	pirsf_GM2_synthase	pfam_Glyco_trans_2,pirsf_GM2_synthase	-	no_errors	B4GALNT2	HGNC	ENSG00000167080				347	0	0	209	55	20.8333
SPAG7	0	genome.wustl.edu	37	17	4862892	4862892	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	17	4862892	4862892	C	T	SNP	SPAG7	ENST00000206020	human	ensembl	74_37	-1	known	missense	c.621	p.M207I	1.000	pirsf_Sperm-assoc_antigen_PAG7	pfam_R3H_ss-bd,smart_R3H_ss-bd,pirsf_Sperm-assoc_antigen_PAG7,pfscan_R3H_ss-bd	-	no_errors	SPAG7	HGNC	ENSG00000091640				174	1	0.571429	124	30	19.4805
SPAG9	0	genome.wustl.edu	37	17	49057256	49057256	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	17	49057256	49057256	C	A	SNP	SPAG9	ENST00000262013	human	ensembl	74_37	-1	known	missense	c.3260	p.R1087M	1.000	superfamily_WD40_repeat_dom	pfam_JNK/Rab-associated_protein-1_N,superfamily_WD40_repeat_dom	-	no_errors	SPAG9	HGNC	ENSG00000008294				134	0	0	67	15	18.2927
ZFP3	0	genome.wustl.edu	37	17	4995874	4995874	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	17	4995874	4995874	C	T	SNP	ZFP3	ENST00000318833	human	ensembl	74_37	+1	known	missense	c.1075	p.H359Y	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZFP3	HGNC	ENSG00000180787				92	0	0	51	5	8.92857
USP6	0	genome.wustl.edu	37	17	5050419	5050419	+	Silent	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	17	5050419	5050419	C	T	SNP	USP6	ENST00000250066	human	ensembl	74_37	+1	known	silent	c.2361	p.S787	1.000	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	pfam_Peptidase_C19/C67,pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom,pfscan_Peptidase_C19/C67	-	no_errors	USP6	HGNC	ENSG00000129204				239	0	0	129	19	12.8378
PCTP	0	genome.wustl.edu	37	17	53851106	53851106	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	17	53851106	53851106	C	T	SNP	PCTP	ENST00000268896	human	ensembl	74_37	+1	known	nonsense	c.361	p.R121*	0.869	pfam_START_lipid-bd_dom,smart_START_lipid-bd_dom,pfscan_START_lipid-bd_dom	pfam_START_lipid-bd_dom,smart_START_lipid-bd_dom,pfscan_START_lipid-bd_dom	-	no_errors	PCTP	HGNC	ENSG00000141179				57	0	0	28	16	36.3636
TRIM25	0	genome.wustl.edu	37	17	54972887	54972887	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	17	54972887	54972887	A	G	SNP	TRIM25	ENST00000316881	human	ensembl	74_37	-1	known	missense	c.1259	p.L420S	0.000	NULL	pfam_SPRY_rcpt,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl_sf,smart_Znf_RING,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	TRIM25	HGNC	ENSG00000121060				271	0	0	174	48	21.6216
AKAP1	0	genome.wustl.edu	37	17	55191844	55191844	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	17	55191844	55191844	G	A	SNP	AKAP1	ENST00000337714	human	ensembl	74_37	+1	known	missense	c.2128	p.V710M	1.000	pfam_Tudor	pfam_Tudor,pfam_KH_dom_type_1,smart_KH_dom,smart_Tudor,pfscan_Tudor,pfscan_KH_dom_type_1	-	no_errors	AKAP1	HGNC	ENSG00000121057				118	0	0	62	22	26.1905
LPO	0	genome.wustl.edu	37	17	56342193	56342193	+	Silent	SNP	C	C	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	17	56342193	56342193	C	A	SNP	LPO	ENST00000262290	human	ensembl	74_37	+1	known	silent	c.1377	p.V459	1.000	pfam_Haem_peroxidase_animal,superfamily_Haem_peroxidase,pfscan_Haem_peroxidase_animal	pfam_Haem_peroxidase_animal,superfamily_Haem_peroxidase,pfscan_Haem_peroxidase_animal,prints_Haem_peroxidase_animal_subgr	-	no_errors	LPO	HGNC	ENSG00000167419				90	0	0	55	19	25.6757
RNF43	0	genome.wustl.edu	37	17	56435035	56435035	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	17	56435035	56435035	C	T	SNP	RNF43	ENST00000407977	human	ensembl	74_37	-1	known	missense	c.2102	p.C701Y	0.994	NULL	pfam_Znf_C3HC4_RING-type,superfamily_PAS,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF43	HGNC	ENSG00000108375				342	0	0	236	28	10.6061
RNF43	0	genome.wustl.edu	37	17	56435709	56435709	+	Silent	SNP	A	A	G			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	17	56435709	56435709	A	G	SNP	RNF43	ENST00000407977	human	ensembl	74_37	-1	known	silent	c.1428	p.S476	0.999	NULL	pfam_Znf_C3HC4_RING-type,superfamily_PAS,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF43	HGNC	ENSG00000108375				164	0	0	93	25	21.1864
TRIM37	0	genome.wustl.edu	37	17	57134370	57134370	+	Silent	SNP	A	A	G			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	17	57134370	57134370	A	G	SNP	TRIM37	ENST00000262294	human	ensembl	74_37	-1	known	silent	c.1065	p.P355	1.000	pfam_MATH,superfamily_TRAF-like,smart_MATH,pfscan_MATH	pfam_Znf_B-box,pfam_MATH,superfamily_TRAF-like,smart_Znf_B-box,smart_Bbox_C,smart_MATH,pfscan_MATH,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM37	HGNC	ENSG00000108395				106	0	0	80	19	19.1919
TBC1D3P1-DHX40P1	0	genome.wustl.edu	37	17	58092196	58092196	+	RNA	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	17	58092196	58092196	C	T	SNP	TBC1D3P1-DHX40P1	ENST00000407042	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.994	-	-	-	no_errors	TBC1D3P1-DHX40P1	HGNC	ENSG00000267104				74	0	0	62	18	22.5
USP32	0	genome.wustl.edu	37	17	58288786	58288786	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	17	58288786	58288786	G	A	SNP	USP32	ENST00000300896	human	ensembl	74_37	-1	known	missense	c.2269	p.P757S	1.000	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	pfam_Peptidase_C19/C67,pfam_Pept_C19_DUSP,smart_EF_hand_dom,smart_Pept_C19_DUSP,pfscan_EF_hand_dom,pfscan_Peptidase_C19/C67,prints_Recoverin	-	no_errors	USP32	HGNC	ENSG00000170832				237	0	0	132	35	20.9581
DCAF7	0	genome.wustl.edu	37	17	61657271	61657271	+	Silent	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	17	61657271	61657271	C	T	SNP	DCAF7	ENST00000310827	human	ensembl	74_37	+1	known	silent	c.495	p.H165	0.994	superfamily_WD40_repeat_dom,smart_WD40_repeat	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DCAF7	HGNC	ENSG00000136485				55	0	0	54	8	12.9032
CSHL1	0	genome.wustl.edu	37	17	61988105	61988105	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	17	61988105	61988105	C	A	SNP	CSHL1	ENST00000309894	human	ensembl	74_37	-1	known	nonsense	c.190	p.E64*	0.099	pfam_Somatotropin,superfamily_4_helix_cytokine-like_core	pfam_Somatotropin,superfamily_4_helix_cytokine-like_core,prints_Somatotropin	-	no_errors	CSHL1	HGNC	ENSG00000204414				380	2	0.52356	234	61	20.678
POLG2	0	genome.wustl.edu	37	17	62481916	62481916	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	17	62481916	62481916	G	T	SNP	POLG2	ENST00000539111	human	ensembl	74_37	-1	known	missense	c.1039	p.L347M	0.991	NULL	pfam_Anticodon-bd,superfamily_Anticodon-bd	-	no_errors	POLG2	HGNC	ENSG00000256525				118	0	0	74	15	16.8539
LOC146880	0	genome.wustl.edu	37	17	62758055	62758055	+	RNA	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	17	62758055	62758055	C	T	SNP	LOC146880	ENST00000400873	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	hsa-mir-6080	miRBase	ENSG00000215769				190	0	0	118	14	10.6061
LRRC37A3	0	genome.wustl.edu	37	17	62856577	62856577	+	Silent	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	17	62856577	62856577	G	A	SNP	LRRC37A3	ENST00000319651	human	ensembl	74_37	-1	known	silent	c.3687	p.N1229	0.001	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC37A3	HGNC	ENSG00000176809				183	0	0	109	32	22.695
BPTF	0	genome.wustl.edu	37	17	65850305	65850305	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	17	65850305	65850305	T	C	SNP	BPTF	ENST00000321892	human	ensembl	74_37	+1	known	missense	c.863	p.V288A	0.982	pfam_DDT_dom,smart_DDT_dom_subgr,pfscan_DDT_dom_superfamily	pfam_Bromodomain,pfam_DDT_dom,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_DDT_dom_subgr,smart_Znf_PHD,smart_Bromodomain,pfscan_Znf_PHD-finger,pfscan_DDT_dom_superfamily,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BPTF	HGNC	ENSG00000171634				237	0	0	172	49	22.1719
CDC42EP4	0	genome.wustl.edu	37	17	71282556	71282556	+	Silent	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	17	71282556	71282556	G	A	SNP	CDC42EP4	ENST00000335793	human	ensembl	74_37	-1	known	silent	c.84	p.S28	1.000	pfam_CRIB_dom,smart_CRIB_dom,pfscan_CRIB_dom	pfam_CRIB_dom,smart_CRIB_dom,pfscan_CRIB_dom	-	no_errors	CDC42EP4	HGNC	ENSG00000179604				67	0	0	43	10	18.8679
PHF23	0	genome.wustl.edu	37	17	7139893	7139893	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	17	7139893	7139893	C	T	SNP	PHF23	ENST00000320316	human	ensembl	74_37	-1	known	missense	c.353	p.R118H	1.000	NULL	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD	-	no_errors	PHF23	HGNC	ENSG00000040633				262	0	0	186	40	17.6991
PHF23	0	genome.wustl.edu	37	17	7140733	7140733	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	17	7140733	7140733	A	G	SNP	PHF23	ENST00000320316	human	ensembl	74_37	-1	known	missense	c.130	p.Y44H	0.997	NULL	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD	-	no_errors	PHF23	HGNC	ENSG00000040633				283	0	0	147	47	24.2268
GPRC5C	0	genome.wustl.edu	37	17	72436848	72436848	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	17	72436848	72436848	C	A	SNP	GPRC5C	ENST00000392627	human	ensembl	74_37	+1	known	missense	c.1068	p.S356R	0.996	NULL	pfam_GPCR_3_C,pfscan_GPCR_3_C	-	no_errors	GPRC5C	HGNC	ENSG00000170412				86	0	0	52	16	23.5294
OTOP3	0	genome.wustl.edu	37	17	72937882	72937882	+	Silent	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	17	72937882	72937882	C	T	SNP	OTOP3	ENST00000328801	human	ensembl	74_37	+1	known	silent	c.468	p.H156	0.991	NULL	pfam_Otopetrin	-	no_errors	OTOP3	HGNC	ENSG00000182938				52	0	0	45	6	11.7647
OTOP3	0	genome.wustl.edu	37	17	72942905	72942905	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	17	72942905	72942905	G	A	SNP	OTOP3	ENST00000328801	human	ensembl	74_37	+1	known	missense	c.955	p.V319M	0.173	pfam_Otopetrin	pfam_Otopetrin	-	no_errors	OTOP3	HGNC	ENSG00000182938				335	0	0	249	64	20.4473
ST6GALNAC1	0	genome.wustl.edu	37	17	74623163	74623163	+	Silent	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	17	74623163	74623163	G	A	SNP	ST6GALNAC1	ENST00000156626	human	ensembl	74_37	-1	known	silent	c.1158	p.H386	0.930	pfam_Glyco_trans_29	pfam_Glyco_trans_29	-	no_errors	ST6GALNAC1	HGNC	ENSG00000070526				74	0	0	58	7	10.7692
SENP3	0	genome.wustl.edu	37	17	7466947	7466947	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	17	7466947	7466947	G	A	SNP	SENP3	ENST00000429205	human	ensembl	74_37	+1	known	missense	c.554	p.R185H	1.000	NULL	pfam_Peptidase_C48,pfscan_Peptidase_C48	-	no_errors	SENP3	HGNC	ENSG00000161956				26	0	0	13	3	18.75
FXR2	0	genome.wustl.edu	37	17	7496856	7496856	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	17	7496856	7496856	G	A	SNP	FXR2	ENST00000250113	human	ensembl	74_37	-1	known	missense	c.1195	p.R399W	1.000	pfam_Frag_X_MRP_fam	pfam_Frag_X_MRP_fam,pfam_KH_dom_type_1,pfam_Agenet-like_dom,smart_KH_dom,pfscan_KH_dom_type_1	-	no_errors	FXR2	HGNC	ENSG00000129245				12	0	0	11	2	15.3846
PGS1	0	genome.wustl.edu	37	17	76396831	76396831	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	17	76396831	76396831	G	A	SNP	PGS1	ENST00000262764	human	ensembl	74_37	+1	known	missense	c.775	p.A259T	0.999	pirsf_PLipase-D_PtdSer-synthase-type	pirsf_PLipase-D_PtdSer-synthase-type,pfscan_PLipase_D/transphosphatidylase	-	no_errors	PGS1	HGNC	ENSG00000087157				178	0	0	118	23	16.3121
DNAH2	0	genome.wustl.edu	37	17	7644225	7644225	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	17	7644225	7644225	C	A	SNP	DNAH2	ENST00000389173	human	ensembl	74_37	+1	known	missense	c.1604	p.P535Q	0.587	pfam_Dynein_heavy_dom-1	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA_core,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH2	HGNC	ENSG00000183914				189	0	0	122	44	26.506
CYTH1	0	genome.wustl.edu	37	17	76696462	76696462	+	Silent	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	17	76696462	76696462	C	T	SNP	CYTH1	ENST00000361101	human	ensembl	74_37	-1	known	silent	c.501	p.A167	0.046	pfam_Sec7_dom,superfamily_Sec7_dom,smart_Sec7_dom,pfscan_Sec7_dom	pfam_Sec7_dom,pfam_Pleckstrin_homology,superfamily_Sec7_dom,smart_Sec7_dom,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Sec7_dom	-	no_errors	CYTH1	HGNC	ENSG00000108669				35	0	0	12	6	33.3333
GAA	0	genome.wustl.edu	37	17	78086728	78086728	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	17	78086728	78086728	G	A	SNP	GAA	ENST00000302262	human	ensembl	74_37	+1	known	missense	c.1942	p.G648S	0.999	pfam_Glyco_hydro_31,superfamily_Glycoside_hydrolase_SF	pfam_Glyco_hydro_31,pfam_P_trefoil,superfamily_Glycoside_hydrolase_SF,superfamily_Gal_mutarotase_SF_dom,smart_P_trefoil	-	no_errors	GAA	HGNC	ENSG00000171298				23	0	0	14	4	22.2222
SGSH	0	genome.wustl.edu	37	17	78190916	78190916	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	17	78190916	78190916	C	T	SNP	SGSH	ENST00000326317	human	ensembl	74_37	-1	known	missense	c.164	p.R55H	0.992	pfam_Sulfatase,pfam_Phosphodiest/P_Trfase,superfamily_Alkaline_phosphatase_core	pfam_Sulfatase,pfam_Phosphodiest/P_Trfase,superfamily_Alkaline_phosphatase_core	-	no_errors	SGSH	HGNC	ENSG00000181523				25	0	0	11	3	21.4286
SLC26A11	0	genome.wustl.edu	37	17	78195443	78195443	+	Silent	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	17	78195443	78195443	G	A	SNP	SLC26A11	ENST00000361193	human	ensembl	74_37	+1	known	silent	c.84	p.A28	0.000	NULL	pfam_Sulph_transpt,pfam_STAS_dom,superfamily_STAS_dom,pfscan_STAS_dom	-	no_errors	SLC26A11	HGNC	ENSG00000181045				38	0	0	40	12	23.0769
RNF213	0	genome.wustl.edu	37	17	78293112	78293112	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	17	78293112	78293112	G	T	SNP	RNF213	ENST00000582970	human	ensembl	74_37	+1	known	missense	c.3024	p.Q1008H	1.000	NULL	superfamily_P-loop_NTPase,smart_AAA+_ATPase,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF213	HGNC	ENSG00000173821				135	1	0.735294	91	28	23.5294
KCNAB3	0	genome.wustl.edu	37	17	7832579	7832579	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	17	7832579	7832579	G	A	SNP	KCNAB3	ENST00000303790	human	ensembl	74_37	-1	known	missense	c.175	p.P59S	0.906	NULL	pfam_NADP_OxRdtase_dom,superfamily_NADP_OxRdtase_dom,prints_K_chnl_volt-dep_bsu_KCNAB-rel,prints_K_chnl_volt-dep_bsu_KCNAB3,prints_K_chnl_volt-dep_bsu_KCNAB1,tigrfam_K_chnl_volt-dep_bsu_KCNAB	-	no_errors	KCNAB3	HGNC	ENSG00000170049				31	0	0	5	6	54.5455
RNF213	0	genome.wustl.edu	37	17	78337427	78337427	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	17	78337427	78337427	G	A	SNP	RNF213	ENST00000582970	human	ensembl	74_37	+1	known	missense	c.11587	p.A3863T	0.996	superfamily_P-loop_NTPase	superfamily_P-loop_NTPase,smart_AAA+_ATPase,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF213	HGNC	ENSG00000173821				59	0	0	36	7	16.2791
RPTOR	0	genome.wustl.edu	37	17	78882653	78882653	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	17	78882653	78882653	T	C	SNP	RPTOR	ENST00000306801	human	ensembl	74_37	+1	known	missense	c.2444	p.L815P	0.257	superfamily_ARM-type_fold	pfam_HEAT,pfam_WD40_repeat,superfamily_ARM-type_fold,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom,prints_Raptor	-	no_errors	RPTOR	HGNC	ENSG00000141564				492	0	0	315	84	21.0526
STRA13	0	genome.wustl.edu	37	17	79977146	79977146	+	RNA	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	17	79977146	79977146	C	T	SNP	STRA13	ENST00000577379	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	STRA13	HGNC	ENSG00000169689				25	0	0	21	5	19.2308
SLC25A35	0	genome.wustl.edu	37	17	8194159	8194159	+	Splice_Site	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	17	8194159	8194159	C	T	SNP	SLC25A35	ENST00000577745	human	ensembl	74_37	-1	known	splice_site	c.729+1	e4+1	1.000	-	-	-	no_errors	SLC25A35	HGNC	ENSG00000125434				234	0	0	112	39	25.8278
MYH10	0	genome.wustl.edu	37	17	8417117	8417117	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	17	8417117	8417117	C	T	SNP	MYH10	ENST00000396239	human	ensembl	74_37	-1	known	missense	c.2570	p.R857Q	1.000	superfamily_P-loop_NTPase	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,superfamily_Prefoldin,superfamily_HR1_rho-bd,superfamily_UBA-like,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH10	HGNC	ENSG00000133026				107	0	0	74	20	21.2766
PIK3R6	0	genome.wustl.edu	37	17	8731436	8731436	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	17	8731436	8731436	G	A	SNP	PIK3R6	ENST00000311434	human	ensembl	74_37	-1	known	missense	c.1385	p.A462V	0.626	pfam_PI3K_1B_gamma_p101_su	pfam_PI3K_1B_gamma_p101_su	-	no_errors	PIK3R6	HGNC	ENSG00000174083				103	0	0	57	30	34.4828
ENSG00000256616	0	genome.wustl.edu	37	18	12076109	12076109	+	RNA	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	18	12076109	12076109	C	T	SNP	ENSG00000256616	ENST00000591780	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.999	-	-	-	no_errors	RP11-815J4.6	Clone_based_vega_gene	ENSG00000256616				103	0	0	66	15	18.5185
TUBB6	0	genome.wustl.edu	37	18	12308306	12308306	+	Silent	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	18	12308306	12308306	G	A	SNP	TUBB6	ENST00000317702	human	ensembl	74_37	+1	known	silent	c.15	p.V5	0.985	pfam_Tubulin_FtsZ_GTPase,pfam_Misato_II_tubulin-like,superfamily_Tubulin_FtsZ_GTPase	pfam_Tubulin_FtsZ_GTPase,pfam_Tubulin/FtsZ_2-layer-sand-dom,pfam_Misato_II_tubulin-like,superfamily_Tubulin_FtsZ_GTPase,superfamily_Tub_FtsZ_C,smart_Tubulin_FtsZ_GTPase,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Beta_tubulin,prints_Tubulin,prints_Epsilon_tubulin,prints_Delta_tubulin,prints_Gamma_tubulin,prints_Alpha_tubulin	-	no_errors	TUBB6	HGNC	ENSG00000176014				16	0	0	15	7	31.8182
MC2R	0	genome.wustl.edu	37	18	13885348	13885348	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	18	13885348	13885348	G	A	SNP	MC2R	ENST00000327606	human	ensembl	74_37	-1	known	missense	c.170	p.A57V	0.998	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_Melcrt_ACTH_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_ACTH_rcpt,prints_Melcrt_ACTH_rcpt,prints_GPCR_Rhodpsn	-	no_errors	MC2R	HGNC	ENSG00000185231				99	0	0	67	24	26.3736
USP14	0	genome.wustl.edu	37	18	211247	211247	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	18	211247	211247	G	A	SNP	USP14	ENST00000261601	human	ensembl	74_37	+1	known	missense	c.1448	p.R483H	1.000	pfscan_Peptidase_C19/C67	pfam_Peptidase_C19/C67,smart_Ubiquitin_dom,pfscan_Peptidase_C19/C67,pfscan_Ubiquitin_supergroup	-	no_errors	USP14	HGNC	ENSG00000101557				139	0	0	82	20	19.6078
OSBPL1A	0	genome.wustl.edu	37	18	21913010	21913010	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	18	21913010	21913010	T	C	SNP	OSBPL1A	ENST00000319481	human	ensembl	74_37	-1	known	missense	c.521	p.Q174R	0.996	superfamily_Ankyrin_rpt-contain_dom,pfscan_Ankyrin_rpt-contain_dom	pfam_Oxysterol-bd,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Pleckstrin_homology,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Pleckstrin_homology,prints_Ankyrin_rpt	-	no_errors	OSBPL1A	HGNC	ENSG00000141447				153	0	0	109	26	19.2593
ZNF521	0	genome.wustl.edu	37	18	22805411	22805411	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	18	22805411	22805411	A	G	SNP	ZNF521	ENST00000361524	human	ensembl	74_37	-1	known	missense	c.2471	p.L824S	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF521	HGNC	ENSG00000198795				236	0	0	141	41	22.5275
TAF4B	0	genome.wustl.edu	37	18	23845164	23845164	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	18	23845164	23845164	C	T	SNP	TAF4B	ENST00000269142	human	ensembl	74_37	+1	known	missense	c.374	p.P125L	1.000	NULL	pfam_TAF4,pfam_TAFH_NHR1,superfamily_Histone-fold,smart_TAFH_NHR1,pfscan_TAFH_NHR1	-	no_errors	TAF4B	HGNC	ENSG00000141384				285	0	0	197	44	18.2573
DSC3	0	genome.wustl.edu	37	18	28605830	28605830	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	18	28605830	28605830	G	A	SNP	DSC3	ENST00000360428	human	ensembl	74_37	-1	known	missense	c.526	p.R176C	0.997	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin,prints_Cadherin/Desmocollin,prints_Desmosomal_cadherin	-	no_errors	DSC3	HGNC	ENSG00000134762				44	0	0	13	7	35
DSG3	0	genome.wustl.edu	37	18	29036431	29036431	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	18	29036431	29036431	G	A	SNP	DSG3	ENST00000257189	human	ensembl	74_37	+1	known	missense	c.77	p.R26Q	0.000	NULL	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin,prints_Desmoglein,prints_Desmosomal_cadherin	-	no_errors	DSG3	HGNC	ENSG00000134757				93	0	0	54	15	21.7391
FHOD3	0	genome.wustl.edu	37	18	34340718	34340718	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	18	34340718	34340718	G	A	SNP	FHOD3	ENST00000257209	human	ensembl	74_37	+1	known	missense	c.4048	p.V1350I	0.400	NULL	pfam_FH2_Formin,superfamily_ARM-type_fold,smart_FH2_Formin	-	no_errors	FHOD3	HGNC	ENSG00000134775				47	0	0	21	12	36.3636
SETBP1	0	genome.wustl.edu	37	18	42530073	42530073	+	Silent	SNP	C	C	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	18	42530073	42530073	C	A	SNP	SETBP1	ENST00000282030	human	ensembl	74_37	+1	known	silent	c.768	p.P256	0.877	NULL	smart_AT_hook_DNA-bd_motif	-	no_errors	SETBP1	HGNC	ENSG00000152217				176	1	0.564972	108	32	22.8571
SETBP1	0	genome.wustl.edu	37	18	42643634	42643634	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	18	42643634	42643634	C	T	SNP	SETBP1	ENST00000282030	human	ensembl	74_37	+1	known	nonsense	c.4762	p.R1588*	1.000	NULL	smart_AT_hook_DNA-bd_motif	-	no_errors	SETBP1	HGNC	ENSG00000152217				23	0	0	13	7	35
PSTPIP2	0	genome.wustl.edu	37	18	43579446	43579446	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	18	43579446	43579446	C	T	SNP	PSTPIP2	ENST00000409746	human	ensembl	74_37	-1	known	missense	c.472	p.V158I	1.000	NULL	pfam_FCH_dom,smart_FCH_dom,pfscan_FCH_dom	-	no_errors	PSTPIP2	HGNC	ENSG00000152229				199	0	0	120	30	20
SMAD7	0	genome.wustl.edu	37	18	46448038	46448038	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	18	46448038	46448038	C	T	SNP	SMAD7	ENST00000262158	human	ensembl	74_37	-1	known	missense	c.985	p.G329S	1.000	pfam_SMAD_dom_Dwarfin-type,superfamily_SMAD_FHA_domain,smart_SMAD_dom_Dwarfin-type,pfscan_SMAD_dom_Dwarfin-type	pfam_SMAD_dom_Dwarfin-type,pfam_MAD_homology1_Dwarfin-type,superfamily_SMAD_FHA_domain,superfamily_MAD_homology_MH1,smart_MAD_homology1_Dwarfin-type,smart_SMAD_dom_Dwarfin-type,pfscan_MAD_homology_MH1,pfscan_SMAD_dom_Dwarfin-type	-	no_errors	SMAD7	HGNC	ENSG00000101665				53	0	0	37	7	15.9091
EPB41L3	0	genome.wustl.edu	37	18	5410606	5410606	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	18	5410606	5410606	G	A	SNP	EPB41L3	ENST00000341928	human	ensembl	74_37	-1	known	missense	c.2080	p.R694C	1.000	pirsf_Band_41_protein	pirsf_Band_41_protein,pfam_Band_4.1_C,pfam_SAB_dom,pfam_FERM_N,pfam_FERM_PH-like_C,pfam_FERM_central,pfam_FERM-adjacent,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain,prints_Band_41_fam,prints_Ez/rad/moesin_like	-	no_errors	EPB41L3	HGNC	ENSG00000082397				36	0	0	29	9	23.6842
KIAA1468	0	genome.wustl.edu	37	18	59936122	59936122	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	18	59936122	59936122	G	A	SNP	KIAA1468	ENST00000256858	human	ensembl	74_37	+1	known	missense	c.2701	p.V901I	1.000	superfamily_ARM-type_fold	pfam_HEAT,superfamily_ARM-type_fold,smart_LisH_dimerisation,pfscan_HEAT_type_2,pfscan_LisH_dimerisation	-	no_errors	KIAA1468	HGNC	ENSG00000134444				25	0	0	12	7	36.8421
DSEL	0	genome.wustl.edu	37	18	65180208	65180208	+	Silent	SNP	A	A	G			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	18	65180208	65180208	A	G	SNP	DSEL	ENST00000310045	human	ensembl	74_37	-1	known	silent	c.1668	p.H556	0.368	NULL	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase,superfamily_Chondroitin_lyas	-	no_errors	DSEL	HGNC	ENSG00000171451				133	0	0	75	24	24.2424
CBLN2	0	genome.wustl.edu	37	18	70209175	70209175	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	18	70209175	70209175	G	A	SNP	CBLN2	ENST00000269503	human	ensembl	74_37	-1	known	missense	c.221	p.A74V	0.997	NULL	pfam_C1q,superfamily_Tumour_necrosis_fac-like_dom,smart_C1q,pfscan_C1q,prints_C1q	-	no_errors	CBLN2	HGNC	ENSG00000141668				40	0	0	18	6	25
NFATC1	0	genome.wustl.edu	37	18	77193701	77193701	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	18	77193701	77193701	C	G	SNP	NFATC1	ENST00000427363	human	ensembl	74_37	+1	known	missense	c.1349	p.A450G	1.000	pfam_RHD,superfamily_p53-like_TF_DNA-bd,pfscan_RHD	pfam_RHD,pfam_IPT,superfamily_p53-like_TF_DNA-bd,superfamily_Ig_E-set,smart_IPT,pfscan_RHD,prints_NFAT	-	no_errors	NFATC1	HGNC	ENSG00000131196				163	0	0	95	38	28.5714
PQLC1	0	genome.wustl.edu	37	18	77664092	77664092	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	18	77664092	77664092	C	T	SNP	PQLC1	ENST00000397778	human	ensembl	74_37	-1	known	missense	c.700	p.G234S	0.981	NULL	smart_CTNS	-	no_errors	PQLC1	HGNC	ENSG00000122490				53	0	0	36	12	25
LDLR	0	genome.wustl.edu	37	19	11224014	11224014	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	19	11224014	11224014	G	A	SNP	LDLR	ENST00000558518	human	ensembl	74_37	+1	known	missense	c.1247	p.R416Q	0.967	superfamily_Growth_fac_rcpt_N_dom	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,pfam_EGF-like_Ca-bd_dom,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LDLR	HGNC	ENSG00000130164				66	0	0	60	19	24.0506
EPOR	0	genome.wustl.edu	37	19	11493831	11493831	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	19	11493831	11493831	C	T	SNP	EPOR	ENST00000222139	human	ensembl	74_37	-1	known	missense	c.193	p.E65K	1.000	pirsf_Erythropoietin_rcpt,pfam_Growth/epo_recpt_lig-bind,superfamily_Fibronectin_type3	pirsf_Erythropoietin_rcpt,pfam_Growth/epo_recpt_lig-bind,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	EPOR	HGNC	ENSG00000187266				94	0	0	52	12	18.75
ZNF878	0	genome.wustl.edu	37	19	12155624	12155624	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	19	12155624	12155624	G	T	SNP	ZNF878	ENST00000602107	human	ensembl	74_37	-1	known	missense	c.733	p.P245T	0.999	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF878	HGNC	ENSG00000257446				339	1	0.294118	214	41	16.0784
ZNF442	0	genome.wustl.edu	37	19	12461820	12461820	+	Silent	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	19	12461820	12461820	C	T	SNP	ZNF442	ENST00000242804	human	ensembl	74_37	-1	known	silent	c.579	p.S193	0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF442	HGNC	ENSG00000198342				241	0	0	171	33	16.1765
DAND5	0	genome.wustl.edu	37	19	13080535	13080535	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	19	13080535	13080535	T	C	SNP	DAND5	ENST00000317060	human	ensembl	74_37	+1	known	missense	c.61	p.S21P	0.003	pirsf_Cerberus	pfam_DAN,pirsf_Cerberus	-	no_errors	DAND5	HGNC	ENSG00000179284				315	1	0.316456	204	31	13.1915
DAND5	0	genome.wustl.edu	37	19	13084382	13084382	+	Silent	SNP	C	C	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	19	13084382	13084382	C	A	SNP	DAND5	ENST00000317060	human	ensembl	74_37	+1	known	silent	c.504	p.A168	0.001	pfam_DAN,pirsf_Cerberus	pfam_DAN,pirsf_Cerberus	-	no_errors	DAND5	HGNC	ENSG00000179284				169	0	0	76	25	24.7525
TRMT1	0	genome.wustl.edu	37	19	13220273	13220273	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	19	13220273	13220273	G	A	SNP	TRMT1	ENST00000357720	human	ensembl	74_37	-1	known	missense	c.1319	p.P440L	0.933	pfam_TRM1,tigrfam_TRM1	pfam_TRM1,pfam_Znf_CCCH,pfam_tRNA_Trfase_Trm5/Tyw2,smart_Znf_CCCH,tigrfam_TRM1	-	no_errors	TRMT1	HGNC	ENSG00000104907				144	0	0	82	23	21.9048
CACNA1A	0	genome.wustl.edu	37	19	13419248	13419248	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	19	13419248	13419248	C	T	SNP	CACNA1A	ENST00000360228	human	ensembl	74_37	-1	known	missense	c.1763	p.R588H	1.000	pfam_Ion_trans_dom,pfam_PKD1_2_channel	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCCAlpha1,prints_VDCC_P/Q_a1su	-	no_errors	CACNA1A	HGNC	ENSG00000141837				32	0	0	18	4	18.1818
PCSK4	0	genome.wustl.edu	37	19	1483754	1483754	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	19	1483754	1483754	T	C	SNP	PCSK4	ENST00000300954	human	ensembl	74_37	-1	known	missense	c.1286	p.Y429C	1.000	pfam_Peptidase_S8/S53_dom,superfamily_Peptidase_S8/S53_dom	pfam_Peptidase_S8/S53_dom,pfam_PrprotnconvertsP,superfamily_Peptidase_S8/S53_dom,superfamily_Galactose-bd-like,superfamily_Prot_inh_propept,superfamily_Growth_fac_rcpt_N_dom,smart_Furin_repeat,prints_Peptidase_S8_subtilisin-rel	-	no_errors	PCSK4	HGNC	ENSG00000115257				19	0	0	19	3	13.6364
CYP4F3	0	genome.wustl.edu	37	19	15770052	15770052	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	19	15770052	15770052	G	A	SNP	CYP4F3	ENST00000221307	human	ensembl	74_37	+1	known	missense	c.1420	p.A474T	1.000	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450,prints_Cyt_P450_E_grp-II	-	no_errors	CYP4F3	HGNC	ENSG00000186529				58	0	0	44	7	13.7255
MBD3	0	genome.wustl.edu	37	19	1581136	1581136	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	19	1581136	1581136	G	A	SNP	MBD3	ENST00000156825	human	ensembl	74_37	-1	known	missense	c.632	p.T211M	0.300	superfamily_ARM-type_fold	pfam_Methyl_CpG_DNA-bd,superfamily_DNA-bd_dom,superfamily_ARM-type_fold,smart_Methyl_CpG_DNA-bd,pfscan_Methyl_CpG_DNA-bd	-	no_errors	MBD3	HGNC	ENSG00000071655				71	0	0	38	13	25.4902
OR10H1	0	genome.wustl.edu	37	19	15918055	15918055	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	19	15918055	15918055	T	C	SNP	OR10H1	ENST00000334920	human	ensembl	74_37	-1	known	missense	c.793	p.S265G	0.284	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR10H1	HGNC	ENSG00000186723				150	0	0	91	9	9
SIN3B	0	genome.wustl.edu	37	19	16980447	16980447	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	19	16980447	16980447	G	C	SNP	SIN3B	ENST00000379803	human	ensembl	74_37	+1	known	missense	c.2079	p.Q693H	0.999	NULL	pfam_PAH,pfam_HDAC_interact,superfamily_PAH,smart_HDAC_interact	-	no_errors	SIN3B	HGNC	ENSG00000127511				54	0	0	32	7	17.9487
CPAMD8	0	genome.wustl.edu	37	19	17137400	17137400	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	19	17137400	17137400	G	A	SNP	CPAMD8	ENST00000443236	human	ensembl	74_37	-1	known	missense	c.194	p.S65L	0.973	NULL	pfam_A2M_comp,pfam_A2M_N_2,pfam_Methyltransf_FA,pfam_Macroglobln_a2,pfam_A-macroglobulin_rcpt-bd,pfam_A2M_N,pfam_MacrogloblnA2_thiol-ester-bond,pfam_Kazal_dom,superfamily_Terpenoid_cyclase/PrenylTrfase,superfamily_A-macroglobulin_rcpt-bd,smart_Kazal_dom	-	no_errors	CPAMD8	HGNC	ENSG00000160111				9	0	0	9	4	30.7692
NR2F6	0	genome.wustl.edu	37	19	17343237	17343237	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	19	17343237	17343237	G	A	SNP	NR2F6	ENST00000291442	human	ensembl	74_37	-1	known	missense	c.1139	p.T380M	1.000	pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,prints_COUP_TF	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_COUP_TF,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt	-	no_errors	NR2F6	HGNC	ENSG00000160113				102	0	0	69	20	22.4719
ANO8	0	genome.wustl.edu	37	19	17441686	17441686	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	19	17441686	17441686	G	A	SNP	ANO8	ENST00000159087	human	ensembl	74_37	-1	known	missense	c.944	p.T315M	1.000	pfam_Anoctamin	pfam_Anoctamin	-	no_errors	ANO8	HGNC	ENSG00000074855				264	0	0	167	45	21.2264
UPF1	0	genome.wustl.edu	37	19	18967769	18967769	+	Silent	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	19	18967769	18967769	C	T	SNP	UPF1	ENST00000599848	human	ensembl	74_37	+1	known	silent	c.1941	p.D647	0.927	pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase	pfam_RNA-helicase_UPF1_UPF2-interct,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase	-	no_errors	UPF1	HGNC	ENSG00000005007				148	0	0	84	11	11.5789
TMEM161A	0	genome.wustl.edu	37	19	19245687	19245687	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	19	19245687	19245687	C	T	SNP	TMEM161A	ENST00000162044	human	ensembl	74_37	-1	known	missense	c.13	p.G5R	1.000	pfam_Transmembrane_161A/B	pfam_Transmembrane_161A/B	-	no_errors	TMEM161A	HGNC	ENSG00000064545				20	0	0	9	4	30.7692
CSNK1G2	0	genome.wustl.edu	37	19	1969844	1969844	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	19	1969844	1969844	C	T	SNP	CSNK1G2	ENST00000255641	human	ensembl	74_37	+1	known	missense	c.73	p.R25W	0.999	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Casein_kinase-1_gamma_C,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	CSNK1G2	HGNC	ENSG00000133275				42	0	0	20	8	28.5714
TMPRSS9	0	genome.wustl.edu	37	19	2421894	2421894	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	19	2421894	2421894	G	A	SNP	TMPRSS9	ENST00000332578	human	ensembl	74_37	+1	known	missense	c.2095	p.V699M	0.024	pirsf_Pept_S1A_polyserase-1,pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1	pirsf_Pept_S1A_polyserase-1,pfam_Peptidase_S1,pfam_Peptidase_S1A_nudel,pfam_LDrepeatLR_classA_rpt,superfamily_Trypsin-like_Pept_dom,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_Peptidase_S1,prints_Peptidase_S1A,pfscan_LDrepeatLR_classA_rpt,pfscan_Peptidase_S1	-	no_errors	TMPRSS9	HGNC	ENSG00000178297				191	0	0	130	35	21.2121
SLC39A3	0	genome.wustl.edu	37	19	2733010	2733010	+	Silent	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	19	2733010	2733010	G	A	SNP	SLC39A3	ENST00000269740	human	ensembl	74_37	-1	known	silent	c.684	p.D228	0.772	pfam_ZIP	pfam_ZIP	-	no_errors	SLC39A3	HGNC	ENSG00000141873				95	0	0	62	23	27.0588
THOP1	0	genome.wustl.edu	37	19	2813274	2813274	+	Nonstop_Mutation	SNP	A	A	C			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	19	2813274	2813274	A	C	SNP	THOP1	ENST00000307741	human	ensembl	74_37	+1	known	nonstop	c.2070	p.*690C	0.899	NULL	pfam_Pept_M3A_M3B	-	no_errors	THOP1	HGNC	ENSG00000172009				20	0	0	19	3	13.6364
MIER2	0	genome.wustl.edu	37	19	308804	308804	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	19	308804	308804	G	A	SNP	MIER2	ENST00000264819	human	ensembl	74_37	-1	known	missense	c.1106	p.T369I	1.000	NULL	pfam_ELM2_dom,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_ELM2_dom	-	no_errors	MIER2	HGNC	ENSG00000105556				60	0	0	41	14	25.4545
ZNF536	0	genome.wustl.edu	37	19	30936135	30936135	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	19	30936135	30936135	G	A	SNP	ZNF536	ENST00000355537	human	ensembl	74_37	+1	known	missense	c.1666	p.G556R	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF536	HGNC	ENSG00000198597				217	0	0	137	36	20.8092
ZNF536	0	genome.wustl.edu	37	19	31039610	31039610	+	Silent	SNP	G	G	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	19	31039610	31039610	G	T	SNP	ZNF536	ENST00000355537	human	ensembl	74_37	+1	known	silent	c.3084	p.A1028	0.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF536	HGNC	ENSG00000198597				118	0	0	53	15	22.0588
ZNF536	0	genome.wustl.edu	37	19	31039805	31039805	+	Silent	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	19	31039805	31039805	C	T	SNP	ZNF536	ENST00000355537	human	ensembl	74_37	+1	known	silent	c.3279	p.S1093	0.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF536	HGNC	ENSG00000198597				116	0	0	75	13	14.7727
SLC7A9	0	genome.wustl.edu	37	19	33355638	33355638	+	Silent	SNP	A	A	G			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	19	33355638	33355638	A	G	SNP	SLC7A9	ENST00000023064	human	ensembl	74_37	-1	known	silent	c.132	p.I44	0.956	pfam_AA-permease/SLC12A_dom,pirsf_AA/rel_permease1	pfam_AA-permease/SLC12A_dom,pirsf_AA/rel_permease1	-	no_errors	SLC7A9	HGNC	ENSG00000021488				293	0	0	195	67	25.5725
PEPD	0	genome.wustl.edu	37	19	34002042	34002042	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	19	34002042	34002042	G	A	SNP	PEPD	ENST00000244137	human	ensembl	74_37	-1	known	missense	c.221	p.A74V	0.995	pfam_Aminopep_P_N	pfam_Pept_M24_structural-domain,pfam_Aminopep_P_N,superfamily_Pept_M24_structural-domain	-	no_errors	PEPD	HGNC	ENSG00000124299				61	0	0	34	6	15
KCTD15	0	genome.wustl.edu	37	19	34297866	34297866	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	19	34297866	34297866	T	C	SNP	KCTD15	ENST00000430256	human	ensembl	74_37	+1	known	missense	c.341	p.L114P	1.000	pfam_T1-type_BTB,superfamily_BTB/POZ_fold,smart_BTB/POZ-like	pfam_T1-type_BTB,superfamily_BTB/POZ_fold,smart_BTB/POZ-like	-	no_errors	KCTD15	HGNC	ENSG00000153885				159	0	0	96	21	17.9487
DOHH	0	genome.wustl.edu	37	19	3496662	3496662	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	19	3496662	3496662	A	G	SNP	DOHH	ENST00000250937	human	ensembl	74_37	-1	known	missense	c.151	p.S51P	1.000	superfamily_ARM-type_fold	pfam_PBS_lyase_HEAT,superfamily_ARM-type_fold,smart_PBS_lyase_HEAT,pfscan_HEAT_type_2	-	no_errors	DOHH	HGNC	ENSG00000129932				81	0	0	51	12	19.0476
MFSD12	0	genome.wustl.edu	37	19	3546152	3546152	+	Silent	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	19	3546152	3546152	G	A	SNP	MFSD12	ENST00000398558	human	ensembl	74_37	-1	known	silent	c.1209	p.F403	0.999	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	-	no_errors	MFSD12	HGNC	ENSG00000161091				134	0	0	76	23	23.2323
MFSD12	0	genome.wustl.edu	37	19	3547329	3547329	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	19	3547329	3547329	G	T	SNP	MFSD12	ENST00000398558	human	ensembl	74_37	-1	known	missense	c.964	p.L322I	0.884	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	-	no_errors	MFSD12	HGNC	ENSG00000161091				146	1	0.680272	95	19	16.6667
TBXA2R	0	genome.wustl.edu	37	19	3595861	3595861	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	19	3595861	3595861	G	A	SNP	TBXA2R	ENST00000411851	human	ensembl	74_37	-1	known	missense	c.857	p.T286M	0.032	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Thbox_rcpt,prints_Prostanoid_rcpt,prints_GPCR_Rhodpsn	-	no_errors	TBXA2R	HGNC	ENSG00000006638				21	0	0	19	3	13.6364
CACTIN	0	genome.wustl.edu	37	19	3624077	3624077	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	19	3624077	3624077	C	A	SNP	CACTIN	ENST00000221899	human	ensembl	74_37	-1	known	missense	c.47	p.G16V	0.000	NULL	pfam_Cactin_dom,pfam_Cactin_C	-	no_errors	CACTIN	HGNC	ENSG00000105298				243	1	0.409836	135	42	23.7288
ZNF790	0	genome.wustl.edu	37	19	37310215	37310215	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	19	37310215	37310215	C	A	SNP	ZNF790	ENST00000356725	human	ensembl	74_37	-1	known	missense	c.1031	p.G344V	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF790	HGNC	ENSG00000197863				163	0	0	70	19	21.3483
TJP3	0	genome.wustl.edu	37	19	3734422	3734422	+	Silent	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	19	3734422	3734422	C	T	SNP	TJP3	ENST00000262968	human	ensembl	74_37	+1	known	silent	c.1074	p.T358	0.000	NULL	pfam_PDZ,pfam_SH3_2,pfam_GK/Ca_channel_bsu,superfamily_PDZ,superfamily_P-loop_NTPase,superfamily_SH3_domain,smart_PDZ,smart_SH3_domain,smart_GK/Ca_channel_bsu,pfscan_PDZ,pfscan_SH3_domain,pfscan_Guanylate_kin-like,prints_ZonOcculS3,prints_ZonOcculdens	-	no_errors	TJP3	HGNC	ENSG00000105289				49	0	0	34	8	19.0476
ZNF829	0	genome.wustl.edu	37	19	37383204	37383204	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	19	37383204	37383204	C	A	SNP	ZNF829	ENST00000520965	human	ensembl	74_37	-1	known	missense	c.732	p.K244N	0.890	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF829	HGNC	ENSG00000185869				46	0	0	29	7	19.4444
TJP3	0	genome.wustl.edu	37	19	3746525	3746525	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	19	3746525	3746525	C	T	SNP	TJP3	ENST00000262968	human	ensembl	74_37	+1	known	missense	c.2152	p.R718C	1.000	pfam_GK/Ca_channel_bsu,superfamily_P-loop_NTPase,smart_GK/Ca_channel_bsu,pfscan_Guanylate_kin-like	pfam_PDZ,pfam_SH3_2,pfam_GK/Ca_channel_bsu,superfamily_PDZ,superfamily_P-loop_NTPase,superfamily_SH3_domain,smart_PDZ,smart_SH3_domain,smart_GK/Ca_channel_bsu,pfscan_PDZ,pfscan_SH3_domain,pfscan_Guanylate_kin-like,prints_ZonOcculS3,prints_ZonOcculdens	-	no_errors	TJP3	HGNC	ENSG00000105289				104	0	0	77	27	25.9615
HKR1	0	genome.wustl.edu	37	19	37854119	37854119	+	Silent	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	19	37854119	37854119	C	T	SNP	HKR1	ENST00000324411	human	ensembl	74_37	+1	known	silent	c.1422	p.C474	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	HKR1	HGNC	ENSG00000181666				103	0	0	86	20	18.8679
ZNF607	0	genome.wustl.edu	37	19	38190221	38190221	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	19	38190221	38190221	G	A	SNP	ZNF607	ENST00000355202	human	ensembl	74_37	-1	known	missense	c.811	p.H271Y	0.996	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF607	HGNC	ENSG00000198182				119	0	0	54	17	23.9437
SIPA1L3	0	genome.wustl.edu	37	19	38579399	38579399	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	19	38579399	38579399	C	T	SNP	SIPA1L3	ENST00000222345	human	ensembl	74_37	+1	known	missense	c.1573	p.P525S	0.998	NULL	pfam_DUF3401,pfam_Rap_GAP_dom,superfamily_PDZ,smart_PDZ,pfscan_PDZ,pfscan_Rap_GAP_dom	-	no_errors	SIPA1L3	HGNC	ENSG00000105738				99	0	0	54	19	26.0274
GGN	0	genome.wustl.edu	37	19	38876201	38876201	+	Silent	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	19	38876201	38876201	G	A	SNP	GGN	ENST00000334928	human	ensembl	74_37	-1	known	silent	c.1701	p.S567	0.098	NULL	NULL	-	no_errors	GGN	HGNC	ENSG00000179168				50	0	0	31	8	20.5128
CLC	0	genome.wustl.edu	37	19	40225698	40225698	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	19	40225698	40225698	C	T	SNP	CLC	ENST00000221804	human	ensembl	74_37	-1	known	missense	c.31	p.A11T	0.000	superfamily_ConA-like_lec_gl_sf,smart_Galectin_CRD	pfam_Galectin_CRD,superfamily_ConA-like_lec_gl_sf,smart_Galectin_CRD	-	no_errors	CLC	HGNC	ENSG00000105205				94	0	0	50	18	26.4706
PSMC4	0	genome.wustl.edu	37	19	40480659	40480659	+	Silent	SNP	C	C	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	19	40480659	40480659	C	A	SNP	PSMC4	ENST00000157812	human	ensembl	74_37	+1	known	silent	c.597	p.P199	1.000	superfamily_P-loop_NTPase,smart_AAA+_ATPase,tigrfam_26S_Psome_P45	pfam_ATPase_AAA_core,pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA-2,pfam_DNA_helicase_Holl-junc_RuvB_N,superfamily_P-loop_NTPase,smart_AAA+_ATPase,tigrfam_26S_Psome_P45	-	no_errors	PSMC4	HGNC	ENSG00000013275				89	0	0	46	12	20.6897
SPTBN4	0	genome.wustl.edu	37	19	40978686	40978686	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	19	40978686	40978686	A	G	SNP	SPTBN4	ENST00000352632	human	ensembl	74_37	+1	known	missense	c.158	p.K53R	1.000	pirsf_Spectrin_bsu,superfamily_CH-domain	pirsf_Spectrin_bsu,pfam_Spectrin_repeat,pfam_CH-domain,pfam_Pleckstrin_homology,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Pleckstrin_homology,prints_PH_dom-spectrin-type,pfscan_CH-domain,pfscan_Pleckstrin_homology	-	no_errors	SPTBN4	HGNC	ENSG00000160460				8	0	0	13	3	18.75
HNRNPUL1	0	genome.wustl.edu	37	19	41778132	41778132	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	19	41778132	41778132	G	T	SNP	HNRNPUL1	ENST00000392006	human	ensembl	74_37	+1	known	missense	c.564	p.E188D	0.997	superfamily_ConA-like_lec_gl_sf	pfam_SPRY_rcpt,pfam_SAP_dom,superfamily_ConA-like_lec_gl_sf,superfamily_P-loop_NTPase,smart_SAP_dom,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_SAP_dom	-	no_errors	HNRNPUL1	HGNC	ENSG00000105323				378	1	0.263852	268	62	18.7879
DMRTC2	0	genome.wustl.edu	37	19	42352907	42352907	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	19	42352907	42352907	G	A	SNP	DMRTC2	ENST00000601660	human	ensembl	74_37	+1	known	missense	c.532	p.A178T	1.000	NULL	pfam_DM_DNA-bd,superfamily_DM_DNA-bd,smart_DM_DNA-bd,pfscan_DM_DNA-bd	-	no_errors	DMRTC2	HGNC	ENSG00000142025				299	0	0	199	75	27.3723
ATP1A3	0	genome.wustl.edu	37	19	42482921	42482921	+	Silent	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	19	42482921	42482921	G	A	SNP	ATP1A3	ENST00000302102	human	ensembl	74_37	-1	known	silent	c.1467	p.N489	0.026	pfam_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,superfamily_HAD-like_dom,tigrfam_ATPase_P-typ_Na/K_IIC	pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_cation-transptr_C,pfam_HAD-like_dom,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_P-typ_cyto_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Na/K_IIC,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP1A3	HGNC	ENSG00000105409				150	0	0	106	29	21.4815
ATP1A3	0	genome.wustl.edu	37	19	42492106	42492106	+	Silent	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	19	42492106	42492106	G	A	SNP	ATP1A3	ENST00000302102	human	ensembl	74_37	-1	known	silent	c.339	p.D113	0.721	tigrfam_ATPase_P-typ_Na/K_IIC	pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_cation-transptr_C,pfam_HAD-like_dom,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_P-typ_cyto_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Na/K_IIC,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP1A3	HGNC	ENSG00000105409				213	0	0	161	44	21.4634
SHD	0	genome.wustl.edu	37	19	4283236	4283236	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	19	4283236	4283236	G	A	SNP	SHD	ENST00000543264	human	ensembl	74_37	+1	known	missense	c.589	p.A197T	1.000	NULL	pfam_SH2,smart_SH2,pfscan_SH2,prints_SH2	-	no_errors	SHD	HGNC	ENSG00000105251				56	0	0	49	16	24.6154
PSG8	0	genome.wustl.edu	37	19	43259305	43259305	+	Silent	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	19	43259305	43259305	G	A	SNP	PSG8	ENST00000306511	human	ensembl	74_37	-1	known	silent	c.823	p.L275	0.003	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	PSG8	HGNC	ENSG00000124467				347	0	0	228	74	24.5033
DMPK	0	genome.wustl.edu	37	19	46281042	46281042	+	Silent	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	19	46281042	46281042	G	A	SNP	DMPK	ENST00000343373	human	ensembl	74_37	-1	known	silent	c.795	p.Y265	0.998	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Myotonic_dystrophy_kinase_coil,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_Prot_kinase_dom	-	no_errors	DMPK	HGNC	ENSG00000104936				230	1	0.4329	161	46	22.2222
SYMPK	0	genome.wustl.edu	37	19	46332457	46332457	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	19	46332457	46332457	T	C	SNP	SYMPK	ENST00000245934	human	ensembl	74_37	-1	known	missense	c.1756	p.I586V	0.990	superfamily_ARM-type_fold	pfam_DUF3453,pfam_Symplekin_C,superfamily_ARM-type_fold	-	no_errors	SYMPK	HGNC	ENSG00000125755				80	0	0	50	9	15.2542
PPP5C	0	genome.wustl.edu	37	19	46888085	46888085	+	Silent	SNP	C	C	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	19	46888085	46888085	C	A	SNP	PPP5C	ENST00000012443	human	ensembl	74_37	+1	known	silent	c.823	p.R275	1.000	pfam_PEstase_dom,smart_Ser/Thr-sp_prot-phosphatase,pirsf_Ser/Thr_PPase_5,prints_Ser/Thr-sp_prot-phosphatase	pfam_PEstase_dom,pfam_PPP_dom,pfam_TPR_1,pfam_TPR_2,smart_TPR_repeat,smart_Ser/Thr-sp_prot-phosphatase,pirsf_Ser/Thr_PPase_5,pfscan_TPR_repeat,pfscan_TPR-contain_dom,prints_Ser/Thr-sp_prot-phosphatase	-	no_errors	PPP5C	HGNC	ENSG00000011485				162	0	0	113	20	15.0376
CCDC8	0	genome.wustl.edu	37	19	46915402	46915402	+	Silent	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	19	46915402	46915402	G	A	SNP	CCDC8	ENST00000307522	human	ensembl	74_37	-1	known	silent	c.666	p.G222	0.000	NULL	NULL	-	no_errors	CCDC8	HGNC	ENSG00000169515				50	0	0	32	9	21.9512
TICAM1	0	genome.wustl.edu	37	19	4816902	4816902	+	Silent	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	19	4816902	4816902	C	T	SNP	TICAM1	ENST00000248244	human	ensembl	74_37	-1	known	silent	c.1488	p.P496	0.005	pirsf_TICAM1	superfamily_TIR_dom,pirsf_TICAM1	-	no_errors	TICAM1	HGNC	ENSG00000127666				80	0	0	55	17	23.6111
KCNJ14	0	genome.wustl.edu	37	19	48965204	48965204	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	19	48965204	48965204	A	C	SNP	KCNJ14	ENST00000342291	human	ensembl	74_37	+1	known	missense	c.223	p.S75R	1.000	pfam_K_chnl_inward-rec_Kir,pirsf_K_chnl_inward-rec_Kir	pfam_K_chnl_inward-rec_Kir,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir	-	no_errors	KCNJ14	HGNC	ENSG00000182324				47	0	0	26	12	31.5789
PPP1R15A	0	genome.wustl.edu	37	19	49377689	49377689	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	19	49377689	49377689	A	G	SNP	PPP1R15A	ENST00000200453	human	ensembl	74_37	+1	known	missense	c.1199	p.E400G	0.148	NULL	pfam_Prot_Pase1_reg-su15A/B_C	-	no_errors	PPP1R15A	HGNC	ENSG00000087074				255	2	0.77821	162	51	23.9437
NUCB1	0	genome.wustl.edu	37	19	49425616	49425616	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	19	49425616	49425616	G	A	SNP	NUCB1	ENST00000263273	human	ensembl	74_37	+1	known	missense	c.1321	p.V441M	0.006	NULL	pfscan_EF_hand_dom	-	no_errors	NUCB1	HGNC	ENSG00000104805				216	1	0.460829	168	11	6.14525
KCNA7	0	genome.wustl.edu	37	19	49573562	49573562	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	19	49573562	49573562	G	C	SNP	KCNA7	ENST00000221444	human	ensembl	74_37	-1	known	missense	c.1129	p.L377V	0.997	pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom,prints_K_chnl	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv1	-	no_errors	KCNA7	HGNC	ENSG00000104848				74	0	0	48	3	5.88235
KCNA7	0	genome.wustl.edu	37	19	49575520	49575520	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	19	49575520	49575520	T	G	SNP	KCNA7	ENST00000221444	human	ensembl	74_37	-1	known	missense	c.323	p.E108A	1.000	superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl_volt-dep_Kv1	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv1	-	no_errors	KCNA7	HGNC	ENSG00000104848				14	0	0	9	6	40
SCAF1	0	genome.wustl.edu	37	19	50148366	50148366	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	19	50148366	50148366	C	T	SNP	SCAF1	ENST00000360565	human	ensembl	74_37	+1	known	missense	c.83	p.T28M	0.989	NULL	NULL	-	no_errors	SCAF1	HGNC	ENSG00000126461				77	0	0	47	13	21.6667
AP2A1	0	genome.wustl.edu	37	19	50302683	50302683	+	Silent	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	19	50302683	50302683	G	A	SNP	AP2A1	ENST00000354293	human	ensembl	74_37	+1	known	silent	c.1065	p.T355	0.876	pfam_Clathrin/coatomer_adapt-like_N,superfamily_ARM-type_fold,pirsf_AP2_complex_asu	pfam_Clathrin/coatomer_adapt-like_N,pfam_Clathrin_a-adaptin_app_sub_C,pfam_Clathrin_a/b/g-adaptin_app_Ig,superfamily_ARM-type_fold,superfamily_Coatomer/calthrin_app_sub_C,superfamily_Coatomer/clathrin_app_Ig-like,smart_Clathrin_a/b/g-adaptin_app_Ig,pirsf_AP2_complex_asu	-	no_errors	AP2A1	HGNC	ENSG00000196961				22	0	0	15	8	34.7826
SIGLEC16	0	genome.wustl.edu	37	19	50473353	50473353	+	RNA	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	19	50473353	50473353	G	A	SNP	SIGLEC16	ENST00000602139	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	SIGLEC16	HGNC	ENSG00000161643				51	0	0	21	10	32.2581
KDM4B	0	genome.wustl.edu	37	19	5047503	5047503	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	19	5047503	5047503	A	G	SNP	KDM4B	ENST00000159111	human	ensembl	74_37	+1	known	missense	c.449	p.N150S	1.000	smart_JmjC_dom,pfscan_JmjC_dom	pfam_JmjC_dom,pfam_TF_JmjN,superfamily_Znf_FYVE_PHD,smart_TF_JmjN,smart_JmjC_dom,smart_Znf_PHD,smart_Tudor,pfscan_TF_JmjN,pfscan_JmjC_dom	-	no_errors	KDM4B	HGNC	ENSG00000127663				79	0	0	50	12	19.3548
POLD1	0	genome.wustl.edu	37	19	50905572	50905572	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	19	50905572	50905572	G	A	SNP	POLD1	ENST00000440232	human	ensembl	74_37	+1	known	missense	c.700	p.A234T	0.771	pfam_DNA-dir_DNA_pol_B_exonuc,superfamily_RNaseH-like_dom	pfam_DNA-dir_DNA_pol_B_multi_dom,pfam_DNA-dir_DNA_pol_B_exonuc,superfamily_RNaseH-like_dom,smart_DNA-dir_DNA_pol_B,prints_DNA-dir_DNA_pol_B,tigrfam_DNA-dir_DNA_pol_B_pol2	-	no_errors	POLD1	HGNC	ENSG00000062822				106	0	0	82	6	6.81818
SIGLEC9	0	genome.wustl.edu	37	19	51629113	51629113	+	Silent	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	19	51629113	51629113	C	T	SNP	SIGLEC9	ENST00000440804	human	ensembl	74_37	+1	known	silent	c.681	p.T227	0.047	smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,pfscan_Ig-like_dom	-	no_errors	SIGLEC9	HGNC	ENSG00000129450				161	0	0	86	24	21.8182
PTPRS	0	genome.wustl.edu	37	19	5238970	5238970	+	Silent	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	19	5238970	5238970	G	A	SNP	PTPRS	ENST00000372412	human	ensembl	74_37	-1	known	silent	c.1812	p.G604	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Fibronectin_type3,pfam_Ig_I-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_rcpt/non-rcpt,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like_dom	-	no_errors	PTPRS	HGNC	ENSG00000105426				93	0	0	71	21	22.8261
LOC101928571	0	genome.wustl.edu	37	19	52403509	52403509	+	RNA	SNP	T	T	C			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	19	52403509	52403509	T	C	SNP	LOC101928571	ENST00000600329	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	CTC-429C10.2	Clone_based_vega_gene	ENSG00000268095				32	0	0	13	7	35
ZNF432	0	genome.wustl.edu	37	19	52538109	52538109	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	19	52538109	52538109	G	A	SNP	ZNF432	ENST00000221315	human	ensembl	74_37	-1	known	missense	c.823	p.R275C	0.001	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF432	HGNC	ENSG00000256087				186	1	0.534759	109	32	22.695
NLRP12	0	genome.wustl.edu	37	19	54314259	54314259	+	Silent	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	19	54314259	54314259	C	T	SNP	NLRP12	ENST00000324134	human	ensembl	74_37	-1	known	silent	c.654	p.A218	0.633	superfamily_P-loop_NTPase,pfscan_NACHT_NTPase	pfam_DAPIN,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP12	HGNC	ENSG00000142405				139	1	0.714286	83	27	24.5455
EPS8L1	0	genome.wustl.edu	37	19	55593853	55593853	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	19	55593853	55593853	C	T	SNP	EPS8L1	ENST00000201647	human	ensembl	74_37	+1	known	missense	c.1097	p.A366V	0.655	NULL	pfam_PTB,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,superfamily_SAM/pointed,smart_PTB/PI_dom,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	EPS8L1	HGNC	ENSG00000131037				29	0	0	17	6	26.087
ZNF628	0	genome.wustl.edu	37	19	55995118	55995118	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	19	55995118	55995118	C	T	SNP	ZNF628	ENST00000598519	human	ensembl	74_37	+1	known	missense	c.2558	p.T853M	0.872	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF628	HGNC	ENSG00000197483				92	0	0	57	16	21.9178
NLRP4	0	genome.wustl.edu	37	19	56379209	56379209	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	19	56379209	56379209	T	C	SNP	NLRP4	ENST00000301295	human	ensembl	74_37	+1	known	missense	c.2321	p.L774P	0.005	smart_Leu-rich_rpt_RNase_inh_sub-typ	pfam_DAPIN,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP4	HGNC	ENSG00000160505				146	0	0	83	25	23.1481
NLRP8	0	genome.wustl.edu	37	19	56467052	56467052	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	19	56467052	56467052	C	T	SNP	NLRP8	ENST00000291971	human	ensembl	74_37	+1	known	missense	c.1628	p.A543V	0.001	NULL	pfam_DAPIN,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP8	HGNC	ENSG00000179709				197	0	0	124	50	28.7356
ZFP28	0	genome.wustl.edu	37	19	57065621	57065621	+	Silent	SNP	A	A	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	19	57065621	57065621	A	T	SNP	ZFP28	ENST00000301318	human	ensembl	74_37	+1	known	silent	c.1467	p.T489	0.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZFP28	HGNC	ENSG00000196867				169	0	0	86	19	18.0952
LONP1	0	genome.wustl.edu	37	19	5711821	5711821	+	Silent	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	19	5711821	5711821	G	A	SNP	LONP1	ENST00000360614	human	ensembl	74_37	-1	known	silent	c.831	p.N277	0.440	pfam_Pept_S16_N,smart_Pept_S16_N,tigrfam_Lon_bac/euk-typ	pfam_Pept_S16_C,pfam_Pept_S16_N,pfam_ATPase_AAA_core,pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA-2,pfam_DNA_helicase_Holl-junc_RuvB_N,pfam_Prk_AAA_dom,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_P-loop_NTPase,superfamily_PUA-like_domain,smart_Pept_S16_N,smart_AAA+_ATPase,tigrfam_Lon_bac/euk-typ	-	no_errors	LONP1	HGNC	ENSG00000196365				187	1	0.531915	127	37	22.561
ZNF71	0	genome.wustl.edu	37	19	57133351	57133351	+	Silent	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	19	57133351	57133351	C	T	SNP	ZNF71	ENST00000328070	human	ensembl	74_37	+1	known	silent	c.696	p.H232	0.031	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF71	HGNC	ENSG00000197951				93	0	0	57	18	24
ZNF835	0	genome.wustl.edu	37	19	57176021	57176021	+	Silent	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	19	57176021	57176021	C	T	SNP	ZNF835	ENST00000537055	human	ensembl	74_37	-1	known	silent	c.546	p.A182	0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF835	HGNC	ENSG00000127903				20	0	0	15	4	21.0526
AURKC	0	genome.wustl.edu	37	19	57746748	57746748	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	19	57746748	57746748	G	A	SNP	AURKC	ENST00000302804	human	ensembl	74_37	+1	known	missense	c.893	p.R298Q	1.000	superfamily_Kinase-like_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	AURKC	HGNC	ENSG00000105146				185	0	0	118	28	19.1781
DUS3L	0	genome.wustl.edu	37	19	5786792	5786792	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	19	5786792	5786792	C	A	SNP	DUS3L	ENST00000309061	human	ensembl	74_37	-1	known	missense	c.1454	p.C485F	1.000	pfam_tRNA_hU_synthase	pfam_tRNA_hU_synthase	-	no_errors	DUS3L	HGNC	ENSG00000141994				38	0	0	30	8	21.0526
ZNF772	0	genome.wustl.edu	37	19	57987127	57987127	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	19	57987127	57987127	C	T	SNP	ZNF772	ENST00000343280	human	ensembl	74_37	-1	known	missense	c.100	p.V34M	0.581	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF772	HGNC	ENSG00000197128				159	0	0	72	14	16.2791
ZNF134	0	genome.wustl.edu	37	19	58131878	58131878	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	19	58131878	58131878	C	T	SNP	ZNF134	ENST00000396161	human	ensembl	74_37	+1	known	missense	c.391	p.P131S	0.013	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF134	HGNC	ENSG00000213762				78	0	0	47	13	21.6667
ZNF154	0	genome.wustl.edu	37	19	58213887	58213887	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	19	58213887	58213887	C	T	SNP	ZNF154	ENST00000426889	human	ensembl	74_37	-1	known	missense	c.430	p.G144S	0.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF154	HGNC	ENSG00000179909				563	0	0	363	99	21.4286
ZNF552	0	genome.wustl.edu	37	19	58320008	58320008	+	Silent	SNP	T	T	C			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	19	58320008	58320008	T	C	SNP	ZNF552	ENST00000391701	human	ensembl	74_37	-1	known	silent	c.624	p.G208	0.018	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF552	HGNC	ENSG00000178935				175	0	0	100	31	23.6641
ZBTB45	0	genome.wustl.edu	37	19	59025430	59025430	+	Silent	SNP	A	A	C			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	19	59025430	59025430	A	C	SNP	ZBTB45	ENST00000354590	human	ensembl	74_37	-1	known	silent	c.1527	p.P509	0.896	pfscan_Znf_C2H2	pfam_BTB_POZ,pfam_Znf_C2H2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB45	HGNC	ENSG00000119574				21	0	0	10	3	23.0769
RFX2	0	genome.wustl.edu	37	19	6002844	6002844	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	19	6002844	6002844	C	T	SNP	RFX2	ENST00000303657	human	ensembl	74_37	-1	known	missense	c.1538	p.R513H	0.961	NULL	pfam_RFX1_trans_act,pfam_DNA-bd_RFX	-	no_errors	RFX2	HGNC	ENSG00000087903				38	0	0	26	4	13.3333
RFX2	0	genome.wustl.edu	37	19	6040186	6040186	+	Silent	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	19	6040186	6040186	G	A	SNP	RFX2	ENST00000303657	human	ensembl	74_37	-1	known	silent	c.327	p.F109	0.996	pfam_RFX1_trans_act	pfam_RFX1_trans_act,pfam_DNA-bd_RFX	-	no_errors	RFX2	HGNC	ENSG00000087903				210	0	0	126	37	22.6994
VAV1	0	genome.wustl.edu	37	19	6825086	6825086	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	19	6825086	6825086	G	A	SNP	VAV1	ENST00000602142	human	ensembl	74_37	+1	known	missense	c.677	p.R226Q	0.988	pfam_DH-domain,superfamily_DH-domain,superfamily_CH-domain,smart_DH-domain,pfscan_DH-domain	pfam_DH-domain,pfam_SH3_domain,pfam_SH3_2,pfam_CAMSAP_CH,pfam_SH2,pfam_CH-domain,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pleckstrin_homology,superfamily_DH-domain,superfamily_CH-domain,superfamily_SH3_domain,smart_CH-domain,smart_DH-domain,smart_Pleckstrin_homology,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_SH3_domain,smart_SH2,pfscan_CH-domain,pfscan_Pleckstrin_homology,pfscan_SH2,pfscan_SH3_domain,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_DH-domain,prints_SH3_domain,prints_SH2,prints_SM22_calponin	-	no_errors	VAV1	HGNC	ENSG00000141968				274	0	0	191	47	19.7479
EMR1	0	genome.wustl.edu	37	19	6924823	6924823	+	Silent	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	19	6924823	6924823	C	T	SNP	EMR1	ENST00000312053	human	ensembl	74_37	+1	known	silent	c.1926	p.C642	0.956	pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like,prints_GPCR_2_EMR1_rcpt	pfam_GPCR_2_secretin-like,pfam_EGF-like_Ca-bd_dom,pfam_GPS_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_GPS_dom,pfscan_EG-like_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_EMR1_rcpt,prints_GPCR_2_secretin-like	-	no_errors	EMR1	HGNC	ENSG00000174837				128	0	0	97	13	11.8182
EMR1	0	genome.wustl.edu	37	19	6935074	6935074	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	19	6935074	6935074	C	T	SNP	EMR1	ENST00000312053	human	ensembl	74_37	+1	known	missense	c.2366	p.T789M	0.000	pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like,prints_GPCR_2_EMR1_rcpt	pfam_GPCR_2_secretin-like,pfam_EGF-like_Ca-bd_dom,pfam_GPS_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_GPS_dom,pfscan_EG-like_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_EMR1_rcpt,prints_GPCR_2_secretin-like	-	no_errors	EMR1	HGNC	ENSG00000174837				180	1	0.552486	122	29	19.2053
EMR1	0	genome.wustl.edu	37	19	6937643	6937643	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	19	6937643	6937643	C	A	SNP	EMR1	ENST00000312053	human	ensembl	74_37	+1	known	missense	c.2639	p.P880Q	0.001	prints_GPCR_2_EMR1_rcpt	pfam_GPCR_2_secretin-like,pfam_EGF-like_Ca-bd_dom,pfam_GPS_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_GPS_dom,pfscan_EG-like_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_EMR1_rcpt,prints_GPCR_2_secretin-like	-	no_errors	EMR1	HGNC	ENSG00000174837				183	0	0	108	28	20.5882
PALM	0	genome.wustl.edu	37	19	726187	726187	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	19	726187	726187	G	A	SNP	PALM	ENST00000338448	human	ensembl	74_37	+1	known	missense	c.55	p.A19T	0.997	NULL	pfam_Paralemmin	-	no_errors	PALM	HGNC	ENSG00000099864				114	0	0	78	17	17.8947
PALM	0	genome.wustl.edu	37	19	746564	746564	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	19	746564	746564	A	G	SNP	PALM	ENST00000338448	human	ensembl	74_37	+1	known	missense	c.914	p.Y305C	1.000	pfam_Paralemmin	pfam_Paralemmin	-	no_errors	PALM	HGNC	ENSG00000099864				76	0	0	62	4	6.06061
PNPLA6	0	genome.wustl.edu	37	19	7625616	7625616	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	19	7625616	7625616	G	A	SNP	PNPLA6	ENST00000414982	human	ensembl	74_37	+1	known	missense	c.3812	p.R1271Q	1.000	NULL	pfam_cNMP-bd_dom,pfam_Patatin/PLipase_A2-rel,superfamily_Acyl_Trfase/lysoPLipase,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom	-	no_errors	PNPLA6	HGNC	ENSG00000032444				36	0	0	34	10	22.7273
CD209	0	genome.wustl.edu	37	19	7812255	7812255	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	19	7812255	7812255	A	G	SNP	CD209	ENST00000601951	human	ensembl	74_37	-1	known	missense	c.43	p.S15P	0.005	NULL	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin,prints_AntifreezeII	-	no_errors	CD209	HGNC	ENSG00000090659				673	0	0	493	83	14.4097
MAP2K7	0	genome.wustl.edu	37	19	7975347	7975347	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	19	7975347	7975347	C	T	SNP	MAP2K7	ENST00000545011	human	ensembl	74_37	+1	known	missense	c.583	p.R195C	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	MAP2K7	HGNC	ENSG00000076984				28	0	0	11	5	31.25
ANGPTL4	0	genome.wustl.edu	37	19	8431200	8431200	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	19	8431200	8431200	C	T	SNP	ANGPTL4	ENST00000301455	human	ensembl	74_37	+1	known	missense	c.544	p.H182Y	0.360	superfamily_Fibrinogen_a/b/g_C_dom	pfam_Fibrinogen_a/b/g_C_dom,superfamily_Fibrinogen_a/b/g_C_dom,smart_Fibrinogen_a/b/g_C_dom	-	no_errors	ANGPTL4	HGNC	ENSG00000167772				71	0	0	44	12	21.4286
MUC16	0	genome.wustl.edu	37	19	9067398	9067398	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	19	9067398	9067398	G	A	SNP	MUC16	ENST00000397910	human	ensembl	74_37	-1	known	missense	c.20048	p.T6683I	0.007	NULL	pfam_SEA_dom,smart_SEA_dom,pfscan_SEA_dom	-	no_errors	MUC16	HGNC	ENSG00000181143				300	0	0	212	63	22.9091
MUC16	0	genome.wustl.edu	37	19	9068980	9068980	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	19	9068980	9068980	C	T	SNP	MUC16	ENST00000397910	human	ensembl	74_37	-1	known	missense	c.18466	p.A6156T	0.000	NULL	pfam_SEA_dom,smart_SEA_dom,pfscan_SEA_dom	-	no_errors	MUC16	HGNC	ENSG00000181143				100	0	0	59	19	24.359
ZNF317	0	genome.wustl.edu	37	19	9271917	9271917	+	Silent	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	19	9271917	9271917	C	T	SNP	ZNF317	ENST00000247956	human	ensembl	74_37	+1	known	silent	c.1596	p.C532	0.062	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF317	HGNC	ENSG00000130803				96	0	0	54	16	22.8571
ZNF426	0	genome.wustl.edu	37	19	9640164	9640164	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	19	9640164	9640164	A	G	SNP	ZNF426	ENST00000253115	human	ensembl	74_37	-1	known	missense	c.557	p.L186P	0.001	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,pfam_Znf_C2H2_jaz,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,smart_Znf_BED_prd,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF426	HGNC	ENSG00000130818				148	0	0	90	28	23.7288
IL1RL2	0	genome.wustl.edu	37	2	102805670	102805670	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	2	102805670	102805670	G	A	SNP	IL1RL2	ENST00000264257	human	ensembl	74_37	+1	known	missense	c.193	p.V65M	0.000	smart_Ig_sub,pfscan_Ig-like_dom,prints_IL-1_rcpt_I/II-typ,prints_IL-1_rcpt_I-typ	pfam_TIR_dom,superfamily_TIR_dom,smart_Ig_sub,smart_TIR_dom,pfscan_TIR_dom,pfscan_Ig-like_dom,prints_IL-1_rcpt_I/II-typ,prints_IL-1_rcpt_I-typ	-	no_errors	IL1RL2	HGNC	ENSG00000115598				95	0	0	57	23	28.75
NCK2	0	genome.wustl.edu	37	2	106497989	106497989	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	2	106497989	106497989	C	G	SNP	NCK2	ENST00000233154	human	ensembl	74_37	+1	known	missense	c.432	p.C144W	1.000	pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pirsf_Cytoplasmic_NCK,pfscan_SH3_domain	pfam_SH3_domain,pfam_SH3_2,pfam_SH2,superfamily_SH3_domain,smart_SH3_domain,smart_SH2,pirsf_Cytoplasmic_NCK,pfscan_SH2,pfscan_SH3_domain,prints_SH2,prints_SH3_domain	-	no_errors	NCK2	HGNC	ENSG00000071051				122	0	0	79	15	15.9574
ST6GAL2	0	genome.wustl.edu	37	2	107446579	107446579	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	2	107446579	107446579	T	C	SNP	ST6GAL2	ENST00000361686	human	ensembl	74_37	-1	known	missense	c.1261	p.I421V	1.000	pfam_Glyco_trans_29,superfamily_Glyco_hydro/deAcase_b/a-brl	pfam_Glyco_trans_29,superfamily_Glyco_hydro/deAcase_b/a-brl	-	no_errors	ST6GAL2	HGNC	ENSG00000144057				206	0	0	108	26	19.403
RANBP2	0	genome.wustl.edu	37	2	109371714	109371714	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	2	109371714	109371714	A	C	SNP	RANBP2	ENST00000283195	human	ensembl	74_37	+1	known	missense	c.2465	p.K822T	1.000	NULL	pfam_Ran_bind_dom,pfam_Znf_RanBP2,pfam_IR1-M,pfam_Cyclophilin-like_PPIase_dom,pfam_TPR_1,superfamily_Cyclophilin-like_PPIase_dom,smart_TPR_repeat,smart_Ran_bind_dom,smart_Znf_RanBP2,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_Znf_RanBP2,pfscan_Cyclophilin-like_PPIase_dom,pfscan_Ran_bind_dom,prints_Cyclophilin-like_PPIase_dom	-	no_errors	RANBP2	HGNC	ENSG00000153201				215	0	0	174	10	5.43478
EDAR	0	genome.wustl.edu	37	2	109524475	109524475	+	Silent	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	2	109524475	109524475	G	A	SNP	EDAR	ENST00000376651	human	ensembl	74_37	-1	known	silent	c.900	p.S300	0.818	NULL	pfam_Death_domain,superfamily_DEATH-like_dom	-	no_errors	EDAR	HGNC	ENSG00000135960				37	0	0	31	13	29.5455
PSD4	0	genome.wustl.edu	37	2	113950132	113950132	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	2	113950132	113950132	C	T	SNP	PSD4	ENST00000245796	human	ensembl	74_37	+1	known	missense	c.1804	p.R602W	1.000	pfam_Sec7_dom,superfamily_Sec7_dom,smart_Sec7_dom,pfscan_Sec7_dom	pfam_Sec7_dom,pfam_Pleckstrin_homology,superfamily_Sec7_dom,smart_Sec7_dom,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Sec7_dom,prints_PH_dom-spectrin-type	-	no_errors	PSD4	HGNC	ENSG00000125637				139	0	0	79	22	21.7822
GREB1	0	genome.wustl.edu	37	2	11736258	11736258	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	2	11736258	11736258	T	C	SNP	GREB1	ENST00000234142	human	ensembl	74_37	+1	known	missense	c.1847	p.L616P	1.000	NULL	superfamily_P-loop_NTPase	-	no_errors	GREB1	HGNC	ENSG00000196208				220	0	0	130	34	20.7317
DDX18	0	genome.wustl.edu	37	2	118583858	118583858	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	2	118583858	118583858	G	A	SNP	DDX18	ENST00000263239	human	ensembl	74_37	+1	known	missense	c.1535	p.R512H	1.000	pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_C,pfscan_Helicase_C	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DDX18	HGNC	ENSG00000088205				62	0	0	33	9	21.4286
STEAP3	0	genome.wustl.edu	37	2	120005432	120005432	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	2	120005432	120005432	G	A	SNP	STEAP3	ENST00000393110	human	ensembl	74_37	+1	known	missense	c.700	p.V234I	0.008	NULL	pfam_Fe3_Rdtase_TM_dom	-	no_errors	STEAP3	HGNC	ENSG00000115107				154	0	0	88	18	16.9811
INHBB	0	genome.wustl.edu	37	2	121107175	121107175	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	2	121107175	121107175	T	C	SNP	INHBB	ENST00000295228	human	ensembl	74_37	+1	known	missense	c.949	p.W317R	1.000	pfam_TGF-b_C,smart_TGF-b_C,prints_Inhibin_asu	pfam_TGF-b_C,pfam_TGF-b_N,smart_TGF-b_C,prints_Inhibin_betaB,prints_Inhibin_asu	-	no_errors	INHBB	HGNC	ENSG00000163083				144	0	0	103	31	23.1343
GLI2	0	genome.wustl.edu	37	2	121744020	121744020	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	2	121744020	121744020	C	T	SNP	GLI2	ENST00000361492	human	ensembl	74_37	+1	known	missense	c.2123	p.A708V	0.986	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	GLI2	HGNC	ENSG00000074047				67	0	0	41	9	18
SAP130	0	genome.wustl.edu	37	2	128700069	128700069	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	2	128700069	128700069	G	A	SNP	SAP130	ENST00000357702	human	ensembl	74_37	-1	known	nonsense	c.3022	p.Q1008*	1.000	NULL	NULL	-	no_errors	SAP130	HGNC	ENSG00000136715				128	1	0.775194	102	20	16.3934
UGGT1	0	genome.wustl.edu	37	2	128865513	128865513	+	Silent	SNP	T	T	C			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	2	128865513	128865513	T	C	SNP	UGGT1	ENST00000259253	human	ensembl	74_37	+1	known	silent	c.279	p.G93	1.000	NULL	pfam_UDP-g_GGtrans	-	no_errors	UGGT1	HGNC	ENSG00000136731				283	0	0	159	36	18.4615
POTEJ	0	genome.wustl.edu	37	2	131414424	131414424	+	Silent	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	2	131414424	131414424	C	T	SNP	POTEJ	ENST00000409602	human	ensembl	74_37	+1	novel	silent	c.2091	p.I697	1.000	pfam_Actin-related,smart_Actin-related,prints_Actin-related	pfam_Actin-related,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Actin-related,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Actin-related	-	no_errors	POTEJ	HGNC	ENSG00000222038				187	0	0	108	49	31.2102
NCKAP5	0	genome.wustl.edu	37	2	133543248	133543248	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	2	133543248	133543248	G	A	SNP	NCKAP5	ENST00000317721	human	ensembl	74_37	-1	known	missense	c.1136	p.S379L	0.996	NULL	NULL	-	no_errors	NCKAP5	HGNC	ENSG00000176771				53	0	0	27	8	22.8571
MGAT5	0	genome.wustl.edu	37	2	135102526	135102526	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	2	135102526	135102526	C	T	SNP	MGAT5	ENST00000281923	human	ensembl	74_37	+1	known	nonsense	c.1003	p.R335*	1.000	NULL	NULL	-	no_errors	MGAT5	HGNC	ENSG00000152127				193	0	0	106	21	16.5354
LCT	0	genome.wustl.edu	37	2	136561685	136561685	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	2	136561685	136561685	T	C	SNP	LCT	ENST00000264162	human	ensembl	74_37	-1	known	missense	c.4478	p.H1493R	1.000	pfam_Glyco_hydro_1,superfamily_Glycoside_hydrolase_SF	pfam_Glyco_hydro_1,superfamily_Glycoside_hydrolase_SF,prints_Glyco_hydro_1	-	no_errors	LCT	HGNC	ENSG00000115850				65	0	0	54	7	11.4754
LCT	0	genome.wustl.edu	37	2	136566693	136566693	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	2	136566693	136566693	C	T	SNP	LCT	ENST00000264162	human	ensembl	74_37	-1	known	missense	c.3224	p.G1075D	0.998	pfam_Glyco_hydro_1,superfamily_Glycoside_hydrolase_SF	pfam_Glyco_hydro_1,superfamily_Glycoside_hydrolase_SF,prints_Glyco_hydro_1	-	no_errors	LCT	HGNC	ENSG00000115850				79	0	0	51	10	16.3934
RND3	0	genome.wustl.edu	37	2	151326739	151326739	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	2	151326739	151326739	G	A	SNP	RND3	ENST00000263895	human	ensembl	74_37	-1	known	missense	c.497	p.A166V	1.000	pfam_Small_GTPase,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RND3	HGNC	ENSG00000115963				116	0	0	68	21	23.5955
NEB	0	genome.wustl.edu	37	2	152500546	152500546	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	2	152500546	152500546	G	A	SNP	NEB	ENST00000397345	human	ensembl	74_37	-1	known	missense	c.7742	p.A2581V	1.000	pfam_Nebulin_35r-motif,smart_Nebulin_35r-motif,pfscan_Nebulin_35r-motif	pfam_Nebulin_35r-motif,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,superfamily_Adhesion_dom,superfamily_6-PGluconate_DH_C-like,smart_Nebulin_35r-motif,smart_SH3_domain,pfscan_Nebulin_35r-motif,pfscan_SH3_domain,prints_Nebulin	-	no_errors	NEB	HGNC	ENSG00000183091				699	0	0	413	103	19.9612
RBMS1	0	genome.wustl.edu	37	2	161223832	161223832	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	2	161223832	161223832	C	T	SNP	RBMS1	ENST00000392753	human	ensembl	74_37	-1	known	missense	c.146	p.S49N	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,prints_Hud_Sxl_RNA	-	no_errors	RBMS1	HGNC	ENSG00000153250				125	0	0	79	24	23.301
TTC21B	0	genome.wustl.edu	37	2	166747406	166747406	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	2	166747406	166747406	G	A	SNP	TTC21B	ENST00000243344	human	ensembl	74_37	-1	known	missense	c.3043	p.R1015C	0.982	pfscan_TPR-contain_dom	smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC21B	HGNC	ENSG00000123607				97	0	0	43	11	20.3704
NOSTRIN	0	genome.wustl.edu	37	2	169718513	169718513	+	Silent	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	2	169718513	169718513	G	A	SNP	NOSTRIN	ENST00000444448	human	ensembl	74_37	+1	known	silent	c.1509	p.L503	0.949	pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain,prints_SH3_domain	pfam_SH3_domain,pfam_SH3_2,pfam_FCH_dom,superfamily_SH3_domain,superfamily_HR1_rho-bd,smart_SH3_domain,pfscan_FCH_dom,pfscan_SH3_domain,prints_SH3_domain	-	no_errors	NOSTRIN	HGNC	ENSG00000163072				180	0	0	108	37	25.5172
LRP2	0	genome.wustl.edu	37	2	170099926	170099926	+	Silent	SNP	A	A	G			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	2	170099926	170099926	A	G	SNP	LRP2	ENST00000263816	human	ensembl	74_37	-1	known	silent	c.3537	p.D1179	1.000	pfam_LDrepeatLR_classA_rpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,prints_LDrepeatLR_classA_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,superfamily_TIL_dom,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP2	HGNC	ENSG00000081479				183	0	0	93	23	19.8276
SP5	0	genome.wustl.edu	37	2	171572828	171572828	+	Silent	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	2	171572828	171572828	C	T	SNP	SP5	ENST00000375281	human	ensembl	74_37	+1	known	silent	c.111	p.A37	0.881	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	SP5	HGNC	ENSG00000204335				54	0	0	44	11	20
TTN	0	genome.wustl.edu	37	2	179397575	179397575	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	2	179397575	179397575	C	A	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.96063	p.Q32021H	1.000	superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				87	0	0	77	19	19.7917
TTN	0	genome.wustl.edu	37	2	179416834	179416834	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	2	179416834	179416834	G	A	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.83089	p.R27697W	1.000	pfam_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_Fibronectin_type3,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				256	0	0	146	31	17.5141
TTN	0	genome.wustl.edu	37	2	179422586	179422586	+	Silent	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	2	179422586	179422586	G	A	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	silent	c.79791	p.D26597	1.000	pfam_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_Fibronectin_type3,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				515	0	0	296	86	22.5131
ENSG00000270574	0	genome.wustl.edu	37	2	179444123	179444123	+	RNA	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	2	179444123	179444123	G	A	SNP	ENSG00000270574	ENST00000603521	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.071	-	-	-	no_errors	RP11-171I2.2	Clone_based_vega_gene	ENSG00000270574				75	0	0	39	10	20.4082
TTN	0	genome.wustl.edu	37	2	179444665	179444665	+	Splice_Site	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	2	179444665	179444665	C	T	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	splice_site	c.59644+1	e266+1	1.000	-	-	-	no_errors	TTN	HGNC	ENSG00000155657				165	0	0	94	19	16.8142
TTN	0	genome.wustl.edu	37	2	179605782	179605782	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	2	179605782	179605782	G	T	SNP	TTN	ENST00000342175	human	ensembl	74_37	-1	known	missense	c.11665	p.P3889T	0.000	superfamily_RNaseH-like_dom	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				356	1	0.280112	234	57	19.5876
TTN	0	genome.wustl.edu	37	2	179666960	179666960	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	2	179666960	179666960	A	T	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.200	p.I67N	1.000	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				150	0	0	103	8	7.20721
ITGAV	0	genome.wustl.edu	37	2	187541976	187541976	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	2	187541976	187541976	A	G	SNP	ITGAV	ENST00000261023	human	ensembl	74_37	+1	known	missense	c.3104	p.Q1035R	1.000	NULL	pfam_Integrin_alpha-2,pfam_FG-GAP,pfam_Integrin_alpha_C_CS,smart_Int_alpha_beta-p,prints_Integrin_alpha	-	no_errors	ITGAV	HGNC	ENSG00000138448				85	0	0	35	10	22.2222
DNAH7	0	genome.wustl.edu	37	2	196722261	196722261	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	2	196722261	196722261	G	A	SNP	DNAH7	ENST00000312428	human	ensembl	74_37	-1	known	missense	c.8254	p.L2752F	1.000	superfamily_Signal_recog_particle_SRP9/14	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,superfamily_P-loop_NTPase,superfamily_Signal_recog_particle_SRP9/14,smart_AAA+_ATPase,pfscan_EF_hand_dom	-	no_errors	DNAH7	HGNC	ENSG00000118997				167	0	0	88	25	22.1239
SATB2	0	genome.wustl.edu	37	2	200246470	200246470	+	Silent	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	2	200246470	200246470	G	A	SNP	SATB2	ENST00000260926	human	ensembl	74_37	-1	known	silent	c.420	p.A140	1.000	NULL	pfam_Hmoeo_CUT,pfam_Homeobox_dom,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Hmoeo_CUT	-	no_errors	SATB2	HGNC	ENSG00000119042				141	0	0	71	15	17.4419
RAPH1	0	genome.wustl.edu	37	2	204304285	204304285	+	Silent	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	2	204304285	204304285	G	A	SNP	RAPH1	ENST00000374493	human	ensembl	74_37	-1	known	silent	c.3784	p.L1262	1.000	NULL	pfam_Ras-assoc,pfam_Pleckstrin_homology,superfamily_Kinase-like_dom,smart_Ras-assoc,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Ras-assoc,prints_Paxillin	-	no_errors	RAPH1	HGNC	ENSG00000173166				89	0	0	44	6	12
ABCA12	0	genome.wustl.edu	37	2	215809820	215809820	+	Silent	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	2	215809820	215809820	C	T	SNP	ABCA12	ENST00000272895	human	ensembl	74_37	-1	known	silent	c.7248	p.P2416	0.388	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA12	HGNC	ENSG00000144452				69	0	0	22	5	18.5185
ABCA12	0	genome.wustl.edu	37	2	215843717	215843717	+	Silent	SNP	T	T	C			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	2	215843717	215843717	T	C	SNP	ABCA12	ENST00000272895	human	ensembl	74_37	-1	known	silent	c.4788	p.T1596	0.044	NULL	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA12	HGNC	ENSG00000144452				96	0	0	56	10	15.1515
SMARCAL1	0	genome.wustl.edu	37	2	217280167	217280167	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	2	217280167	217280167	G	A	SNP	SMARCAL1	ENST00000357276	human	ensembl	74_37	+1	known	missense	c.740	p.R247H	0.560	NULL	pfam_HARP_dom,pfam_SNF2_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	SMARCAL1	HGNC	ENSG00000138375				219	0	0	121	31	20.3947
SLC11A1	0	genome.wustl.edu	37	2	219259385	219259385	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	2	219259385	219259385	G	A	SNP	SLC11A1	ENST00000233202	human	ensembl	74_37	+1	known	missense	c.1419	p.M473I	0.990	NULL	pfam_NRAMP-like,prints_NRAMP-like,tigrfam_NRAMP-like	-	no_errors	SLC11A1	HGNC	ENSG00000018280				182	0	0	123	18	12.766
STK36	0	genome.wustl.edu	37	2	219562280	219562280	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	2	219562280	219562280	G	A	SNP	STK36	ENST00000295709	human	ensembl	74_37	+1	known	missense	c.2856	p.M952I	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	STK36	HGNC	ENSG00000163482				120	0	0	87	22	20.1835
WNT6	0	genome.wustl.edu	37	2	219736229	219736229	+	Silent	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	2	219736229	219736229	G	A	SNP	WNT6	ENST00000233948	human	ensembl	74_37	+1	known	silent	c.324	p.V108	0.996	pfam_Wnt,smart_Wnt,prints_Wnt	pfam_Wnt,smart_Wnt,prints_Wnt,prints_Wnt6	-	no_errors	WNT6	HGNC	ENSG00000115596				58	0	0	40	10	20
WNT10A	0	genome.wustl.edu	37	2	219745808	219745808	+	Silent	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	2	219745808	219745808	C	T	SNP	WNT10A	ENST00000258411	human	ensembl	74_37	+1	known	silent	c.91	p.L31	1.000	NULL	pfam_Wnt,smart_Wnt,prints_Wnt,prints_Wnt10	-	no_errors	WNT10A	HGNC	ENSG00000135925				19	0	0	8	6	42.8571
WNT10A	0	genome.wustl.edu	37	2	219754704	219754704	+	Splice_Site	SNP	A	A	G			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	2	219754704	219754704	A	G	SNP	WNT10A	ENST00000258411	human	ensembl	74_37	+1	known	splice_site	c.377-2	e3-2	1.000	-	-	-	no_errors	WNT10A	HGNC	ENSG00000135925				184	0	0	99	29	22.6562
ASIC4	0	genome.wustl.edu	37	2	220396848	220396848	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	2	220396848	220396848	C	T	SNP	ASIC4	ENST00000347842	human	ensembl	74_37	+1	known	missense	c.1234	p.R412W	1.000	pfam_Na+channel_ASC	pfam_Na+channel_ASC,prints_Na+channel_ASC	-	no_errors	ASIC4	HGNC	ENSG00000072182				147	1	0.675676	98	25	20.3252
OBSL1	0	genome.wustl.edu	37	2	220424192	220424192	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	2	220424192	220424192	C	T	SNP	OBSL1	ENST00000404537	human	ensembl	74_37	-1	known	missense	c.2981	p.R994H	0.828	pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	OBSL1	HGNC	ENSG00000124006				187	0	0	107	23	17.6923
INHA	0	genome.wustl.edu	37	2	220439886	220439886	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	2	220439886	220439886	C	T	SNP	INHA	ENST00000243786	human	ensembl	74_37	+1	known	missense	c.739	p.R247C	0.723	pirsf_Inhibin_asu_subgr,prints_Inhibin_asu	pfam_TGF-b_C,smart_TGF-b_C,pirsf_Inhibin_asu_subgr,prints_Inhibin_asu	-	no_errors	INHA	HGNC	ENSG00000123999				101	0	0	69	16	18.8235
SLC4A3	0	genome.wustl.edu	37	2	220500084	220500084	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	2	220500084	220500084	C	T	SNP	SLC4A3	ENST00000273063	human	ensembl	74_37	+1	known	missense	c.1919	p.P640L	1.000	pfam_Band3_cytoplasmic_dom,superfamily_PTrfase/Anion_transptr,tigrfam_HCO3_transpt_euk	pfam_HCO3_transpt_C,pfam_Band3_cytoplasmic_dom,superfamily_PTrfase/Anion_transptr,prints_HCO3_transpt_euk,prints_Anion_exchange_3,prints_Anion_exchange,tigrfam_HCO3_transpt_euk	-	no_errors	SLC4A3	HGNC	ENSG00000114923				87	0	0	51	15	22.7273
GPR55	0	genome.wustl.edu	37	2	231775249	231775249	+	Silent	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	2	231775249	231775249	G	A	SNP	GPR55	ENST00000392039	human	ensembl	74_37	-1	known	silent	c.429	p.C143	0.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	GPR55	HGNC	ENSG00000135898				129	0	0	90	26	22.4138
ALPPL2	0	genome.wustl.edu	37	2	233274566	233274566	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	2	233274566	233274566	C	T	SNP	ALPPL2	ENST00000295453	human	ensembl	74_37	+1	known	missense	c.1583	p.T528M	0.000	NULL	pfam_Alkaline_phosphatase,superfamily_Alkaline_phosphatase_core,smart_Alkaline_phosphatase,prints_Alkaline_phosphatase	-	no_errors	ALPPL2	HGNC	ENSG00000163286				17	0	0	10	3	23.0769
ECEL1	0	genome.wustl.edu	37	2	233349233	233349233	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	2	233349233	233349233	G	A	SNP	ECEL1	ENST00000304546	human	ensembl	74_37	-1	known	missense	c.1133	p.A378V	1.000	pfam_Peptidase_M13_N	pfam_Peptidase_M13_N,pfam_Peptidase_M13_C,prints_Peptidase_M13_C	-	no_errors	ECEL1	HGNC	ENSG00000171551				304	0	0	196	56	22.2222
UGT1A8	0	genome.wustl.edu	37	2	234668982	234668982	+	Silent	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	2	234668982	234668982	C	T	SNP	UGT1A8	ENST00000305208	human	ensembl	74_37	+1	known	silent	c.49	p.L17	1.000	NULL	pfam_UDP_glucos_trans,pfam_Glyco_trans_28_C	-	no_errors	UGT1A8	HGNC	ENSG00000242366				63	0	0	36	9	20
COL6A3	0	genome.wustl.edu	37	2	238289604	238289604	+	Silent	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	2	238289604	238289604	C	T	SNP	COL6A3	ENST00000295550	human	ensembl	74_37	-1	known	silent	c.1851	p.L617	0.998	smart_VWF_A,pfscan_VWF_A	pfam_VWF_A,pfam_Collagen,pfam_Prot_inh_Kunz-m,superfamily_Prot_inh_Kunz-m,superfamily_Fibronectin_type3,smart_VWF_A,smart_Prot_inh_Kunz-m,pfscan_Fibronectin_type3,pfscan_VWF_A,pfscan_Prot_inh_Kunz-m,prints_Prot_inh_Kunz-m	-	no_errors	COL6A3	HGNC	ENSG00000163359				73	0	0	49	9	15.5172
RNPEPL1	0	genome.wustl.edu	37	2	241512610	241512610	+	Silent	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	2	241512610	241512610	G	A	SNP	RNPEPL1	ENST00000270357	human	ensembl	74_37	+1	known	silent	c.60	p.E20	1.000	pfam_Peptidase_M1_N,prints_Peptidase_M1_N	pfam_Peptidase_M1_C,pfam_Peptidase_M1_N,superfamily_ARM-type_fold,prints_Peptidase_M1_N	-	no_errors	RNPEPL1	HGNC	ENSG00000142327				14	0	0	15	3	16.6667
RNPEPL1	0	genome.wustl.edu	37	2	241516387	241516387	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	2	241516387	241516387	C	T	SNP	RNPEPL1	ENST00000270357	human	ensembl	74_37	+1	known	missense	c.1171	p.R391W	1.000	pfam_Peptidase_M1_C,superfamily_ARM-type_fold	pfam_Peptidase_M1_C,pfam_Peptidase_M1_N,superfamily_ARM-type_fold,prints_Peptidase_M1_N	-	no_errors	RNPEPL1	HGNC	ENSG00000142327				114	0	0	73	17	18.8889
MTERFD2	0	genome.wustl.edu	37	2	242027902	242027902	+	RNA	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	2	242027902	242027902	C	T	SNP	MTERFD2	ENST00000455202	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	MTERFD2	HGNC	ENSG00000122085				35	0	0	21	7	25
PASK	0	genome.wustl.edu	37	2	242065690	242065690	+	Silent	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	2	242065690	242065690	G	A	SNP	PASK	ENST00000358649	human	ensembl	74_37	-1	known	silent	c.2640	p.R880	0.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_PAS_fold,superfamily_Kinase-like_dom,superfamily_PAS,smart_PAS,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_PAS,pfscan_Prot_kinase_dom,tigrfam_PAS	-	no_errors	PASK	HGNC	ENSG00000115687				182	0	0	102	32	23.8806
ITSN2	0	genome.wustl.edu	37	2	24521655	24521655	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	2	24521655	24521655	C	T	SNP	ITSN2	ENST00000355123	human	ensembl	74_37	-1	known	missense	c.1373	p.R458H	0.998	NULL	pfam_SH3_domain,pfam_SH3_2,pfam_DH-domain,pfam_C2_dom,superfamily_DH-domain,superfamily_C2_dom,superfamily_SH3_domain,smart_EPS15_homology,smart_EF_hand_dom,smart_SH3_domain,smart_DH-domain,smart_Pleckstrin_homology,smart_C2_dom,pfscan_EF_hand_dom,pfscan_EPS15_homology,pfscan_C2_dom,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_DH-domain,prints_SH3_domain,prints_p67phox	-	no_errors	ITSN2	HGNC	ENSG00000198399				239	0	0	107	36	25.1748
ASXL2	0	genome.wustl.edu	37	2	25965592	25965592	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	2	25965592	25965592	G	A	SNP	ASXL2	ENST00000435504	human	ensembl	74_37	-1	known	missense	c.3614	p.A1205V	0.655	NULL	superfamily_Znf_FYVE_PHD	-	no_errors	ASXL2	HGNC	ENSG00000143970				163	0	0	92	27	22.6891
KIF3C	0	genome.wustl.edu	37	2	26178514	26178514	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	2	26178514	26178514	T	A	SNP	KIF3C	ENST00000264712	human	ensembl	74_37	-1	known	missense	c.1666	p.M556L	1.000	NULL	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF3C	HGNC	ENSG00000084731				141	0	0	109	34	23.7762
KIF3C	0	genome.wustl.edu	37	2	26178519	26178519	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	2	26178519	26178519	C	T	SNP	KIF3C	ENST00000264712	human	ensembl	74_37	-1	known	missense	c.1661	p.R554Q	1.000	NULL	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF3C	HGNC	ENSG00000084731				138	1	0.719424	109	31	22.1429
HADHB	0	genome.wustl.edu	37	2	26492864	26492864	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	2	26492864	26492864	A	T	SNP	HADHB	ENST00000317799	human	ensembl	74_37	+1	known	missense	c.253	p.T85S	0.924	pfam_Thiolase_N,superfamily_Thiolase-like,tigrfam_Thiolase	pfam_Thiolase_N,pfam_Thiolase_C,pfam_Ketoacyl_synth_N,superfamily_Thiolase-like,tigrfam_Thiolase	-	no_errors	HADHB	HGNC	ENSG00000138029				153	0	0	101	6	5.60748
SLC35F6	0	genome.wustl.edu	37	2	26998046	26998046	+	Silent	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	2	26998046	26998046	G	A	SNP	SLC35F6	ENST00000344420	human	ensembl	74_37	+1	known	silent	c.285	p.A95	1.000	pfam_SLC35_F1/F2/F6,pfam_Nuc_sug_transpt,pirsf_UCP036436	pfam_SLC35_F1/F2/F6,pfam_Nuc_sug_transpt,pfam_DMT,pfam_Tpt_PEP_trans_dom,pfam_UAA,pirsf_UCP036436	-	no_errors	SLC35F6	HGNC	ENSG00000213699				140	0	0	76	21	21.6495
ABHD1	0	genome.wustl.edu	37	2	27351875	27351875	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	2	27351875	27351875	G	A	SNP	ABHD1	ENST00000316470	human	ensembl	74_37	+1	known	missense	c.338	p.S113N	0.040	pirsf_AB-Hydro_YheT	pfam_AB_hydrolase_1,pirsf_AB-Hydro_YheT	-	no_errors	ABHD1	HGNC	ENSG00000143994				156	0	0	96	29	23.2
TMEM178A	0	genome.wustl.edu	37	2	39944310	39944310	+	Silent	SNP	T	T	C			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	2	39944310	39944310	T	C	SNP	TMEM178A	ENST00000281961	human	ensembl	74_37	+1	known	silent	c.813	p.A271	1.000	NULL	NULL	-	no_errors	TMEM178A	HGNC	ENSG00000152154				188	1	0.529101	102	24	19.0476
MSH6	0	genome.wustl.edu	37	2	48026138	48026138	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	2	48026138	48026138	C	A	SNP	MSH6	ENST00000234420	human	ensembl	74_37	+1	known	missense	c.1016	p.A339D	0.998	pirsf_DNA_mismatch_repair_Msh6	pfam_DNA_mismatch_repair_MutS_C,pfam_DNA_mismatch_repair_MutS-lik_N,pfam_DNA_mismatch_repair_MutS_core,pfam_PWWP_dom,pfam_DNA_mismatch_repair_MutS_clamp,pfam_DNA_mmatch_repair_MutS_con_dom,superfamily_DNA_mismatch_repair_MutS_core,superfamily_P-loop_NTPase,superfamily_DNA_mismatch_repair_MutS_N,superfamily_DNA_mmatch_repair_MutS_con_dom,smart_PWWP_dom,smart_DNA_mismatch_repair_MutS_core,smart_DNA_mismatch_repair_MutS_C,pirsf_DNA_mismatch_repair_Msh6,pfscan_PWWP_dom	-	no_errors	MSH6	HGNC	ENSG00000116062				291	0	0	219	48	17.9775
LHCGR	0	genome.wustl.edu	37	2	48915426	48915426	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	2	48915426	48915426	C	T	SNP	LHCGR	ENST00000294954	human	ensembl	74_37	-1	known	missense	c.1510	p.G504S	1.000	pfam_GPCR_Rhodpsn,prints_Gphrmn_rcpt_fam,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,prints_LSH_rcpt,prints_Gphrmn_rcpt_fam,prints_GPCR_Rhodpsn,prints_TSH_rcpt,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	LHCGR	HGNC	ENSG00000138039				201	0	0	127	21	14.1892
GPR75	0	genome.wustl.edu	37	2	54080276	54080276	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	2	54080276	54080276	C	T	SNP	GPR75	ENST00000394705	human	ensembl	74_37	-1	known	missense	c.1618	p.V540I	1.000	NULL	pfam_GPCR_Rhodpsn,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	GPR75	HGNC	ENSG00000119737				158	0	0	94	15	13.7615
MXD1	0	genome.wustl.edu	37	2	70164409	70164409	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	2	70164409	70164409	C	T	SNP	MXD1	ENST00000264444	human	ensembl	74_37	+1	known	nonsense	c.361	p.Q121*	1.000	superfamily_bHLH_dom	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	MXD1	HGNC	ENSG00000059728				196	0	0	134	45	25.1397
ASPRV1	0	genome.wustl.edu	37	2	70188638	70188638	+	Silent	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	2	70188638	70188638	C	T	SNP	ASPRV1	ENST00000320256	human	ensembl	74_37	-1	known	silent	c.183	p.A61	0.993	NULL	pfam_Peptidase_aspartic_DDI1-type,pfam_Pept_A2A_retrovirus_sg,superfamily_Peptidase_aspartic_dom,pfscan_Peptidase_A2_cat	-	no_errors	ASPRV1	HGNC	ENSG00000244617				92	0	0	60	16	21.0526
DYSF	0	genome.wustl.edu	37	2	71894590	71894590	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	2	71894590	71894590	C	T	SNP	DYSF	ENST00000413539	human	ensembl	74_37	+1	known	missense	c.5378	p.P1793L	0.922	NULL	pfam_C2_dom,pfam_Ferlin_B-domain,pfam_FerIin-domain,pfam_Ferlin_A-domain,superfamily_C2_dom,superfamily_MFS_dom_general_subst_transpt,smart_C2_dom,smart_Peroxin/Ferlin,pfscan_C2_dom	-	no_errors	DYSF	HGNC	ENSG00000135636				143	0	0	89	41	31.5385
EGR4	0	genome.wustl.edu	37	2	73518943	73518943	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	2	73518943	73518943	G	A	SNP	EGR4	ENST00000545030	human	ensembl	74_37	-1	known	missense	c.1412	p.T471M	0.988	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	EGR4	HGNC	ENSG00000135625				23	0	0	17	8	32
ALMS1	0	genome.wustl.edu	37	2	73677057	73677057	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	2	73677057	73677057	G	A	SNP	ALMS1	ENST00000264448	human	ensembl	74_37	+1	known	missense	c.3400	p.G1134S	0.014	NULL	NULL	-	no_errors	ALMS1	HGNC	ENSG00000116127				356	1	0.280112	204	49	19.3676
DCTN1	0	genome.wustl.edu	37	2	74597938	74597938	+	Silent	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	2	74597938	74597938	C	T	SNP	DCTN1	ENST00000361874	human	ensembl	74_37	-1	known	silent	c.858	p.A286	0.000	NULL	pfam_Dynactin,pfam_CAP-Gly_domain,superfamily_CAP-Gly_domain,superfamily_Polyketide_synth_docking,superfamily_P-loop_NTPase,pfscan_CAP-Gly_domain	-	no_errors	DCTN1	HGNC	ENSG00000204843				199	2	0.995025	134	35	20.7101
LOXL3	0	genome.wustl.edu	37	2	74761465	74761465	+	Silent	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	2	74761465	74761465	G	A	SNP	LOXL3	ENST00000264094	human	ensembl	74_37	-1	known	silent	c.1917	p.L639	0.998	pfam_Lysyl_oxidase	pfam_Lysyl_oxidase,pfam_SRCR,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_SRCR,prints_Lysyl_oxidase,prints_SRCR	-	no_errors	LOXL3	HGNC	ENSG00000115318				153	0	0	85	37	30.3279
REG1A	0	genome.wustl.edu	37	2	79348754	79348754	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	2	79348754	79348754	G	A	SNP	REG1A	ENST00000233735	human	ensembl	74_37	+1	known	missense	c.131	p.R44H	0.000	superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin,prints_AntifreezeII	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin,prints_AntifreezeII	-	no_errors	REG1A	HGNC	ENSG00000115386				397	0	0	238	68	22.2222
MAT2A	0	genome.wustl.edu	37	2	85769750	85769750	+	Silent	SNP	T	T	C			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	2	85769750	85769750	T	C	SNP	MAT2A	ENST00000306434	human	ensembl	74_37	+1	known	silent	c.831	p.H277	0.994	pfam_S-AdoMet_synt_C,superfamily_S-AdoMet_synthetase_sfam,pirsf_S-AdoMet_synthetase,tigrfam_S-AdoMet_synthetase	pfam_S-AdoMet_synt_C,pfam_S-AdoMet_synt_central,pfam_S-AdoMet_synt_N,superfamily_S-AdoMet_synthetase_sfam,pirsf_S-AdoMet_synthetase,tigrfam_S-AdoMet_synthetase	-	no_errors	MAT2A	HGNC	ENSG00000168906				107	0	0	50	18	26.4706
ASAP2	0	genome.wustl.edu	37	2	9525431	9525431	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	2	9525431	9525431	C	T	SNP	ASAP2	ENST00000281419	human	ensembl	74_37	+1	known	nonsense	c.2074	p.R692*	1.000	superfamily_Ankyrin_rpt-contain_dom	pfam_ArfGAP,pfam_Pleckstrin_homology,pfam_Ankyrin_rpt,pfam_SH3_domain,pfam_SH3_2,superfamily_Ankyrin_rpt-contain_dom,superfamily_SH3_domain,smart_Pleckstrin_homology,smart_ArfGAP,smart_Ankyrin_rpt,smart_SH3_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_ArfGAP,prints_ArfGAP	-	no_errors	ASAP2	HGNC	ENSG00000151693				86	0	0	55	9	14.0625
ADRA2B	0	genome.wustl.edu	37	2	96781451	96781451	+	Silent	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	2	96781451	96781451	C	T	SNP	ADRA2B	ENST00000409345	human	ensembl	74_37	-1	known	silent	c.438	p.P146	0.968	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_ADRA2B_rcpt,prints_GPCR_Rhodpsn,prints_ADR_fam	-	no_errors	ADRA2B	HGNC	ENSG00000222040				56	0	0	41	5	10.8696
KIAA1211L	0	genome.wustl.edu	37	2	99413824	99413824	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	2	99413824	99413824	C	T	SNP	KIAA1211L	ENST00000397899	human	ensembl	74_37	-1	known	missense	c.2593	p.E865K	0.498	NULL	NULL	-	no_errors	KIAA1211L	HGNC	ENSG00000196872				190	0	0	143	34	19.209
JAG1	0	genome.wustl.edu	37	20	10622291	10622291	+	Silent	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	20	10622291	10622291	G	A	SNP	JAG1	ENST00000254958	human	ensembl	74_37	-1	known	silent	c.2733	p.C911	1.000	smart_VWC_out,smart_VWF_C	pfam_EG-like_dom,pfam_Notch_ligand_N,pfam_DSL,pfam_EGF_extracell,pfam_EGF-like_Ca-bd_dom,smart_DSL,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_VWC_out,smart_VWF_C,pfscan_DSL,pfscan_EG-like_dom	-	no_errors	JAG1	HGNC	ENSG00000101384				119	0	0	68	5	6.84932
ENSG00000270408	0	genome.wustl.edu	37	20	10626776	10626776	+	RNA	SNP	A	A	G			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	20	10626776	10626776	A	G	SNP	ENSG00000270408	ENST00000488480	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	JAG1	Clone_based_vega_gene	ENSG00000270408				41	0	0	26	8	23.5294
SEL1L2	0	genome.wustl.edu	37	20	13839964	13839964	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	20	13839964	13839964	C	T	SNP	SEL1L2	ENST00000284951	human	ensembl	74_37	-1	known	missense	c.1762	p.A588T	1.000	pfam_Sel1-like,smart_Sel1-like	pfam_Sel1-like,smart_Sel1-like	-	no_errors	SEL1L2	HGNC	ENSG00000101251				48	0	0	25	16	39.0244
FLRT3	0	genome.wustl.edu	37	20	14308143	14308143	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	20	14308143	14308143	C	T	SNP	FLRT3	ENST00000341420	human	ensembl	74_37	-1	known	missense	c.10	p.A4T	0.997	NULL	pfam_Leu-rich_rpt,superfamily_Fibronectin_type3,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,pfscan_Fibronectin_type3	-	no_errors	FLRT3	HGNC	ENSG00000125848				69	0	0	42	8	16
SYNDIG1	0	genome.wustl.edu	37	20	24524024	24524024	+	Silent	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	20	24524024	24524024	C	T	SNP	SYNDIG1	ENST00000376862	human	ensembl	74_37	+1	known	silent	c.291	p.G97	0.007	NULL	pfam_CD225/Dispanin_fam	-	no_errors	SYNDIG1	HGNC	ENSG00000101463				163	0	0	98	29	22.8346
ZNF343	0	genome.wustl.edu	37	20	2465000	2465000	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	20	2465000	2465000	T	G	SNP	ZNF343	ENST00000278772	human	ensembl	74_37	-1	known	missense	c.607	p.S203R	0.055	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF343	HGNC	ENSG00000088876				191	0	0	137	29	17.4699
ASXL1	0	genome.wustl.edu	37	20	31023213	31023213	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	20	31023213	31023213	C	T	SNP	ASXL1	ENST00000375687	human	ensembl	74_37	+1	known	missense	c.2698	p.P900S	0.001	NULL	NULL	-	no_errors	ASXL1	HGNC	ENSG00000171456				194	1	0.512821	113	37	24.6667
DNMT3B	0	genome.wustl.edu	37	20	31375119	31375119	+	Silent	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	20	31375119	31375119	C	T	SNP	DNMT3B	ENST00000328111	human	ensembl	74_37	+1	known	silent	c.516	p.D172	0.336	NULL	pfam_PWWP_dom,pfam_C5_MeTfrase,superfamily_Znf_FYVE_PHD,smart_PWWP_dom,pfscan_PWWP_dom	-	no_errors	DNMT3B	HGNC	ENSG00000088305				228	0	0	160	28	14.8936
BPIFA2	0	genome.wustl.edu	37	20	31756984	31756984	+	Silent	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	20	31756984	31756984	C	T	SNP	BPIFA2	ENST00000253362	human	ensembl	74_37	+1	known	silent	c.33	p.C11	0.133	NULL	pfam_Lipid-bd_serum_glycop_N,superfamily_Bactericidal_perm-incr_a/b_dom	-	no_errors	BPIFA2	HGNC	ENSG00000131050				275	0	0	155	40	20.5128
ZNF341	0	genome.wustl.edu	37	20	32328795	32328795	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	20	32328795	32328795	C	T	SNP	ZNF341	ENST00000375200	human	ensembl	74_37	+1	known	missense	c.119	p.A40V	0.008	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF341	HGNC	ENSG00000131061				78	0	0	59	12	16.9014
AHCY	0	genome.wustl.edu	37	20	32878577	32878577	+	Silent	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	20	32878577	32878577	G	A	SNP	AHCY	ENST00000217426	human	ensembl	74_37	-1	known	silent	c.726	p.T242	0.001	pfam_Adenosylhomocysteinase,pfam_Ado_hCys_hydrolase_NAD-bd,pfam_D-isomer_2_OHA_DH_NAD-bd,pfam_IlvN,pirsf_Adenosylhomocysteinase,tigrfam_Adenosylhomocysteinase	pfam_Adenosylhomocysteinase,pfam_Ado_hCys_hydrolase_NAD-bd,pfam_D-isomer_2_OHA_DH_NAD-bd,pfam_IlvN,pirsf_Adenosylhomocysteinase,tigrfam_Adenosylhomocysteinase	-	no_errors	AHCY	HGNC	ENSG00000101444				282	0	0	202	37	15.4812
DLGAP4	0	genome.wustl.edu	37	20	35060160	35060160	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	20	35060160	35060160	G	A	SNP	DLGAP4	ENST00000339266	human	ensembl	74_37	+1	known	missense	c.40	p.D14N	1.000	NULL	pfam_GKAP	-	no_errors	DLGAP4	HGNC	ENSG00000080845				104	0	0	59	19	24.359
RPN2	0	genome.wustl.edu	37	20	35852284	35852284	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	20	35852284	35852284	A	G	SNP	RPN2	ENST00000237530	human	ensembl	74_37	+1	known	missense	c.1096	p.R366G	1.000	pfam_Swp1	pfam_Swp1	-	no_errors	RPN2	HGNC	ENSG00000118705				106	0	0	54	12	18.1818
TTI1	0	genome.wustl.edu	37	20	36640052	36640052	+	Silent	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	20	36640052	36640052	G	A	SNP	TTI1	ENST00000373447	human	ensembl	74_37	-1	known	silent	c.2167	p.L723	0.995	superfamily_ARM-type_fold,pirsf_UCP005250	superfamily_ARM-type_fold,pirsf_UCP005250	-	no_errors	TTI1	HGNC	ENSG00000101407				114	0	0	44	10	18.5185
ZHX3	0	genome.wustl.edu	37	20	39831909	39831909	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	20	39831909	39831909	G	A	SNP	ZHX3	ENST00000309060	human	ensembl	74_37	-1	known	missense	c.1648	p.R550W	1.000	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeobox_dom,pfscan_Homeobox_dom	-	no_errors	ZHX3	HGNC	ENSG00000174306				141	0	0	82	30	26.7857
RBCK1	0	genome.wustl.edu	37	20	409197	409197	+	Silent	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	20	409197	409197	C	T	SNP	RBCK1	ENST00000356286	human	ensembl	74_37	+1	known	silent	c.1272	p.N424	0.787	NULL	pfam_Znf_C6HC,pfam_Znf_RanBP2,smart_Znf_RanBP2,smart_Znf_RING,pfscan_Znf_RanBP2,pfscan_Znf_RING,pfscan_Ubiquitin_supergroup	-	no_errors	RBCK1	HGNC	ENSG00000125826				30	0	0	27	3	10
PTPRT	0	genome.wustl.edu	37	20	41101110	41101110	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	20	41101110	41101110	G	A	SNP	PTPRT	ENST00000373198	human	ensembl	74_37	-1	known	missense	c.1246	p.R416C	1.000	superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_MAM_dom,pfam_Fibronectin_type3,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_MAM_dom,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_MAM_dom,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like_dom,prints_Tyr_Pase_rcpt/non-rcpt,prints_MAM_dom	-	no_errors	PTPRT	HGNC	ENSG00000196090				101	0	0	62	8	11.4286
ADA	0	genome.wustl.edu	37	20	43255112	43255112	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	20	43255112	43255112	G	T	SNP	ADA	ENST00000372874	human	ensembl	74_37	-1	known	missense	c.347	p.P116H	1.000	pfam_A/AMP_deaminase_dom,tigrfam_Ado/ade_deaminase	pfam_A/AMP_deaminase_dom,tigrfam_Ado/ade_deaminase	-	no_errors	ADA	HGNC	ENSG00000196839				96	0	0	79	13	14.1304
MMP9	0	genome.wustl.edu	37	20	44639209	44639209	+	Silent	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	20	44639209	44639209	G	A	SNP	MMP9	ENST00000372330	human	ensembl	74_37	+1	known	silent	c.459	p.P153	0.132	pfam_Pept_M10_metallopeptidase,smart_Peptidase_Metallo,prints_Pept_M10A	pfam_Pept_M10_metallopeptidase,pfam_FN_type2_col-bd,pfam_Hemopexin-like_repeat,pfam_PT,pfam_Peptidoglycan-bd-like,superfamily_Hemopexin-like_dom,superfamily_Kringle-like,superfamily_Peptidoglycan-bd-like,smart_Peptidase_Metallo,smart_FN_type2_col-bd,smart_Hemopexin-like_repeat,pfscan_FN_type2_col-bd,prints_Pept_M10A	-	no_errors	MMP9	HGNC	ENSG00000100985				42	0	0	28	7	20
CDH22	0	genome.wustl.edu	37	20	44869687	44869687	+	Silent	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	20	44869687	44869687	G	A	SNP	CDH22	ENST00000372262	human	ensembl	74_37	-1	known	silent	c.465	p.I155	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,superfamily_MFS_dom_general_subst_transpt,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH22	HGNC	ENSG00000149654				145	0	0	82	15	15.4639
ZNF334	0	genome.wustl.edu	37	20	45130930	45130930	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	20	45130930	45130930	C	T	SNP	ZNF334	ENST00000347606	human	ensembl	74_37	-1	known	missense	c.1048	p.E350K	0.001	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF334	HGNC	ENSG00000198185				380	0	0	223	77	25.6667
SLC9A8	0	genome.wustl.edu	37	20	48503378	48503378	+	Silent	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	20	48503378	48503378	C	T	SNP	SLC9A8	ENST00000417961	human	ensembl	74_37	+1	known	silent	c.1629	p.F543	0.971	NULL	pfam_Cation/H_exchanger,prints_NaH_exchanger,tigrfam_NaH_exchanger	-	no_errors	SLC9A8	HGNC	ENSG00000197818				128	0	0	90	30	25
KCNG1	0	genome.wustl.edu	37	20	49626608	49626608	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	20	49626608	49626608	C	T	SNP	KCNG1	ENST00000371571	human	ensembl	74_37	-1	known	missense	c.268	p.G90S	1.000	pfam_T1-type_BTB,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl_volt-dep_Kv9	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv6,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv3	-	no_errors	KCNG1	HGNC	ENSG00000026559				72	0	0	45	4	8.16327
TFAP2C	0	genome.wustl.edu	37	20	55206380	55206380	+	Silent	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	20	55206380	55206380	G	A	SNP	TFAP2C	ENST00000201031	human	ensembl	74_37	+1	known	silent	c.168	p.P56	0.061	NULL	pfam_TF_AP2_C,prints_TF_AP2_C,prints_TF_AP2_gamma	-	no_errors	TFAP2C	HGNC	ENSG00000087510				82	0	0	61	17	21.7949
APCDD1L	0	genome.wustl.edu	37	20	57042206	57042206	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	20	57042206	57042206	G	A	SNP	APCDD1L	ENST00000439429	human	ensembl	74_37	-1	known	missense	c.730	p.H244Y	0.996	NULL	NULL	-	no_errors	APCDD1L	HGNC	ENSG00000198768				70	0	0	48	14	22.5806
TAF4	0	genome.wustl.edu	37	20	60585189	60585189	+	Silent	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	20	60585189	60585189	C	T	SNP	TAF4	ENST00000252996	human	ensembl	74_37	-1	known	silent	c.1674	p.T558	0.052	NULL	pfam_TAF4,pfam_TAFH_NHR1,superfamily_Histone-fold,smart_TAFH_NHR1,pfscan_TAFH_NHR1	-	no_errors	TAF4	HGNC	ENSG00000130699				107	0	0	65	10	13.3333
SLCO4A1	0	genome.wustl.edu	37	20	61291766	61291766	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	20	61291766	61291766	C	T	SNP	SLCO4A1	ENST00000217159	human	ensembl	74_37	+1	known	missense	c.890	p.T297M	0.995	pfam_OA_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_OA_transporter	pfam_OA_transporter,pfam_MFS,pfam_Kazal_dom,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_OA_transporter	-	no_errors	SLCO4A1	HGNC	ENSG00000101187				71	0	0	36	14	28
DIDO1	0	genome.wustl.edu	37	20	61528133	61528133	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	20	61528133	61528133	C	T	SNP	DIDO1	ENST00000266070	human	ensembl	74_37	-1	known	missense	c.1804	p.A602T	0.000	NULL	pfam_TFIIS_cen_dom,pfam_SPOC_C,pfam_Znf_PHD-finger,superfamily_TFIIS_cen_dom,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_TFS2M,pfscan_Znf_PHD-finger	-	no_errors	DIDO1	HGNC	ENSG00000101191				185	1	0.537634	132	17	11.4094
COL20A1	0	genome.wustl.edu	37	20	61944531	61944531	+	Silent	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	20	61944531	61944531	C	T	SNP	COL20A1	ENST00000326996	human	ensembl	74_37	+1	known	silent	c.2139	p.Y713	0.170	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_VWF_A,pfam_Collagen,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_VWF_A,smart_Laminin_G,pfscan_Fibronectin_type3,pfscan_VWF_A	-	no_errors	COL20A1	HGNC	ENSG00000101203				59	0	0	21	6	22.2222
ZGPAT	0	genome.wustl.edu	37	20	62365068	62365068	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	20	62365068	62365068	C	T	SNP	ZGPAT	ENST00000328969	human	ensembl	74_37	+1	known	missense	c.848	p.T283M	0.000	NULL	pfam_G_patch_dom,smart_Znf_CCCH,smart_G_patch_dom,pfscan_G_patch_dom	-	no_errors	ZGPAT	HGNC	ENSG00000197114				166	0	0	123	33	21.1538
ZBTB46	0	genome.wustl.edu	37	20	62421359	62421359	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	20	62421359	62421359	A	G	SNP	ZBTB46	ENST00000245663	human	ensembl	74_37	-1	known	missense	c.752	p.V251A	0.000	NULL	pfam_BTB_POZ,pfam_DUF3342,pfam_Znf_C2H2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB46	HGNC	ENSG00000130584				95	0	0	59	4	6.34921
ANKRD20A11P	0	genome.wustl.edu	37	21	15352124	15352124	+	RNA	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	21	15352124	15352124	C	T	SNP	ANKRD20A11P	ENST00000344693	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.639	-	-	-	no_errors	ANKRD20A11P	HGNC	ENSG00000215559				43	0	0	24	6	20
BTG3	0	genome.wustl.edu	37	21	18966420	18966420	+	Silent	SNP	T	T	C			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	21	18966420	18966420	T	C	SNP	BTG3	ENST00000339775	human	ensembl	74_37	-1	known	silent	c.882	p.A294	1.000	NULL	pfam_Anti_prolifrtn,smart_Anti_prolifrtn,prints_Anti_prolifrtn	-	no_errors	BTG3	HGNC	ENSG00000154640				86	0	0	56	4	6.66667
NCAM2	0	genome.wustl.edu	37	21	22906922	22906922	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	21	22906922	22906922	G	T	SNP	NCAM2	ENST00000400546	human	ensembl	74_37	+1	known	nonsense	c.2347	p.E783*	1.000	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom,prints_Neural_cell_adh	-	no_errors	NCAM2	HGNC	ENSG00000154654				65	0	0	55	7	11.2903
NCAM2	0	genome.wustl.edu	37	21	22906925	22906925	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	21	22906925	22906925	G	A	SNP	NCAM2	ENST00000400546	human	ensembl	74_37	+1	known	missense	c.2350	p.D784N	1.000	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom,prints_Neural_cell_adh	-	no_errors	NCAM2	HGNC	ENSG00000154654				66	0	0	53	7	11.6667
RWDD2B	0	genome.wustl.edu	37	21	30380587	30380587	+	Silent	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	21	30380587	30380587	C	T	SNP	RWDD2B	ENST00000493196	human	ensembl	74_37	-1	known	silent	c.336	p.P112	0.002	pfam_RWD-domain,superfamily_UBQ-conjugating_enzyme/RWD,smart_RWD-domain,pirsf_UCP038021_RWD,pfscan_RWD-domain	pfam_DUF1115,pfam_RWD-domain,superfamily_UBQ-conjugating_enzyme/RWD,smart_RWD-domain,pirsf_UCP038021_RWD,pfscan_RWD-domain	-	no_errors	RWDD2B	HGNC	ENSG00000156253				149	0	0	76	21	21.6495
BACH1	0	genome.wustl.edu	37	21	30701983	30701983	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	21	30701983	30701983	T	C	SNP	BACH1	ENST00000286800	human	ensembl	74_37	+1	known	missense	c.1745	p.I582T	1.000	pfam_bZIP,smart_bZIP,pfscan_bZIP	pfam_BTB_POZ,pfam_bZIP,superfamily_BTB/POZ_fold,superfamily_TF_DNA-bd,smart_BTB/POZ-like,smart_bZIP,pfscan_BTB/POZ-like,pfscan_bZIP	-	no_errors	BACH1	HGNC	ENSG00000156273				37	0	0	20	3	13.0435
SCAF4	0	genome.wustl.edu	37	21	33063217	33063217	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	21	33063217	33063217	C	A	SNP	SCAF4	ENST00000286835	human	ensembl	74_37	-1	known	missense	c.1778	p.W593L	1.000	NULL	pfam_RNA_pol_II-bd,pfam_RRM_dom,superfamily_ENTH_VHS,smart_CID_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	SCAF4	HGNC	ENSG00000156304				164	0	0	88	23	20.7207
IFNAR1	0	genome.wustl.edu	37	21	34697419	34697419	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	21	34697419	34697419	T	C	SNP	IFNAR1	ENST00000270139	human	ensembl	74_37	+1	known	missense	c.59	p.V20A	0.029	pirsf_Interferon_alpha/beta_rcpt-1	pfam_Interferon_alpha/beta_rcpt_bsu,superfamily_Fibronectin_type3,pirsf_Interferon_alpha/beta_rcpt-1	-	no_errors	IFNAR1	HGNC	ENSG00000142166				28	0	0	16	6	27.2727
IFNAR1	0	genome.wustl.edu	37	21	34713411	34713411	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	21	34713411	34713411	C	T	SNP	IFNAR1	ENST00000270139	human	ensembl	74_37	+1	known	missense	c.307	p.R103C	0.915	superfamily_Fibronectin_type3,pirsf_Interferon_alpha/beta_rcpt-1	pfam_Interferon_alpha/beta_rcpt_bsu,superfamily_Fibronectin_type3,pirsf_Interferon_alpha/beta_rcpt-1	-	no_errors	IFNAR1	HGNC	ENSG00000142166				92	0	0	67	16	19.2771
DOPEY2	0	genome.wustl.edu	37	21	37571453	37571453	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	21	37571453	37571453	T	A	SNP	DOPEY2	ENST00000399151	human	ensembl	74_37	+1	known	missense	c.224	p.L75Q	1.000	pfam_Dopey_N	pfam_Dopey_N	-	no_errors	DOPEY2	HGNC	ENSG00000142197				152	0	0	67	20	22.9885
DSCR10	0	genome.wustl.edu	37	21	39580610	39580610	+	RNA	SNP	A	A	G			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	21	39580610	39580610	A	G	SNP	DSCR10	ENST00000432141	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	DSCR10	HGNC	ENSG00000233316				246	0	0	152	41	21.2435
DSCAM	0	genome.wustl.edu	37	21	41725614	41725614	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	21	41725614	41725614	C	T	SNP	DSCAM	ENST00000400454	human	ensembl	74_37	-1	known	missense	c.712	p.A238T	1.000	pfam_Ig_I-set,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub2,smart_Ig_sub,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	DSCAM	HGNC	ENSG00000171587				49	0	0	34	10	22.7273
C2CD2	0	genome.wustl.edu	37	21	43342111	43342111	+	Silent	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	21	43342111	43342111	G	A	SNP	C2CD2	ENST00000380486	human	ensembl	74_37	-1	known	silent	c.462	p.Y154	0.000	NULL	pfam_C2_dom,superfamily_C2_dom	-	no_errors	C2CD2	HGNC	ENSG00000157617				88	0	0	57	13	18.5714
POFUT2	0	genome.wustl.edu	37	21	46686228	46686228	+	RNA	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	21	46686228	46686228	C	T	SNP	POFUT2	ENST00000485190	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.008	-	-	-	no_errors	POFUT2	HGNC	ENSG00000186866				56	0	0	36	10	21.7391
POFUT2	0	genome.wustl.edu	37	21	46703350	46703350	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	21	46703350	46703350	G	A	SNP	POFUT2	ENST00000349485	human	ensembl	74_37	-1	known	missense	c.475	p.R159W	0.906	pfam_GDP-Fuc_O-FucTrfase	pfam_GDP-Fuc_O-FucTrfase,superfamily_DUF749	-	no_errors	POFUT2	HGNC	ENSG00000186866				420	0	0	245	82	25.0765
COL18A1	0	genome.wustl.edu	37	21	46896330	46896330	+	Silent	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	21	46896330	46896330	C	T	SNP	COL18A1	ENST00000359759	human	ensembl	74_37	+1	known	silent	c.2109	p.G703	0.026	NULL	pfam_Collagenase_NC10/endostatin,pfam_DUF959_COL18_N,pfam_Collagen,pfam_Frizzled_dom,superfamily_C-type_lectin_fold,superfamily_ConA-like_lec_gl_sf,superfamily_Frizzled_dom,smart_Frizzled_dom,smart_Laminin_G,pfscan_Frizzled_dom	-	no_errors	COL18A1	HGNC	ENSG00000182871				67	0	0	38	10	20.8333
COL6A2	0	genome.wustl.edu	37	21	47552032	47552032	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	21	47552032	47552032	C	T	SNP	COL6A2	ENST00000300527	human	ensembl	74_37	+1	known	missense	c.2626	p.R876C	0.998	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_VWF_A,pfam_Collagen,smart_VWF_A,pfscan_VWF_A	-	no_errors	COL6A2	HGNC	ENSG00000142173				12	0	0	8	5	38.4615
PCNT	0	genome.wustl.edu	37	21	47746486	47746486	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	21	47746486	47746486	G	T	SNP	PCNT	ENST00000359568	human	ensembl	74_37	+1	known	missense	c.250	p.G84W	0.054	NULL	pfam_PACT_domain	-	no_errors	PCNT	HGNC	ENSG00000160299				184	0	0	107	22	17.0543
TPTEP1	0	genome.wustl.edu	37	22	17119478	17119478	+	RNA	SNP	A	A	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	22	17119478	17119478	A	T	SNP	TPTEP1	ENST00000383140	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	TPTEP1	HGNC	ENSG00000100181				83	0	0	44	10	18.5185
MICAL3	0	genome.wustl.edu	37	22	18305761	18305761	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	22	18305761	18305761	C	T	SNP	MICAL3	ENST00000441493	human	ensembl	74_37	-1	known	missense	c.3259	p.A1087T	1.000	NULL	pfam_DUF3585,pfam_CH-domain,pfam_CAMSAP_CH,pfam_Znf_LIM,pfam_mOase_FAD-bd,superfamily_CH-domain,smart_CH-domain,smart_Znf_LIM,pfscan_CH-domain,pfscan_Znf_LIM,prints_Rng_hydrolase-like	-	no_errors	MICAL3	HGNC	ENSG00000243156				74	0	0	52	17	24.6377
HIRA	0	genome.wustl.edu	37	22	19319037	19319037	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	22	19319037	19319037	T	C	SNP	HIRA	ENST00000263208	human	ensembl	74_37	-1	known	missense	c.2980	p.I994V	1.000	NULL	pfam_Hira,pfam_WD40_repeat,pfam_HIRA_B_motif,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	HIRA	HGNC	ENSG00000100084				123	0	0	62	19	23.4568
HIRA	0	genome.wustl.edu	37	22	19371200	19371200	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	22	19371200	19371200	C	T	SNP	HIRA	ENST00000263208	human	ensembl	74_37	-1	known	missense	c.1358	p.R453Q	1.000	pfam_HIRA_B_motif	pfam_Hira,pfam_WD40_repeat,pfam_HIRA_B_motif,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	HIRA	HGNC	ENSG00000100084				132	0	0	96	36	27.2727
TXNRD2	0	genome.wustl.edu	37	22	19868175	19868175	+	Silent	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	22	19868175	19868175	G	A	SNP	TXNRD2	ENST00000535882	human	ensembl	74_37	-1	known	silent	c.1149	p.G383	0.002	tigrfam_Thioredoxin/glutathione_Rdtase	pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,pfam_Pyr_nucl-diS_OxRdtase_dimer,pfam_Pyr_OxRdtase_NAD-bd_dom,pfam_FAD_bind_dom,pfam_GIDA-rel,superfamily_FAD/NAD-linked_Rdtase_dimer,prints_FAD_pyr_nucl-diS_OxRdtase,prints_Hg_reductase,tigrfam_Thioredoxin/glutathione_Rdtase	-	no_errors	TXNRD2	HGNC	ENSG00000184470				85	0	0	37	9	19.5652
HIC2	0	genome.wustl.edu	37	22	21799992	21799992	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	22	21799992	21799992	G	A	SNP	HIC2	ENST00000407464	human	ensembl	74_37	+1	known	missense	c.808	p.A270T	0.278	NULL	pfam_BTB_POZ,pfam_Znf_C2H2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	HIC2	HGNC	ENSG00000169635				162	0	0	104	29	21.8045
ZNF70	0	genome.wustl.edu	37	22	24086656	24086656	+	Silent	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	22	24086656	24086656	G	A	SNP	ZNF70	ENST00000341976	human	ensembl	74_37	-1	known	silent	c.672	p.Y224	0.104	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF70	HGNC	ENSG00000187792				126	0	0	83	15	15.3061
ADRBK2	0	genome.wustl.edu	37	22	26117303	26117303	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	22	26117303	26117303	A	T	SNP	ADRBK2	ENST00000324198	human	ensembl	74_37	+1	known	missense	c.1844	p.K615I	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_RGS_dom,pfam_Pleckstrin_homology,superfamily_Kinase-like_dom,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal_superfam,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Regulat_G_prot_signal_superfam,pfscan_Prot_kinase_dom,prints_GPCR_kinase	-	no_errors	ADRBK2	HGNC	ENSG00000100077				107	0	0	76	10	11.6279
TFIP11	0	genome.wustl.edu	37	22	26888055	26888055	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	22	26888055	26888055	C	T	SNP	TFIP11	ENST00000405938	human	ensembl	74_37	-1	known	missense	c.2438	p.R813Q	1.000	NULL	pfam_GCFC_dom,pfam_TIP_N,pfam_G_patch_dom,smart_G_patch_dom,pfscan_G_patch_dom	-	no_errors	TFIP11	HGNC	ENSG00000100109				41	0	0	31	8	20.5128
CRYBB1	0	genome.wustl.edu	37	22	26997907	26997907	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	22	26997907	26997907	C	T	SNP	CRYBB1	ENST00000215939	human	ensembl	74_37	-1	known	missense	c.511	p.A171T	0.994	pfam_Beta/gamma_crystallin,superfamily_G_crystallin-rel,smart_Beta/gamma_crystallin,pfscan_Beta/gamma_crystallin	pfam_Beta/gamma_crystallin,superfamily_G_crystallin-rel,smart_Beta/gamma_crystallin,pfscan_Beta/gamma_crystallin,prints_Beta/gamma_crystallin	-	no_errors	CRYBB1	HGNC	ENSG00000100122				105	0	0	53	25	32.0513
EMID1	0	genome.wustl.edu	37	22	29654828	29654828	+	Silent	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	22	29654828	29654828	G	A	SNP	EMID1	ENST00000334018	human	ensembl	74_37	+1	known	silent	c.1227	p.A409	1.000	NULL	pfam_Collagen,pfam_EMI_domain,pfscan_EMI_domain	-	no_errors	EMID1	HGNC	ENSG00000186998				133	1	0.746269	87	14	13.8614
SEC14L4	0	genome.wustl.edu	37	22	30888481	30888481	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	22	30888481	30888481	C	A	SNP	SEC14L4	ENST00000255858	human	ensembl	74_37	-1	known	missense	c.644	p.R215M	0.928	pfam_CRAL-TRIO_dom,superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom,prints_CRAL-bd_toc_tran	pfam_CRAL-TRIO_dom,pfam_CRAL/TRIO_N_dom,superfamily_CRAL-TRIO_dom,superfamily_GOLD,superfamily_CRAL/TRIO_N_dom,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom,pfscan_GOLD,prints_CRAL-bd_toc_tran	-	no_errors	SEC14L4	HGNC	ENSG00000133488				63	0	0	50	8	13.7931
SMTN	0	genome.wustl.edu	37	22	31487265	31487265	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	22	31487265	31487265	G	T	SNP	SMTN	ENST00000347557	human	ensembl	74_37	+1	known	missense	c.1256	p.R419L	1.000	NULL	pfam_Smoothelin,pfam_CH-domain,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	-	no_errors	SMTN	HGNC	ENSG00000183963				18	0	0	10	4	28.5714
SFI1	0	genome.wustl.edu	37	22	32007153	32007153	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	22	32007153	32007153	G	A	SNP	SFI1	ENST00000400288	human	ensembl	74_37	+1	known	missense	c.2279	p.R760H	0.007	NULL	superfamily_Cyclin-like	-	no_errors	SFI1	HGNC	ENSG00000198089				149	0	0	92	27	22.6891
APOL3	0	genome.wustl.edu	37	22	36537739	36537739	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	22	36537739	36537739	C	T	SNP	APOL3	ENST00000349314	human	ensembl	74_37	-1	known	missense	c.718	p.V240M	0.068	pfam_ApoL	pfam_ApoL	-	no_errors	APOL3	HGNC	ENSG00000128284				76	0	0	50	15	23.0769
TEX33	0	genome.wustl.edu	37	22	37387547	37387547	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	22	37387547	37387547	C	T	SNP	TEX33	ENST00000381821	human	ensembl	74_37	-1	known	nonsense	c.720	p.W240*	1.000	NULL	NULL	-	no_errors	TEX33	HGNC	ENSG00000185264				267	1	0.373134	187	33	15
POLR2F	0	genome.wustl.edu	37	22	38363644	38363644	+	Silent	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	22	38363644	38363644	C	T	SNP	POLR2F	ENST00000442738	human	ensembl	74_37	+1	known	silent	c.306	p.I102	1.000	pfam_Pol_omega/K/RPB6,superfamily_Pol_omega/K/RPB6	pfam_Pol_omega/K/RPB6,superfamily_Pol_omega/K/RPB6	-	no_errors	POLR2F	HGNC	ENSG00000100142				130	0	0	78	27	25.7143
CYP2D6	0	genome.wustl.edu	37	22	42524899	42524899	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	22	42524899	42524899	C	T	SNP	CYP2D6	ENST00000360608	human	ensembl	74_37	-1	known	missense	c.553	p.V185M	1.000	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-I_CYP2D-like	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-I_CYP2D-like,prints_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_B	-	no_errors	CYP2D6	HGNC	ENSG00000100197				18	0	0	8	3	27.2727
MPPED1	0	genome.wustl.edu	37	22	43870822	43870822	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	22	43870822	43870822	C	T	SNP	MPPED1	ENST00000538182	human	ensembl	74_37	+1	known	missense	c.712	p.R238W	0.906	pfam_PEstase_dom	pfam_PEstase_dom	-	no_errors	MPPED1	HGNC	ENSG00000186732				92	0	0	44	18	29.0323
SMC1B	0	genome.wustl.edu	37	22	45755790	45755790	+	Silent	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	22	45755790	45755790	C	T	SNP	SMC1B	ENST00000357450	human	ensembl	74_37	-1	known	silent	c.2757	p.L919	1.000	pfam_RecF/RecN/SMC_N,superfamily_P-loop_NTPase,superfamily_t-SNARE	pfam_RecF/RecN/SMC_N,pfam_SMC_hinge,superfamily_P-loop_NTPase,superfamily_SMC_hinge,superfamily_t-SNARE,smart_SMC_hinge	-	no_errors	SMC1B	HGNC	ENSG00000077935				107	0	0	60	14	18.9189
SMC1B	0	genome.wustl.edu	37	22	45809346	45809346	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	22	45809346	45809346	C	T	SNP	SMC1B	ENST00000357450	human	ensembl	74_37	-1	known	missense	c.103	p.G35S	1.000	pfam_RecF/RecN/SMC_N,superfamily_P-loop_NTPase	pfam_RecF/RecN/SMC_N,pfam_SMC_hinge,superfamily_P-loop_NTPase,superfamily_SMC_hinge,superfamily_t-SNARE,smart_SMC_hinge	-	no_errors	SMC1B	HGNC	ENSG00000077935				27	0	0	13	4	23.5294
FBLN1	0	genome.wustl.edu	37	22	45996231	45996231	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	22	45996231	45996231	G	A	SNP	FBLN1	ENST00000327858	human	ensembl	74_37	+1	known	missense	c.2017	p.V673I	0.099	pirsf_Fibulin-1	pfam_EGF-like_Ca-bd_dom,pfam_Anaphylatoxin/fibulin,smart_Anaphylatoxin/fibulin,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pirsf_Fibulin-1,pfscan_Anaphylatoxin/fibulin,pfscan_EG-like_dom	-	no_errors	FBLN1	HGNC	ENSG00000077942				534	1	0.186916	390	98	20.082
PANX2	0	genome.wustl.edu	37	22	50615790	50615790	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	22	50615790	50615790	C	T	SNP	PANX2	ENST00000395842	human	ensembl	74_37	+1	known	missense	c.649	p.R217C	1.000	pfam_Innexin,pfscan_Innexin	pfam_Innexin,pfscan_Innexin	-	no_errors	PANX2	HGNC	ENSG00000073150				36	0	0	19	7	26.9231
MAPK12	0	genome.wustl.edu	37	22	50694077	50694077	+	Silent	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	22	50694077	50694077	C	T	SNP	MAPK12	ENST00000215659	human	ensembl	74_37	-1	known	silent	c.738	p.P246	0.000	pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_MAPK_p38	-	no_errors	MAPK12	HGNC	ENSG00000188130				216	0	0	120	27	18.3673
KLHDC7B	0	genome.wustl.edu	37	22	50987980	50987980	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	22	50987980	50987980	G	A	SNP	KLHDC7B	ENST00000395676	human	ensembl	74_37	+1	known	missense	c.1385	p.R462H	1.000	smart_Kelch_1	pfam_Kelch_1,smart_Kelch_1	-	no_errors	KLHDC7B	HGNC	ENSG00000130487				177	0	0	91	27	22.8814
IMPG2	0	genome.wustl.edu	37	3	100964716	100964716	+	Silent	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	3	100964716	100964716	C	T	SNP	IMPG2	ENST00000193391	human	ensembl	74_37	-1	known	silent	c.1473	p.P491	1.000	NULL	pfam_SEA_dom,smart_SEA_dom,pfscan_EG-like_dom,pfscan_SEA_dom	-	no_errors	IMPG2	HGNC	ENSG00000081148				236	0	0	207	52	20.0772
DPPA4	0	genome.wustl.edu	37	3	109049450	109049450	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	3	109049450	109049450	C	A	SNP	DPPA4	ENST00000335658	human	ensembl	74_37	-1	known	missense	c.600	p.E200D	0.001	NULL	NULL	-	no_errors	DPPA4	HGNC	ENSG00000121570				173	0	0	105	51	32.6923
PHLDB2	0	genome.wustl.edu	37	3	111604188	111604188	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	3	111604188	111604188	C	T	SNP	PHLDB2	ENST00000393925	human	ensembl	74_37	+1	known	missense	c.1264	p.R422C	0.807	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	PHLDB2	HGNC	ENSG00000144824				177	0	0	119	63	34.6154
SPICE1	0	genome.wustl.edu	37	3	113212908	113212908	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	3	113212908	113212908	G	A	SNP	SPICE1	ENST00000295872	human	ensembl	74_37	-1	known	missense	c.373	p.R125C	0.982	NULL	NULL	-	no_errors	SPICE1	HGNC	ENSG00000163611				74	0	0	69	11	13.75
ZBTB20	0	genome.wustl.edu	37	3	114058088	114058088	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	3	114058088	114058088	A	G	SNP	ZBTB20	ENST00000474710	human	ensembl	74_37	-1	known	missense	c.1990	p.C664R	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_BTB_POZ,pfam_Znf_C2H2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB20	HGNC	ENSG00000181722				263	1	0.378788	202	43	17.551
SLC15A2	0	genome.wustl.edu	37	3	121658261	121658261	+	Silent	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	3	121658261	121658261	G	A	SNP	SLC15A2	ENST00000489711	human	ensembl	74_37	+1	known	silent	c.1827	p.A609	0.997	superfamily_MFS_dom_general_subst_transpt,tigrfam_Oligopep_transport	pfam_POT_fam,superfamily_MFS_dom_general_subst_transpt,tigrfam_Oligopep_transport	-	no_errors	SLC15A2	HGNC	ENSG00000163406				196	0	0	106	73	40.7821
MYLK	0	genome.wustl.edu	37	3	123419170	123419170	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	3	123419170	123419170	G	A	SNP	MYLK	ENST00000360304	human	ensembl	74_37	-1	known	missense	c.3145	p.P1049S	0.001	NULL	pfam_Ig_I-set,pfam_Prot_kinase_dom,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	MYLK	HGNC	ENSG00000065534				537	0	0	345	212	38.061
ROPN1B	0	genome.wustl.edu	37	3	125701223	125701223	+	Silent	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	3	125701223	125701223	C	T	SNP	ROPN1B	ENST00000251776	human	ensembl	74_37	+1	known	silent	c.507	p.A169	0.922	NULL	superfamily_cAMP_dep_PK_reg_su_I/II_a/b	-	no_errors	ROPN1B	HGNC	ENSG00000114547				176	0	0	126	25	16.5563
ABTB1	0	genome.wustl.edu	37	3	127396654	127396654	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	3	127396654	127396654	G	A	SNP	ABTB1	ENST00000232744	human	ensembl	74_37	+1	known	missense	c.997	p.V333M	1.000	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like	pfam_BTB_POZ,pfam_Ankyrin_rpt,superfamily_BTB/POZ_fold,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_BTB/POZ-like,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_BTB/POZ-like	-	no_errors	ABTB1	HGNC	ENSG00000114626				23	0	0	20	9	31.0345
ACAD11	0	genome.wustl.edu	37	3	132349315	132349315	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	3	132349315	132349315	G	A	SNP	ACAD11	ENST00000264990	human	ensembl	74_37	-1	known	missense	c.929	p.A310V	1.000	superfamily_Kinase-like_dom	pfam_Aminoglycoside_PTrfase,pfam_AcylCo_DH/oxidase_C,pfam_Acyl-CoA_Oxase/DH_cen-dom,pfam_Acyl-CoA_DH_2_C,pfam_AcylCoA_DH/ox_N,superfamily_AcylCoA_DH/oxidase_NM_dom,superfamily_AcylCo_DH/oxidase_C,superfamily_Kinase-like_dom	-	no_errors	ACAD11	HGNC	ENSG00000240303				128	0	0	77	34	30.6306
UBA5	0	genome.wustl.edu	37	3	132387690	132387690	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	3	132387690	132387690	A	T	SNP	UBA5	ENST00000356232	human	ensembl	74_37	+1	known	missense	c.326	p.E109V	1.000	pfam_ThiF_NAD_FAD-bd,superfamily_Molybdenum_cofac_synth_MoeB	pfam_ThiF_NAD_FAD-bd,superfamily_Molybdenum_cofac_synth_MoeB	-	no_errors	UBA5	HGNC	ENSG00000081307				118	0	0	91	6	6.18557
NUP210	0	genome.wustl.edu	37	3	13367333	13367333	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	3	13367333	13367333	A	G	SNP	NUP210	ENST00000254508	human	ensembl	74_37	-1	known	missense	c.4606	p.Y1536H	0.986	superfamily_Invasin/intimin_cell_adhesion	pfam_Big_2,superfamily_Invasin/intimin_cell_adhesion,superfamily_Cadherin-like,smart_Big_2	-	no_errors	NUP210	HGNC	ENSG00000132182				188	0	0	173	28	13.9303
CNTN6	0	genome.wustl.edu	37	3	1339624	1339624	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	3	1339624	1339624	T	C	SNP	CNTN6	ENST00000350110	human	ensembl	74_37	+1	known	missense	c.710	p.I237T	0.728	pfam_Ig_I-set,smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	CNTN6	HGNC	ENSG00000134115				165	0	0	133	7	5
DBR1	0	genome.wustl.edu	37	3	137880841	137880841	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	3	137880841	137880841	G	A	SNP	DBR1	ENST00000260803	human	ensembl	74_37	-1	known	missense	c.1525	p.P509S	0.000	NULL	pfam_DBR1_C,pfam_PEstase_dom	-	no_errors	DBR1	HGNC	ENSG00000138231				302	1	0.330033	189	87	31.5217
GRIP2	0	genome.wustl.edu	37	3	14538015	14538015	+	RNA	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	3	14538015	14538015	G	A	SNP	GRIP2	ENST00000273083	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.023	-	-	-	no_errors	GRIP2	HGNC	ENSG00000144596				29	0	0	24	11	31.4286
MED12L	0	genome.wustl.edu	37	3	150883689	150883689	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	3	150883689	150883689	G	A	SNP	MED12L	ENST00000474524	human	ensembl	74_37	+1	known	missense	c.1414	p.D472N	1.000	pfam_Mediator_Med12_LCEWAV	pfam_Mediator_Med12_LCEWAV,pfam_Mediator_Med12,pfam_Mediator_Med12_catenin-bd	-	no_errors	MED12L	HGNC	ENSG00000144893				226	0	0	184	11	5.64103
IGSF10	0	genome.wustl.edu	37	3	151161469	151161469	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	3	151161469	151161469	T	C	SNP	IGSF10	ENST00000282466	human	ensembl	74_37	-1	known	missense	c.5266	p.T1756A	1.000	pfam_Ig_I-set,smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	-	no_errors	IGSF10	HGNC	ENSG00000152580				116	0	0	74	33	30.8411
PTX3	0	genome.wustl.edu	37	3	157154774	157154774	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	3	157154774	157154774	G	A	SNP	PTX3	ENST00000295927	human	ensembl	74_37	+1	known	missense	c.52	p.E18K	0.175	NULL	pfam_Pentaxin,superfamily_ConA-like_lec_gl_sf,smart_Pentaxin,smart_LamG-like,prints_Pentaxin	-	no_errors	PTX3	HGNC	ENSG00000163661				250	0	0	177	40	18.4332
EIF5A2	0	genome.wustl.edu	37	3	170611132	170611132	+	RNA	SNP	A	A	G			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	3	170611132	170611132	A	G	SNP	EIF5A2	ENST00000460117	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.003	-	-	-	no_errors	EIF5A2	HGNC	ENSG00000163577				95	0	0	61	30	32.967
GHSR	0	genome.wustl.edu	37	3	172165336	172165336	+	Nonstop_Mutation	SNP	A	A	G			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	3	172165336	172165336	A	G	SNP	GHSR	ENST00000427970	human	ensembl	74_37	-1	known	nonstop	c.868	p.*290R	0.000	NULL	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_7TM,prints_GHS-R,prints_GPCR_Rhodpsn	-	no_errors	GHSR	HGNC	ENSG00000121853				113	0	0	86	23	21.1009
TBL1XR1	0	genome.wustl.edu	37	3	176756141	176756141	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	3	176756141	176756141	A	G	SNP	TBL1XR1	ENST00000430069	human	ensembl	74_37	-1	known	missense	c.1007	p.L336S	1.000	superfamily_WD40_repeat_dom,pfscan_WD40_repeat_dom	pfam_WD40_repeat,pfam_LisH_dimerisation_subgr,superfamily_WD40_repeat_dom,smart_LisH_dimerisation,smart_WD40_repeat,pfscan_LisH_dimerisation,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	TBL1XR1	HGNC	ENSG00000177565				19	0	0	5	3	37.5
ECE2	0	genome.wustl.edu	37	3	184005700	184005700	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	3	184005700	184005700	G	A	SNP	ECE2	ENST00000402825	human	ensembl	74_37	+1	known	missense	c.1693	p.V565M	1.000	pfam_Peptidase_M13_N	pfam_Peptidase_M13_N,pfam_Peptidase_M13_C,pfam_Methyltransf_11,prints_Peptidase_M13_C	-	no_errors	ECE2	HGNC	ENSG00000145194				140	0	0	80	48	37.5
TRA2B	0	genome.wustl.edu	37	3	185641637	185641637	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	3	185641637	185641637	G	A	SNP	TRA2B	ENST00000453386	human	ensembl	74_37	-1	known	missense	c.469	p.R157C	1.000	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	TRA2B	HGNC	ENSG00000136527				140	0	0	108	27	20
KNG1	0	genome.wustl.edu	37	3	186456933	186456933	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	3	186456933	186456933	A	G	SNP	KNG1	ENST00000265023	human	ensembl	74_37	+1	known	missense	c.976	p.T326A	0.998	pfam_Prot_inh_cystat,smart_Prot_inh_cystat	pfam_Prot_inh_cystat,smart_Prot_inh_cystat,prints_Kininogen	-	no_errors	KNG1	HGNC	ENSG00000113889				88	0	0	57	14	19.7183
CPN2	0	genome.wustl.edu	37	3	194062974	194062974	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	3	194062974	194062974	T	C	SNP	CPN2	ENST00000323830	human	ensembl	74_37	-1	known	missense	c.458	p.Q153R	0.508	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	CPN2	HGNC	ENSG00000178772				111	0	0	67	17	20.2381
FAM43A	0	genome.wustl.edu	37	3	194408798	194408798	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	3	194408798	194408798	G	A	SNP	FAM43A	ENST00000329759	human	ensembl	74_37	+1	known	missense	c.1243	p.A415T	0.208	NULL	smart_PTB/PI_dom	-	no_errors	FAM43A	HGNC	ENSG00000185112				18	0	0	12	5	29.4118
NRROS	0	genome.wustl.edu	37	3	196387199	196387199	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	3	196387199	196387199	C	T	SNP	NRROS	ENST00000328557	human	ensembl	74_37	+1	known	missense	c.685	p.R229W	0.111	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	NRROS	HGNC	ENSG00000174004				103	0	0	59	36	37.8947
PAK2	0	genome.wustl.edu	37	3	196539089	196539089	+	Splice_Site	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	3	196539089	196539089	G	A	SNP	PAK2	ENST00000327134	human	ensembl	74_37	+1	known	splice_site	c.774-1	e8-1	1.000	-	-	-	no_errors	PAK2	HGNC	ENSG00000180370				143	0	0	112	15	11.811
KIAA0226	0	genome.wustl.edu	37	3	197444966	197444966	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	3	197444966	197444966	G	A	SNP	KIAA0226	ENST00000296343	human	ensembl	74_37	-1	known	missense	c.101	p.T34M	1.000	NULL	pfam_Run,smart_Run,pfscan_Run	-	no_errors	KIAA0226	HGNC	ENSG00000145016				90	0	0	99	7	6.60377
SGOL1	0	genome.wustl.edu	37	3	20216058	20216058	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	3	20216058	20216058	T	G	SNP	SGOL1	ENST00000263753	human	ensembl	74_37	-1	known	missense	c.965	p.Q322P	0.000	NULL	pfam_Shugoshin_N,pfam_Shugoshin_C	-	no_errors	SGOL1	HGNC	ENSG00000129810				55	0	0	27	19	41.3043
GPD1L	0	genome.wustl.edu	37	3	32200470	32200470	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	3	32200470	32200470	G	A	SNP	GPD1L	ENST00000282541	human	ensembl	74_37	+1	known	missense	c.721	p.A241T	1.000	pfam_G3P_DH_NAD-dep_C,superfamily_6-PGluconate_DH_C-like,pirsf_G3P_DH_NAD-dep,tigrfam_G3P_DH_NAD-dep_euk	pfam_G3P_DH_NAD-dep_C,pfam_G3P_DH_NAD-dep_N,superfamily_6-PGluconate_DH_C-like,pirsf_G3P_DH_NAD-dep,prints_G3P_DH_NAD-dep,tigrfam_G3P_DH_NAD-dep_euk	-	no_errors	GPD1L	HGNC	ENSG00000152642				137	1	0.724638	139	9	6.08108
PDCD6IP	0	genome.wustl.edu	37	3	33887074	33887074	+	Silent	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	3	33887074	33887074	C	T	SNP	PDCD6IP	ENST00000457054	human	ensembl	74_37	+1	known	silent	c.1650	p.G550	1.000	NULL	pfam_BRO1_dom,pfscan_BRO1_dom	-	no_errors	PDCD6IP	HGNC	ENSG00000170248				109	0	0	79	18	18.5567
TRANK1	0	genome.wustl.edu	37	3	36884133	36884133	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	3	36884133	36884133	C	T	SNP	TRANK1	ENST00000429976	human	ensembl	74_37	-1	known	missense	c.5128	p.A1710T	1.000	NULL	pfam_UvrD-like_ATP-bd,superfamily_P-loop_NTPase,superfamily_Ankyrin_rpt-contain_dom,smart_TPR_repeat,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_TPR-contain_dom	-	no_errors	TRANK1	HGNC	ENSG00000168016				45	0	0	22	4	15.3846
ITGA9	0	genome.wustl.edu	37	3	37574834	37574834	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	3	37574834	37574834	C	A	SNP	ITGA9	ENST00000264741	human	ensembl	74_37	+1	known	missense	c.1403	p.S468Y	1.000	pfam_Integrin_alpha-2,smart_Int_alpha_beta-p,prints_Integrin_alpha	pfam_Integrin_alpha-2,pfam_FG-GAP,smart_Int_alpha_beta-p,prints_Integrin_alpha	-	no_errors	ITGA9	HGNC	ENSG00000144668				104	0	0	65	17	20.7317
VILL	0	genome.wustl.edu	37	3	38048186	38048186	+	Silent	SNP	A	A	C			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	3	38048186	38048186	A	C	SNP	VILL	ENST00000283713	human	ensembl	74_37	+1	known	silent	c.2452	p.R818	0.986	superfamily_Villin_headpiece,pfscan_Villin_headpiece	pfam_Gelsolin_dom,pfam_Villin_headpiece,superfamily_Villin_headpiece,smart_Villin/Gelsolin,smart_Villin_headpiece,pfscan_Villin_headpiece,prints_Villin/Gelsolin	-	no_errors	VILL	HGNC	ENSG00000136059				109	0	0	59	31	34.4444
SCN10A	0	genome.wustl.edu	37	3	38763831	38763831	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	3	38763831	38763831	C	T	SNP	SCN10A	ENST00000449082	human	ensembl	74_37	-1	known	missense	c.3425	p.R1142H	1.000	pfam_Na_trans_assoc	pfam_Ion_trans_dom,pfam_Na_trans_assoc,pfam_PKD1_2_channel,prints_Na_channel_asu,prints_PKD_2	-	no_errors	SCN10A	HGNC	ENSG00000185313				165	0	0	119	24	16.7832
KLHL40	0	genome.wustl.edu	37	3	42727821	42727821	+	Silent	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	3	42727821	42727821	C	T	SNP	KLHL40	ENST00000287777	human	ensembl	74_37	+1	known	silent	c.711	p.R237	0.998	pfam_BACK,smart_BACK,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL40	HGNC	ENSG00000157119				31	0	0	18	14	43.75
CYP8B1	0	genome.wustl.edu	37	3	42916264	42916264	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	3	42916264	42916264	G	A	SNP	CYP8B1	ENST00000316161	human	ensembl	74_37	-1	known	missense	c.1045	p.R349W	0.176	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-IV	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_E_grp-I	-	no_errors	CYP8B1	HGNC	ENSG00000180432				84	0	0	65	30	31.5789
CHL1	0	genome.wustl.edu	37	3	447269	447269	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	3	447269	447269	G	A	SNP	CHL1	ENST00000256509	human	ensembl	74_37	+1	known	missense	c.3550	p.G1184R	1.000	NULL	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	CHL1	HGNC	ENSG00000134121				130	0	0	80	34	29.8246
LARS2	0	genome.wustl.edu	37	3	45527192	45527192	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	3	45527192	45527192	A	G	SNP	LARS2	ENST00000265537	human	ensembl	74_37	+1	known	missense	c.1027	p.T343A	1.000	superfamily_Val/Leu/Ile-tRNA-synth_edit,tigrfam_Leu-tRNA-ligase_bac/mito	pfam_aa-tRNA-synth_Ia,pfam_Methionyl/Leucyl_tRNA_Synth,pfam_V/L/I-tRNA-synth_anticodon-bd,superfamily_tRNAsynth_1a_anticodon-bd,superfamily_Val/Leu/Ile-tRNA-synth_edit,prints_Leu-tRNA-ligase_bac/mito,tigrfam_Leu-tRNA-ligase_bac/mito	-	no_errors	LARS2	HGNC	ENSG00000011376				346	0	0	217	120	35.6083
PRSS50	0	genome.wustl.edu	37	3	46754421	46754421	+	Silent	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	3	46754421	46754421	C	T	SNP	PRSS50	ENST00000315170	human	ensembl	74_37	-1	known	silent	c.891	p.A297	0.000	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1	pfam_Peptidase_S1,pfam_Peptidase_S1A_nudel,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	PRSS50	HGNC	ENSG00000206549				282	0	0	192	100	34.2466
PTPN23	0	genome.wustl.edu	37	3	47448823	47448823	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	3	47448823	47448823	G	A	SNP	PTPN23	ENST00000265562	human	ensembl	74_37	+1	known	missense	c.889	p.A297T	1.000	pfam_BRO1_dom,pfscan_BRO1_dom	pfam_BRO1_dom,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_BRO1_dom,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPN23	HGNC	ENSG00000076201				220	0	0	136	64	32
DHX30	0	genome.wustl.edu	37	3	47888228	47888228	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	3	47888228	47888228	G	A	SNP	DHX30	ENST00000445061	human	ensembl	74_37	+1	known	missense	c.1666	p.V556I	1.000	pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_Helicase-assoc_dom,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_DUF1605,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DHX30	HGNC	ENSG00000132153				68	0	0	49	20	28.9855
DHX30	0	genome.wustl.edu	37	3	47890951	47890951	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	3	47890951	47890951	G	A	SNP	DHX30	ENST00000445061	human	ensembl	74_37	+1	known	missense	c.3098	p.G1033D	1.000	pfam_DUF1605	pfam_Helicase-assoc_dom,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_DUF1605,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DHX30	HGNC	ENSG00000132153				91	0	0	74	27	26.7327
COL7A1	0	genome.wustl.edu	37	3	48605162	48605162	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	3	48605162	48605162	G	A	SNP	COL7A1	ENST00000328333	human	ensembl	74_37	-1	known	missense	c.7964	p.A2655V	0.990	pfam_Collagen	pfam_Collagen,pfam_Fibronectin_type3,pfam_VWF_A,pfam_Prot_inh_Kunz-m,superfamily_Fibronectin_type3,superfamily_Prot_inh_Kunz-m,smart_VWF_A,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_VWF_A,pfscan_Prot_inh_Kunz-m,prints_Prot_inh_Kunz-m	-	no_errors	COL7A1	HGNC	ENSG00000114270				302	0	0	283	26	8.41424
TMEM89	0	genome.wustl.edu	37	3	48658932	48658932	+	Silent	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	3	48658932	48658932	C	T	SNP	TMEM89	ENST00000330862	human	ensembl	74_37	-1	known	silent	c.258	p.L86	0.087	NULL	NULL	-	no_errors	TMEM89	HGNC	ENSG00000183396				42	0	0	51	11	17.7419
IP6K2	0	genome.wustl.edu	37	3	48732353	48732353	+	Silent	SNP	G	G	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	3	48732353	48732353	G	T	SNP	IP6K2	ENST00000433104	human	ensembl	74_37	-1	known	silent	c.372	p.P124	1.000	NULL	NULL	-	no_errors	IP6K2	HGNC	ENSG00000068745				12	0	0	7	2	22.2222
PRKAR2A	0	genome.wustl.edu	37	3	48789046	48789046	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	3	48789046	48789046	C	T	SNP	PRKAR2A	ENST00000265563	human	ensembl	74_37	-1	known	missense	c.1187	p.S396N	1.000	superfamily_cNMP-bd-like,pirsf_cAMP_dep_PK_reg_su	pfam_cNMP-bd_dom,pfam_cAMP_dep_PK_reg_su_I/II_a/b,superfamily_cNMP-bd-like,superfamily_cAMP_dep_PK_reg_su_I/II_a/b,smart_cAMP_dep_PK_reg_su_I/II_a/b,smart_cNMP-bd_dom,pirsf_cAMP_dep_PK_reg_su,pfscan_cNMP-bd_dom,prints_cAMP/cGMP_kin	-	no_errors	PRKAR2A	HGNC	ENSG00000114302				61	0	0	43	5	10.4167
USP19	0	genome.wustl.edu	37	3	49154769	49154769	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	3	49154769	49154769	A	C	SNP	USP19	ENST00000434032	human	ensembl	74_37	-1	novel	missense	c.632	p.L211R	0.080	superfamily_HSP20-like_chaperone	pfam_Peptidase_C19/C67,pfam_Znf_MYND,pfam_CS_dom,superfamily_HSP20-like_chaperone,pfscan_CS_dom,pfscan_Znf_MYND,pfscan_Peptidase_C19/C67	-	no_errors	USP19	HGNC	ENSG00000172046				69	0	0	68	4	5.55556
LAMB2	0	genome.wustl.edu	37	3	49160403	49160403	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	3	49160403	49160403	C	T	SNP	LAMB2	ENST00000305544	human	ensembl	74_37	-1	known	missense	c.4307	p.R1436H	1.000	NULL	pfam_EGF_laminin,pfam_Laminin_N,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,pfscan_Laminin_IV,pfscan_EGF_laminin,pfscan_Laminin_N	-	no_errors	LAMB2	HGNC	ENSG00000172037				51	0	0	35	7	16.6667
BSN	0	genome.wustl.edu	37	3	49693698	49693698	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	3	49693698	49693698	C	T	SNP	BSN	ENST00000296452	human	ensembl	74_37	+1	known	missense	c.6709	p.P2237S	1.000	NULL	pfam_Znf_piccolo,superfamily_Znf_FYVE_PHD	-	no_errors	BSN	HGNC	ENSG00000164061				81	0	0	82	11	11.828
RBM6	0	genome.wustl.edu	37	3	50106123	50106123	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	3	50106123	50106123	C	T	SNP	RBM6	ENST00000266022	human	ensembl	74_37	+1	known	nonsense	c.2944	p.Q982*	1.000	NULL	pfam_G_patch_dom,smart_RRM_dom,smart_G_patch_dom,pfscan_G_patch_dom,pfscan_RRM_dom	-	no_errors	RBM6	HGNC	ENSG00000004534				50	0	0	54	12	18.1818
SEMA3B	0	genome.wustl.edu	37	3	50313251	50313251	+	RNA	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	3	50313251	50313251	C	T	SNP	SEMA3B	ENST00000316347	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.044	-	-	-	no_errors	SEMA3B	HGNC	ENSG00000012171				53	0	0	29	19	39.5833
HYAL2	0	genome.wustl.edu	37	3	50357842	50357842	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	3	50357842	50357842	C	T	SNP	HYAL2	ENST00000357750	human	ensembl	74_37	-1	known	missense	c.79	p.A27T	0.015	pfam_Hyaluronidase,pirsf_Hyaluronidase	pfam_Hyaluronidase,superfamily_Glycoside_hydrolase_SF,pirsf_Hyaluronidase,prints_Hyaluronidase	-	no_errors	HYAL2	HGNC	ENSG00000068001				17	0	0	33	3	8.33333
DOCK3	0	genome.wustl.edu	37	3	51395259	51395259	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	3	51395259	51395259	T	G	SNP	DOCK3	ENST00000266037	human	ensembl	74_37	+1	known	missense	c.4754	p.L1585R	1.000	pfam_DOCK_C	pfam_DOCK_C,pfam_SH3_2,superfamily_SH3_domain,superfamily_ARM-type_fold,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	DOCK3	HGNC	ENSG00000088538				131	0	0	108	11	9.2437
GRM2	0	genome.wustl.edu	37	3	51752116	51752116	+	Silent	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	3	51752116	51752116	G	A	SNP	GRM2	ENST00000395052	human	ensembl	74_37	+1	known	silent	c.2607	p.T869	0.671	prints_GPCR_3_mtglu_rcpt_2,prints_GPCR_3_mtglu_rcpt_3	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_GPCR_3_9-Cys_dom,superfamily_Peripla_BP_I,pfscan_GPCR_3_C,prints_GPCR_3,prints_GPCR_3_mtglu_rcpt_2,prints_GPCR_3_mtglu_rcpt,prints_GPCR_3_mtglu_rcpt_3,prints_GPCR_3_GABA_rcpt_B	-	no_errors	GRM2	HGNC	ENSG00000164082				302	0	0	247	54	17.9402
PARP3	0	genome.wustl.edu	37	3	51979569	51979569	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	3	51979569	51979569	C	T	SNP	PARP3	ENST00000398755	human	ensembl	74_37	+1	known	missense	c.941	p.T314M	0.323	pfam_Poly(ADP-ribose)pol_reg_dom,superfamily_Poly(ADP-ribose)pol_reg_dom	pfam_Poly(ADP-ribose)pol_cat_dom,pfam_Poly(ADP-ribose)pol_reg_dom,pfam_WGR_domain,superfamily_Poly(ADP-ribose)pol_reg_dom,superfamily_WGR_domain,smart_WGR_domain,pfscan_Poly(ADP-ribose)pol_cat_dom,pfscan_Poly(ADP-ribose)pol_reg_dom	-	no_errors	PARP3	HGNC	ENSG00000041880				105	0	0	109	9	7.62712
DNAH1	0	genome.wustl.edu	37	3	52391956	52391956	+	Silent	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	3	52391956	52391956	G	A	SNP	DNAH1	ENST00000420323	human	ensembl	74_37	+1	known	silent	c.4023	p.S1341	0.421	pfam_Dynein_heavy_dom-2,superfamily_P-loop_NTPase	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase	-	no_errors	DNAH1	HGNC	ENSG00000114841				66	0	0	63	7	10
PRKCD	0	genome.wustl.edu	37	3	53220294	53220294	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	3	53220294	53220294	G	A	SNP	PRKCD	ENST00000330452	human	ensembl	74_37	+1	known	missense	c.1198	p.V400M	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Prot_kin_PKC_delta,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_C2_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Prot_kin_PKC_delta,prints_DAG/PE-bd,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_dom	-	no_errors	PRKCD	HGNC	ENSG00000163932				123	0	0	101	19	15.8333
DCP1A	0	genome.wustl.edu	37	3	53326194	53326194	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	3	53326194	53326194	T	C	SNP	DCP1A	ENST00000607628	human	ensembl	74_37	-1	known	missense	c.1288	p.T430A	1.000	NULL	pfam_DCP1	-	no_errors	DCP1A	HGNC	ENSG00000162290				269	1	0.37037	230	48	17.2662
CACNA1D	0	genome.wustl.edu	37	3	53531320	53531320	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	3	53531320	53531320	G	A	SNP	CACNA1D	ENST00000288139	human	ensembl	74_37	+1	known	missense	c.209	p.S70N	1.000	prints_LVDCC_a1dsu	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCCAlpha1,prints_VDCC_L_a1su,prints_LVDCC_a1dsu	-	no_errors	CACNA1D	HGNC	ENSG00000157388				135	0	0	70	51	42.1488
LRTM1	0	genome.wustl.edu	37	3	54952605	54952605	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	3	54952605	54952605	C	T	SNP	LRTM1	ENST00000273286	human	ensembl	74_37	-1	known	missense	c.919	p.A307T	0.858	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	LRTM1	HGNC	ENSG00000144771				241	0	0	174	34	16.3462
FAM208A	0	genome.wustl.edu	37	3	56657240	56657240	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	3	56657240	56657240	A	G	SNP	FAM208A	ENST00000355628	human	ensembl	74_37	-1	known	missense	c.4655	p.V1552A	1.000	NULL	pfam_DUF3715	-	no_errors	FAM208A	HGNC	ENSG00000163946				127	0	0	102	7	6.42202
FLNB	0	genome.wustl.edu	37	3	58155348	58155348	+	Silent	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	3	58155348	58155348	C	T	SNP	FLNB	ENST00000295956	human	ensembl	74_37	+1	known	silent	c.7449	p.N2483	0.004	NULL	pfam_Filamin/ABP280_repeat-like,pfam_CH-domain,superfamily_CH-domain,superfamily_Ig_E-set,smart_CH-domain,smart_Filamin,pfscan_CH-domain,pfscan_Filamin/ABP280_repeat-like	-	no_errors	FLNB	HGNC	ENSG00000136068				187	0	0	115	51	30.7229
ATXN7	0	genome.wustl.edu	37	3	63973915	63973915	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	3	63973915	63973915	C	T	SNP	ATXN7	ENST00000398590	human	ensembl	74_37	+1	known	missense	c.1276	p.H426Y	1.000	NULL	pfam_SCA7_dom	-	no_errors	ATXN7	HGNC	ENSG00000163635				336	1	0.296736	224	149	39.9464
MAGI1	0	genome.wustl.edu	37	3	65344808	65344808	+	Silent	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	3	65344808	65344808	G	A	SNP	MAGI1	ENST00000330909	human	ensembl	74_37	-1	known	silent	c.3738	p.I1246	1.000	NULL	pfam_PDZ,pfam_WW_dom,pfam_GK/Ca_channel_bsu,superfamily_PDZ,superfamily_P-loop_NTPase,superfamily_WW_dom,smart_PDZ,smart_GK/Ca_channel_bsu,smart_WW_dom,pfscan_PDZ,pfscan_WW_dom,pfscan_Guanylate_kin-like	-	no_errors	MAGI1	HGNC	ENSG00000151276				352	1	0.283286	265	45	14.5161
BRPF1	0	genome.wustl.edu	37	3	9786077	9786077	+	Silent	SNP	G	G	C			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	3	9786077	9786077	G	C	SNP	BRPF1	ENST00000383829	human	ensembl	74_37	+1	known	silent	c.2805	p.G935	1.000	NULL	pfam_Enhancer_polycomb-like_N,pfam_Bromodomain,pfam_PWWP_dom,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_Bromodomain,smart_PWWP_dom,pfscan_PWWP_dom,pfscan_Znf_PHD-finger,pfscan_Znf_C2H2,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BRPF1	HGNC	ENSG00000156983				52	0	0	29	6	17.1429
TET2	0	genome.wustl.edu	37	4	106156409	106156409	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	4	106156409	106156409	A	G	SNP	TET2	ENST00000380013	human	ensembl	74_37	+1	known	missense	c.1310	p.Y437C	0.186	NULL	NULL	-	no_errors	TET2	HGNC	ENSG00000168769				114	0	0	60	11	15.493
PAPSS1	0	genome.wustl.edu	37	4	108615044	108615044	+	Silent	SNP	A	A	G			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	4	108615044	108615044	A	G	SNP	PAPSS1	ENST00000265174	human	ensembl	74_37	-1	known	silent	c.294	p.N98	0.999	pfam_APS_kinase,superfamily_P-loop_NTPase,tigrfam_APS_kinase	pfam_Sulfurylase_cat_dom,pfam_APS_kinase,superfamily_PUA-like_domain,superfamily_P-loop_NTPase,tigrfam_Sulphate_adenylyltransferase,tigrfam_APS_kinase	-	no_errors	PAPSS1	HGNC	ENSG00000138801				117	0	0	74	11	12.9412
LEF1	0	genome.wustl.edu	37	4	109084737	109084737	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	4	109084737	109084737	G	A	SNP	LEF1	ENST00000265165	human	ensembl	74_37	-1	known	missense	c.401	p.P134L	1.000	pfam_CTNNB1-bd_N	pfam_CTNNB1-bd_N,pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	-	no_errors	LEF1	HGNC	ENSG00000138795				236	0	0	123	28	18.543
LEF1	0	genome.wustl.edu	37	4	109086329	109086329	+	RNA	SNP	T	T	C			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	4	109086329	109086329	T	C	SNP	LEF1	ENST00000509428	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	LEF1	HGNC	ENSG00000138795				192	0	0	111	25	18.3824
PITX2	0	genome.wustl.edu	37	4	111553611	111553611	+	Silent	SNP	A	A	G			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	4	111553611	111553611	A	G	SNP	PITX2	ENST00000354925	human	ensembl	74_37	-1	known	silent	c.72	p.C24	1.000	pirsf_Homeobox_Pitx/unc30	pfam_Homeobox_dom,pfam_OAR_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pirsf_Homeobox_Pitx/unc30,pfscan_OAR_dom,pfscan_Homeobox_dom	-	no_errors	PITX2	HGNC	ENSG00000164093				159	1	0.625	99	13	11.6071
USP53	0	genome.wustl.edu	37	4	120177651	120177651	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	4	120177651	120177651	T	C	SNP	USP53	ENST00000274030	human	ensembl	74_37	+1	known	missense	c.542	p.V181A	1.000	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	-	no_errors	USP53	HGNC	ENSG00000145390				175	0	0	111	20	15.2672
USP53	0	genome.wustl.edu	37	4	120193037	120193037	+	Silent	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	4	120193037	120193037	G	A	SNP	USP53	ENST00000274030	human	ensembl	74_37	+1	known	silent	c.2022	p.V674	0.001	NULL	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	-	no_errors	USP53	HGNC	ENSG00000145390				305	0	0	155	40	20.5128
ADAD1	0	genome.wustl.edu	37	4	123301319	123301319	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	4	123301319	123301319	C	T	SNP	ADAD1	ENST00000296513	human	ensembl	74_37	+1	known	missense	c.95	p.T32M	0.001	NULL	pfam_A_deamin,pfam_dsRNA-bd_dom,smart_dsRNA-bd_dom,smart_A_deamin,pfscan_dsRNA-bd_dom,pfscan_A_deamin	-	no_errors	ADAD1	HGNC	ENSG00000164113				111	0	0	56	11	16.4179
FAT4	0	genome.wustl.edu	37	4	126370100	126370100	+	Silent	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	4	126370100	126370100	C	T	SNP	FAT4	ENST00000394329	human	ensembl	74_37	+1	known	silent	c.7929	p.D2643	0.008	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,superfamily_Cadherin-like,superfamily_ConA-like_lec_gl_sf,smart_Cadherin,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT4	HGNC	ENSG00000196159				100	0	0	47	14	22.9508
GAB1	0	genome.wustl.edu	37	4	144387375	144387375	+	Silent	SNP	T	T	C			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	4	144387375	144387375	T	C	SNP	GAB1	ENST00000262995	human	ensembl	74_37	+1	known	silent	c.2013	p.R671	0.138	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	GAB1	HGNC	ENSG00000109458				117	0	0	68	14	17.0732
CPEB2	0	genome.wustl.edu	37	4	15060834	15060834	+	Silent	SNP	A	A	G			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	4	15060834	15060834	A	G	SNP	CPEB2	ENST00000538197	human	ensembl	74_37	+1	known	silent	c.2604	p.L868	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	CPEB2	HGNC	ENSG00000137449				157	0	0	93	23	19.8276
DCHS2	0	genome.wustl.edu	37	4	155254486	155254486	+	Silent	SNP	T	T	C			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	4	155254486	155254486	T	C	SNP	DCHS2	ENST00000357232	human	ensembl	74_37	-1	known	silent	c.1377	p.P459	0.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_HTH_CenpB_DNA-bd_dom,superfamily_Cadherin-like,superfamily_Homeodomain-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	DCHS2	HGNC	ENSG00000197410				166	1	0.598802	107	36	25.1748
LRAT	0	genome.wustl.edu	37	4	155665562	155665562	+	Silent	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	4	155665562	155665562	C	T	SNP	LRAT	ENST00000336356	human	ensembl	74_37	+1	known	silent	c.84	p.G28	0.000	NULL	pfam_LRAT-like_dom	-	no_errors	LRAT	HGNC	ENSG00000121207				102	0	0	70	25	26.3158
RBM46	0	genome.wustl.edu	37	4	155720533	155720533	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	4	155720533	155720533	T	A	SNP	RBM46	ENST00000281722	human	ensembl	74_37	+1	known	missense	c.1219	p.W407R	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,tigrfam_HnRNP_R/Q_splicing_fac	-	no_errors	RBM46	HGNC	ENSG00000151962				98	0	0	47	15	24.1935
GRIA2	0	genome.wustl.edu	37	4	158254500	158254500	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	4	158254500	158254500	C	T	SNP	GRIA2	ENST00000264426	human	ensembl	74_37	+1	known	missense	c.1150	p.R384W	0.987	superfamily_Peripla_BP_I	pfam_Iontro_glu_rcpt,pfam_ANF_lig-bd_rcpt,pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,superfamily_Peripla_BP_I,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIA2	HGNC	ENSG00000120251				52	0	0	22	5	18.5185
TRIM60	0	genome.wustl.edu	37	4	165961522	165961522	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	4	165961522	165961522	C	T	SNP	TRIM60	ENST00000341062	human	ensembl	74_37	+1	known	missense	c.298	p.H100Y	0.997	pfam_Znf_B-box,smart_Znf_B-box,pfscan_Znf_B-box	pfam_SPRY_rcpt,pfam_Znf_C3HC4_RING-type,pfam_Znf_B-box,superfamily_ConA-like_lec_gl_sf,smart_Znf_RING,smart_Znf_B-box,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	TRIM60	HGNC	ENSG00000176979				100	0	0	61	22	26.506
DDX60L	0	genome.wustl.edu	37	4	169393087	169393087	+	Silent	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	4	169393087	169393087	C	T	SNP	DDX60L	ENST00000260184	human	ensembl	74_37	-1	known	silent	c.75	p.G25	0.213	NULL	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DDX60L	HGNC	ENSG00000181381				20	0	0	12	3	20
IRF2	0	genome.wustl.edu	37	4	185339800	185339800	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	4	185339800	185339800	C	G	SNP	IRF2	ENST00000393593	human	ensembl	74_37	-1	known	missense	c.250	p.A84P	1.000	pfam_Interferon_reg_fact_DNA-bd_dom,smart_Interferon_reg_fact_DNA-bd_dom,pirsf_Interferon_reg_fac-1/2,prints_Interferon_reg_fact_DNA-bd_dom	pfam_Interferon_reg_fact_DNA-bd_dom,smart_Interferon_reg_fact_DNA-bd_dom,pirsf_Interferon_reg_fac-1/2,prints_Interferon_reg_fact_DNA-bd_dom	-	no_errors	IRF2	HGNC	ENSG00000168310				87	0	0	59	5	7.8125
CCDC110	0	genome.wustl.edu	37	4	186379494	186379494	+	Silent	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	4	186379494	186379494	G	A	SNP	CCDC110	ENST00000307588	human	ensembl	74_37	-1	known	silent	c.2247	p.Y749	0.217	superfamily_4_helix_cytokine-like_core	superfamily_4_helix_cytokine-like_core	-	no_errors	CCDC110	HGNC	ENSG00000168491				52	0	0	24	6	20
SORBS2	0	genome.wustl.edu	37	4	186583258	186583258	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	4	186583258	186583258	C	T	SNP	SORBS2	ENST00000284776	human	ensembl	74_37	-1	known	missense	c.94	p.D32N	0.997	NULL	pfam_SH3_domain,pfam_SH3_2,pfam_Sorb,superfamily_SH3_domain,smart_Sorb,smart_SH3_domain,pfscan_Sorb,pfscan_SH3_domain,prints_SH3_domain,prints_p67phox	-	no_errors	SORBS2	HGNC	ENSG00000154556				49	0	0	28	12	30
SLIT2	0	genome.wustl.edu	37	4	20620584	20620584	+	Silent	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	4	20620584	20620584	C	T	SNP	SLIT2	ENST00000504154	human	ensembl	74_37	+1	known	silent	c.4542	p.D1514	0.994	smart_Cys_knot_C,pfscan_Cys_knot_C	pfam_EG-like_dom,pfam_Laminin_G,pfam_Leu-rich_rpt,pfam_LRR-contain_N,pfam_Cys-rich_flank_reg_C,superfamily_ConA-like_lec_gl_sf,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_Fol_N,smart_Laminin_G,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	SLIT2	HGNC	ENSG00000145147				98	0	0	54	8	12.9032
LGI2	0	genome.wustl.edu	37	4	25005545	25005545	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	4	25005545	25005545	A	G	SNP	LGI2	ENST00000382114	human	ensembl	74_37	-1	known	missense	c.1166	p.L389P	1.000	pfam_EPTP,pfscan_EAR	pfam_EPTP,pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,pfscan_EAR	-	no_errors	LGI2	HGNC	ENSG00000153012				248	1	0.401606	228	17	6.93878
SLC34A2	0	genome.wustl.edu	37	4	25664381	25664381	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	4	25664381	25664381	C	T	SNP	SLC34A2	ENST00000382051	human	ensembl	74_37	+1	known	missense	c.167	p.T56M	0.849	NULL	pfam_Na/Pi_transpt,superfamily_ABC1_TM_dom,tigrfam_Na/Pi_transpt	-	no_errors	SLC34A2	HGNC	ENSG00000157765				221	2	0.896861	152	39	20.4188
FAM193A	0	genome.wustl.edu	37	4	2695386	2695386	+	Silent	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	4	2695386	2695386	G	A	SNP	FAM193A	ENST00000324666	human	ensembl	74_37	+1	known	silent	c.2004	p.T668	0.023	NULL	NULL	-	no_errors	FAM193A	HGNC	ENSG00000125386				301	0	0	184	51	21.7021
RFC1	0	genome.wustl.edu	37	4	39310257	39310257	+	Silent	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	4	39310257	39310257	G	A	SNP	RFC1	ENST00000381897	human	ensembl	74_37	-1	known	silent	c.1884	p.H628	0.991	superfamily_P-loop_NTPase,pirsf_DNA_replication_fac_C_lsu	pfam_DNA_replication_fac_RFC1_C,pfam_BRCT_dom,pfam_ATPase_AAA_core,superfamily_DNA_pol3_clamp-load_cplx_C,superfamily_P-loop_NTPase,superfamily_BRCT_dom,smart_BRCT_dom,smart_AAA+_ATPase,pirsf_DNA_replication_fac_C_lsu,pfscan_BRCT_dom	-	no_errors	RFC1	HGNC	ENSG00000035928				303	0	0	174	43	19.8157
N4BP2	0	genome.wustl.edu	37	4	40115053	40115053	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	4	40115053	40115053	C	A	SNP	N4BP2	ENST00000261435	human	ensembl	74_37	+1	known	missense	c.1589	p.S530Y	1.000	superfamily_P-loop_NTPase	pfam_DUF1771,pfam_Smr/MutS2_C,superfamily_P-loop_NTPase,superfamily_UBA-like,smart_Smr/MutS2_C,pfscan_CUE,pfscan_Smr/MutS2_C	-	no_errors	N4BP2	HGNC	ENSG00000078177				232	0	0	133	33	19.8795
SHISA3	0	genome.wustl.edu	37	4	42403231	42403231	+	Silent	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	4	42403231	42403231	G	A	SNP	SHISA3	ENST00000319234	human	ensembl	74_37	+1	known	silent	c.480	p.R160	0.995	NULL	NULL	-	no_errors	SHISA3	HGNC	ENSG00000178343				250	1	0.398406	183	40	17.9372
TMEM128	0	genome.wustl.edu	37	4	4248030	4248030	+	Silent	SNP	T	T	C			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	4	4248030	4248030	T	C	SNP	TMEM128	ENST00000382753	human	ensembl	74_37	-1	known	silent	c.138	p.P46	0.999	NULL	NULL	-	no_errors	TMEM128	HGNC	ENSG00000132406				188	0	0	124	21	14.4828
NSG1	0	genome.wustl.edu	37	4	4411321	4411321	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	4	4411321	4411321	G	A	SNP	NSG1	ENST00000397958	human	ensembl	74_37	+1	known	missense	c.268	p.A90T	1.000	pfam_Calcyon_neuron-sp,pirsf_Calcyon_neuron-sp	pfam_Calcyon_neuron-sp,pirsf_Calcyon_neuron-sp	-	no_errors	NSG1	Uniprot_gn	ENSG00000168824				115	0	0	65	20	23.5294
SLAIN2	0	genome.wustl.edu	37	4	48385778	48385778	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	4	48385778	48385778	G	A	SNP	SLAIN2	ENST00000264313	human	ensembl	74_37	+1	known	missense	c.1337	p.R446H	0.996	NULL	NULL	-	no_errors	SLAIN2	HGNC	ENSG00000109171				42	0	0	20	2	9.09091
SLC10A4	0	genome.wustl.edu	37	4	48490497	48490497	+	Silent	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	4	48490497	48490497	C	T	SNP	SLC10A4	ENST00000273861	human	ensembl	74_37	+1	known	silent	c.855	p.G285	0.999	pfam_BilAc/Na_symport	pfam_BilAc/Na_symport	-	no_errors	SLC10A4	HGNC	ENSG00000145248				358	0	0	225	47	17.2794
SGCB	0	genome.wustl.edu	37	4	52896001	52896001	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	4	52896001	52896001	C	T	SNP	SGCB	ENST00000381431	human	ensembl	74_37	-1	known	missense	c.272	p.R91H	1.000	pfam_Sarcoglycan	pfam_Sarcoglycan	-	no_errors	SGCB	HGNC	ENSG00000163069				143	0	0	88	6	6.38298
TMEM165	0	genome.wustl.edu	37	4	56283253	56283253	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	4	56283253	56283253	G	A	SNP	TMEM165	ENST00000381334	human	ensembl	74_37	+1	known	missense	c.448	p.A150T	1.000	pfam_UPF0016	pfam_UPF0016	-	no_errors	TMEM165	HGNC	ENSG00000134851				107	0	0	62	16	20.5128
POLR2B	0	genome.wustl.edu	37	4	57860640	57860640	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	4	57860640	57860640	C	A	SNP	POLR2B	ENST00000314595	human	ensembl	74_37	+1	known	missense	c.314	p.P105H	1.000	pfam_RNA_pol_bsu_protrusion	pfam_DNA-dir_RNA_pol_su2_6,pfam_RNA_pol_bsu_protrusion,pfam_RNA_pol_Rpb2_2,pfam_RNA_pol_Rpb2_7,pfam_RNA_pol_Rpb2_4,pfam_RNA_pol_Rpb2_3,pfam_RNA_pol_Rpb2_5	-	no_errors	POLR2B	HGNC	ENSG00000047315				53	0	0	32	10	23.8095
POLR2B	0	genome.wustl.edu	37	4	57861549	57861549	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	4	57861549	57861549	G	A	SNP	POLR2B	ENST00000314595	human	ensembl	74_37	+1	known	missense	c.709	p.V237I	1.000	pfam_RNA_pol_bsu_protrusion,pfam_RNA_pol_Rpb2_2	pfam_DNA-dir_RNA_pol_su2_6,pfam_RNA_pol_bsu_protrusion,pfam_RNA_pol_Rpb2_2,pfam_RNA_pol_Rpb2_7,pfam_RNA_pol_Rpb2_4,pfam_RNA_pol_Rpb2_3,pfam_RNA_pol_Rpb2_5	-	no_errors	POLR2B	HGNC	ENSG00000047315				109	0	0	79	20	20.202
IGFBP7	0	genome.wustl.edu	37	4	57907023	57907023	+	Silent	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	4	57907023	57907023	G	A	SNP	IGFBP7	ENST00000295666	human	ensembl	74_37	-1	known	silent	c.552	p.I184	0.991	pfam_Ig_I-set,smart_Ig_sub,pirsf_IGFBP_rP_mac25,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Kazal_dom,pfam_IGFBP-like,smart_IGFBP-like,smart_Kazal_dom,smart_Ig_sub,pirsf_IGFBP_rP_mac25,pfscan_Ig-like_dom	-	no_errors	IGFBP7	HGNC	ENSG00000163453				50	0	0	24	11	31.4286
LPHN3	0	genome.wustl.edu	37	4	62801758	62801758	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	4	62801758	62801758	G	A	SNP	LPHN3	ENST00000507625	human	ensembl	74_37	+1	known	missense	c.2414	p.R805Q	1.000	pfam_DUF3497	pfam_GPCR_2_latrophilin_rcpt_C,pfam_Olfac-like,pfam_DUF3497,pfam_GPCR_2_secretin-like,pfam_Lectin_gal-bd_dom,pfam_GPS_dom,pfam_GPCR_2_extracellular_dom,smart_Olfac-like,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_GPS_dom,pfscan_Lectin_gal-bd_dom,pfscan_Olfac-like,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GPCR_2_latrophilin,prints_GPCR_2_secretin-like	-	no_errors	LPHN3	HGNC	ENSG00000150471				36	0	0	13	4	23.5294
MAN2B2	0	genome.wustl.edu	37	4	6588761	6588761	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	4	6588761	6588761	C	T	SNP	MAN2B2	ENST00000285599	human	ensembl	74_37	+1	known	missense	c.430	p.P144S	1.000	pfam_Glyco_hydro_38_N,superfamily_Glyco_hydro/deAcase_b/a-brl	pfam_Glyco_hydro_38_N,pfam_Glyco_hydro_38_C,pfam_Glyco_hydro_38_cen_dom,superfamily_Gal_mutarotase_SF_dom,superfamily_Glyco_hydro/deAcase_b/a-brl,smart_Glyco_hydro_38_cen_dom	-	no_errors	MAN2B2	HGNC	ENSG00000013288				98	0	0	60	20	25
UGT2A3	0	genome.wustl.edu	37	4	69795767	69795767	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	4	69795767	69795767	G	A	SNP	UGT2A3	ENST00000251566	human	ensembl	74_37	-1	known	nonsense	c.1348	p.Q450*	0.559	pfam_UDP_glucos_trans	pfam_UDP_glucos_trans,pfam_Glyco_trans_28_C	-	no_errors	UGT2A3	HGNC	ENSG00000135220				224	0	0	143	23	13.8554
SHROOM3	0	genome.wustl.edu	37	4	77661573	77661573	+	Silent	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	4	77661573	77661573	G	A	SNP	SHROOM3	ENST00000296043	human	ensembl	74_37	+1	known	silent	c.2247	p.S749	0.000	NULL	pfam_ASD2,pfam_ASD1,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	SHROOM3	HGNC	ENSG00000138771				68	0	0	37	9	19.5652
C4orf22	0	genome.wustl.edu	37	4	81884720	81884720	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	4	81884720	81884720	A	G	SNP	C4orf22	ENST00000508675	human	ensembl	74_37	+1	known	missense	c.707	p.Y236C	1.000	NULL	NULL	-	no_errors	C4orf22	HGNC	ENSG00000197826				104	0	0	34	5	12.8205
PRKG2	0	genome.wustl.edu	37	4	82090847	82090847	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	4	82090847	82090847	C	T	SNP	PRKG2	ENST00000264399	human	ensembl	74_37	-1	known	missense	c.818	p.R273K	1.000	smart_cNMP-bd_dom,pirsf_cGMP-dependent_protein_kinase,pfscan_cNMP-bd_dom	pfam_Prot_kinase_dom,pfam_cNMP-bd_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_cGMP-dependent_protein_kinase,pfscan_cNMP-bd_dom,pfscan_Prot_kinase_dom,prints_cGMP_dep_kinase,prints_cAMP/cGMP_kin	-	no_errors	PRKG2	HGNC	ENSG00000138669				183	0	0	88	14	13.7255
LIN54	0	genome.wustl.edu	37	4	83867618	83867618	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	4	83867618	83867618	A	G	SNP	LIN54	ENST00000340417	human	ensembl	74_37	-1	known	missense	c.961	p.S321P	1.000	NULL	pfam_CRC	-	no_errors	LIN54	HGNC	ENSG00000189308				151	0	0	84	10	10.6383
TRMT44	0	genome.wustl.edu	37	4	8477523	8477523	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	4	8477523	8477523	G	A	SNP	TRMT44	ENST00000389737	human	ensembl	74_37	+1	known	missense	c.2069	p.R690H	0.995	NULL	pfam_tRNA_uracil_MeTrfase	-	no_errors	TRMT44	HGNC	ENSG00000155275				145	0	0	89	30	25.2101
CPZ	0	genome.wustl.edu	37	4	8603054	8603054	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	4	8603054	8603054	G	A	SNP	CPZ	ENST00000360986	human	ensembl	74_37	+1	known	missense	c.326	p.C109Y	0.998	pfam_Frizzled_dom,superfamily_Frizzled_dom,smart_Frizzled_dom,pfscan_Frizzled_dom	pfam_Peptidase_M14,pfam_Frizzled_dom,superfamily_Frizzled_dom,superfamily_CarboxyPept-like_regulatory,smart_Frizzled_dom,smart_Peptidase_M14,prints_Peptidase_M14,pfscan_Frizzled_dom	-	no_errors	CPZ	HGNC	ENSG00000109625				40	0	0	20	6	23.0769
ARHGAP24	0	genome.wustl.edu	37	4	86916256	86916256	+	Silent	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	4	86916256	86916256	C	T	SNP	ARHGAP24	ENST00000395184	human	ensembl	74_37	+1	known	silent	c.1449	p.R483	0.452	NULL	pfam_RhoGAP_dom,pfam_Pleckstrin_homology,superfamily_Rho_GTPase_activation_prot,smart_Pleckstrin_homology,smart_RhoGAP_dom,pfscan_Pleckstrin_homology,pfscan_RhoGAP_dom	-	no_errors	ARHGAP24	HGNC	ENSG00000138639				134	0	0	86	23	21.1009
KLHL8	0	genome.wustl.edu	37	4	88091651	88091651	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	4	88091651	88091651	G	A	SNP	KLHL8	ENST00000273963	human	ensembl	74_37	-1	known	missense	c.1325	p.T442I	0.161	pfam_Kelch_1,smart_Kelch_1,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BACK,pfam_Kelch_2,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL8	HGNC	ENSG00000145332				182	0	0	130	16	10.9589
GRID2	0	genome.wustl.edu	37	4	94376883	94376883	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	4	94376883	94376883	G	A	SNP	GRID2	ENST00000282020	human	ensembl	74_37	+1	known	missense	c.1616	p.R539H	1.000	pfam_SBP_bac_3,smart_Iontro_glu_rcpt	pfam_Iontro_glu_rcpt,pfam_ANF_lig-bd_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,superfamily_Peripla_BP_I,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRID2	HGNC	ENSG00000152208				212	0	0	107	41	27.7027
BMPR1B	0	genome.wustl.edu	37	4	96052564	96052564	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	4	96052564	96052564	C	T	SNP	BMPR1B	ENST00000440890	human	ensembl	74_37	+1	known	missense	c.1067	p.P356L	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_TGF_beta_rcpt_GS,pfam_Activin_rcpt,superfamily_Kinase-like_dom,smart_TGF_beta_rcpt_GS,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_TGFB_receptor	-	no_errors	BMPR1B	HGNC	ENSG00000138696				146	0	0	75	15	16.6667
ST8SIA4	0	genome.wustl.edu	37	5	100147699	100147699	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	5	100147699	100147699	G	A	SNP	ST8SIA4	ENST00000231461	human	ensembl	74_37	-1	known	missense	c.932	p.A311V	0.969	pfam_Glyco_trans_29,pirsf_Sialyl_trans	pfam_Glyco_trans_29,pirsf_Sialyl_trans	-	no_errors	ST8SIA4	HGNC	ENSG00000113532				73	0	0	43	9	17.3077
SLCO4C1	0	genome.wustl.edu	37	5	101631748	101631748	+	Silent	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	5	101631748	101631748	C	T	SNP	SLCO4C1	ENST00000310954	human	ensembl	74_37	-1	known	silent	c.219	p.E73	0.015	NULL	pfam_OA_transporter,pfam_MFS,pfam_Kazal_dom,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_OA_transporter	-	no_errors	SLCO4C1	HGNC	ENSG00000173930				144	0	0	91	21	18.75
FAM173B	0	genome.wustl.edu	37	5	10239372	10239372	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	5	10239372	10239372	A	G	SNP	FAM173B	ENST00000511437	human	ensembl	74_37	-1	known	missense	c.113	p.F38S	0.004	NULL	NULL	-	no_errors	FAM173B	HGNC	ENSG00000150756				184	0	0	101	28	21.7054
SEMA6A	0	genome.wustl.edu	37	5	115813758	115813758	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	5	115813758	115813758	A	G	SNP	SEMA6A	ENST00000257414	human	ensembl	74_37	-1	known	missense	c.1520	p.V507A	1.000	superfamily_Semap_dom,pfscan_Semap_dom	pfam_Semap_dom,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,pfscan_Semap_dom	-	no_errors	SEMA6A	HGNC	ENSG00000092421				205	0	0	134	13	8.84354
FTMT	0	genome.wustl.edu	37	5	121188033	121188033	+	Silent	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	5	121188033	121188033	C	T	SNP	FTMT	ENST00000321339	human	ensembl	74_37	+1	known	silent	c.375	p.H125	0.978	pfam_Ferritin_DPS_dom,superfamily_Ferritin-like_SF,pfscan_Ferritin-like_diiron	pfam_Ferritin_DPS_dom,superfamily_Ferritin-like_SF,pfscan_Ferritin-like_diiron	-	no_errors	FTMT	HGNC	ENSG00000181867				131	0	0	66	14	17.5
GRAMD3	0	genome.wustl.edu	37	5	125759363	125759363	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	5	125759363	125759363	G	A	SNP	GRAMD3	ENST00000542322	human	ensembl	74_37	+1	known	missense	c.46	p.A16T	1.000	NULL	pfam_GRAM,smart_GRAM	-	no_errors	GRAMD3	HGNC	ENSG00000155324				26	0	0	20	6	23.0769
ADAMTS19	0	genome.wustl.edu	37	5	128984535	128984535	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	5	128984535	128984535	A	G	SNP	ADAMTS19	ENST00000274487	human	ensembl	74_37	+1	known	missense	c.2030	p.Y677C	1.000	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_PLAC,pfam_Pept_M10_metallopeptidase,superfamily_Thrombospondin_1_rpt,smart_ADAM_Cys-rich,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS19	HGNC	ENSG00000145808				180	0	0	94	17	15.3153
C5orf56	0	genome.wustl.edu	37	5	131796357	131796357	+	Silent	SNP	T	T	C			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	5	131796357	131796357	T	C	SNP	C5orf56	ENST00000337752	human	ensembl	74_37	+1	novel	silent	c.192	p.H64	0.001	NULL	NULL	-	no_errors	C5orf56	HGNC	ENSG00000197536				266	1	0.374532	182	49	21.2121
FSTL4	0	genome.wustl.edu	37	5	132560966	132560966	+	Silent	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	5	132560966	132560966	G	A	SNP	FSTL4	ENST00000265342	human	ensembl	74_37	-1	known	silent	c.1188	p.S396	0.213	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Kazal_dom,smart_Kazal_dom,smart_Ig_sub,smart_Ig_sub2,pfscan_EF_hand_dom,pfscan_Ig-like_dom	-	no_errors	FSTL4	HGNC	ENSG00000053108				192	0	0	116	30	20.5479
PSD2	0	genome.wustl.edu	37	5	139193088	139193088	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	5	139193088	139193088	G	A	SNP	PSD2	ENST00000274710	human	ensembl	74_37	+1	known	missense	c.566	p.R189H	0.556	NULL	pfam_Sec7_dom,pfam_Pleckstrin_homology,superfamily_Sec7_dom,smart_Sec7_dom,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Sec7_dom,prints_PH_dom-spectrin-type	-	no_errors	PSD2	HGNC	ENSG00000146005				120	0	0	70	24	25.5319
DNAH5	0	genome.wustl.edu	37	5	13928247	13928247	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	5	13928247	13928247	C	T	SNP	DNAH5	ENST00000265104	human	ensembl	74_37	-1	known	missense	c.233	p.R78Q	1.000	NULL	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH5	HGNC	ENSG00000039139				75	0	0	63	10	13.6986
SLC35A4	0	genome.wustl.edu	37	5	139946788	139946788	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	5	139946788	139946788	G	T	SNP	SLC35A4	ENST00000323146	human	ensembl	74_37	+1	known	missense	c.34	p.G12C	1.000	pirsf_UDP/CMP-sugar_transptr	pfam_Nuc_sug_transpt,pfam_DMT,pirsf_UDP/CMP-sugar_transptr	-	no_errors	SLC35A4	HGNC	ENSG00000176087				199	0	0	141	29	17.0588
DND1	0	genome.wustl.edu	37	5	140052887	140052887	+	Silent	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	5	140052887	140052887	G	A	SNP	DND1	ENST00000542735	human	ensembl	74_37	-1	known	silent	c.111	p.N37	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	DND1	HGNC	ENSG00000256453				175	0	0	99	24	19.5122
PCDHA1	0	genome.wustl.edu	37	5	140166202	140166202	+	Silent	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	5	140166202	140166202	C	T	SNP	PCDHA1	ENST00000504120	human	ensembl	74_37	+1	known	silent	c.327	p.I109	0.444	pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA1	HGNC	ENSG00000204970				171	0	0	124	33	21.0191
PCDHA2	0	genome.wustl.edu	37	5	140174554	140174554	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	5	140174554	140174554	C	T	SNP	PCDHA2	ENST00000526136	human	ensembl	74_37	+1	known	missense	c.5	p.A2V	0.001	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA2	HGNC	ENSG00000204969				132	0	0	94	20	17.5439
PCDHA5	0	genome.wustl.edu	37	5	140202649	140202649	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	5	140202649	140202649	G	A	SNP	PCDHA5	ENST00000529859	human	ensembl	74_37	+1	known	missense	c.1289	p.G430D	0.990	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA5	HGNC	ENSG00000204965				191	0	0	136	33	19.5266
PCDHA7	0	genome.wustl.edu	37	5	140215225	140215225	+	Silent	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	5	140215225	140215225	C	T	SNP	PCDHA7	ENST00000525929	human	ensembl	74_37	+1	known	silent	c.1257	p.S419	0.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA7	HGNC	ENSG00000204963				295	1	0.337838	165	62	27.3128
PCDHA7	0	genome.wustl.edu	37	5	140215333	140215333	+	Silent	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	5	140215333	140215333	C	T	SNP	PCDHA7	ENST00000525929	human	ensembl	74_37	+1	known	silent	c.1365	p.F455	0.621	superfamily_Cadherin-like,prints_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA7	HGNC	ENSG00000204963				134	0	0	99	28	22.0472
PCDHAC2	0	genome.wustl.edu	37	5	140348144	140348144	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	5	140348144	140348144	C	T	SNP	PCDHAC2	ENST00000289269	human	ensembl	74_37	+1	known	missense	c.1793	p.A598V	1.000	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHAC2	HGNC	ENSG00000243232				100	0	0	63	18	22.2222
PCDHB1	0	genome.wustl.edu	37	5	140431398	140431398	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	5	140431398	140431398	C	T	SNP	PCDHB1	ENST00000306549	human	ensembl	74_37	+1	known	nonsense	c.343	p.Q115*	1.000	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB1	HGNC	ENSG00000171815				99	0	0	90	5	5.26316
PCDHB1	0	genome.wustl.edu	37	5	140431483	140431483	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	5	140431483	140431483	C	T	SNP	PCDHB1	ENST00000306549	human	ensembl	74_37	+1	known	missense	c.428	p.P143L	0.315	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB1	HGNC	ENSG00000171815				86	0	0	50	10	16.6667
ENSG00000272154	0	genome.wustl.edu	37	5	140480141	140480141	+	RNA	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	5	140480141	140480141	G	A	SNP	ENSG00000272154	ENST00000607216	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	AC005754.7	Clone_based_vega_gene	ENSG00000272154				44	0	0	18	6	25
PCDHB5	0	genome.wustl.edu	37	5	140515561	140515561	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	5	140515561	140515561	C	T	SNP	PCDHB5	ENST00000231134	human	ensembl	74_37	+1	known	missense	c.545	p.T182M	0.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB5	HGNC	ENSG00000113209				164	0	0	117	31	20.9459
PCDHB6	0	genome.wustl.edu	37	5	140531365	140531365	+	Silent	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	5	140531365	140531365	C	T	SNP	PCDHB6	ENST00000231136	human	ensembl	74_37	+1	known	silent	c.1527	p.G509	0.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB6	HGNC	ENSG00000113211				232	0	0	135	26	16.1491
PCDHB8	0	genome.wustl.edu	37	5	140558115	140558115	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	5	140558115	140558115	A	G	SNP	PCDHB8	ENST00000239444	human	ensembl	74_37	+1	known	missense	c.500	p.N167S	0.002	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB8	HGNC	ENSG00000120322				429	0	0	363	25	6.4433
PCDHB8	0	genome.wustl.edu	37	5	140559035	140559035	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	5	140559035	140559035	G	A	SNP	PCDHB8	ENST00000239444	human	ensembl	74_37	+1	known	missense	c.1420	p.V474I	0.291	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB8	HGNC	ENSG00000120322				723	0	0	524	46	8.07018
PCDHB12	0	genome.wustl.edu	37	5	140588900	140588900	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	5	140588900	140588900	G	C	SNP	PCDHB12	ENST00000239450	human	ensembl	74_37	+1	known	missense	c.421	p.E141Q	0.895	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB12	HGNC	ENSG00000120328				205	0	0	125	25	16.6667
PCDHB12	0	genome.wustl.edu	37	5	140590328	140590328	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	5	140590328	140590328	G	A	SNP	PCDHB12	ENST00000239450	human	ensembl	74_37	+1	known	missense	c.1849	p.V617M	0.740	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB12	HGNC	ENSG00000120328				99	0	0	89	14	13.5922
PCDHB18	0	genome.wustl.edu	37	5	140615735	140615735	+	RNA	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	5	140615735	140615735	G	A	SNP	PCDHB18	ENST00000526308	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	PCDHB18	HGNC	ENSG00000146001				158	0	0	128	11	7.91367
PCDHGA1	0	genome.wustl.edu	37	5	140712592	140712592	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	5	140712592	140712592	A	G	SNP	PCDHGA1	ENST00000517417	human	ensembl	74_37	+1	known	missense	c.2341	p.S781G	0.831	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA1	HGNC	ENSG00000204956				253	0	0	143	43	23.1183
PCDHGB1	0	genome.wustl.edu	37	5	140731932	140731932	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	5	140731932	140731932	C	T	SNP	PCDHGB1	ENST00000523390	human	ensembl	74_37	+1	known	missense	c.2105	p.A702V	0.004	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGB1	HGNC	ENSG00000254221				310	0	0	178	60	25.2101
PCDHGA10	0	genome.wustl.edu	37	5	140794669	140794669	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	5	140794669	140794669	A	G	SNP	PCDHGA10	ENST00000398610	human	ensembl	74_37	+1	known	missense	c.1927	p.K643E	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA10	HGNC	ENSG00000253846				169	0	0	105	30	22.2222
PCDHGB8P	0	genome.wustl.edu	37	5	140807370	140807370	+	RNA	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	5	140807370	140807370	G	A	SNP	PCDHGB8P	ENST00000502926	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	PCDHGB8P	HGNC	ENSG00000248449				24	0	0	12	4	25
PCDHGA12	0	genome.wustl.edu	37	5	140811073	140811073	+	Silent	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	5	140811073	140811073	G	A	SNP	PCDHGA12	ENST00000252085	human	ensembl	74_37	+1	known	silent	c.747	p.A249	0.003	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA12	HGNC	ENSG00000253159				160	0	0	85	24	22.0183
PCDHGA12	0	genome.wustl.edu	37	5	140812291	140812291	+	Silent	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	5	140812291	140812291	C	T	SNP	PCDHGA12	ENST00000252085	human	ensembl	74_37	+1	known	silent	c.1965	p.S655	0.007	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA12	HGNC	ENSG00000253159				118	0	0	98	21	17.6471
PRELID2	0	genome.wustl.edu	37	5	145199532	145199532	+	Silent	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	5	145199532	145199532	G	A	SNP	PRELID2	ENST00000334744	human	ensembl	74_37	-1	known	silent	c.183	p.N61	1.000	pfam_PRELI/MSF1,pfscan_PRELI/MSF1	pfam_PRELI/MSF1,pfscan_PRELI/MSF1	-	no_errors	PRELID2	HGNC	ENSG00000186314				198	1	0.502513	96	37	27.8195
DPYSL3	0	genome.wustl.edu	37	5	146788290	146788290	+	Splice_Site	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	5	146788290	146788290	C	T	SNP	DPYSL3	ENST00000398514	human	ensembl	74_37	-1	known	splice_site	c.690+1	e7+1	1.000	-	-	-	no_errors	DPYSL3	HGNC	ENSG00000113657				147	0	0	74	22	22.9167
ANKH	0	genome.wustl.edu	37	5	14713763	14713763	+	Silent	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	5	14713763	14713763	C	T	SNP	ANKH	ENST00000284268	human	ensembl	74_37	-1	known	silent	c.1155	p.A385	0.967	NULL	pfam_ANKH	-	no_errors	ANKH	HGNC	ENSG00000154122				103	0	0	65	9	12.1622
FBXO38	0	genome.wustl.edu	37	5	147813209	147813209	+	Silent	SNP	A	A	G			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	5	147813209	147813209	A	G	SNP	FBXO38	ENST00000340253	human	ensembl	74_37	+1	known	silent	c.2766	p.L922	1.000	NULL	superfamily_F-box_dom	-	no_errors	FBXO38	HGNC	ENSG00000145868				210	0	0	112	38	25.3333
ADRB2	0	genome.wustl.edu	37	5	148206896	148206896	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	5	148206896	148206896	C	T	SNP	ADRB2	ENST00000305988	human	ensembl	74_37	+1	known	missense	c.502	p.P168S	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_ADRB2_rcpt,prints_GPCR_Rhodpsn,prints_ADR_fam	-	no_errors	ADRB2	HGNC	ENSG00000169252				265	0	0	159	54	25.3521
CSF1R	0	genome.wustl.edu	37	5	149433761	149433761	+	Silent	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	5	149433761	149433761	G	A	SNP	CSF1R	ENST00000286301	human	ensembl	74_37	-1	known	silent	c.2790	p.S930	0.048	pirsf_Tyr_kinase_CSF1/PDGF_rcpt	pirsf_Tyr_kinase_CSF1/PDGF_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Immunoglobulin,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	CSF1R	HGNC	ENSG00000182578				43	0	0	24	7	22.5806
TCOF1	0	genome.wustl.edu	37	5	149771605	149771605	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	5	149771605	149771605	C	A	SNP	TCOF1	ENST00000451292	human	ensembl	74_37	+1	known	missense	c.3494	p.P1165H	0.002	NULL	pfam_TCS_treacle,smart_LisH_dimerisation,pfscan_LisH_dimerisation,prints_Treacle-like_TCS	-	no_errors	TCOF1	HGNC	ENSG00000070814				144	0	0	77	5	6.09756
NDST1	0	genome.wustl.edu	37	5	149900697	149900697	+	RNA	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	5	149900697	149900697	G	A	SNP	NDST1	ENST00000524161	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	NDST1	HGNC	ENSG00000070614				22	0	0	18	3	14.2857
TNIP1	0	genome.wustl.edu	37	5	150411961	150411961	+	RNA	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	5	150411961	150411961	G	A	SNP	TNIP1	ENST00000521423	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.010	-	-	-	no_errors	TNIP1	HGNC	ENSG00000145901				33	0	0	26	5	16.129
FAT2	0	genome.wustl.edu	37	5	150931050	150931050	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	5	150931050	150931050	C	T	SNP	FAT2	ENST00000261800	human	ensembl	74_37	-1	known	missense	c.4274	p.G1425E	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,superfamily_Cadherin-like,superfamily_ConA-like_lec_gl_sf,smart_Cadherin,smart_Laminin_G,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT2	HGNC	ENSG00000086570				133	0	0	83	28	25.2252
FAT2	0	genome.wustl.edu	37	5	150946645	150946645	+	Silent	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	5	150946645	150946645	G	A	SNP	FAT2	ENST00000261800	human	ensembl	74_37	-1	known	silent	c.1848	p.S616	0.326	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,superfamily_Cadherin-like,superfamily_ConA-like_lec_gl_sf,smart_Cadherin,smart_Laminin_G,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT2	HGNC	ENSG00000086570				139	1	0.714286	71	29	29
FAM71B	0	genome.wustl.edu	37	5	156590335	156590335	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	5	156590335	156590335	G	A	SNP	FAM71B	ENST00000302938	human	ensembl	74_37	-1	known	missense	c.941	p.A314V	0.001	NULL	pfam_DUF3699	-	no_errors	FAM71B	HGNC	ENSG00000170613				257	0	0	158	43	21.393
EBF1	0	genome.wustl.edu	37	5	158204430	158204430	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	5	158204430	158204430	T	C	SNP	EBF1	ENST00000313708	human	ensembl	74_37	-1	known	missense	c.1027	p.I343V	1.000	pfam_IPT,superfamily_Ig_E-set,smart_IPT	pfam_IPT,superfamily_Ig_E-set,superfamily_bHLH_dom,smart_IPT	-	no_errors	EBF1	HGNC	ENSG00000164330				144	1	0.689655	89	22	19.8198
HMMR	0	genome.wustl.edu	37	5	162909718	162909718	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	5	162909718	162909718	G	A	SNP	HMMR	ENST00000393915	human	ensembl	74_37	+1	known	missense	c.1456	p.A486T	0.114	NULL	NULL	-	no_errors	HMMR	HGNC	ENSG00000072571				115	0	0	59	18	23.3766
WWC1	0	genome.wustl.edu	37	5	167850695	167850695	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	5	167850695	167850695	C	T	SNP	WWC1	ENST00000265293	human	ensembl	74_37	+1	known	nonsense	c.1432	p.Q478*	1.000	NULL	pfam_WW_dom,superfamily_C2_dom,superfamily_WW_dom,smart_WW_dom,pfscan_WW_dom	-	no_errors	WWC1	HGNC	ENSG00000113645				214	0	0	140	28	16.6667
LCP2	0	genome.wustl.edu	37	5	169697783	169697783	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	5	169697783	169697783	C	T	SNP	LCP2	ENST00000046794	human	ensembl	74_37	-1	known	missense	c.463	p.A155T	0.094	NULL	pfam_SH2,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM,smart_SH2,pfscan_SH2	-	no_errors	LCP2	HGNC	ENSG00000043462				101	0	0	57	19	25
EIF4E1B	0	genome.wustl.edu	37	5	176070674	176070674	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	5	176070674	176070674	C	T	SNP	EIF4E1B	ENST00000318682	human	ensembl	74_37	+1	known	missense	c.235	p.R79W	1.000	pfam_TIF_eIF_4E,superfamily_TIF_eIF4e-like_dom	pfam_TIF_eIF_4E,superfamily_TIF_eIF4e-like_dom	-	no_errors	EIF4E1B	HGNC	ENSG00000175766				28	0	0	23	6	20.6897
NSD1	0	genome.wustl.edu	37	5	176673695	176673695	+	Silent	SNP	T	T	C			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	5	176673695	176673695	T	C	SNP	NSD1	ENST00000439151	human	ensembl	74_37	+1	known	silent	c.4395	p.F1465	1.000	NULL	pfam_PWWP_dom,pfam_SET_dom,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_PWWP_dom,smart_Znf_PHD,smart_AWS,smart_SET_dom,smart_Post-SET_dom,pfscan_AWS,pfscan_PWWP_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger	-	no_errors	NSD1	HGNC	ENSG00000165671				85	0	0	54	5	8.47458
ADAMTS2	0	genome.wustl.edu	37	5	178555066	178555066	+	Silent	SNP	A	A	G			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	5	178555066	178555066	A	G	SNP	ADAMTS2	ENST00000251582	human	ensembl	74_37	-1	known	silent	c.2511	p.H837	0.940	pfam_ADAM_spacer1	pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Pept_M12B_ADAM-TS2,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS2	HGNC	ENSG00000087116				146	0	0	112	8	6.66667
MGAT1	0	genome.wustl.edu	37	5	180219105	180219105	+	Silent	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	5	180219105	180219105	G	A	SNP	MGAT1	ENST00000307826	human	ensembl	74_37	-1	known	silent	c.867	p.D289	0.340	pfam_Glyco_trans_13	pfam_Glyco_trans_13	-	no_errors	MGAT1	HGNC	ENSG00000131446				69	0	0	37	11	22.9167
CDH6	0	genome.wustl.edu	37	5	31267788	31267788	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	5	31267788	31267788	G	A	SNP	CDH6	ENST00000265071	human	ensembl	74_37	+1	known	missense	c.208	p.D70N	1.000	superfamily_Cadherin-like	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH6	HGNC	ENSG00000113361				112	0	0	68	21	23.5955
PDZD2	0	genome.wustl.edu	37	5	32061224	32061224	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	5	32061224	32061224	G	A	SNP	PDZD2	ENST00000282493	human	ensembl	74_37	+1	known	missense	c.2435	p.R812Q	1.000	superfamily_PDZ,smart_PDZ	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	PDZD2	HGNC	ENSG00000133401				64	0	0	39	13	25
SLC45A2	0	genome.wustl.edu	37	5	33963963	33963963	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	5	33963963	33963963	G	T	SNP	SLC45A2	ENST00000296589	human	ensembl	74_37	-1	known	missense	c.721	p.P241T	0.982	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	-	no_errors	SLC45A2	HGNC	ENSG00000164175				173	0	0	92	31	25.2033
IRX1	0	genome.wustl.edu	37	5	3599758	3599758	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	5	3599758	3599758	G	C	SNP	IRX1	ENST00000302006	human	ensembl	74_37	+1	known	missense	c.696	p.K232N	1.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,smart_Iroquois_homeo,pfscan_Homeobox_dom	-	no_errors	IRX1	HGNC	ENSG00000170549				65	0	0	30	11	26.8293
PARP8	0	genome.wustl.edu	37	5	50090845	50090845	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	5	50090845	50090845	G	A	SNP	PARP8	ENST00000281631	human	ensembl	74_37	+1	known	missense	c.1022	p.G341D	1.000	NULL	pfam_Poly(ADP-ribose)pol_cat_dom,pfscan_Poly(ADP-ribose)pol_cat_dom	-	no_errors	PARP8	HGNC	ENSG00000151883				144	0	0	90	36	28.5714
ADAMTS16	0	genome.wustl.edu	37	5	5306831	5306831	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	5	5306831	5306831	C	T	SNP	ADAMTS16	ENST00000274181	human	ensembl	74_37	+1	known	missense	c.3401	p.P1134L	1.000	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_ADAM_spacer1,pfam_Peptidase_M12B_N,pfam_Peptidase_M12B,pfam_Thrombospondin_1_rpt,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS16	HGNC	ENSG00000145536				25	0	0	16	7	30.4348
CDC20B	0	genome.wustl.edu	37	5	54423154	54423154	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	5	54423154	54423154	C	T	SNP	CDC20B	ENST00000296733	human	ensembl	74_37	-1	known	missense	c.920	p.R307Q	0.982	superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	CDC20B	HGNC	ENSG00000164287				219	0	0	124	25	16.7785
RAB3C	0	genome.wustl.edu	37	5	58120900	58120900	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	5	58120900	58120900	C	T	SNP	RAB3C	ENST00000282878	human	ensembl	74_37	+1	known	missense	c.407	p.A136V	1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_SRP_receptor_beta_su,pfam_Gtr1_RagA,pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB3C	HGNC	ENSG00000152932				144	0	0	73	18	19.7802
ERBB2IP	0	genome.wustl.edu	37	5	65319175	65319175	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	5	65319175	65319175	C	A	SNP	ERBB2IP	ENST00000284037	human	ensembl	74_37	+1	known	missense	c.655	p.L219M	1.000	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,pfam_PDZ,superfamily_PDZ,smart_Leu-rich_rpt_typical-subtyp,smart_PDZ,pfscan_PDZ	-	no_errors	ERBB2IP	HGNC	ENSG00000112851				225	0	0	121	17	12.3188
CCDC125	0	genome.wustl.edu	37	5	68590716	68590716	+	Silent	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	5	68590716	68590716	G	A	SNP	CCDC125	ENST00000396496	human	ensembl	74_37	-1	known	silent	c.828	p.L276	0.935	NULL	NULL	-	no_errors	CCDC125	HGNC	ENSG00000183323				237	0	0	129	44	25.4335
GTF2H2C	0	genome.wustl.edu	37	5	68875669	68875669	+	Silent	SNP	T	T	C			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	5	68875669	68875669	T	C	SNP	GTF2H2C	ENST00000380729	human	ensembl	74_37	+1	known	silent	c.735	p.S245	0.997	pfam_Ssl1-like,pirsf_TFIIH_SSL1/p44	pfam_Ssl1-like,pfam_TFIIH_C1-like_dom,smart_VWF_A,pirsf_TFIIH_SSL1/p44,pfscan_VWF_A,tigrfam_TFIIH_SSL1/p44	-	no_errors	GTF2H2C	HGNC	ENSG00000183474				542	0	0	324	76	19
CARTPT	0	genome.wustl.edu	37	5	71015123	71015123	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	5	71015123	71015123	G	A	SNP	CARTPT	ENST00000296777	human	ensembl	74_37	+1	known	missense	c.3	p.M1I	1.000	pfam_CART	pfam_CART,superfamily_CART	-	no_errors	CARTPT	HGNC	ENSG00000164326				148	0	0	103	18	14.876
ZNF366	0	genome.wustl.edu	37	5	71756924	71756924	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	5	71756924	71756924	C	T	SNP	ZNF366	ENST00000318442	human	ensembl	74_37	-1	known	missense	c.400	p.V134M	0.997	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF366	HGNC	ENSG00000178175				355	1	0.280899	191	49	20.4167
EDIL3	0	genome.wustl.edu	37	5	83476311	83476311	+	Silent	SNP	A	A	G			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	5	83476311	83476311	A	G	SNP	EDIL3	ENST00000296591	human	ensembl	74_37	-1	known	silent	c.255	p.N85	1.000	pfam_EG-like_dom,pfam_EGF_extracell,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom	pfam_Coagulation_fac_5/8-C_type_dom,pfam_EG-like_dom,pfam_EGF_extracell,superfamily_Galactose-bd-like,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_Coagulation_fac_5/8-C_type_dom,pfscan_EG-like_dom,pfscan_Coagulation_fac_5/8-C_type_dom	-	no_errors	EDIL3	HGNC	ENSG00000164176				51	0	0	30	4	11.7647
ZDHHC11	0	genome.wustl.edu	37	5	840720	840720	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	5	840720	840720	G	A	SNP	ZDHHC11	ENST00000283441	human	ensembl	74_37	-1	known	missense	c.674	p.P225L	0.018	NULL	pfam_Znf_DHHC_palmitoyltrfase,pfscan_Znf_DHHC_palmitoyltrfase	-	no_errors	ZDHHC11	HGNC	ENSG00000188818				792	0	0	522	71	11.973
CETN3	0	genome.wustl.edu	37	5	89695208	89695208	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	5	89695208	89695208	T	C	SNP	CETN3	ENST00000283122	human	ensembl	74_37	-1	known	missense	c.427	p.I143V	1.000	pfam_EF_hand_dom,smart_EF_hand_dom,pfscan_EF_hand_dom	pfam_EF_hand_dom,smart_EF_hand_dom,pfscan_EF_hand_dom	-	no_errors	CETN3	HGNC	ENSG00000153140				141	0	0	70	10	12.5
MBLAC2	0	genome.wustl.edu	37	5	89757254	89757254	+	Silent	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	5	89757254	89757254	G	A	SNP	MBLAC2	ENST00000316610	human	ensembl	74_37	-1	known	silent	c.570	p.V190	0.066	pfam_Beta-lactamas-like,smart_Beta-lactamas-like	pfam_Beta-lactamas-like,smart_Beta-lactamas-like	-	no_errors	MBLAC2	HGNC	ENSG00000176055				135	0	0	82	20	19.6078
SEMA5A	0	genome.wustl.edu	37	5	9154620	9154620	+	Silent	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	5	9154620	9154620	G	A	SNP	SEMA5A	ENST00000382496	human	ensembl	74_37	-1	known	silent	c.1461	p.C487	1.000	superfamily_Plexin-like_fold,smart_Plexin-like_fold	pfam_Semap_dom,pfam_Thrombospondin_1_rpt,superfamily_Semap_dom,superfamily_Thrombospondin_1_rpt,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_Thrombospondin_1_rpt,pfscan_Semap_dom,pfscan_Thrombospondin_1_rpt	-	no_errors	SEMA5A	HGNC	ENSG00000112902				92	0	0	70	18	20.4545
SPATA9	0	genome.wustl.edu	37	5	94994442	94994442	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	5	94994442	94994442	G	A	SNP	SPATA9	ENST00000274432	human	ensembl	74_37	-1	known	missense	c.650	p.P217L	0.263	NULL	NULL	-	no_errors	SPATA9	HGNC	ENSG00000145757				82	0	0	53	13	19.697
LNPEP	0	genome.wustl.edu	37	5	96328734	96328734	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	5	96328734	96328734	G	A	SNP	LNPEP	ENST00000231368	human	ensembl	74_37	+1	known	missense	c.1147	p.V383I	1.000	pfam_Peptidase_M1_N	pfam_Peptidase_M1_N,prints_Peptidase_M1_N	-	no_errors	LNPEP	HGNC	ENSG00000113441				174	0	0	101	24	19.2
ASCC3	0	genome.wustl.edu	37	6	101053555	101053555	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	6	101053555	101053555	C	T	SNP	ASCC3	ENST00000369162	human	ensembl	74_37	-1	known	missense	c.5066	p.R1689H	1.000	pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_C,pfscan_Helicase_C	pfam_Sec63-dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase/UvrB_dom,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_AAA+_ATPase,smart_Helicase_C,smart_Sec63-dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	ASCC3	HGNC	ENSG00000112249				58	0	0	51	8	13.5593
WASF1	0	genome.wustl.edu	37	6	110423044	110423044	+	Silent	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	6	110423044	110423044	C	T	SNP	WASF1	ENST00000359451	human	ensembl	74_37	-1	known	silent	c.1269	p.L423	0.999	NULL	pfam_WH2_dom,smart_WH2_dom,pfscan_WH2_dom	-	no_errors	WASF1	HGNC	ENSG00000112290				140	0	0	97	43	30.7143
KIAA1919	0	genome.wustl.edu	37	6	111583579	111583579	+	Silent	SNP	T	T	C			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	6	111583579	111583579	T	C	SNP	KIAA1919	ENST00000368847	human	ensembl	74_37	+1	known	silent	c.147	p.S49	1.000	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	-	no_errors	KIAA1919	HGNC	ENSG00000173214				489	2	0.407332	293	182	38.3158
ZUFSP	0	genome.wustl.edu	37	6	116966982	116966982	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	6	116966982	116966982	T	C	SNP	ZUFSP	ENST00000368576	human	ensembl	74_37	-1	known	missense	c.1584	p.I528M	0.002	pfam_Peptidase_C78_UfSP1/2	pfam_Peptidase_C78_UfSP1/2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZUFSP	HGNC	ENSG00000153975				267	0	0	152	79	34.1991
FAM184A	0	genome.wustl.edu	37	6	119297156	119297156	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	6	119297156	119297156	G	A	SNP	FAM184A	ENST00000338891	human	ensembl	74_37	-1	known	missense	c.2509	p.R837W	0.995	NULL	superfamily_Prefoldin	-	no_errors	FAM184A	HGNC	ENSG00000111879				109	0	0	82	10	10.8696
LAMA2	0	genome.wustl.edu	37	6	129663524	129663524	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	6	129663524	129663524	C	T	SNP	LAMA2	ENST00000421865	human	ensembl	74_37	+1	known	nonsense	c.4348	p.R1450*	1.000	pfam_EGF_laminin,smart_EGF_laminin,smart_EG-like_dom,pfscan_EGF_laminin	pfam_Laminin_G,pfam_EGF_laminin,pfam_Laminin_N,pfam_Laminin_I,pfam_Laminin_B_type_IV,pfam_Laminin_II,superfamily_ConA-like_lec_gl_sf,superfamily_Galactose-bd-like,superfamily_t-SNARE,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	LAMA2	HGNC	ENSG00000196569				200	0	0	119	23	16.1972
TAAR6	0	genome.wustl.edu	37	6	132891518	132891518	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	6	132891518	132891518	G	T	SNP	TAAR6	ENST00000275198	human	ensembl	74_37	+1	known	missense	c.58	p.G20W	0.001	NULL	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_TAAR_fam	-	no_errors	TAAR6	HGNC	ENSG00000146383				134	0	0	100	19	15.9664
FUCA2	0	genome.wustl.edu	37	6	143825243	143825243	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	6	143825243	143825243	A	G	SNP	FUCA2	ENST00000002165	human	ensembl	74_37	-1	known	missense	c.559	p.F187L	1.000	pfam_Glyco_hydro_29,superfamily_Glycoside_hydrolase_SF,smart_Glyco_hydro_29,pirsf_Glyco_hydro_29_sub,prints_Glyco_hydro_29_sub	pfam_Glyco_hydro_29,superfamily_Glycoside_hydrolase_SF,smart_Glyco_hydro_29,pirsf_Glyco_hydro_29_sub,prints_Glyco_hydro_29_sub	-	no_errors	FUCA2	HGNC	ENSG00000001036				151	1	0.657895	119	24	16.7832
GRM1	0	genome.wustl.edu	37	6	146720745	146720745	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	6	146720745	146720745	G	A	SNP	GRM1	ENST00000282753	human	ensembl	74_37	+1	known	missense	c.2570	p.R857H	1.000	NULL	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_Metabotropic_Glu_rcpt_Homer-bd,pfam_GPCR_3_9-Cys_dom,superfamily_Peripla_BP_I,pfscan_GPCR_3_C,prints_GPCR_3_mtglu_rcpt_1,prints_GPCR_3,prints_GPCR_3_mtglu_rcpt,prints_GPCR_3_mtglu_rcpt_5	-	no_errors	GRM1	HGNC	ENSG00000152822				76	0	0	51	9	15
SYNE1	0	genome.wustl.edu	37	6	152777037	152777037	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	6	152777037	152777037	A	G	SNP	SYNE1	ENST00000265368	human	ensembl	74_37	-1	known	missense	c.2711	p.I904T	0.012	superfamily_Calpain_domain_III,superfamily_ABC1_TM_dom	pfam_Spectrin_repeat,pfam_CH-domain,pfam_KASH,superfamily_CH-domain,superfamily_Calpain_domain_III,superfamily_ABC1_TM_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE1	HGNC	ENSG00000131018				111	0	0	56	31	35.6322
TIAM2	0	genome.wustl.edu	37	6	155450812	155450812	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	6	155450812	155450812	C	T	SNP	TIAM2	ENST00000456144	human	ensembl	74_37	+1	known	missense	c.455	p.P152L	0.000	NULL	pfam_DH-domain,pfam_Pleckstrin_homology,pfam_PDZ,superfamily_DH-domain,superfamily_PDZ,superfamily_HR1_rho-bd,smart_Pleckstrin_homology,smart_Raf-like_ras-bd,smart_PDZ,smart_DH-domain,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_Raf-like_ras-bd,pfscan_DH-domain	-	no_errors	TIAM2	HGNC	ENSG00000146426				120	0	0	68	25	26.8817
ARID1B	0	genome.wustl.edu	37	6	157522469	157522469	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	6	157522469	157522469	C	T	SNP	ARID1B	ENST00000367148	human	ensembl	74_37	+1	known	nonsense	c.4861	p.Q1621*	1.000	NULL	pfam_DUF3518,pfam_ARID/BRIGHT_DNA-bd,superfamily_ARID/BRIGHT_DNA-bd,superfamily_ARM-type_fold,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID1B	HGNC	ENSG00000049618				296	0	0	193	87	31.0714
SYNJ2	0	genome.wustl.edu	37	6	158483059	158483059	+	Silent	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	6	158483059	158483059	G	A	SNP	SYNJ2	ENST00000355585	human	ensembl	74_37	+1	known	silent	c.990	p.T330	1.000	pfam_Syja_N,pfscan_Syja_N	pfam_Syja_N,pfam_DUF1866,pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase,smart_IPPc,pfscan_RRM_dom,pfscan_Syja_N	-	no_errors	SYNJ2	HGNC	ENSG00000078269				506	0	0	333	169	33.6653
FNDC1	0	genome.wustl.edu	37	6	159653370	159653370	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	6	159653370	159653370	G	A	SNP	FNDC1	ENST00000297267	human	ensembl	74_37	+1	known	missense	c.1826	p.R609H	0.000	NULL	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	FNDC1	HGNC	ENSG00000164694				40	0	0	32	4	11.1111
SLC22A2	0	genome.wustl.edu	37	6	160679392	160679392	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	6	160679392	160679392	G	A	SNP	SLC22A2	ENST00000366953	human	ensembl	74_37	-1	known	missense	c.398	p.S133L	1.000	pfscan_MFS_dom,tigrfam_Orgcat_transp	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Orgcat_transp	-	no_errors	SLC22A2	HGNC	ENSG00000112499				181	0	0	155	34	17.9894
AGPAT4	0	genome.wustl.edu	37	6	161574397	161574397	+	Silent	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	6	161574397	161574397	C	T	SNP	AGPAT4	ENST00000320285	human	ensembl	74_37	-1	known	silent	c.645	p.V215	1.000	pfam_Plipid/glycerol_acylTrfase	pfam_Plipid/glycerol_acylTrfase,smart_Plipid/glycerol_acylTrfase	-	no_errors	AGPAT4	HGNC	ENSG00000026652				21	0	0	12	6	33.3333
HIST1H2AA	0	genome.wustl.edu	37	6	25726410	25726410	+	Silent	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	6	25726410	25726410	G	A	SNP	HIST1H2AA	ENST00000297012	human	ensembl	74_37	-1	known	silent	c.346	p.L116	1.000	superfamily_Histone-fold,smart_Histone_H2A,prints_Histone_H2A	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2A,prints_Histone_H2A	-	no_errors	HIST1H2AA	HGNC	ENSG00000164508				437	0	0	329	69	17.3367
BTN2A1	0	genome.wustl.edu	37	6	26459819	26459819	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	6	26459819	26459819	C	T	SNP	BTN2A1	ENST00000312541	human	ensembl	74_37	+1	known	missense	c.193	p.R65W	0.999	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	pfam_SPRY_rcpt,pfam_Ig_V-set,pfam_CD80_C2-set,superfamily_ConA-like_lec_gl_sf,smart_Ig_sub,smart_Ig_V-set_subgr,smart_PRY,smart_SPla/RYanodine_receptor_subgr,prints_Butyrophylin,pfscan_B30.2/SPRY,pfscan_Ig-like_dom	-	no_errors	BTN2A1	HGNC	ENSG00000112763				105	0	0	112	8	6.66667
HIST1H4I	0	genome.wustl.edu	37	6	27107305	27107305	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	6	27107305	27107305	A	G	SNP	HIST1H4I	ENST00000354348	human	ensembl	74_37	+1	known	missense	c.218	p.Y73C	1.000	pfam_Histone_core_D,pfam_TAF_TATA-bd,superfamily_Histone-fold,smart_Histone_H4,smart_TAF_TATA-bd,prints_Histone_H4	pfam_Histone_core_D,pfam_TAF_TATA-bd,superfamily_Histone-fold,smart_Histone_H4,smart_TAF_TATA-bd,prints_Histone_H4	-	no_errors	HIST1H4I	HGNC	ENSG00000198339				135	0	0	115	17	12.8788
ZNF165	0	genome.wustl.edu	37	6	28057166	28057166	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	6	28057166	28057166	G	T	SNP	ZNF165	ENST00000377325	human	ensembl	74_37	+1	known	missense	c.1376	p.S459I	0.059	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF165	HGNC	ENSG00000197279				106	0	0	58	29	33.3333
RNF39	0	genome.wustl.edu	37	6	30043318	30043318	+	Silent	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	6	30043318	30043318	C	T	SNP	RNF39	ENST00000244360	human	ensembl	74_37	-1	known	silent	c.249	p.E83	1.000	NULL	pfam_SPRY_rcpt,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl_sf,smart_Znf_RING,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	RNF39	HGNC	ENSG00000204618				19	0	0	13	6	31.5789
NQO2	0	genome.wustl.edu	37	6	3012850	3012850	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	6	3012850	3012850	C	T	SNP	NQO2	ENST00000338130	human	ensembl	74_37	+1	known	missense	c.245	p.A82V	0.001	pfam_Flavodoxin_fold,pfam_FMN_Rdtase-like	pfam_Flavodoxin_fold,pfam_FMN_Rdtase-like	-	no_errors	NQO2	HGNC	ENSG00000124588				103	0	0	73	37	33.6364
DPCR1	0	genome.wustl.edu	37	6	30919763	30919763	+	Silent	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	6	30919763	30919763	G	A	SNP	DPCR1	ENST00000304311	human	ensembl	74_37	+1	known	silent	c.48	p.T16	0.000	NULL	NULL	-	no_errors	DPCR1	HGNC	ENSG00000168631				142	0	0	94	20	17.5439
POU5F1	0	genome.wustl.edu	37	6	31132537	31132537	+	Silent	SNP	T	T	C			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	6	31132537	31132537	T	C	SNP	POU5F1	ENST00000259915	human	ensembl	74_37	-1	known	silent	c.924	p.G308	0.576	NULL	pfam_POU_specific,pfam_Homeobox_dom,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,smart_POU_specific,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_POU_specific,prints_POU	-	no_errors	POU5F1	HGNC	ENSG00000204531				23	0	0	22	6	21.4286
MICA	0	genome.wustl.edu	37	6	31378554	31378554	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	6	31378554	31378554	A	G	SNP	MICA	ENST00000449934	human	ensembl	74_37	+1	known	missense	c.305	p.H102R	0.000	pfam_MHC_I_a_a1/a2,superfamily_MHC_I/II-like_Ag-recog	pfam_MHC_I_a_a1/a2,pfam_Ig_C1-set,superfamily_MHC_I/II-like_Ag-recog,smart_Ig_C1-set,pfscan_Ig-like_dom	-	no_errors	MICA	HGNC	ENSG00000204520				18	0	0	17	2	10.5263
LTA	0	genome.wustl.edu	37	6	31541350	31541350	+	Silent	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	6	31541350	31541350	G	A	SNP	LTA	ENST00000418386	human	ensembl	74_37	+1	known	silent	c.498	p.S166	0.056	pfam_TNF_dom,superfamily_Tumour_necrosis_fac-like_dom,smart_TNF_dom,pfscan_TNF_dom,prints_TNF_beta,prints_TNF	pfam_TNF_dom,superfamily_Tumour_necrosis_fac-like_dom,smart_TNF_dom,pfscan_TNF_dom,prints_TNF_beta,prints_TNF	-	no_errors	LTA	HGNC	ENSG00000226979				413	2	0.481928	251	140	35.8056
TUBB2A	0	genome.wustl.edu	37	6	3154797	3154797	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	6	3154797	3154797	C	T	SNP	TUBB2A	ENST00000333628	human	ensembl	74_37	-1	known	missense	c.638	p.R213H	1.000	pfam_Tubulin_FtsZ_GTPase,superfamily_Tubulin_FtsZ_GTPase,smart_Tubulin_FtsZ_GTPase,prints_Beta_tubulin,prints_Delta_tubulin,prints_Alpha_tubulin	pfam_Tubulin_FtsZ_GTPase,pfam_Tubulin/FtsZ_2-layer-sand-dom,pfam_Misato_II_tubulin-like,superfamily_Tubulin_FtsZ_GTPase,superfamily_Tub_FtsZ_C,smart_Tubulin_FtsZ_GTPase,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Beta_tubulin,prints_Tubulin,prints_Epsilon_tubulin,prints_Gamma_tubulin,prints_Delta_tubulin,prints_Alpha_tubulin	-	no_errors	TUBB2A	HGNC	ENSG00000137267				173	0	0	135	31	18.6747
C6orf47	0	genome.wustl.edu	37	6	31627258	31627258	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	6	31627258	31627258	C	T	SNP	C6orf47	ENST00000375911	human	ensembl	74_37	-1	known	missense	c.467	p.G156D	1.000	NULL	NULL	-	no_errors	C6orf47	HGNC	ENSG00000204439				181	0	0	150	35	18.9189
DDAH2	0	genome.wustl.edu	37	6	31696024	31696024	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	6	31696024	31696024	G	A	SNP	DDAH2	ENST00000375787	human	ensembl	74_37	-1	known	missense	c.517	p.R173C	1.000	pfam_Amidino_trans	pfam_Amidino_trans	-	no_errors	DDAH2	HGNC	ENSG00000213722				94	0	0	52	18	25.7143
SKIV2L	0	genome.wustl.edu	37	6	31936718	31936718	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	6	31936718	31936718	T	C	SNP	SKIV2L	ENST00000375394	human	ensembl	74_37	+1	known	missense	c.3251	p.M1084T	1.000	pfam_DSH_C,pirsf_RNA_helicase_ATP-dep_SK12/DOB1	pfam_DSH_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pirsf_RNA_helicase_ATP-dep_SK12/DOB1,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	SKIV2L	HGNC	ENSG00000204351				116	0	0	88	22	20
C4B	0	genome.wustl.edu	37	6	31997538	31997538	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	6	31997538	31997538	G	A	SNP	C4B	ENST00000435363	human	ensembl	74_37	+1	known	missense	c.3872	p.R1291H	0.003	pfam_A2M_comp,superfamily_Terpenoid_cyclase/PrenylTrfase	pfam_A2M_comp,pfam_A-macroglobulin_rcpt-bd,pfam_Macroglobln_a2,pfam_A2M_N_2,pfam_Netrin_module_non-TIMP,pfam_A2M_N,pfam_MacrogloblnA2_thiol-ester-bond,pfam_Anaphylatoxin/fibulin,superfamily_Terpenoid_cyclase/PrenylTrfase,superfamily_A-macroglobulin_rcpt-bd,superfamily_TIMP-like_OB-fold,superfamily_Anaphylatoxin_comp_syst,superfamily_Invasin/intimin_cell_adhesion,smart_Anaphylatoxin/fibulin,smart_Netrin_module_non-TIMP,pfscan_Anaphylatoxin/fibulin,pfscan_Netrin_domain,prints_Anaphylatoxn_comp_syst_dom	-	no_errors	C4B	HGNC	ENSG00000224389				162	0	0	117	13	10
TNXB	0	genome.wustl.edu	37	6	32023661	32023661	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	6	32023661	32023661	G	A	SNP	TNXB	ENST00000375247	human	ensembl	74_37	-1	known	missense	c.8434	p.R2812C	0.908	superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Fibrinogen_a/b/g_C_dom,pfam_EGF_extracell,superfamily_Fibrinogen_a/b/g_C_dom,superfamily_Fibronectin_type3,smart_EG-like_dom,smart_Fibronectin_type3,smart_Fibrinogen_a/b/g_C_dom,pfscan_EG-like_dom,pfscan_Fibronectin_type3	-	no_errors	TNXB	HGNC	ENSG00000168477				102	0	0	80	14	14.8936
RING1	0	genome.wustl.edu	37	6	33178996	33178996	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	6	33178996	33178996	G	A	SNP	RING1	ENST00000374656	human	ensembl	74_37	+1	known	missense	c.517	p.E173K	1.000	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RING1	HGNC	ENSG00000204227				360	0	0	279	46	14.1538
SYNGAP1	0	genome.wustl.edu	37	6	33411215	33411215	+	Silent	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	6	33411215	33411215	C	T	SNP	SYNGAP1	ENST00000418600	human	ensembl	74_37	+1	known	silent	c.2886	p.H962	0.995	pfam_DUF3498	pfam_DUF3498,pfam_RasGAP,pfam_C2_dom,superfamily_Rho_GTPase_activation_prot,superfamily_C2_dom,smart_Pleckstrin_homology,smart_C2_dom,smart_RasGAP,pfscan_Pleckstrin_homology,pfscan_RasGAP	-	no_errors	SYNGAP1	HGNC	ENSG00000197283				366	1	0.27248	299	57	16.0112
SYNGAP1	0	genome.wustl.edu	37	6	33411218	33411218	+	Silent	SNP	T	T	C			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	6	33411218	33411218	T	C	SNP	SYNGAP1	ENST00000418600	human	ensembl	74_37	+1	known	silent	c.2889	p.H963	1.000	pfam_DUF3498	pfam_DUF3498,pfam_RasGAP,pfam_C2_dom,superfamily_Rho_GTPase_activation_prot,superfamily_C2_dom,smart_Pleckstrin_homology,smart_C2_dom,smart_RasGAP,pfscan_Pleckstrin_homology,pfscan_RasGAP	-	no_errors	SYNGAP1	HGNC	ENSG00000197283				372	0	0	299	57	16.0112
HMGA1	0	genome.wustl.edu	37	6	34208540	34208540	+	RNA	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	6	34208540	34208540	C	T	SNP	HMGA1	ENST00000478214	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.024	-	-	-	no_errors	HMGA1	HGNC	ENSG00000137309				58	0	0	41	12	22.6415
DUSP22	0	genome.wustl.edu	37	6	348224	348224	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	6	348224	348224	G	A	SNP	DUSP22	ENST00000419235	human	ensembl	74_37	+1	known	missense	c.385	p.V129M	0.946	pfam_Dual-sp_phosphatase_cat-dom,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Dual-sp_phosphatase_subgr_cat	pfam_Dual-sp_phosphatase_cat-dom,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Dual-sp_phosphatase_subgr_cat,prints_Atypical_DUSP,pfscan_Tyr/Dual-sp_Pase,pfscan_Dual-sp_phosphatase_subgr_cat	-	no_errors	DUSP22	HGNC	ENSG00000112679				291	0	0	258	20	7.19424
UHRF1BP1	0	genome.wustl.edu	37	6	34825969	34825969	+	Silent	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	6	34825969	34825969	G	A	SNP	UHRF1BP1	ENST00000192788	human	ensembl	74_37	+1	known	silent	c.1836	p.A612	0.000	NULL	NULL	-	no_errors	UHRF1BP1	HGNC	ENSG00000065060				169	1	0.588235	121	50	29.2398
CLPS	0	genome.wustl.edu	37	6	35763018	35763018	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	6	35763018	35763018	G	A	SNP	CLPS	ENST00000259938	human	ensembl	74_37	-1	known	missense	c.244	p.R82C	0.989	pfam_Colipase_C,smart_Colipase,prints_Colipase	pfam_Colipase_C,pfam_Colipase_N,smart_Colipase,prints_Colipase	-	no_errors	CLPS	HGNC	ENSG00000137392				64	0	0	36	19	34.5455
PPIL1	0	genome.wustl.edu	37	6	36823635	36823635	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	6	36823635	36823635	C	T	SNP	PPIL1	ENST00000373699	human	ensembl	74_37	-1	known	missense	c.455	p.R152H	0.999	pfam_Cyclophilin-like_PPIase_dom,superfamily_Cyclophilin-like_PPIase_dom,pfscan_Cyclophilin-like_PPIase_dom	pfam_Cyclophilin-like_PPIase_dom,superfamily_Cyclophilin-like_PPIase_dom,pfscan_Cyclophilin-like_PPIase_dom,prints_Cyclophilin-like_PPIase_dom	-	no_errors	PPIL1	HGNC	ENSG00000137168				185	0	0	111	48	30.1887
DNAH8	0	genome.wustl.edu	37	6	38702284	38702284	+	Silent	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	6	38702284	38702284	G	A	SNP	DNAH8	ENST00000449981	human	ensembl	74_37	+1	known	silent	c.645	p.G215	0.675	NULL	pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH8	HGNC	ENSG00000124721				137	1	0.724638	102	19	15.7025
DNAH8	0	genome.wustl.edu	37	6	38941437	38941437	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	6	38941437	38941437	G	T	SNP	DNAH8	ENST00000359357	human	ensembl	74_37	+1	known	missense	c.11875	p.G3959C	1.000	pfam_Dynein_heavy_dom	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH8	HGNC	ENSG00000124721				76	0	0	44	8	15.3846
DAAM2	0	genome.wustl.edu	37	6	39828752	39828752	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	6	39828752	39828752	C	T	SNP	DAAM2	ENST00000274867	human	ensembl	74_37	+1	known	missense	c.217	p.P73S	1.000	pfam_GTPase-bd,superfamily_ARM-type_fold	pfam_FH2_Formin,pfam_FH3_dom,pfam_GTPase-bd,superfamily_ARM-type_fold,smart_FH2_Formin	-	no_errors	DAAM2	HGNC	ENSG00000146122				43	0	0	18	5	21.7391
DAAM2	0	genome.wustl.edu	37	6	39856508	39856508	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	6	39856508	39856508	A	T	SNP	DAAM2	ENST00000274867	human	ensembl	74_37	+1	known	missense	c.2114	p.Q705L	1.000	pfam_FH2_Formin,smart_FH2_Formin	pfam_FH2_Formin,pfam_FH3_dom,pfam_GTPase-bd,superfamily_ARM-type_fold,smart_FH2_Formin	-	no_errors	DAAM2	HGNC	ENSG00000146122				63	0	0	49	18	26.8657
TREML2	0	genome.wustl.edu	37	6	41162312	41162312	+	Silent	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	6	41162312	41162312	G	A	SNP	TREML2	ENST00000483722	human	ensembl	74_37	-1	known	silent	c.636	p.T212	0.003	NULL	pfam_Ig_V-set,pfscan_Ig-like_dom	-	no_errors	TREML2	HGNC	ENSG00000112195				61	0	0	46	15	24.5902
TREML3P	0	genome.wustl.edu	37	6	41184896	41184896	+	RNA	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	6	41184896	41184896	C	T	SNP	TREML3P	ENST00000564680	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	TREML3P	HGNC	ENSG00000184106				190	0	0	134	32	19.2771
C6orf201	0	genome.wustl.edu	37	6	4130506	4130506	+	RNA	SNP	A	A	G			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	6	4130506	4130506	A	G	SNP	C6orf201	ENST00000496987	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	C6orf201	HGNC	ENSG00000185689				50	0	0	45	14	23.7288
KLHDC3	0	genome.wustl.edu	37	6	42986253	42986253	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	6	42986253	42986253	C	A	SNP	KLHDC3	ENST00000326974	human	ensembl	74_37	+1	known	missense	c.692	p.P231Q	0.928	pfam_Kelch_2,pfam_Kelch_1	pfam_Kelch_2,pfam_Kelch_1	-	no_errors	KLHDC3	HGNC	ENSG00000124702				231	0	0	188	33	14.9321
PTK7	0	genome.wustl.edu	37	6	43110015	43110015	+	Silent	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	6	43110015	43110015	G	A	SNP	PTK7	ENST00000230419	human	ensembl	74_37	+1	known	silent	c.2025	p.T675	0.006	pfam_Ig_I-set,smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Immunoglobulin,pfam_Prot_kinase_dom,pfam_Ig_V-set,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	PTK7	HGNC	ENSG00000112655				104	0	0	61	9	12.8571
CUL9	0	genome.wustl.edu	37	6	43152098	43152098	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	6	43152098	43152098	G	A	SNP	CUL9	ENST00000252050	human	ensembl	74_37	+1	known	missense	c.50	p.R17Q	0.885	NULL	pfam_Cullin_N,pfam_CPH_domain,pfam_Znf_C6HC,pfam_APC_su10/DOC_dom,superfamily_Galactose-bd-like,superfamily_Cullin_homology,superfamily_ARM-type_fold,superfamily_UBA-like,smart_Cullin_neddylation_domain,smart_Znf_C6HC,pfscan_Znf_RING,pfscan_Cullin_homology	-	no_errors	CUL9	HGNC	ENSG00000112659				34	0	0	24	11	31.4286
TDRD6	0	genome.wustl.edu	37	6	46657163	46657163	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	6	46657163	46657163	G	A	SNP	TDRD6	ENST00000316081	human	ensembl	74_37	+1	known	missense	c.1298	p.R433H	0.072	NULL	pfam_Tudor,smart_Tudor,pfscan_Tudor	-	no_errors	TDRD6	HGNC	ENSG00000180113				142	0	0	91	45	33.0882
TDRD6	0	genome.wustl.edu	37	6	46657579	46657579	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	6	46657579	46657579	C	T	SNP	TDRD6	ENST00000316081	human	ensembl	74_37	+1	known	nonsense	c.1714	p.R572*	0.997	pfam_Tudor,smart_Tudor,pfscan_Tudor	pfam_Tudor,smart_Tudor,pfscan_Tudor	-	no_errors	TDRD6	HGNC	ENSG00000180113				364	0	0	230	82	26.2821
PKHD1	0	genome.wustl.edu	37	6	51890007	51890007	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	6	51890007	51890007	C	T	SNP	PKHD1	ENST00000371117	human	ensembl	74_37	-1	known	missense	c.4601	p.S1534N	0.245	pfam_IPT,superfamily_Ig_E-set	pfam_IPT,pfam_G8_domain,superfamily_Ig_E-set,superfamily_Pectin_lyase_fold/virulence,smart_IPT,smart_PbH1	-	no_errors	PKHD1	HGNC	ENSG00000170927				117	0	0	89	11	11
GCM1	0	genome.wustl.edu	37	6	52993662	52993662	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	6	52993662	52993662	T	C	SNP	GCM1	ENST00000259803	human	ensembl	74_37	-1	known	missense	c.653	p.Y218C	0.447	NULL	pfam_Tscrpt_reg_GCM_motif,superfamily_Tscrpt_reg_GCM_motif,pfscan_Tscrpt_reg_GCM_motif	-	no_errors	GCM1	HGNC	ENSG00000137270				180	0	0	120	26	17.8082
TINAG	0	genome.wustl.edu	37	6	54208091	54208091	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	6	54208091	54208091	C	T	SNP	TINAG	ENST00000259782	human	ensembl	74_37	+1	known	missense	c.692	p.T231I	0.998	smart_Peptidase_C1A_C	pfam_Peptidase_C1A_C,pfam_Somatomedin_B_dom,smart_Somatomedin_B_dom,smart_Peptidase_C1A_C,pfscan_Somatomedin_B_dom	-	no_errors	TINAG	HGNC	ENSG00000137251				113	0	0	90	20	18.1818
BMP5	0	genome.wustl.edu	37	6	55620357	55620357	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	6	55620357	55620357	C	T	SNP	BMP5	ENST00000370830	human	ensembl	74_37	-1	known	missense	c.1339	p.V447I	1.000	pfam_TGF-b_C,smart_TGF-b_C	pfam_TGF-b_N,pfam_TGF-b_C,smart_TGF-b_C	-	no_errors	BMP5	HGNC	ENSG00000112175				95	0	0	53	19	26.3889
COL21A1	0	genome.wustl.edu	37	6	55939064	55939064	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	6	55939064	55939064	C	T	SNP	COL21A1	ENST00000244728	human	ensembl	74_37	-1	known	missense	c.1931	p.G644D	0.999	NULL	pfam_Collagen,pfam_VWF_A,superfamily_ConA-like_lec_gl_sf,smart_VWF_A,smart_Laminin_G,pfscan_VWF_A	-	no_errors	COL21A1	HGNC	ENSG00000124749				167	0	0	91	39	30
RREB1	0	genome.wustl.edu	37	6	7182150	7182150	+	Silent	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	6	7182150	7182150	G	A	SNP	RREB1	ENST00000379938	human	ensembl	74_37	+1	known	silent	c.6	p.T2	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	RREB1	HGNC	ENSG00000124782				407	0	0	336	61	15.3652
COL12A1	0	genome.wustl.edu	37	6	75898209	75898209	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	6	75898209	75898209	G	T	SNP	COL12A1	ENST00000322507	human	ensembl	74_37	-1	known	missense	c.866	p.S289Y	1.000	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_Fibronectin_type3,pfam_VWF_A,pfam_Collagen,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_VWF_A,smart_Laminin_G,pfscan_Fibronectin_type3,pfscan_VWF_A	-	no_errors	COL12A1	HGNC	ENSG00000111799				230	1	0.4329	118	54	31.3953
HTR1B	0	genome.wustl.edu	37	6	78172363	78172363	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	6	78172363	78172363	C	T	SNP	HTR1B	ENST00000369947	human	ensembl	74_37	-1	known	missense	c.758	p.R253Q	0.999	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_5HT1B_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_5HT1B_rcpt,prints_5HT_rcpt,prints_ADR_fam	-	no_errors	HTR1B	HGNC	ENSG00000135312				174	0	0	167	31	15.6566
TXNDC5	0	genome.wustl.edu	37	6	7889011	7889011	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	6	7889011	7889011	G	A	SNP	TXNDC5	ENST00000379757	human	ensembl	74_37	-1	known	missense	c.890	p.T297I	0.000	superfamily_Thioredoxin-like_fold	pfam_Thioredoxin_domain,superfamily_Thioredoxin-like_fold,prints_Thioredoxin,tigrfam_Disulphide_isomerase	-	no_errors	TXNDC5	HGNC	ENSG00000239264				330	0	0	249	46	15.5932
DOPEY1	0	genome.wustl.edu	37	6	83839167	83839167	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	6	83839167	83839167	C	T	SNP	DOPEY1	ENST00000349129	human	ensembl	74_37	+1	known	missense	c.2281	p.P761S	1.000	superfamily_ARM-type_fold	pfam_Dopey_N,superfamily_ARM-type_fold	-	no_errors	DOPEY1	HGNC	ENSG00000083097				125	0	0	76	15	16.4835
PM20D2	0	genome.wustl.edu	37	6	89871861	89871861	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	6	89871861	89871861	C	T	SNP	PM20D2	ENST00000275072	human	ensembl	74_37	+1	known	missense	c.1190	p.T397M	0.591	pirsf_Pept_M20D_amidohydro_pred	pfam_Peptidase_M20_dimer,pfam_Peptidase_M20,superfamily_Peptidase_M20_dimer,pirsf_Pept_M20D_amidohydro_pred	-	no_errors	PM20D2	HGNC	ENSG00000146281				250	0	0	122	72	37.1134
ZAN	0	genome.wustl.edu	37	7	100350276	100350276	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	7	100350276	100350276	C	T	SNP	ZAN	ENST00000546292	human	ensembl	74_37	+1	known	missense	c.2548	p.P850S	0.000	NULL	pfam_VWF_type-D,pfam_MAM_dom,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_ConA-like_lec_gl_sf,superfamily_TIL_dom,smart_MAM_dom,smart_VWC_out,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_MAM_dom	-	no_errors	ZAN	HGNC	ENSG00000146839				159	0	0	129	21	14
ACHE	0	genome.wustl.edu	37	7	100488914	100488914	+	Silent	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	7	100488914	100488914	C	T	SNP	ACHE	ENST00000302913	human	ensembl	74_37	-1	known	silent	c.1599	p.P533	0.019	pfam_CarbesteraseB	pfam_CarbesteraseB,pfam_AB_hydrolase_3,prints_Cholinesterase	-	no_errors	ACHE	HGNC	ENSG00000087085				106	0	0	101	6	5.60748
AP1S1	0	genome.wustl.edu	37	7	100799894	100799894	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	7	100799894	100799894	T	G	SNP	AP1S1	ENST00000337619	human	ensembl	74_37	+1	known	missense	c.23	p.F8C	1.000	pfam_AP_mu_sigma_su,superfamily_Longin-like_dom,pirsf_AP_complex_ssu	pfam_AP_mu_sigma_su,superfamily_Longin-like_dom,pirsf_AP_complex_ssu	-	no_errors	AP1S1	HGNC	ENSG00000106367				25	0	0	11	8	42.1053
PLOD3	0	genome.wustl.edu	37	7	100853710	100853710	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	7	100853710	100853710	G	C	SNP	PLOD3	ENST00000223127	human	ensembl	74_37	-1	known	missense	c.1516	p.L506V	1.000	NULL	pfam_Oxoglu/Fe-dep_dioxygenase,smart_Pro_4_hyd_alph	-	no_errors	PLOD3	HGNC	ENSG00000106397				48	0	0	42	4	8.69565
CLDN15	0	genome.wustl.edu	37	7	100880766	100880766	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	7	100880766	100880766	T	C	SNP	CLDN15	ENST00000308344	human	ensembl	74_37	-1	known	missense	c.97	p.T33A	1.000	pfam_PMP22/EMP/MP20/Claudin	pfam_PMP22/EMP/MP20/Claudin,prints_Claudin,prints_Claudin15	-	no_errors	CLDN15	HGNC	ENSG00000106404				43	0	0	50	4	7.40741
FBXL13	0	genome.wustl.edu	37	7	102518012	102518012	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	7	102518012	102518012	G	A	SNP	FBXL13	ENST00000313221	human	ensembl	74_37	-1	known	nonsense	c.1537	p.R513*	0.998	smart_Leu-rich_rpt_Cys-con_subtyp	smart_Leu-rich_rpt_Cys-con_subtyp,pfscan_F-box_dom	-	no_errors	FBXL13	HGNC	ENSG00000161040				69	0	0	38	32	45.7143
SYPL1	0	genome.wustl.edu	37	7	105739652	105739652	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	7	105739652	105739652	G	A	SNP	SYPL1	ENST00000011473	human	ensembl	74_37	-1	known	missense	c.200	p.A67V	0.000	pfam_Marvel,prints_Synaptophysin/porin	pfam_Marvel,prints_Synaptophysin/porin	-	no_errors	SYPL1	HGNC	ENSG00000008282				154	0	0	108	24	18.1818
PIK3CG	0	genome.wustl.edu	37	7	106509611	106509611	+	Silent	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	7	106509611	106509611	C	T	SNP	PIK3CG	ENST00000359195	human	ensembl	74_37	+1	known	silent	c.1605	p.T535	0.002	superfamily_ARM-type_fold	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_C2_dom,pfam_PI3K_Ras-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CG	HGNC	ENSG00000105851				181	0	0	108	50	31.6456
COG5	0	genome.wustl.edu	37	7	106871061	106871061	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	7	106871061	106871061	T	C	SNP	COG5	ENST00000297135	human	ensembl	74_37	-1	known	missense	c.2260	p.R754G	1.000	NULL	pfam_Cog5	-	no_errors	COG5	HGNC	ENSG00000164597				242	0	0	212	22	9.40171
GPR146	0	genome.wustl.edu	37	7	1098028	1098028	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	7	1098028	1098028	C	T	SNP	GPR146	ENST00000297468	human	ensembl	74_37	+1	known	missense	c.877	p.P293S	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	-	no_errors	GPR146	HGNC	ENSG00000164849				124	0	0	115	15	11.5385
LRRN3	0	genome.wustl.edu	37	7	110763732	110763732	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	7	110763732	110763732	A	G	SNP	LRRN3	ENST00000308478	human	ensembl	74_37	+1	known	missense	c.904	p.S302G	1.000	NULL	pfam_Ig_I-set,pfam_Leu-rich_rpt,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_LRR-contain_N,superfamily_Fibronectin_type3,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	LRRN3	HGNC	ENSG00000173114				177	0	0	100	56	35.8974
LRRN3	0	genome.wustl.edu	37	7	110764048	110764048	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	7	110764048	110764048	T	A	SNP	LRRN3	ENST00000308478	human	ensembl	74_37	+1	known	missense	c.1220	p.V407D	1.000	smart_Cys-rich_flank_reg_C	pfam_Ig_I-set,pfam_Leu-rich_rpt,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_LRR-contain_N,superfamily_Fibronectin_type3,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	LRRN3	HGNC	ENSG00000173114				155	0	0	87	39	30.9524
PTPRZ1	0	genome.wustl.edu	37	7	121653374	121653374	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	7	121653374	121653374	G	A	SNP	PTPRZ1	ENST00000393386	human	ensembl	74_37	+1	known	missense	c.4274	p.G1425D	0.956	NULL	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Carbonic_anhydrase_a,pfam_Fibronectin_type3,superfamily_Carbonic_anhydrase_a,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Carbonic_anhydrase_a,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRZ1	HGNC	ENSG00000106278				101	0	0	48	30	38.4615
ZNF800	0	genome.wustl.edu	37	7	127013401	127013401	+	Silent	SNP	A	A	G			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	7	127013401	127013401	A	G	SNP	ZNF800	ENST00000265827	human	ensembl	74_37	-1	known	silent	c.1989	p.L663	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF800	HGNC	ENSG00000048405				91	0	0	56	36	39.1304
ZNF800	0	genome.wustl.edu	37	7	127014560	127014560	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	7	127014560	127014560	C	T	SNP	ZNF800	ENST00000265827	human	ensembl	74_37	-1	known	missense	c.830	p.R277H	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF800	HGNC	ENSG00000048405				227	0	0	129	59	31.383
FSCN3	0	genome.wustl.edu	37	7	127236057	127236057	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	7	127236057	127236057	G	A	SNP	FSCN3	ENST00000265825	human	ensembl	74_37	+1	known	missense	c.841	p.D281N	0.991	pfam_Fascin-domain,superfamily_Actin_cross-linking	pfam_Fascin-domain,superfamily_Actin_cross-linking	-	no_errors	FSCN3	HGNC	ENSG00000106328				62	0	0	38	26	40.625
FAM71F1	0	genome.wustl.edu	37	7	128356976	128356976	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	7	128356976	128356976	C	A	SNP	FAM71F1	ENST00000315184	human	ensembl	74_37	+1	known	missense	c.359	p.A120D	0.994	NULL	pfam_DUF3699	-	no_errors	FAM71F1	HGNC	ENSG00000135248				57	0	0	32	18	36
AHCYL2	0	genome.wustl.edu	37	7	129062714	129062714	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	7	129062714	129062714	C	T	SNP	AHCYL2	ENST00000325006	human	ensembl	74_37	+1	known	nonsense	c.1495	p.R499*	1.000	pfam_Adenosylhomocysteinase,pfam_Ado_hCys_hydrolase_NAD-bd,tigrfam_Adenosylhomocysteinase	pfam_Adenosylhomocysteinase,pfam_Ado_hCys_hydrolase_NAD-bd,pfam_D-isomer_2_OHA_DH_NAD-bd,tigrfam_Adenosylhomocysteinase	-	no_errors	AHCYL2	HGNC	ENSG00000158467				96	0	0	94	16	14.5455
CPA4	0	genome.wustl.edu	37	7	129946724	129946724	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	7	129946724	129946724	A	G	SNP	CPA4	ENST00000222482	human	ensembl	74_37	+1	known	missense	c.689	p.Y230C	1.000	pfam_Peptidase_M14,smart_Peptidase_M14	pfam_Peptidase_M14,pfam_Prot_inh_M14A,superfamily_Prot_inh_propept,smart_Peptidase_M14,prints_Peptidase_M14	-	no_errors	CPA4	HGNC	ENSG00000128510				66	0	0	65	5	7.14286
CPA1	0	genome.wustl.edu	37	7	130021652	130021652	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	7	130021652	130021652	G	A	SNP	CPA1	ENST00000011292	human	ensembl	74_37	+1	known	missense	c.329	p.R110Q	0.000	superfamily_Prot_inh_propept	pfam_Peptidase_M14,pfam_Prot_inh_M14A,superfamily_Prot_inh_propept,smart_Peptidase_M14,prints_Peptidase_M14	-	no_errors	CPA1	HGNC	ENSG00000091704				61	0	0	44	17	27.8689
CPA1	0	genome.wustl.edu	37	7	130025028	130025028	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	7	130025028	130025028	G	A	SNP	CPA1	ENST00000011292	human	ensembl	74_37	+1	known	missense	c.829	p.G277S	1.000	pfam_Peptidase_M14,smart_Peptidase_M14	pfam_Peptidase_M14,pfam_Prot_inh_M14A,superfamily_Prot_inh_propept,smart_Peptidase_M14,prints_Peptidase_M14	-	no_errors	CPA1	HGNC	ENSG00000091704				101	0	0	85	19	18.2692
MKLN1	0	genome.wustl.edu	37	7	131172554	131172554	+	RNA	SNP	C	C	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	7	131172554	131172554	C	A	SNP	MKLN1	ENST00000498778	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.003	-	-	-	no_errors	MKLN1	HGNC	ENSG00000128585				40	0	0	16	19	54.2857
PLXNA4	0	genome.wustl.edu	37	7	132174136	132174136	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	7	132174136	132174136	C	A	SNP	PLXNA4	ENST00000321063	human	ensembl	74_37	-1	known	missense	c.1286	p.R429M	0.997	pfam_Semap_dom,superfamily_Semap_dom,smart_Semap_dom,pfscan_Semap_dom	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_Semap_dom,pfam_IPT,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_IPT,pfscan_Semap_dom	-	no_errors	PLXNA4	HGNC	ENSG00000221866				100	0	0	58	11	15.942
WDR91	0	genome.wustl.edu	37	7	134891882	134891882	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	7	134891882	134891882	A	G	SNP	WDR91	ENST00000354475	human	ensembl	74_37	-1	known	missense	c.584	p.L195P	1.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR91	HGNC	ENSG00000105875				151	0	0	108	14	11.4754
STRA8	0	genome.wustl.edu	37	7	134925394	134925394	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	7	134925394	134925394	C	T	SNP	STRA8	ENST00000275764	human	ensembl	74_37	+1	known	nonsense	c.184	p.R62*	0.912	superfamily_bHLH_dom	superfamily_bHLH_dom	-	no_errors	STRA8	HGNC	ENSG00000146857				168	0	0	143	29	16.8605
NUP205	0	genome.wustl.edu	37	7	135272360	135272360	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	7	135272360	135272360	G	A	SNP	NUP205	ENST00000285968	human	ensembl	74_37	+1	known	missense	c.1256	p.R419Q	1.000	pfam_Nup186/Nup192/Nup205	pfam_Nup186/Nup192/Nup205	-	no_errors	NUP205	HGNC	ENSG00000155561				90	0	0	66	9	12
ADCK2	0	genome.wustl.edu	37	7	140386947	140386947	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	7	140386947	140386947	G	A	SNP	ADCK2	ENST00000072869	human	ensembl	74_37	+1	known	missense	c.1463	p.R488Q	1.000	NULL	pfam_UbiB_dom,superfamily_Kinase-like_dom	-	no_errors	ADCK2	HGNC	ENSG00000133597				38	0	0	30	2	6.25
KEL	0	genome.wustl.edu	37	7	142638384	142638384	+	Silent	SNP	T	T	C			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	7	142638384	142638384	T	C	SNP	KEL	ENST00000355265	human	ensembl	74_37	-1	known	silent	c.2154	p.A718	0.014	pfam_Peptidase_M13_C	pfam_Peptidase_M13_N,pfam_Peptidase_M13_C,prints_Peptidase_M13_C	-	no_errors	KEL	HGNC	ENSG00000197993				123	0	0	92	43	31.8519
KEL	0	genome.wustl.edu	37	7	142643397	142643397	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	7	142643397	142643397	C	T	SNP	KEL	ENST00000355265	human	ensembl	74_37	-1	known	missense	c.1211	p.R404H	0.000	pfam_Peptidase_M13_N	pfam_Peptidase_M13_N,pfam_Peptidase_M13_C,prints_Peptidase_M13_C	-	no_errors	KEL	HGNC	ENSG00000197993				21	0	0	25	5	16.6667
CHPF2	0	genome.wustl.edu	37	7	150935717	150935717	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	7	150935717	150935717	G	A	SNP	CHPF2	ENST00000035307	human	ensembl	74_37	+1	known	missense	c.2269	p.A757T	0.762	pfam_Chond_GalNAc	pfam_Chond_GalNAc,pfam_Fringe-like	-	no_errors	CHPF2	HGNC	ENSG00000033100				30	0	0	27	10	27.027
PRKAG2	0	genome.wustl.edu	37	7	151372719	151372719	+	Silent	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	7	151372719	151372719	G	A	SNP	PRKAG2	ENST00000287878	human	ensembl	74_37	-1	known	silent	c.471	p.S157	0.912	NULL	pfam_CBS_dom,smart_CBS_dom	-	no_errors	PRKAG2	HGNC	ENSG00000106617				153	0	0	124	29	18.9542
INTS1	0	genome.wustl.edu	37	7	1535894	1535894	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	7	1535894	1535894	A	T	SNP	INTS1	ENST00000389470	human	ensembl	74_37	-1	known	missense	c.1993	p.F665I	1.000	NULL	pfam_DUF3677,superfamily_ARM-type_fold	-	no_errors	INTS1	HGNC	ENSG00000164880				96	0	0	65	6	8.4507
PTPRN2	0	genome.wustl.edu	37	7	157959937	157959937	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	7	157959937	157959937	G	A	SNP	PTPRN2	ENST00000404321	human	ensembl	74_37	-1	known	missense	c.665	p.T222M	0.007	NULL	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Receptor_IA-2,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRN2	HGNC	ENSG00000155093				96	0	0	92	15	14.0187
AHR	0	genome.wustl.edu	37	7	17379837	17379837	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	7	17379837	17379837	G	T	SNP	AHR	ENST00000242057	human	ensembl	74_37	+1	known	missense	c.2388	p.Q796H	0.005	NULL	pfam_PAS_fold_3,pfam_PAS_fold,pfam_bHLH_dom,superfamily_PAS,superfamily_bHLH_dom,smart_bHLH_dom,smart_PAS,smart_PAC,pfscan_PAS,pfscan_bHLH_dom	-	no_errors	AHR	HGNC	ENSG00000106546				113	0	0	65	35	35
FERD3L	0	genome.wustl.edu	37	7	19184632	19184632	+	Silent	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	7	19184632	19184632	G	A	SNP	FERD3L	ENST00000275461	human	ensembl	74_37	-1	known	silent	c.354	p.N118	1.000	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	FERD3L	HGNC	ENSG00000146618				62	0	0	65	12	15.5844
EIF3B	0	genome.wustl.edu	37	7	2414230	2414230	+	Silent	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	7	2414230	2414230	G	A	SNP	EIF3B	ENST00000360876	human	ensembl	74_37	+1	known	silent	c.1878	p.A626	0.508	pfam_TIF_beta_prop-like,pirsf_EIF3B	pfam_TIF_beta_prop-like,pfam_RRM_dom,smart_RRM_dom,pirsf_EIF3B,pfscan_RRM_dom	-	no_errors	EIF3B	HGNC	ENSG00000106263				217	1	0.458716	175	37	17.4528
CHST12	0	genome.wustl.edu	37	7	2473129	2473129	+	Silent	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	7	2473129	2473129	C	T	SNP	CHST12	ENST00000258711	human	ensembl	74_37	+1	known	silent	c.855	p.P285	0.999	pfam_Sulfotransferase,superfamily_P-loop_NTPase	pfam_Sulfotransferase,superfamily_P-loop_NTPase	-	no_errors	CHST12	HGNC	ENSG00000136213				162	0	0	134	26	16.25
GNA12	0	genome.wustl.edu	37	7	2854018	2854018	+	Silent	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	7	2854018	2854018	C	T	SNP	GNA12	ENST00000407904	human	ensembl	74_37	-1	putative	silent	c.60	p.S20	0.000	NULL	pfam_Gprotein_alpha_su,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,superfamily_GproteinA_insert,smart_Gprotein_alpha_su,prints_Gprotein_alpha_su,prints_Gprotein_alpha_12	-	no_errors	GNA12	HGNC	ENSG00000146535				79	0	0	77	15	16.3043
CARD11	0	genome.wustl.edu	37	7	2962768	2962768	+	Silent	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	7	2962768	2962768	G	A	SNP	CARD11	ENST00000396946	human	ensembl	74_37	-1	known	silent	c.2140	p.L714	0.996	superfamily_PDZ	pfam_CARD,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,superfamily_PDZ,pfscan_CARD	-	no_errors	CARD11	HGNC	ENSG00000198286				85	0	0	62	23	27.0588
PLEKHA8	0	genome.wustl.edu	37	7	30113715	30113715	+	Silent	SNP	A	A	G			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	7	30113715	30113715	A	G	SNP	PLEKHA8	ENST00000449726	human	ensembl	74_37	+1	known	silent	c.1329	p.Q443	0.995	pfam_Glycolipid_transfer_prot_dom,superfamily_Glycolipid_transfer_prot_dom	pfam_Glycolipid_transfer_prot_dom,pfam_Pleckstrin_homology,superfamily_Glycolipid_transfer_prot_dom,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	PLEKHA8	HGNC	ENSG00000106086				88	0	0	63	5	7.35294
NOD1	0	genome.wustl.edu	37	7	30491514	30491514	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	7	30491514	30491514	C	T	SNP	NOD1	ENST00000222823	human	ensembl	74_37	-1	known	missense	c.1519	p.G507R	0.000	pfscan_NACHT_NTPase	pfam_CARD,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_CARD	-	no_errors	NOD1	HGNC	ENSG00000106100				105	0	0	89	19	17.5926
ANLN	0	genome.wustl.edu	37	7	36489380	36489380	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	7	36489380	36489380	G	A	SNP	ANLN	ENST00000265748	human	ensembl	74_37	+1	known	missense	c.3185	p.R1062Q	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	ANLN	HGNC	ENSG00000011426				122	0	0	58	37	38.9474
AOAH	0	genome.wustl.edu	37	7	36677512	36677512	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	7	36677512	36677512	G	A	SNP	AOAH	ENST00000258749	human	ensembl	74_37	-1	known	missense	c.395	p.T132I	0.030	NULL	pfam_Lipase_GDSL,pfam_SapB_2,superfamily_Saposin-like,smart_SaposinB,pfscan_SaposinB	-	no_errors	AOAH	HGNC	ENSG00000136250				70	0	0	41	11	21.1538
INHBA	0	genome.wustl.edu	37	7	41729462	41729462	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	7	41729462	41729462	C	T	SNP	INHBA	ENST00000242208	human	ensembl	74_37	-1	known	missense	c.1067	p.S356N	1.000	pfam_TGF-b_C,smart_TGF-b_C	pfam_TGF-b_C,pfam_TGF-b_N,smart_TGF-b_C,prints_Inhibin_betaA,prints_Inhibin_asu	-	no_errors	INHBA	HGNC	ENSG00000122641				116	0	0	84	59	41.2587
MRPS24	0	genome.wustl.edu	37	7	43906548	43906548	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	7	43906548	43906548	C	T	SNP	MRPS24	ENST00000317534	human	ensembl	74_37	-1	known	missense	c.254	p.R85Q	0.998	NULL	NULL	-	no_errors	MRPS24	HGNC	ENSG00000062582				134	0	0	77	18	18.9474
AEBP1	0	genome.wustl.edu	37	7	44152488	44152488	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	7	44152488	44152488	A	G	SNP	AEBP1	ENST00000223357	human	ensembl	74_37	+1	known	missense	c.2549	p.K850R	0.997	pfam_Peptidase_M14,smart_Peptidase_M14	pfam_Peptidase_M14,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,superfamily_CarboxyPept-like_regulatory,smart_Coagulation_fac_5/8-C_type_dom,smart_Peptidase_M14,pfscan_Coagulation_fac_5/8-C_type_dom,prints_Peptidase_M14	-	no_errors	AEBP1	HGNC	ENSG00000106624				205	0	0	155	32	17.1123
RADIL	0	genome.wustl.edu	37	7	4917262	4917262	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	7	4917262	4917262	G	A	SNP	RADIL	ENST00000399583	human	ensembl	74_37	-1	known	missense	c.509	p.A170V	1.000	NULL	pfam_Dil_domain,pfam_Ras-assoc,pfam_PDZ,superfamily_PDZ,superfamily_SMAD_FHA_domain,smart_Ras-assoc,smart_PDZ,pfscan_Dilute,pfscan_PDZ,pfscan_Ras-assoc	-	no_errors	RADIL	HGNC	ENSG00000157927				145	0	0	116	22	15.942
VWC2	0	genome.wustl.edu	37	7	49815437	49815437	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	7	49815437	49815437	G	A	SNP	VWC2	ENST00000340652	human	ensembl	74_37	+1	known	missense	c.406	p.A136T	0.000	NULL	pfam_VWF_C,smart_VWF_C,pfscan_VWF_C	-	no_errors	VWC2	HGNC	ENSG00000188730				8	0	0	1	2	66.6667
ZPBP	0	genome.wustl.edu	37	7	50022992	50022992	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	7	50022992	50022992	A	C	SNP	ZPBP	ENST00000046087	human	ensembl	74_37	-1	known	missense	c.907	p.F303V	1.000	pfam_Sp38-bd	pfam_Sp38-bd,pfscan_Ig-like_dom	-	no_errors	ZPBP	HGNC	ENSG00000042813				100	0	0	36	24	40
FIGNL1	0	genome.wustl.edu	37	7	50514362	50514362	+	Silent	SNP	A	A	G			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	7	50514362	50514362	A	G	SNP	FIGNL1	ENST00000356889	human	ensembl	74_37	-1	known	silent	c.624	p.G208	0.443	NULL	pfam_ATPase_AAA_core,pfam_Vps4_C,pfam_DNA_helicase_Holl-junc_RuvB_N,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	FIGNL1	HGNC	ENSG00000132436				250	0	0	141	86	37.8855
POM121L12	0	genome.wustl.edu	37	7	53104115	53104115	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	7	53104115	53104115	G	A	SNP	POM121L12	ENST00000408890	human	ensembl	74_37	+1	known	missense	c.751	p.A251T	0.000	NULL	NULL	-	no_errors	POM121L12	HGNC	ENSG00000221900				116	0	0	90	38	29.6875
SLC29A4	0	genome.wustl.edu	37	7	5338627	5338627	+	Silent	SNP	A	A	G			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	7	5338627	5338627	A	G	SNP	SLC29A4	ENST00000297195	human	ensembl	74_37	+1	known	silent	c.891	p.P297	0.072	pfam_Eqnu_transpt,superfamily_MFS_dom_general_subst_transpt	pfam_Eqnu_transpt,superfamily_MFS_dom_general_subst_transpt,prints_Eqnu_transpt	-	no_errors	SLC29A4	HGNC	ENSG00000164638				63	0	0	48	24	33.3333
ZNF716	0	genome.wustl.edu	37	7	57528978	57528978	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	7	57528978	57528978	T	C	SNP	ZNF716	ENST00000420713	human	ensembl	74_37	+1	known	missense	c.811	p.C271R	0.841	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF716	HGNC	ENSG00000182111				64	0	0	31	14	31.1111
CYTH3	0	genome.wustl.edu	37	7	6205435	6205435	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	7	6205435	6205435	C	T	SNP	CYTH3	ENST00000350796	human	ensembl	74_37	-1	known	missense	c.830	p.R277H	0.704	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_Sec7_dom,pfam_Pleckstrin_homology,superfamily_Sec7_dom,smart_Sec7_dom,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Sec7_dom	-	no_errors	CYTH3	HGNC	ENSG00000008256				78	0	0	59	12	16.9014
POM121	0	genome.wustl.edu	37	7	72412589	72412589	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	7	72412589	72412589	C	T	SNP	POM121	ENST00000434423	human	ensembl	74_37	+1	known	missense	c.2057	p.T686M	0.000	NULL	NULL	-	no_errors	POM121	HGNC	ENSG00000196313				131	0	0	83	33	28.4483
BAZ1B	0	genome.wustl.edu	37	7	72857062	72857062	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	7	72857062	72857062	G	A	SNP	BAZ1B	ENST00000339594	human	ensembl	74_37	-1	known	missense	c.4087	p.P1363S	1.000	pfam_Bromodomain,superfamily_Bromodomain,smart_Bromodomain,pfscan_Bromodomain,prints_Bromodomain	pfam_WSTF_Acf1_Cbp146,pfam_Bromodomain,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,superfamily_ARM-type_fold,smart_DDT_dom_subgr,smart_Znf_PHD,smart_Bromodomain,pfscan_WSTF_Acf1_Cbp146,pfscan_Znf_PHD-finger,pfscan_Znf_RING,pfscan_DDT_dom_superfamily,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BAZ1B	HGNC	ENSG00000009954				98	0	0	57	22	27.8481
PCLO	0	genome.wustl.edu	37	7	82764703	82764703	+	Silent	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	7	82764703	82764703	C	T	SNP	PCLO	ENST00000333891	human	ensembl	74_37	-1	known	silent	c.2163	p.K721	1.000	NULL	pfam_Znf_piccolo,pfam_C2_dom,pfam_PDZ,superfamily_C2_dom,superfamily_PDZ,superfamily_Znf_FYVE_PHD,smart_PDZ,smart_C2_dom,pfscan_C2_dom,pfscan_PDZ	-	no_errors	PCLO	HGNC	ENSG00000186472				100	0	0	39	30	43.4783
ABCB4	0	genome.wustl.edu	37	7	87038559	87038559	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	7	87038559	87038559	A	G	SNP	ABCB4	ENST00000265723	human	ensembl	74_37	-1	known	missense	c.3074	p.L1025P	0.994	NULL	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,pfam_ABC_ATPase_put,pfam_Zeta_toxin_domain,superfamily_P-loop_NTPase,superfamily_ABC1_TM_dom,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom	-	no_errors	ABCB4	HGNC	ENSG00000005471				119	0	0	71	19	21.1111
PEX1	0	genome.wustl.edu	37	7	92129019	92129019	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	7	92129019	92129019	T	C	SNP	PEX1	ENST00000248633	human	ensembl	74_37	-1	known	missense	c.2717	p.K906R	1.000	pfam_ATPase_AAA_core,pfam_DNA_helicase_Holl-junc_RuvB_N,superfamily_P-loop_NTPase,smart_AAA+_ATPase	pfam_ATPase_AAA_core,pfam_Peroxisome_synth_fac_1_a/b,pfam_PEX-1N,pfam_DNA_helicase_Holl-junc_RuvB_N,superfamily_P-loop_NTPase,superfamily_Asp_de-COase-like_dom,smart_AAA+_ATPase	-	no_errors	PEX1	HGNC	ENSG00000127980				184	0	0	140	20	12.5
CDK6	0	genome.wustl.edu	37	7	92355017	92355017	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	7	92355017	92355017	T	A	SNP	CDK6	ENST00000265734	human	ensembl	74_37	-1	known	missense	c.460	p.T154S	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	CDK6	HGNC	ENSG00000105810				213	0	0	163	19	10.4396
SAMD9	0	genome.wustl.edu	37	7	92732375	92732375	+	Silent	SNP	T	T	C			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	7	92732375	92732375	T	C	SNP	SAMD9	ENST00000379958	human	ensembl	74_37	-1	known	silent	c.3036	p.L1012	0.093	NULL	pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,superfamily_P-loop_NTPase,smart_SAM,pfscan_SAM	-	no_errors	SAMD9	HGNC	ENSG00000205413				137	0	0	110	15	12
LMTK2	0	genome.wustl.edu	37	7	97822305	97822305	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	7	97822305	97822305	C	T	SNP	LMTK2	ENST00000297293	human	ensembl	74_37	+1	known	missense	c.2528	p.T843M	0.000	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	LMTK2	HGNC	ENSG00000164715				176	0	0	123	47	27.6471
BAIAP2L1	0	genome.wustl.edu	37	7	97946560	97946560	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	7	97946560	97946560	C	T	SNP	BAIAP2L1	ENST00000005260	human	ensembl	74_37	-1	known	missense	c.457	p.A153T	0.995	pfam_IRSp53/MIM_homology_IMD	pfam_IRSp53/MIM_homology_IMD,pfam_SH3_2,pfam_SH3_domain,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	BAIAP2L1	HGNC	ENSG00000006453				350	1	0.2849	268	53	16.5109
ARPC1A	0	genome.wustl.edu	37	7	98957328	98957328	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	7	98957328	98957328	C	T	SNP	ARPC1A	ENST00000262942	human	ensembl	74_37	+1	known	missense	c.950	p.T317M	0.999	superfamily_WD40_repeat_dom,smart_WD40_repeat,pirsf_ARPC2/3_su1	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pirsf_ARPC2/3_su1,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	ARPC1A	HGNC	ENSG00000241685				85	0	0	55	17	23.6111
CYP3A43	0	genome.wustl.edu	37	7	99461224	99461224	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	7	99461224	99461224	C	T	SNP	CYP3A43	ENST00000222382	human	ensembl	74_37	+1	known	nonsense	c.1321	p.R441*	1.000	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_CYP3A,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-II,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450	-	no_errors	CYP3A43	HGNC	ENSG00000021461				134	0	0	114	15	11.6279
MCM7	0	genome.wustl.edu	37	7	99693747	99693747	+	Silent	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	7	99693747	99693747	C	T	SNP	MCM7	ENST00000303887	human	ensembl	74_37	-1	known	silent	c.1245	p.T415	0.032	pfam_MCM_DNA-dep_ATPase,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_MCM_DNA-dep_ATPase,smart_AAA+_ATPase,pfscan_MCM_DNA-dep_ATPase	pfam_MCM_DNA-dep_ATPase,pfam_Mg_chelatse_chII,pfam_ATPase_dyneun-rel_AAA,superfamily_NA-bd_OB-fold,superfamily_P-loop_NTPase,smart_MCM_DNA-dep_ATPase,smart_AAA+_ATPase,pfscan_MCM_DNA-dep_ATPase,prints_MCM_DNA-dep_ATPase,prints_MCM7,prints_MCM_4	-	no_errors	MCM7	HGNC	ENSG00000166508				52	0	0	37	15	28.8462
SPDYE3	0	genome.wustl.edu	37	7	99914757	99914757	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	7	99914757	99914757	G	A	SNP	SPDYE3	ENST00000332397	human	ensembl	74_37	+1	known	missense	c.1325	p.R442H	0.015	pfam_Cell_cycle_regulatory_Spy1	pfam_Cell_cycle_regulatory_Spy1	-	no_errors	SPDYE3	HGNC	ENSG00000214300				251	0	0	228	43	15.8672
GRHL2	0	genome.wustl.edu	37	8	102589722	102589722	+	Silent	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	8	102589722	102589722	G	A	SNP	GRHL2	ENST00000251808	human	ensembl	74_37	+1	known	silent	c.978	p.T326	0.948	pfam_CP2	pfam_CP2	-	no_errors	GRHL2	HGNC	ENSG00000083307				62	0	0	64	4	5.88235
RIMS2	0	genome.wustl.edu	37	8	105001565	105001565	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	8	105001565	105001565	G	A	SNP	RIMS2	ENST00000406091	human	ensembl	74_37	+1	known	missense	c.2960	p.R987H	0.981	NULL	pfam_C2_dom,pfam_PDZ,superfamily_C2_dom,superfamily_Znf_FYVE_PHD,superfamily_PDZ,smart_PDZ,smart_C2_dom,pfscan_C2_dom,pfscan_PDZ,pfscan_Znf_FYVE-typ,pfscan_Znf_FYVE-rel	-	no_errors	RIMS2	HGNC	ENSG00000176406				235	0	0	137	38	21.7143
DCSTAMP	0	genome.wustl.edu	37	8	105361024	105361024	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	8	105361024	105361024	A	T	SNP	DCSTAMP	ENST00000297581	human	ensembl	74_37	+1	known	missense	c.244	p.I82F	0.000	NULL	pfam_DC_STAMP-like,superfamily_ABC1_TM_dom	-	no_errors	DCSTAMP	HGNC	ENSG00000164935				127	0	0	109	28	20.438
LRP12	0	genome.wustl.edu	37	8	105509656	105509656	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	8	105509656	105509656	C	A	SNP	LRP12	ENST00000424843	human	ensembl	74_37	-1	known	missense	c.1067	p.C356F	1.000	superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,pfscan_LDrepeatLR_classA_rpt	pfam_CUB_dom,pfam_LDrepeatLR_classA_rpt,superfamily_CUB_dom,superfamily_LDrepeatLR_classA_rpt,smart_CUB_dom,smart_LDrepeatLR_classA_rpt,pfscan_CUB_dom,pfscan_LDrepeatLR_classA_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP12	HGNC	ENSG00000147650				212	1	0.469484	127	31	19.6203
LRP12	0	genome.wustl.edu	37	8	105509809	105509809	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	8	105509809	105509809	T	A	SNP	LRP12	ENST00000424843	human	ensembl	74_37	-1	known	missense	c.914	p.N305I	1.000	pfam_CUB_dom,superfamily_CUB_dom,smart_CUB_dom,pfscan_CUB_dom	pfam_CUB_dom,pfam_LDrepeatLR_classA_rpt,superfamily_CUB_dom,superfamily_LDrepeatLR_classA_rpt,smart_CUB_dom,smart_LDrepeatLR_classA_rpt,pfscan_CUB_dom,pfscan_LDrepeatLR_classA_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP12	HGNC	ENSG00000147650				99	0	0	81	17	17.3469
ZFPM2	0	genome.wustl.edu	37	8	106815407	106815407	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	8	106815407	106815407	C	T	SNP	ZFPM2	ENST00000407775	human	ensembl	74_37	+1	known	missense	c.3097	p.P1033S	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZFPM2	HGNC	ENSG00000169946				49	0	0	47	8	14.5455
TRPS1	0	genome.wustl.edu	37	8	116599521	116599521	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	8	116599521	116599521	G	A	SNP	TRPS1	ENST00000395715	human	ensembl	74_37	-1	known	missense	c.2407	p.R803C	0.999	NULL	pfam_Znf_GATA,smart_Znf_C2H2-like,smart_Znf_GATA,pfscan_Znf_C2H2,pfscan_Znf_GATA,prints_Znf_GATA	-	no_errors	TRPS1	HGNC	ENSG00000104447				642	1	0.155521	528	107	16.8504
COL14A1	0	genome.wustl.edu	37	8	121354657	121354657	+	Silent	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	8	121354657	121354657	G	A	SNP	COL14A1	ENST00000297848	human	ensembl	74_37	+1	known	silent	c.4860	p.A1620	0.391	NULL	pfam_VWF_A,pfam_Fibronectin_type3,pfam_Collagen,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_VWF_A,smart_Laminin_G,pfscan_Fibronectin_type3,pfscan_VWF_A	-	no_errors	COL14A1	HGNC	ENSG00000187955				97	0	0	92	20	17.8571
MTBP	0	genome.wustl.edu	37	8	121466147	121466147	+	Splice_Site	SNP	T	T	C			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	8	121466147	121466147	T	C	SNP	MTBP	ENST00000305949	human	ensembl	74_37	+1	known	splice_site	c.484+2	e5+2	1.000	-	-	-	no_errors	MTBP	HGNC	ENSG00000172167				99	0	0	44	9	16.9811
FAM91A1	0	genome.wustl.edu	37	8	124799557	124799557	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	8	124799557	124799557	G	A	SNP	FAM91A1	ENST00000334705	human	ensembl	74_37	+1	known	missense	c.1135	p.A379T	1.000	NULL	NULL	-	no_errors	FAM91A1	HGNC	ENSG00000176853				112	0	0	81	20	19.802
MTSS1	0	genome.wustl.edu	37	8	125740157	125740157	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	8	125740157	125740157	C	A	SNP	MTSS1	ENST00000518547	human	ensembl	74_37	-1	known	missense	c.40	p.G14C	1.000	NULL	pfam_IRSp53/MIM_homology_IMD,pfscan_WH2_dom	-	no_errors	MTSS1	HGNC	ENSG00000170873				49	0	0	44	5	10.2041
ASAP1	0	genome.wustl.edu	37	8	131072914	131072914	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	8	131072914	131072914	C	T	SNP	ASAP1	ENST00000357668	human	ensembl	74_37	-1	known	missense	c.3103	p.A1035T	0.002	NULL	pfam_ArfGAP,pfam_SH3_domain,pfam_Pleckstrin_homology,pfam_SH3_2,superfamily_Ankyrin_rpt-contain_dom,superfamily_SH3_domain,smart_Pleckstrin_homology,smart_ArfGAP,smart_Ankyrin_rpt,smart_SH3_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_ArfGAP,prints_ArfGAP,prints_p67phox	-	no_errors	ASAP1	HGNC	ENSG00000153317				319	1	0.3125	300	54	15.2542
ASAP1	0	genome.wustl.edu	37	8	131370319	131370319	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	8	131370319	131370319	A	G	SNP	ASAP1	ENST00000357668	human	ensembl	74_37	-1	known	missense	c.130	p.S44P	1.000	NULL	pfam_ArfGAP,pfam_SH3_domain,pfam_Pleckstrin_homology,pfam_SH3_2,superfamily_Ankyrin_rpt-contain_dom,superfamily_SH3_domain,smart_Pleckstrin_homology,smart_ArfGAP,smart_Ankyrin_rpt,smart_SH3_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_ArfGAP,prints_ArfGAP,prints_p67phox	-	no_errors	ASAP1	HGNC	ENSG00000153317				36	0	0	37	12	24.4898
KCNQ3	0	genome.wustl.edu	37	8	133144483	133144483	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	8	133144483	133144483	T	C	SNP	KCNQ3	ENST00000388996	human	ensembl	74_37	-1	known	missense	c.1828	p.T610A	0.998	pfam_K_chnl_volt-dep_KCNQ_C	pfam_K_chnl_volt-dep_KCNQ_C,pfam_Ankyrin-G_BS,pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom,prints_K_chnl_volt-dep_KCNQ3,prints_K_chnl_volt-dep_KCNQ,prints_K_chnl	-	no_errors	KCNQ3	HGNC	ENSG00000184156				76	0	0	68	13	16.0494
FAM135B	0	genome.wustl.edu	37	8	139189644	139189644	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	8	139189644	139189644	G	A	SNP	FAM135B	ENST00000395297	human	ensembl	74_37	-1	known	missense	c.1049	p.A350V	1.000	pfam_DUF3657	pfam_DUF676_lipase-like,pfam_DUF3657,pfam_PGAP1-like	-	no_errors	FAM135B	HGNC	ENSG00000147724				36	0	0	23	4	14.8148
COL22A1	0	genome.wustl.edu	37	8	139712355	139712355	+	Silent	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	8	139712355	139712355	G	A	SNP	COL22A1	ENST00000303045	human	ensembl	74_37	-1	known	silent	c.2592	p.P864	0.005	NULL	pfam_Collagen,pfam_VWF_A,superfamily_ConA-like_lec_gl_sf,smart_VWF_A,smart_Laminin_G,pfscan_VWF_A	-	no_errors	COL22A1	HGNC	ENSG00000169436				50	0	0	34	6	15
AGO2	0	genome.wustl.edu	37	8	141570576	141570576	+	Silent	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	8	141570576	141570576	C	T	SNP	AGO2	ENST00000220592	human	ensembl	74_37	-1	known	silent	c.552	p.A184	0.002	pfam_DUF1785,superfamily_PAZ_dom	pfam_Piwi,pfam_PAZ_dom,pfam_DUF1785,superfamily_RNaseH-like_dom,superfamily_PAZ_dom,smart_PAZ_dom,smart_Piwi,pfscan_PAZ_dom,pfscan_Piwi	-	no_errors	AGO2	HGNC	ENSG00000123908				118	0	0	75	19	20.2128
PTP4A3	0	genome.wustl.edu	37	8	142441117	142441117	+	Silent	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	8	142441117	142441117	G	A	SNP	PTP4A3	ENST00000329397	human	ensembl	74_37	+1	known	silent	c.495	p.T165	0.000	NULL	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Dual-sp_phosphatase_cat-dom,smart_Tyr_Pase_cat,pfscan_Tyr/Dual-sp_Pase	-	no_errors	PTP4A3	HGNC	ENSG00000184489				113	0	0	107	26	19.5489
JRK	0	genome.wustl.edu	37	8	143747298	143747298	+	RNA	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	8	143747298	143747298	C	T	SNP	JRK	ENST00000422119	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.930	-	-	-	no_errors	JRK	HGNC	ENSG00000234616				21	0	0	27	7	20.5882
SLURP1	0	genome.wustl.edu	37	8	143823232	143823232	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	8	143823232	143823232	G	A	SNP	SLURP1	ENST00000246515	human	ensembl	74_37	-1	known	missense	c.167	p.T56M	0.000	pfam_LY6_UPAR	pfam_LY6_UPAR	-	no_errors	SLURP1	HGNC	ENSG00000126233				88	0	0	52	10	16.129
RHPN1	0	genome.wustl.edu	37	8	144457822	144457822	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	8	144457822	144457822	G	A	SNP	RHPN1	ENST00000289013	human	ensembl	74_37	+1	known	missense	c.160	p.A54T	0.991	pfam_HR1_rho-bd,superfamily_HR1_rho-bd,smart_HR1_rho-bd	pfam_BRO1_dom,pfam_HR1_rho-bd,pfam_PDZ,superfamily_PDZ,superfamily_HR1_rho-bd,smart_HR1_rho-bd,smart_PDZ,pfscan_BRO1_dom,pfscan_PDZ	-	no_errors	RHPN1	HGNC	ENSG00000158106				39	0	0	27	6	18.1818
ZC3H3	0	genome.wustl.edu	37	8	144620861	144620861	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	8	144620861	144620861	C	T	SNP	ZC3H3	ENST00000262577	human	ensembl	74_37	-1	known	missense	c.676	p.V226I	0.000	NULL	pfam_Znf_CCCH,smart_Znf_CCCH	-	no_errors	ZC3H3	HGNC	ENSG00000014164				50	0	0	48	14	22.5806
SCRIB	0	genome.wustl.edu	37	8	144874253	144874253	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	8	144874253	144874253	C	A	SNP	SCRIB	ENST00000320476	human	ensembl	74_37	-1	known	missense	c.4565	p.R1522M	1.000	NULL	pfam_PDZ,pfam_Leu-rich_rpt,superfamily_PDZ,smart_Leu-rich_rpt_typical-subtyp,smart_PDZ,pfscan_PDZ	-	no_errors	SCRIB	HGNC	ENSG00000180900				29	0	0	18	6	25
EPPK1	0	genome.wustl.edu	37	8	144944997	144944997	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	8	144944997	144944997	C	T	SNP	EPPK1	ENST00000525985	human	ensembl	74_37	-1	known	missense	c.2425	p.A809T	0.001	NULL	pfam_Plectin_repeat,smart_Plectin_repeat	-	no_errors	EPPK1	HGNC	ENSG00000227184				64	0	0	50	11	18.0328
EPPK1	0	genome.wustl.edu	37	8	144945237	144945237	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	8	144945237	144945237	C	T	SNP	EPPK1	ENST00000525985	human	ensembl	74_37	-1	known	missense	c.2185	p.V729I	0.933	pfam_Plectin_repeat,smart_Plectin_repeat	pfam_Plectin_repeat,smart_Plectin_repeat	-	no_errors	EPPK1	HGNC	ENSG00000227184				145	1	0.684932	143	24	14.3713
PARP10	0	genome.wustl.edu	37	8	145057230	145057230	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	8	145057230	145057230	G	A	SNP	PARP10	ENST00000313028	human	ensembl	74_37	-1	known	missense	c.2426	p.A809V	0.005	pfscan_Poly(ADP-ribose)pol_cat_dom	pfam_Poly(ADP-ribose)pol_cat_dom,pfscan_Poly(ADP-ribose)pol_cat_dom	-	no_errors	PARP10	HGNC	ENSG00000178685				104	1	0.952381	83	18	17.8218
CPSF1	0	genome.wustl.edu	37	8	145624413	145624413	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	8	145624413	145624413	C	T	SNP	CPSF1	ENST00000349769	human	ensembl	74_37	-1	known	missense	c.1483	p.E495K	1.000	NULL	pfam_Cleavage/polyA-sp_fac_asu_C	-	no_errors	CPSF1	HGNC	ENSG00000071894				27	0	0	24	5	17.2414
MYOM2	0	genome.wustl.edu	37	8	2044088	2044088	+	Silent	SNP	C	C	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	8	2044088	2044088	C	A	SNP	MYOM2	ENST00000262113	human	ensembl	74_37	+1	known	silent	c.2127	p.T709	0.000	superfamily_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	MYOM2	HGNC	ENSG00000036448				258	0	0	184	41	18.2222
GFRA2	0	genome.wustl.edu	37	8	21608373	21608373	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	8	21608373	21608373	C	T	SNP	GFRA2	ENST00000517328	human	ensembl	74_37	-1	known	missense	c.521	p.C174Y	1.000	pfam_GDNF/GAS1,smart_GDNF/GAS1,pirsf_Glial_neurotroph_fac_rcpt_a1/2	pfam_GDNF/GAS1,smart_GDNF/GAS1,pirsf_Glial_neurotroph_fac_rcpt_a1/2,prints_GDNF_rcpt,prints_GDNF_rcpt_a2	-	no_errors	GFRA2	HGNC	ENSG00000168546				94	0	0	79	11	12.2222
XPO7	0	genome.wustl.edu	37	8	21839264	21839264	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	8	21839264	21839264	A	G	SNP	XPO7	ENST00000434536	human	ensembl	74_37	+1	known	missense	c.1007	p.Y336C	1.000	superfamily_ARM-type_fold	pfam_Importin-beta_N,superfamily_ARM-type_fold,smart_Importin-beta_N,pfscan_Importin-beta_N	-	no_errors	XPO7	HGNC	ENSG00000130227				161	0	0	115	27	19.0141
BMP1	0	genome.wustl.edu	37	8	22051620	22051620	+	Silent	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	8	22051620	22051620	C	T	SNP	BMP1	ENST00000306385	human	ensembl	74_37	+1	known	silent	c.1230	p.S410	1.000	pirsf_BMP_1/tolloid-like,pfam_CUB_dom,superfamily_CUB_dom,smart_CUB_dom,pfscan_CUB_dom	pirsf_BMP_1/tolloid-like,pfam_CUB_dom,pfam_Peptidase_M12A,pfam_EGF-like_Ca-bd_dom,superfamily_CUB_dom,smart_Peptidase_Metallo,smart_CUB_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,prints_Peptidase_M12A,pfscan_CUB_dom,pfscan_EG-like_dom	-	no_errors	BMP1	HGNC	ENSG00000168487				166	0	0	126	36	22.2222
BMP1	0	genome.wustl.edu	37	8	22052262	22052262	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	8	22052262	22052262	A	G	SNP	BMP1	ENST00000306385	human	ensembl	74_37	+1	known	missense	c.1469	p.Y490C	1.000	pirsf_BMP_1/tolloid-like,pfam_CUB_dom,superfamily_CUB_dom,smart_CUB_dom,pfscan_CUB_dom	pirsf_BMP_1/tolloid-like,pfam_CUB_dom,pfam_Peptidase_M12A,pfam_EGF-like_Ca-bd_dom,superfamily_CUB_dom,smart_Peptidase_Metallo,smart_CUB_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,prints_Peptidase_M12A,pfscan_CUB_dom,pfscan_EG-like_dom	-	no_errors	BMP1	HGNC	ENSG00000168487				76	0	0	65	17	20.7317
SORBS3	0	genome.wustl.edu	37	8	22418897	22418897	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	8	22418897	22418897	G	A	SNP	SORBS3	ENST00000523402	human	ensembl	74_37	+1	putative	missense	c.528	p.M176I	0.002	pfscan_Sorb	pfam_Sorb,smart_Sorb,pfscan_Sorb	-	no_errors	SORBS3	HGNC	ENSG00000120896				73	0	0	68	9	11.6883
BIN3	0	genome.wustl.edu	37	8	22488003	22488003	+	Silent	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	8	22488003	22488003	C	T	SNP	BIN3	ENST00000276416	human	ensembl	74_37	-1	known	silent	c.249	p.T83	0.431	pfam_BAR_dom,pfam_Vps5_C,smart_BAR_dom,pfscan_BAR_dom	pfam_BAR_dom,pfam_Vps5_C,smart_BAR_dom,pfscan_BAR_dom	-	no_errors	BIN3	HGNC	ENSG00000147439				262	0	0	219	40	15.444
RHOBTB2	0	genome.wustl.edu	37	8	22862133	22862133	+	Silent	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	8	22862133	22862133	C	T	SNP	RHOBTB2	ENST00000251822	human	ensembl	74_37	+1	known	silent	c.186	p.C62	1.000	pfam_Small_GTPase,pfam_MIRO-like,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho	pfam_BTB_POZ,pfam_Small_GTPase,pfam_MIRO-like,superfamily_P-loop_NTPase,superfamily_BTB/POZ_fold,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_BTB/POZ-like,pfscan_BTB/POZ-like,prints_Small_GTPase	-	no_errors	RHOBTB2	HGNC	ENSG00000008853				40	0	0	26	7	21.2121
RHOBTB2	0	genome.wustl.edu	37	8	22865598	22865598	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	8	22865598	22865598	C	G	SNP	RHOBTB2	ENST00000251822	human	ensembl	74_37	+1	known	missense	c.1594	p.P532A	0.975	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like	pfam_BTB_POZ,pfam_Small_GTPase,pfam_MIRO-like,superfamily_P-loop_NTPase,superfamily_BTB/POZ_fold,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_BTB/POZ-like,pfscan_BTB/POZ-like,prints_Small_GTPase	-	no_errors	RHOBTB2	HGNC	ENSG00000008853				183	0	0	118	28	19.1781
LOXL2	0	genome.wustl.edu	37	8	23191025	23191025	+	Silent	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	8	23191025	23191025	G	A	SNP	LOXL2	ENST00000389131	human	ensembl	74_37	-1	known	silent	c.855	p.P285	0.978	pfam_SRCR,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_SRCR	pfam_Lysyl_oxidase,pfam_SRCR,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_SRCR,prints_Lysyl_oxidase,prints_SRCR	-	no_errors	LOXL2	HGNC	ENSG00000134013				201	0	0	148	27	15.4286
SLC25A37	0	genome.wustl.edu	37	8	23429231	23429231	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	8	23429231	23429231	G	A	SNP	SLC25A37	ENST00000519973	human	ensembl	74_37	+1	known	missense	c.880	p.G294S	1.000	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	-	no_errors	SLC25A37	HGNC	ENSG00000147454				49	0	0	36	5	12.1951
ADAM7	0	genome.wustl.edu	37	8	24321458	24321458	+	Silent	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	8	24321458	24321458	G	A	SNP	ADAM7	ENST00000175238	human	ensembl	74_37	+1	known	silent	c.297	p.R99	0.000	pfam_Peptidase_M12B_N	pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_ADAM_Cys-rich,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_Peptidase_M12B,prints_Blood-coag_inhib_Disintegrin	-	no_errors	ADAM7	HGNC	ENSG00000069206				124	0	0	90	19	17.4312
EBF2	0	genome.wustl.edu	37	8	25708244	25708244	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	8	25708244	25708244	C	T	SNP	EBF2	ENST00000520164	human	ensembl	74_37	-1	known	missense	c.1562	p.S521N	1.000	NULL	pfam_IPT,superfamily_Ig_E-set,smart_IPT	-	no_errors	EBF2	HGNC	ENSG00000221818				108	0	0	81	20	19.802
TRIM35	0	genome.wustl.edu	37	8	27145379	27145379	+	Silent	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	8	27145379	27145379	G	A	SNP	TRIM35	ENST00000305364	human	ensembl	74_37	-1	known	silent	c.1170	p.H390	0.745	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl_sf,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl_sf,smart_Znf_RING,smart_Znf_B-box,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	TRIM35	HGNC	ENSG00000104228				61	0	0	38	8	17.3913
SCARA3	0	genome.wustl.edu	37	8	27507225	27507225	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	8	27507225	27507225	C	T	SNP	SCARA3	ENST00000301904	human	ensembl	74_37	+1	known	missense	c.14	p.S5L	0.983	NULL	pfam_Collagen	-	no_errors	SCARA3	HGNC	ENSG00000168077				40	0	0	55	10	15.3846
SCARA3	0	genome.wustl.edu	37	8	27507232	27507232	+	Silent	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	8	27507232	27507232	C	T	SNP	SCARA3	ENST00000301904	human	ensembl	74_37	+1	known	silent	c.21	p.G7	0.309	NULL	pfam_Collagen	-	no_errors	SCARA3	HGNC	ENSG00000168077				55	0	0	58	12	17.1429
CSMD1	0	genome.wustl.edu	37	8	2796120	2796120	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	8	2796120	2796120	C	A	SNP	CSMD1	ENST00000520002	human	ensembl	74_37	-1	known	missense	c.10685	p.C3562F	1.000	NULL	pfam_CUB_dom,pfam_Sushi_SCR_CCP,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_CUB_dom,smart_Sushi_SCR_CCP,pfscan_CUB_dom,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD1	HGNC	ENSG00000183117				23	0	0	19	6	24
CSMD1	0	genome.wustl.edu	37	8	2857552	2857552	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	8	2857552	2857552	G	A	SNP	CSMD1	ENST00000520002	human	ensembl	74_37	-1	known	missense	c.8134	p.R2712W	1.000	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_CUB_dom,pfam_Sushi_SCR_CCP,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_CUB_dom,smart_Sushi_SCR_CCP,pfscan_CUB_dom,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD1	HGNC	ENSG00000183117				223	0	0	191	45	19.0678
MAK16	0	genome.wustl.edu	37	8	33354189	33354189	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	8	33354189	33354189	T	C	SNP	MAK16	ENST00000360128	human	ensembl	74_37	+1	known	missense	c.569	p.L190P	1.000	pfam_Mak16,pirsf_Mak16	pfam_Mak16,pirsf_Mak16	-	no_errors	MAK16	HGNC	ENSG00000198042				54	0	0	52	12	18.75
UNC5D	0	genome.wustl.edu	37	8	35624428	35624428	+	Silent	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	8	35624428	35624428	G	A	SNP	UNC5D	ENST00000404895	human	ensembl	74_37	+1	known	silent	c.2322	p.P774	0.009	NULL	pfam_ZU5,pfam_Ig_I-set,pfam_Thrombospondin_1_rpt,pfam_Death_domain,pfam_Immunoglobulin,superfamily_DEATH-like_dom,superfamily_Thrombospondin_1_rpt,smart_Ig_sub,smart_Ig_sub2,smart_Thrombospondin_1_rpt,smart_ZU5,smart_Death_domain,pfscan_Thrombospondin_1_rpt,pfscan_ZU5,pfscan_Ig-like_dom	-	no_errors	UNC5D	HGNC	ENSG00000156687				110	0	0	88	25	22.1239
ASH2L	0	genome.wustl.edu	37	8	37986420	37986420	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	8	37986420	37986420	C	A	SNP	ASH2L	ENST00000343823	human	ensembl	74_37	+1	known	missense	c.1478	p.P493H	1.000	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl_sf,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl_sf,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY	-	no_errors	ASH2L	HGNC	ENSG00000129691				624	1	0.16	469	109	18.8581
LSM1	0	genome.wustl.edu	37	8	38027335	38027335	+	Silent	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	8	38027335	38027335	G	A	SNP	LSM1	ENST00000311351	human	ensembl	74_37	-1	known	silent	c.216	p.V72	1.000	pfam_Ribonucl_LSM,superfamily_LSM_dom,smart_Ribonucl_LSM_euk/arc	pfam_Ribonucl_LSM,superfamily_LSM_dom,smart_Ribonucl_LSM_euk/arc	-	no_errors	LSM1	HGNC	ENSG00000175324				271	0	0	245	15	5.76923
CHRNA6	0	genome.wustl.edu	37	8	42611455	42611455	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	8	42611455	42611455	G	A	SNP	CHRNA6	ENST00000276410	human	ensembl	74_37	-1	known	missense	c.887	p.T296I	1.000	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,tigrfam_Neur_channel	pfam_Neurotrans-gated_channel_TM,pfam_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,prints_Nicotinic_acetylcholine_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	CHRNA6	HGNC	ENSG00000147434				116	0	0	109	26	19.2593
MCM4	0	genome.wustl.edu	37	8	48878843	48878843	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	8	48878843	48878843	C	T	SNP	MCM4	ENST00000262105	human	ensembl	74_37	+1	known	missense	c.929	p.A310V	0.891	superfamily_NA-bd_OB-fold,smart_MCM_DNA-dep_ATPase	pfam_MCM_DNA-dep_ATPase,pfam_Mg_chelatse_chII,pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA-3,superfamily_NA-bd_OB-fold,superfamily_P-loop_NTPase,smart_MCM_DNA-dep_ATPase,pfscan_MCM_DNA-dep_ATPase,prints_MCM_4,prints_MCM_DNA-dep_ATPase	-	no_errors	MCM4	HGNC	ENSG00000104738				99	0	0	88	16	15.3846
ST18	0	genome.wustl.edu	37	8	53079492	53079492	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	8	53079492	53079492	C	T	SNP	ST18	ENST00000276480	human	ensembl	74_37	-1	known	missense	c.1124	p.G375D	1.000	pfam_Znf_C2HC	pfam_Myelin_TF,pfam_Znf_C2HC	-	no_errors	ST18	HGNC	ENSG00000147488				199	0	0	141	30	17.5439
RP1	0	genome.wustl.edu	37	8	55533959	55533959	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	8	55533959	55533959	G	A	SNP	RP1	ENST00000220676	human	ensembl	74_37	+1	known	missense	c.433	p.A145T	0.009	NULL	pfam_Doublecortin_dom,smart_Doublecortin_dom,pfscan_Doublecortin_dom	-	no_errors	RP1	HGNC	ENSG00000104237				143	0	0	108	20	15.625
RP1	0	genome.wustl.edu	37	8	55534032	55534032	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	8	55534032	55534032	C	T	SNP	RP1	ENST00000220676	human	ensembl	74_37	+1	known	missense	c.506	p.A169V	0.000	smart_Doublecortin_dom,pfscan_Doublecortin_dom	pfam_Doublecortin_dom,smart_Doublecortin_dom,pfscan_Doublecortin_dom	-	no_errors	RP1	HGNC	ENSG00000104237				222	1	0.44843	179	29	13.9423
TGS1	0	genome.wustl.edu	37	8	56698411	56698411	+	Silent	SNP	A	A	G			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	8	56698411	56698411	A	G	SNP	TGS1	ENST00000260129	human	ensembl	74_37	+1	known	silent	c.300	p.P100	0.578	NULL	pfam_RNA_cap_Gua-N2-MeTrfase,pfam_RNA_methylase_dom,pfam_tRNA_Trfase_Trm5/Tyw2	-	no_errors	TGS1	HGNC	ENSG00000137574				172	0	0	105	21	16.6667
CHD7	0	genome.wustl.edu	37	8	61655388	61655388	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	8	61655388	61655388	C	T	SNP	CHD7	ENST00000423902	human	ensembl	74_37	+1	known	missense	c.1397	p.S466L	1.000	NULL	pfam_SNF2_N,pfam_BRK_domain,pfam_Chromo_domain,pfam_Helicase_C,superfamily_P-loop_NTPase,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,smart_BRK_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD7	HGNC	ENSG00000171316				38	0	0	32	5	13.5135
ANGPT2	0	genome.wustl.edu	37	8	6372237	6372237	+	Silent	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	8	6372237	6372237	G	A	SNP	ANGPT2	ENST00000325203	human	ensembl	74_37	-1	known	silent	c.993	p.G331	1.000	pfam_Fibrinogen_a/b/g_C_dom,superfamily_Fibrinogen_a/b/g_C_dom,smart_Fibrinogen_a/b/g_C_dom	pfam_Fibrinogen_a/b/g_C_dom,superfamily_Fibrinogen_a/b/g_C_dom,smart_Fibrinogen_a/b/g_C_dom	-	no_errors	ANGPT2	HGNC	ENSG00000091879				351	0	0	236	48	16.9014
CYP7B1	0	genome.wustl.edu	37	8	65528501	65528501	+	Silent	SNP	T	T	C			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	8	65528501	65528501	T	C	SNP	CYP7B1	ENST00000310193	human	ensembl	74_37	-1	known	silent	c.597	p.K199	0.040	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_E_grp-I,prints_Cyt_P450	-	no_errors	CYP7B1	HGNC	ENSG00000172817				96	0	0	51	11	17.7419
ADHFE1	0	genome.wustl.edu	37	8	67361171	67361171	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	8	67361171	67361171	C	T	SNP	ADHFE1	ENST00000396623	human	ensembl	74_37	+1	known	nonsense	c.700	p.R234*	0.883	pfam_ADH_Fe	pfam_ADH_Fe	-	no_errors	ADHFE1	HGNC	ENSG00000147576				377	0	0	274	60	17.9641
PREX2	0	genome.wustl.edu	37	8	68956736	68956736	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	8	68956736	68956736	G	A	SNP	PREX2	ENST00000288368	human	ensembl	74_37	+1	known	missense	c.854	p.S285N	1.000	smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_DH-domain,pfam_DEP_dom,pfam_PDZ,superfamily_DH-domain,superfamily_PDZ,smart_DH-domain,smart_Pleckstrin_homology,smart_DEP_dom,smart_PDZ,pfscan_DEP_dom,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PREX2	HGNC	ENSG00000046889				134	0	0	96	10	9.43396
SULF1	0	genome.wustl.edu	37	8	70541824	70541824	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	8	70541824	70541824	C	T	SNP	SULF1	ENST00000260128	human	ensembl	74_37	+1	known	missense	c.2194	p.R732W	0.970	superfamily_Alkaline_phosphatase_core,pirsf_Extracellular_sulfatase	pfam_Sulfatase,pfam_Extracellular_sulfatase_C,pfam_Phosphodiest/P_Trfase,superfamily_Alkaline_phosphatase_core,pirsf_Extracellular_sulfatase	-	no_errors	SULF1	HGNC	ENSG00000137573				191	0	0	131	19	12.6667
XKR9	0	genome.wustl.edu	37	8	71646272	71646272	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	8	71646272	71646272	G	A	SNP	XKR9	ENST00000408926	human	ensembl	74_37	+1	known	nonsense	c.735	p.W245*	1.000	pfam_Transport_prot_XK	pfam_Transport_prot_XK	-	no_errors	XKR9	HGNC	ENSG00000221947				107	0	0	61	7	10.2941
CRISPLD1	0	genome.wustl.edu	37	8	75898440	75898440	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	8	75898440	75898440	G	A	SNP	CRISPLD1	ENST00000262207	human	ensembl	74_37	+1	known	missense	c.218	p.R73Q	1.000	pfam_CAP_domain,superfamily_CAP_domain,smart_Allrgn_V5/Tpx1	pfam_LCCL,pfam_CAP_domain,superfamily_CAP_domain,superfamily_LCCL,smart_Allrgn_V5/Tpx1,smart_LCCL,pfscan_LCCL,prints_Allrgn_V5/Tpx1	-	no_errors	CRISPLD1	HGNC	ENSG00000121005				147	1	0.675676	129	20	13.4228
ZFHX4	0	genome.wustl.edu	37	8	77766151	77766151	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	8	77766151	77766151	A	G	SNP	ZFHX4	ENST00000521891	human	ensembl	74_37	+1	known	missense	c.6994	p.K2332E	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Homeobox_dom,superfamily_Homeodomain-like,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Znf_C2H2-like,smart_Znf_U1,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	ZFHX4	HGNC	ENSG00000091656				212	0	0	179	36	16.7442
PSKH2	0	genome.wustl.edu	37	8	87076335	87076335	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	8	87076335	87076335	C	A	SNP	PSKH2	ENST00000276616	human	ensembl	74_37	-1	known	missense	c.711	p.K237N	0.998	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	PSKH2	HGNC	ENSG00000147613				164	1	0.606061	101	11	9.82143
DECR1	0	genome.wustl.edu	37	8	91013752	91013752	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	8	91013752	91013752	T	C	SNP	DECR1	ENST00000220764	human	ensembl	74_37	+1	known	missense	c.32	p.L11P	0.001	NULL	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,prints_Glc/ribitol_DH	-	no_errors	DECR1	HGNC	ENSG00000104325				49	0	0	40	5	11.1111
DECR1	0	genome.wustl.edu	37	8	91031391	91031391	+	Silent	SNP	A	A	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	8	91031391	91031391	A	T	SNP	DECR1	ENST00000220764	human	ensembl	74_37	+1	known	silent	c.408	p.G136	0.704	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,prints_Glc/ribitol_DH	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,prints_Glc/ribitol_DH	-	no_errors	DECR1	HGNC	ENSG00000104325				74	0	0	45	7	13.4615
RUNX1T1	0	genome.wustl.edu	37	8	93029539	93029539	+	Silent	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	8	93029539	93029539	C	T	SNP	RUNX1T1	ENST00000436581	human	ensembl	74_37	-1	known	silent	c.174	p.T58	1.000	NULL	pfam_NHR2,pfam_TAFH_NHR1,pfam_Znf_MYND,smart_TAFH_NHR1,pfscan_TAFH_NHR1,pfscan_Znf_MYND,prints_ETO,prints_MTG8	-	no_errors	RUNX1T1	HGNC	ENSG00000079102				148	0	0	122	18	12.8571
CDH17	0	genome.wustl.edu	37	8	95188800	95188800	+	Silent	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	8	95188800	95188800	G	A	SNP	CDH17	ENST00000027335	human	ensembl	74_37	-1	known	silent	c.393	p.Y131	0.890	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH17	HGNC	ENSG00000079112				200	0	0	150	40	21.0526
KIAA1429	0	genome.wustl.edu	37	8	95531575	95531575	+	Silent	SNP	A	A	G			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	8	95531575	95531575	A	G	SNP	KIAA1429	ENST00000297591	human	ensembl	74_37	-1	known	silent	c.2151	p.G717	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	KIAA1429	HGNC	ENSG00000164944				119	0	0	110	7	5.98291
INTS8	0	genome.wustl.edu	37	8	95888348	95888348	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	8	95888348	95888348	C	T	SNP	INTS8	ENST00000523731	human	ensembl	74_37	+1	known	missense	c.2735	p.A912V	1.000	NULL	NULL	-	no_errors	INTS8	HGNC	ENSG00000164941				118	0	0	77	13	14.4444
CCNE2	0	genome.wustl.edu	37	8	95906149	95906149	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	8	95906149	95906149	C	T	SNP	CCNE2	ENST00000519889	human	ensembl	74_37	-1	known	missense	c.163	p.G55S	0.260	NULL	NULL	-	no_errors	CCNE2	HGNC	ENSG00000175305				259	0	0	213	31	12.7049
NDUFAF6	0	genome.wustl.edu	37	8	96044227	96044227	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	8	96044227	96044227	C	T	SNP	NDUFAF6	ENST00000396124	human	ensembl	74_37	+1	known	missense	c.202	p.R68W	1.000	pfam_Squ/phyt_synthse,superfamily_Terpenoid_synth	pfam_Squ/phyt_synthse,superfamily_Terpenoid_synth	-	no_errors	NDUFAF6	HGNC	ENSG00000156170				152	0	0	107	26	19.5489
MATN2	0	genome.wustl.edu	37	8	99030335	99030335	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	8	99030335	99030335	C	T	SNP	MATN2	ENST00000254898	human	ensembl	74_37	+1	known	missense	c.1810	p.R604C	0.739	pfam_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom	pfam_VWF_A,pfam_EGF-like_Ca-bd_dom,pfam_EG-like_dom,pfam_Matrilin_coiled-coil_trimer,smart_VWF_A,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom,pfscan_VWF_A	-	no_errors	MATN2	HGNC	ENSG00000132561				230	0	0	212	28	11.6667
OSR2	0	genome.wustl.edu	37	8	99961765	99961765	+	Silent	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	8	99961765	99961765	G	A	SNP	OSR2	ENST00000457907	human	ensembl	74_37	+1	known	silent	c.948	p.T316	0.672	pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	OSR2	HGNC	ENSG00000164920				229	0	0	161	37	18.6869
COL15A1	0	genome.wustl.edu	37	9	101706316	101706316	+	RNA	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	9	101706316	101706316	G	A	SNP	COL15A1	ENST00000467052	human	ensembl	74_37	+1	putative	rna	NULL	NULL	0.002	-	-	-	no_errors	COL15A1	HGNC	ENSG00000204291				66	0	0	44	8	15.3846
INVS	0	genome.wustl.edu	37	9	103008902	103008902	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	9	103008902	103008902	C	T	SNP	INVS	ENST00000262457	human	ensembl	74_37	+1	known	missense	c.911	p.T304M	1.000	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_IQ_motif_EF-hand-BS,superfamily_Ankyrin_rpt-contain_dom,superfamily_P-loop_NTPase,smart_Ankyrin_rpt,smart_IQ_motif_EF-hand-BS,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_IQ_motif_EF-hand-BS,prints_Ankyrin_rpt	-	no_errors	INVS	HGNC	ENSG00000119509				68	0	0	39	10	20.4082
MURC	0	genome.wustl.edu	37	9	103340555	103340555	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	9	103340555	103340555	G	A	SNP	MURC	ENST00000307584	human	ensembl	74_37	+1	known	missense	c.130	p.V44M	0.910	NULL	NULL	-	no_errors	MURC	HGNC	ENSG00000170681				131	0	0	64	28	30.4348
RNF20	0	genome.wustl.edu	37	9	104324640	104324640	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	9	104324640	104324640	G	A	SNP	RNF20	ENST00000389120	human	ensembl	74_37	+1	known	missense	c.2864	p.R955H	1.000	smart_Znf_RING,pfscan_Znf_RING	superfamily_STAT_TF_coiled-coil,superfamily_Prefoldin,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF20	HGNC	ENSG00000155827				155	0	0	87	21	19.4444
GRIN3A	0	genome.wustl.edu	37	9	104449155	104449155	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	9	104449155	104449155	T	C	SNP	GRIN3A	ENST00000361820	human	ensembl	74_37	-1	known	missense	c.1027	p.T343A	1.000	superfamily_Peripla_BP_I	pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,superfamily_Peripla_BP_I,smart_Glu_rcpt_Glu/Gly-bd,smart_Iontro_glu_rcpt,prints_NMDA_rcpt	-	no_errors	GRIN3A	HGNC	ENSG00000198785				78	0	0	50	19	27.5362
ABCA1	0	genome.wustl.edu	37	9	107645430	107645430	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	9	107645430	107645430	C	T	SNP	ABCA1	ENST00000374736	human	ensembl	74_37	-1	known	missense	c.311	p.R104H	1.000	NULL	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA1	HGNC	ENSG00000165029				93	0	0	68	15	18.0723
CDC26	0	genome.wustl.edu	37	9	116029676	116029676	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	9	116029676	116029676	C	A	SNP	CDC26	ENST00000374206	human	ensembl	74_37	-1	known	missense	c.125	p.S42I	1.000	pfam_APC_suCDC26	pfam_APC_suCDC26	-	no_errors	CDC26	HGNC	ENSG00000176386				156	0	0	130	24	15.5844
FOXD4	0	genome.wustl.edu	37	9	116989	116989	+	Silent	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	9	116989	116989	G	A	SNP	FOXD4	ENST00000382500	human	ensembl	74_37	-1	known	silent	c.1131	p.C377	0.818	NULL	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXD4	HGNC	ENSG00000170122				113	0	0	68	19	21.8391
TLR4	0	genome.wustl.edu	37	9	120474910	120474910	+	Silent	SNP	T	T	C			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	9	120474910	120474910	T	C	SNP	TLR4	ENST00000355622	human	ensembl	74_37	+1	known	silent	c.504	p.P168	0.001	pirsf_Toll-like_receptor,smart_Leu-rich_rpt_typical-subtyp	pirsf_Toll-like_receptor,pfam_TIR_dom,pfam_Leu-rich_rpt,superfamily_TIR_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_TIR_dom,pfscan_TIR_dom	-	no_errors	TLR4	HGNC	ENSG00000136869				183	0	0	109	28	20.438
CBWD1	0	genome.wustl.edu	37	9	121993	121993	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	9	121993	121993	T	C	SNP	CBWD1	ENST00000356521	human	ensembl	74_37	-1	known	missense	c.1049	p.D350G	0.515	pfam_Cbl_biosynth_CobW-like_C,superfamily_Cbl_biosynth_CobW-like_C	pfam_CobW/HypB/UreG_dom,pfam_Cbl_biosynth_CobW-like_C,superfamily_P-loop_NTPase,superfamily_Cbl_biosynth_CobW-like_C	-	no_errors	CBWD1	HGNC	ENSG00000172785				154	0	0	68	17	20
CDK5RAP2	0	genome.wustl.edu	37	9	123220813	123220813	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	9	123220813	123220813	C	T	SNP	CDK5RAP2	ENST00000349780	human	ensembl	74_37	-1	known	missense	c.2290	p.A764T	0.000	NULL	pfam_Spindle_assoc	-	no_errors	CDK5RAP2	HGNC	ENSG00000136861				139	0	0	68	21	23.5955
C5	0	genome.wustl.edu	37	9	123723809	123723809	+	Silent	SNP	A	A	G			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	9	123723809	123723809	A	G	SNP	C5	ENST00000223642	human	ensembl	74_37	-1	known	silent	c.4539	p.N1513	0.000	superfamily_A-macroglobulin_rcpt-bd	pfam_A2M_comp,pfam_Macroglobln_a2,pfam_A2M_N_2,pfam_A-macroglobulin_rcpt-bd,pfam_Netrin_module_non-TIMP,pfam_A2M_N,pfam_Anaphylatoxin/fibulin,superfamily_Terpenoid_cyclase/PrenylTrfase,superfamily_TIMP-like_OB-fold,superfamily_A-macroglobulin_rcpt-bd,superfamily_Anaphylatoxin_comp_syst,smart_Anaphylatoxin/fibulin,smart_Netrin_module_non-TIMP,pfscan_Anaphylatoxin/fibulin,pfscan_Netrin_domain,prints_Anaphylatoxn_comp_syst_dom	-	no_errors	C5	HGNC	ENSG00000106804				71	0	0	57	14	19.7183
OR1L6	0	genome.wustl.edu	37	9	125512575	125512575	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	9	125512575	125512575	A	T	SNP	OR1L6	ENST00000373684	human	ensembl	74_37	+1	known	missense	c.557	p.C186F	0.608	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR1L6	HGNC	ENSG00000171459				325	0	0	186	53	22.1757
ZBTB26	0	genome.wustl.edu	37	9	125681387	125681387	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	9	125681387	125681387	G	A	SNP	ZBTB26	ENST00000373654	human	ensembl	74_37	-1	known	missense	c.827	p.P276L	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB26	HGNC	ENSG00000171448				242	0	0	143	35	19.6629
SCAI	0	genome.wustl.edu	37	9	127733710	127733710	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	9	127733710	127733710	C	T	SNP	SCAI	ENST00000373549	human	ensembl	74_37	-1	known	missense	c.1682	p.R561H	1.000	pfam_DUF3550,pirsf_UCP013022	pfam_DUF3550,pirsf_UCP013022	-	no_errors	SCAI	HGNC	ENSG00000173611				72	0	0	35	6	14.6341
MVB12B	0	genome.wustl.edu	37	9	129243571	129243571	+	RNA	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	9	129243571	129243571	C	T	SNP	MVB12B	ENST00000485886	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	MVB12B	HGNC	ENSG00000196814				158	0	0	101	35	25.7353
TTC16	0	genome.wustl.edu	37	9	130486410	130486410	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	9	130486410	130486410	A	G	SNP	TTC16	ENST00000373289	human	ensembl	74_37	+1	known	missense	c.884	p.Y295C	0.996	smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	pfam_TPR_2,pfam_TPR_1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC16	HGNC	ENSG00000167094				50	0	0	35	8	18.6047
PTGES2	0	genome.wustl.edu	37	9	130884666	130884666	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	9	130884666	130884666	C	T	SNP	PTGES2	ENST00000338961	human	ensembl	74_37	-1	known	missense	c.980	p.G327D	1.000	pfam_GST_C,superfamily_Glutathione-S-Trfase_C-like	pfam_Glutaredoxin,pfam_GST_C,superfamily_Glutathione-S-Trfase_C-like,superfamily_Thioredoxin-like_fold	-	no_errors	PTGES2	HGNC	ENSG00000148334				169	0	0	95	23	19.4915
GOLGA2	0	genome.wustl.edu	37	9	131022375	131022375	+	Silent	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	9	131022375	131022375	G	A	SNP	GOLGA2	ENST00000421699	human	ensembl	74_37	-1	known	silent	c.1771	p.L591	1.000	NULL	superfamily_CofA_tubulin-bd	-	no_errors	GOLGA2	HGNC	ENSG00000167110				140	0	0	94	21	18.2609
ZER1	0	genome.wustl.edu	37	9	131495728	131495728	+	Silent	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	9	131495728	131495728	C	T	SNP	ZER1	ENST00000291900	human	ensembl	74_37	-1	known	silent	c.2220	p.R740	0.997	superfamily_ARM-type_fold	superfamily_ARM-type_fold,smart_Armadillo	-	no_errors	ZER1	HGNC	ENSG00000160445				47	0	0	30	8	21.0526
CCBL1	0	genome.wustl.edu	37	9	131604977	131604977	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	9	131604977	131604977	C	T	SNP	CCBL1	ENST00000436267	human	ensembl	74_37	-1	known	missense	c.439	p.A147T	0.975	pfam_Aminotransferase_I/II,superfamily_PyrdxlP-dep_Trfase	pfam_Aminotransferase_I/II,superfamily_PyrdxlP-dep_Trfase	-	no_errors	CCBL1	HGNC	ENSG00000171097				99	0	0	53	18	25.3521
PPP2R4	0	genome.wustl.edu	37	9	131898802	131898802	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	9	131898802	131898802	G	A	SNP	PPP2R4	ENST00000452489	human	ensembl	74_37	+1	known	missense	c.718	p.G240S	1.000	pfam_Phstyr_phstse_ac,pirsf_Phstyr_phstse_ac	pfam_Phstyr_phstse_ac,pirsf_Phstyr_phstse_ac	-	no_errors	PPP2R4	HGNC	ENSG00000119383				497	1	0.200803	295	101	25.5051
PRRC2B	0	genome.wustl.edu	37	9	134350275	134350275	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	9	134350275	134350275	C	A	SNP	PRRC2B	ENST00000357304	human	ensembl	74_37	+1	known	missense	c.2759	p.P920H	0.046	NULL	pfam_BAT2_N	-	no_errors	PRRC2B	HGNC	ENSG00000130723				11	0	0	8	5	38.4615
RAPGEF1	0	genome.wustl.edu	37	9	134455650	134455650	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	9	134455650	134455650	G	A	SNP	RAPGEF1	ENST00000372190	human	ensembl	74_37	-1	known	missense	c.3137	p.A1046V	1.000	superfamily_Ras_GEF_dom,smart_RasGRF_CDC25,pfscan_RasGRF_CDC25	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,superfamily_Ras_GEF_dom,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RAPGEF1	HGNC	ENSG00000107263				53	0	0	40	12	23.0769
SETX	0	genome.wustl.edu	37	9	135176111	135176111	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	9	135176111	135176111	T	C	SNP	SETX	ENST00000372169	human	ensembl	74_37	-1	known	missense	c.5454	p.I1818M	0.001	superfamily_P-loop_NTPase	superfamily_P-loop_NTPase	-	no_errors	SETX	HGNC	ENSG00000107290				185	0	0	123	29	19.0789
RALGDS	0	genome.wustl.edu	37	9	135978272	135978272	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	9	135978272	135978272	C	T	SNP	RALGDS	ENST00000542690	human	ensembl	74_37	-1	known	missense	c.2020	p.A674T	0.996	superfamily_Ras_GEF_dom,smart_RasGRF_CDC25,pfscan_RasGRF_CDC25	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,pfam_Ras-assoc,superfamily_Ras_GEF_dom,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,smart_Ras-assoc,pfscan_Ras-assoc,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RALGDS	HGNC	ENSG00000160271				59	0	0	35	11	23.913
LCN9	0	genome.wustl.edu	37	9	138557130	138557130	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	9	138557130	138557130	A	G	SNP	LCN9	ENST00000277526	human	ensembl	74_37	+1	known	missense	c.347	p.Y116C	0.824	pfam_Lipocln_cytosolic_FA-bd_dom,superfamily_Calycin-like,prints_Maj_urinary,prints_Blactoglobulin	pfam_Lipocln_cytosolic_FA-bd_dom,superfamily_Calycin-like,prints_Maj_urinary,prints_Odour-bd,prints_Blactoglobulin	-	no_errors	LCN9	HGNC	ENSG00000148386				13	0	0	5	2	28.5714
KCNT1	0	genome.wustl.edu	37	9	138667192	138667192	+	Silent	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	9	138667192	138667192	C	T	SNP	KCNT1	ENST00000298480	human	ensembl	74_37	+1	known	silent	c.2280	p.I760	0.988	NULL	pfam_K_chnl_Ca-activ_BK_asu,pfam_2pore_dom_K_chnl_dom	-	no_errors	KCNT1	HGNC	ENSG00000107147				149	0	0	84	27	24.3243
C9orf69	0	genome.wustl.edu	37	9	139008560	139008560	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	9	139008560	139008560	T	C	SNP	C9orf69	ENST00000557985	human	ensembl	74_37	-1	known	missense	c.187	p.S63G	1.000	NULL	NULL	-	no_errors	C9orf69	HGNC	ENSG00000238227				94	0	0	64	14	17.9487
LCN6	0	genome.wustl.edu	37	9	139639195	139639195	+	Splice_Site	SNP	T	T	C			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	9	139639195	139639195	T	C	SNP	LCN6	ENST00000341206	human	ensembl	74_37	-1	known	splice_site	c.413-2	e5-2	0.739	-	-	-	no_errors	LCN6	HGNC	ENSG00000267206				33	0	0	20	4	16.6667
KIAA1984	0	genome.wustl.edu	37	9	139694927	139694927	+	Silent	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	9	139694927	139694927	G	A	SNP	KIAA1984	ENST00000338005	human	ensembl	74_37	+1	known	silent	c.525	p.L175	0.958	NULL	NULL	-	no_errors	KIAA1984	HGNC	ENSG00000213213				31	0	0	24	7	22.5806
ABCA2	0	genome.wustl.edu	37	9	139905558	139905558	+	Splice_Site	SNP	C	C	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	9	139905558	139905558	C	A	SNP	ABCA2	ENST00000265662	human	ensembl	74_37	-1	known	splice_site	c.5924-1	e39-1	1.000	-	-	-	no_errors	ABCA2	HGNC	ENSG00000107331				75	0	0	53	18	25.3521
PNPLA7	0	genome.wustl.edu	37	9	140358954	140358954	+	RNA	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	9	140358954	140358954	G	A	SNP	PNPLA7	ENST00000487228	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	PNPLA7	HGNC	ENSG00000130653				116	0	0	69	14	16.8675
CACNA1B	0	genome.wustl.edu	37	9	140880954	140880954	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	9	140880954	140880954	T	C	SNP	CACNA1B	ENST00000371355	human	ensembl	74_37	+1	known	missense	c.1862	p.I621T	1.000	pfam_Ion_trans_dom,pfam_PKD1_2_channel	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,pfscan_EF_hand_dom,prints_VDCCAlpha1,prints_VDCC_N_a1su,prints_PKD_2	-	no_errors	CACNA1B	HGNC	ENSG00000148408				47	0	0	35	16	31.3725
CACNA1B	0	genome.wustl.edu	37	9	140968005	140968005	+	Silent	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	9	140968005	140968005	C	T	SNP	CACNA1B	ENST00000371355	human	ensembl	74_37	+1	known	silent	c.4743	p.R1581	0.938	pfam_Ion_trans_dom,pfam_PKD1_2_channel	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,pfscan_EF_hand_dom,prints_VDCCAlpha1,prints_VDCC_N_a1su,prints_PKD_2	-	no_errors	CACNA1B	HGNC	ENSG00000148408				166	0	0	95	21	18.1034
CBWD1	0	genome.wustl.edu	37	9	164038	164038	+	Splice_Site	SNP	C	C	G			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	9	164038	164038	C	G	SNP	CBWD1	ENST00000356521	human	ensembl	74_37	-1	known	splice_site	c.431-1	e5-1	1.000	-	-	-	no_errors	CBWD1	HGNC	ENSG00000172785				117	0	0	87	13	13
BNC2	0	genome.wustl.edu	37	9	16436812	16436812	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	9	16436812	16436812	G	T	SNP	BNC2	ENST00000380672	human	ensembl	74_37	-1	known	nonsense	c.1380	p.Y460*	0.988	smart_Znf_C2H2-like,pfscan_Znf_C2H2	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	BNC2	HGNC	ENSG00000173068				166	0	0	61	24	28.2353
CDKN2A	0	genome.wustl.edu	37	9	21994370	21994370	+	Silent	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	9	21994370	21994370	G	A	SNP	CDKN2A	ENST00000361570	human	ensembl	74_37	-1	known	silent	c.84	p.G28	0.122	NULL	pfam_Cyclin_kinase-Inhib_2A	-	no_errors	CDKN2A	HGNC	ENSG00000147889				23	0	0	22	6	21.4286
KCNV2	0	genome.wustl.edu	37	9	2718573	2718573	+	Silent	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	9	2718573	2718573	G	A	SNP	KCNV2	ENST00000382082	human	ensembl	74_37	+1	known	silent	c.834	p.A278	0.460	prints_K_chnl,prints_K_chnl_volt-dep_Kv9	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,prints_K_chnl,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv3	-	no_errors	KCNV2	HGNC	ENSG00000168263				40	0	0	26	10	27.7778
ALDH1B1	0	genome.wustl.edu	37	9	38395863	38395863	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	9	38395863	38395863	T	C	SNP	ALDH1B1	ENST00000377698	human	ensembl	74_37	+1	known	missense	c.118	p.F40L	0.997	superfamily_Ald_DH/histidinol_DH	pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH	-	no_errors	ALDH1B1	HGNC	ENSG00000137124				174	0	0	134	20	12.987
JAK2	0	genome.wustl.edu	37	9	5054649	5054649	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	9	5054649	5054649	G	A	SNP	JAK2	ENST00000381652	human	ensembl	74_37	+1	known	missense	c.701	p.R234H	1.000	superfamily_FERM_central,smart_Band_41_domain,pirsf_Tyr_kinase_non-rcpt_Jak/Tyk2,pfscan_FERM_domain	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_SH2,superfamily_Kinase-like_dom,superfamily_FERM_central,smart_Band_41_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Tyr_kinase_non-rcpt_Jak/Tyk2,pfscan_FERM_domain,pfscan_SH2,pfscan_Prot_kinase_dom,prints_Tyr_kinase_non-rcpt_Jak/Tyk2,prints_Tyr_kinase_non-rcpt_Jak2,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	JAK2	HGNC	ENSG00000096968				213	0	0	102	26	20.3125
GLDC	0	genome.wustl.edu	37	9	6553433	6553433	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	9	6553433	6553433	C	A	SNP	GLDC	ENST00000321612	human	ensembl	74_37	-1	known	nonsense	c.2392	p.G798*	1.000	superfamily_PyrdxlP-dep_Trfase,tigrfam_GDC_P_homo	pfam_GDC-P_N,pfam_ArAA_b-elim_lyase/Thr_aldolase,superfamily_PyrdxlP-dep_Trfase,tigrfam_GDC_P_homo	-	no_errors	GLDC	HGNC	ENSG00000178445				118	0	0	67	23	25.5556
KDM4C	0	genome.wustl.edu	37	9	7015923	7015923	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	9	7015923	7015923	G	C	SNP	KDM4C	ENST00000381309	human	ensembl	74_37	+1	known	missense	c.2253	p.W751C	1.000	superfamily_Znf_FYVE_PHD	pfam_JmjC_dom,pfam_TF_JmjN,superfamily_Znf_FYVE_PHD,superfamily_Chorismate_mutase_type_II,smart_TF_JmjN,smart_JmjC_dom,smart_Znf_PHD,smart_Tudor,pfscan_TF_JmjN,pfscan_JmjC_dom	-	no_errors	KDM4C	HGNC	ENSG00000107077				139	0	0	71	13	15.4762
TRPM3	0	genome.wustl.edu	37	9	73213556	73213556	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	9	73213556	73213556	G	A	SNP	TRPM3	ENST00000423814	human	ensembl	74_37	-1	known	nonsense	c.2872	p.Q958*	1.000	NULL	pfam_Ion_trans_dom	-	no_errors	TRPM3	HGNC	ENSG00000083067				190	0	0	115	33	22.2973
ALDH1A1	0	genome.wustl.edu	37	9	75543858	75543858	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	9	75543858	75543858	C	T	SNP	ALDH1A1	ENST00000297785	human	ensembl	74_37	-1	known	missense	c.392	p.R131H	0.997	pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH	pfam_Aldehyde_DH_dom,pfam_Acyl-CoA_reduct_LuxC,superfamily_Ald_DH/histidinol_DH	-	no_errors	ALDH1A1	HGNC	ENSG00000165092				198	0	0	144	34	19.1011
TRPM6	0	genome.wustl.edu	37	9	77418752	77418752	+	Silent	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	9	77418752	77418752	C	T	SNP	TRPM6	ENST00000451710	human	ensembl	74_37	-1	known	silent	c.1689	p.L563	0.550	NULL	pfam_MHCK_EF2_kinase,pfam_Ion_trans_dom,superfamily_Kinase-like_dom,smart_MHCK_EF2_kinase,pfscan_MHCK_EF2_kinase	-	no_errors	TRPM6	HGNC	ENSG00000119121				221	0	0	132	21	13.7255
RASEF	0	genome.wustl.edu	37	9	85677651	85677651	+	Silent	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	9	85677651	85677651	C	T	SNP	RASEF	ENST00000376447	human	ensembl	74_37	-1	known	silent	c.132	p.P44	0.413	pfscan_EF_hand_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,superfamily_Vinculin/catenin,smart_EF_hand_dom,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,pfscan_EF_hand_dom,tigrfam_Small_GTP-bd_dom	-	no_errors	RASEF	HGNC	ENSG00000165105				9	0	0	7	6	46.1538
AGTPBP1	0	genome.wustl.edu	37	9	88193897	88193897	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	9	88193897	88193897	C	A	SNP	AGTPBP1	ENST00000376109	human	ensembl	74_37	-1	known	nonsense	c.3316	p.G1106*	1.000	pfam_Peptidase_M14	pfam_Peptidase_M14,superfamily_ARM-type_fold	-	no_errors	AGTPBP1	HGNC	ENSG00000135049				262	0	0	128	28	17.9487
GOLM1	0	genome.wustl.edu	37	9	88694210	88694210	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	9	88694210	88694210	C	T	SNP	GOLM1	ENST00000388711	human	ensembl	74_37	-1	known	missense	c.26	p.R9H	1.000	NULL	NULL	-	no_errors	GOLM1	HGNC	ENSG00000135052				53	0	0	27	11	28.9474
ZCCHC6	0	genome.wustl.edu	37	9	88937856	88937856	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	9	88937856	88937856	T	C	SNP	ZCCHC6	ENST00000375963	human	ensembl	74_37	-1	known	missense	c.2809	p.K937E	0.190	NULL	pfam_PAP_assoc,pfam_Znf_CCHC,superfamily_Znf_CCHC,smart_Znf_U1,smart_Znf_CCHC,pfscan_Znf_CCHC	-	no_errors	ZCCHC6	HGNC	ENSG00000083223				120	0	0	67	5	6.94444
FGD3	0	genome.wustl.edu	37	9	95738612	95738612	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	9	95738612	95738612	G	A	SNP	FGD3	ENST00000337352	human	ensembl	74_37	+1	known	missense	c.74	p.G25D	0.012	NULL	pfam_DH-domain,pfam_Pleckstrin_homology,pfam_Znf_FYVE,superfamily_DH-domain,superfamily_Znf_FYVE_PHD,smart_DH-domain,smart_Pleckstrin_homology,smart_Znf_FYVE,pfscan_Pleckstrin_homology,pfscan_Znf_FYVE-rel,pfscan_DH-domain	-	no_errors	FGD3	HGNC	ENSG00000127084				36	0	0	17	6	26.087
PTPDC1	0	genome.wustl.edu	37	9	96846852	96846852	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	9	96846852	96846852	C	T	SNP	PTPDC1	ENST00000288976	human	ensembl	74_37	+1	putative	missense	c.40	p.R14C	0.191	NULL	pfam_Dual-sp_phosphatase_cat-dom,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Dual-sp_phosphatase_subgr_cat,smart_Tyr_Pase_cat,pfscan_Tyr/Dual-sp_Pase	-	no_errors	PTPDC1	HGNC	ENSG00000158079				112	0	0	66	21	24.1379
NUTM2G	0	genome.wustl.edu	37	9	99697697	99697697	+	Silent	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	9	99697697	99697697	G	A	SNP	NUTM2G	ENST00000372322	human	ensembl	74_37	+1	known	silent	c.801	p.T267	0.035	NULL	NULL	-	no_errors	NUTM2G	HGNC	ENSG00000188152				91	0	0	73	20	21.5054
KIR2DL2	0	genome.wustl.edu	37	GL000209.1	35660	35660	+	Silent	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	GL000209.1	35660	35660	C	T	SNP	KIR2DL2	ENST00000344867	human	ensembl	74_37	+1	known	silent	c.867	p.S289	NULL	NULL	pfam_Immunoglobulin,smart_Ig_sub	-	no_errors	KIR2DL2	HGNC	ENSG00000215764				103	0	0	51	33	39.2857
BTK	0	genome.wustl.edu	37	X	100609042	100609042	+	RNA	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	X	100609042	100609042	G	A	SNP	BTK	ENST00000488970	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	BTK	HGNC	ENSG00000010671				124	0	0	74	13	14.9425
BHLHB9	0	genome.wustl.edu	37	X	102005017	102005017	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	X	102005017	102005017	G	A	SNP	BHLHB9	ENST00000361229	human	ensembl	74_37	+1	known	missense	c.1094	p.G365D	0.992	pfam_ARM-rpt_dom,superfamily_ARM-type_fold	pfam_ARM-rpt_dom,superfamily_ARM-type_fold	-	no_errors	BHLHB9	HGNC	ENSG00000198908				140	0	0	65	14	17.7215
GLRA4	0	genome.wustl.edu	37	X	102979004	102979004	+	Splice_Site	SNP	A	A	G			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	X	102979004	102979004	A	G	SNP	GLRA4	ENST00000372617	human	ensembl	74_37	-1	known	splice_site	c.494+2	e4+2	1.000	-	-	-	no_errors	GLRA4	HGNC	ENSG00000188828				433	0	0	296	61	17.0868
ESX1	0	genome.wustl.edu	37	X	103495262	103495262	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	X	103495262	103495262	G	A	SNP	ESX1	ENST00000372588	human	ensembl	74_37	-1	known	missense	c.868	p.R290C	0.058	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_POU	-	no_errors	ESX1	HGNC	ENSG00000123576				134	0	0	87	10	10.3093
LHFPL1	0	genome.wustl.edu	37	X	111914251	111914251	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	X	111914251	111914251	G	A	SNP	LHFPL1	ENST00000371968	human	ensembl	74_37	-1	known	missense	c.368	p.A123V	0.973	pfam_Lipome_HGMIC_fus_partner-like	pfam_Lipome_HGMIC_fus_partner-like	-	no_errors	LHFPL1	HGNC	ENSG00000182508				98	0	0	51	17	25
AMOT	0	genome.wustl.edu	37	X	112058802	112058802	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	X	112058802	112058802	T	G	SNP	AMOT	ENST00000371959	human	ensembl	74_37	-1	known	missense	c.1176	p.Q392H	0.071	NULL	pfam_Angiomotin_C,superfamily_Prefoldin,prints_Angiomotin	-	no_errors	AMOT	HGNC	ENSG00000126016				80	0	0	54	16	22.8571
SLC6A14	0	genome.wustl.edu	37	X	115582757	115582757	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	X	115582757	115582757	G	A	SNP	SLC6A14	ENST00000371900	human	ensembl	74_37	+1	known	missense	c.1081	p.A361T	1.000	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport	-	no_errors	SLC6A14	HGNC	ENSG00000087916				299	0	0	195	39	16.6667
WDR44	0	genome.wustl.edu	37	X	117529236	117529236	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	X	117529236	117529236	C	T	SNP	WDR44	ENST00000254029	human	ensembl	74_37	+1	known	nonsense	c.982	p.Q328*	1.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	WDR44	HGNC	ENSG00000131725				87	0	0	42	14	25
ZBTB33	0	genome.wustl.edu	37	X	119387551	119387551	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	X	119387551	119387551	G	C	SNP	ZBTB33	ENST00000326624	human	ensembl	74_37	+1	known	missense	c.281	p.R94T	1.000	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB33	HGNC	ENSG00000177485				219	0	0	118	31	20.8054
TENM1	0	genome.wustl.edu	37	X	123785941	123785941	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	X	123785941	123785941	G	T	SNP	TENM1	ENST00000422452	human	ensembl	74_37	-1	known	missense	c.1402	p.L468M	1.000	NULL	pfam_Ten_N,pfam_EGF_extracell,superfamily_CarboxyPept-like_regulatory,smart_EG-like_dom,pfscan_EG-like_dom,tigrfam_YD	-	no_errors	TENM1	HGNC	ENSG00000009694				127	0	0	62	15	19.4805
DCAF12L2	0	genome.wustl.edu	37	X	125298898	125298898	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	X	125298898	125298898	C	T	SNP	DCAF12L2	ENST00000360028	human	ensembl	74_37	-1	known	missense	c.1010	p.R337H	0.964	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DCAF12L2	HGNC	ENSG00000198354				237	1	0.420168	126	31	19.7452
IGSF1	0	genome.wustl.edu	37	X	130419221	130419221	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	X	130419221	130419221	C	T	SNP	IGSF1	ENST00000370903	human	ensembl	74_37	-1	known	missense	c.599	p.R200H	1.000	smart_Ig_sub,smart_Ig_sub2	pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	IGSF1	HGNC	ENSG00000147255				239	0	0	142	33	18.8571
GPC3	0	genome.wustl.edu	37	X	132887715	132887715	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	X	132887715	132887715	C	T	SNP	GPC3	ENST00000394299	human	ensembl	74_37	-1	known	missense	c.826	p.G276S	1.000	pfam_Glypican	pfam_Glypican	-	no_errors	GPC3	HGNC	ENSG00000147257				325	0	0	187	46	19.7425
MAP7D3	0	genome.wustl.edu	37	X	135313852	135313852	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	X	135313852	135313852	C	T	SNP	MAP7D3	ENST00000370663	human	ensembl	74_37	-1	known	missense	c.1210	p.A404T	0.000	NULL	pfam_MAP7	-	no_errors	MAP7D3	HGNC	ENSG00000129680				209	0	0	131	42	24.2775
SLITRK2	0	genome.wustl.edu	37	X	144904851	144904851	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	X	144904851	144904851	G	A	SNP	SLITRK2	ENST00000370490	human	ensembl	74_37	+1	known	missense	c.908	p.R303Q	1.000	NULL	pfam_Leu-rich_rpt,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	SLITRK2	HGNC	ENSG00000185985				175	0	0	106	25	19.084
GPR50	0	genome.wustl.edu	37	X	150348463	150348463	+	Silent	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	X	150348463	150348463	C	T	SNP	GPR50	ENST00000218316	human	ensembl	74_37	+1	known	silent	c.408	p.Y136	0.918	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_Melatonin_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_Mel_rcpt_1X,prints_GPCR_Rhodpsn,prints_Melatonin_rcpt,prints_NPY_rcpt	-	no_errors	GPR50	HGNC	ENSG00000102195				198	0	0	144	41	22.1622
CNGA2	0	genome.wustl.edu	37	X	150911109	150911109	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	X	150911109	150911109	G	A	SNP	CNGA2	ENST00000329903	human	ensembl	74_37	+1	known	missense	c.584	p.R195H	0.996	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom	-	no_errors	CNGA2	HGNC	ENSG00000183862				214	0	0	118	25	17.4825
ATP2B3	0	genome.wustl.edu	37	X	152845658	152845658	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	X	152845658	152845658	G	A	SNP	ATP2B3	ENST00000263519	human	ensembl	74_37	+1	known	missense	c.3565	p.G1189S	1.000	NULL	pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_cation-transptr_C,pfam_ATP_Ca_trans_C,pfam_HAD-like_dom,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_P-typ_cyto_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Ca-transp_plasma,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP2B3	HGNC	ENSG00000067842				231	0	0	145	20	12.1212
SRPK3	0	genome.wustl.edu	37	X	153048550	153048550	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	X	153048550	153048550	C	T	SNP	SRPK3	ENST00000370101	human	ensembl	74_37	+1	known	missense	c.725	p.A242V	0.810	superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_dom	-	no_errors	SRPK3	HGNC	ENSG00000184343				91	0	0	56	23	29.1139
IRAK1	0	genome.wustl.edu	37	X	153278550	153278550	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	X	153278550	153278550	G	A	SNP	IRAK1	ENST00000369980	human	ensembl	74_37	-1	known	missense	c.1874	p.T625M	0.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Death_domain,superfamily_Kinase-like_dom,superfamily_DEATH-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	IRAK1	HGNC	ENSG00000184216				61	0	0	41	11	21.1538
FLNA	0	genome.wustl.edu	37	X	153577241	153577241	+	Silent	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	X	153577241	153577241	G	A	SNP	FLNA	ENST00000369850	human	ensembl	74_37	-1	known	silent	c.7920	p.S2640	1.000	pfam_Filamin/ABP280_repeat-like,superfamily_Ig_E-set,smart_Filamin,pfscan_Filamin/ABP280_repeat-like	pfam_Filamin/ABP280_repeat-like,pfam_CH-domain,superfamily_CH-domain,superfamily_Ig_E-set,smart_CH-domain,smart_Filamin,pfscan_CH-domain,pfscan_Filamin/ABP280_repeat-like	-	no_errors	FLNA	HGNC	ENSG00000196924				107	0	0	53	18	25.3521
FUNDC2	0	genome.wustl.edu	37	X	154255310	154255310	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	X	154255310	154255310	C	T	SNP	FUNDC2	ENST00000369498	human	ensembl	74_37	+1	known	nonsense	c.97	p.R33*	1.000	NULL	pfam_FUN14	-	no_errors	FUNDC2	HGNC	ENSG00000165775				28	0	0	14	4	22.2222
VAMP7	0	genome.wustl.edu	37	X	155119136	155119136	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	X	155119136	155119136	A	G	SNP	VAMP7	ENST00000262640	human	ensembl	74_37	+1	known	missense	c.7	p.I3V	1.000	superfamily_Longin-like_dom	superfamily_Longin-like_dom,pfscan_Longin_dom	-	no_errors	VAMP7	HGNC	ENSG00000124333				211	0	0	136	10	6.84932
CTPS2	0	genome.wustl.edu	37	X	16685651	16685651	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	X	16685651	16685651	C	T	SNP	CTPS2	ENST00000359276	human	ensembl	74_37	-1	known	missense	c.1282	p.A428T	0.000	pfam_GATASE,pfam_Peptidase_C26,tigrfam_CTP_synthase	pfam_CTP_synthase_N,pfam_GATASE,pfam_Peptidase_C26,superfamily_P-loop_NTPase,tigrfam_CTP_synthase	-	no_errors	CTPS2	HGNC	ENSG00000047230				285	0	0	191	47	19.7479
EIF1AX	0	genome.wustl.edu	37	X	20153899	20153899	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	X	20153899	20153899	C	T	SNP	EIF1AX	ENST00000379607	human	ensembl	74_37	-1	known	missense	c.161	p.G54D	1.000	pfam_RNA-binding_domain_S1_IF1,superfamily_NA-bd_OB-fold,smart_TIF_eIF-1A,pfscan_RNA-binding_domain_S1_IF1,tigrfam_TIF_eIF-1A	pfam_RNA-binding_domain_S1_IF1,superfamily_NA-bd_OB-fold,smart_TIF_eIF-1A,pfscan_RNA-binding_domain_S1_IF1,tigrfam_TIF_eIF-1A	-	no_errors	EIF1AX	HGNC	ENSG00000173674				317	0	0	199	36	15.3191
POLA1	0	genome.wustl.edu	37	X	24732689	24732689	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	X	24732689	24732689	G	A	SNP	POLA1	ENST00000379068	human	ensembl	74_37	+1	known	missense	c.365	p.R122H	0.000	tigrfam_DNA-dir_DNA_pol_B_pol2	pfam_DNA-dir_DNA_pol_B_multi_dom,pfam_DNA-dir_DNA_pol_B_exonuc,pfam_Znf_DNA-dir_DNA_pol_B_alpha,pfam_DNA_pol_a_cat_su_N,superfamily_RNaseH-like_dom,smart_DNA-dir_DNA_pol_B,prints_DNA-dir_DNA_pol_B,tigrfam_DNA-dir_DNA_pol_B_pol2	-	no_errors	POLA1	HGNC	ENSG00000101868				19	0	0	11	4	26.6667
DCAF8L1	0	genome.wustl.edu	37	X	27998141	27998141	+	Silent	SNP	A	A	G			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	X	27998141	27998141	A	G	SNP	DCAF8L1	ENST00000441525	human	ensembl	74_37	-1	known	silent	c.1311	p.N437	0.998	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DCAF8L1	HGNC	ENSG00000226372				84	0	0	65	4	5.7971
DCAF8L1	0	genome.wustl.edu	37	X	27998625	27998625	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	X	27998625	27998625	C	T	SNP	DCAF8L1	ENST00000441525	human	ensembl	74_37	-1	known	missense	c.827	p.C276Y	0.996	superfamily_WD40_repeat_dom,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DCAF8L1	HGNC	ENSG00000226372				145	0	0	78	13	14.2857
DCAF8L1	0	genome.wustl.edu	37	X	27998761	27998761	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	X	27998761	27998761	C	T	SNP	DCAF8L1	ENST00000441525	human	ensembl	74_37	-1	known	missense	c.691	p.V231I	0.987	superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DCAF8L1	HGNC	ENSG00000226372				66	0	0	46	16	25.8065
PPP2R3B	0	genome.wustl.edu	37	X	299579	299579	+	Silent	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	X	299579	299579	G	A	SNP	PPP2R3B	ENST00000390665	human	ensembl	74_37	-1	known	silent	c.1404	p.F468	0.996	NULL	pfscan_EF_hand_dom	-	no_errors	PPP2R3B	HGNC	ENSG00000167393				138	1	0.719424	92	16	14.8148
ARSF	0	genome.wustl.edu	37	X	3021856	3021856	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	X	3021856	3021856	C	T	SNP	ARSF	ENST00000359361	human	ensembl	74_37	+1	known	nonsense	c.1156	p.R386*	0.835	pfam_Sulfatase,superfamily_Alkaline_phosphatase_core	pfam_Sulfatase,pfam_Phosphodiest/P_Trfase,superfamily_Alkaline_phosphatase_core	-	no_errors	ARSF	HGNC	ENSG00000062096				165	0	0	108	30	21.7391
MXRA5	0	genome.wustl.edu	37	X	3229209	3229209	+	Silent	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	X	3229209	3229209	G	A	SNP	MXRA5	ENST00000217939	human	ensembl	74_37	-1	known	silent	c.7035	p.P2345	0.101	pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	MXRA5	HGNC	ENSG00000101825				282	0	0	167	39	18.932
DMD	0	genome.wustl.edu	37	X	33146282	33146282	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	X	33146282	33146282	T	C	SNP	DMD	ENST00000378677	human	ensembl	74_37	-1	known	missense	c.1	p.M1V	1.000	pirsf_Dystrophin/utrophin	pfam_Spectrin_repeat,pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_CH-domain,pfam_Znf_ZZ,pfam_WW_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_WW_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_WW_dom,smart_Znf_ZZ,pirsf_Dystrophin/utrophin,pfscan_CH-domain,pfscan_WW_dom,pfscan_Znf_ZZ	-	no_errors	DMD	HGNC	ENSG00000198947				26	0	0	19	6	24
PRKX	0	genome.wustl.edu	37	X	3592808	3592808	+	Splice_Site	SNP	C	C	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	X	3592808	3592808	C	A	SNP	PRKX	ENST00000262848	human	ensembl	74_37	-1	known	splice_site	c.167-1	e2-1	1.000	-	-	-	no_errors	PRKX	HGNC	ENSG00000183943				159	0	0	93	34	26.7717
USP9X	0	genome.wustl.edu	37	X	41012336	41012336	+	Splice_Site	SNP	T	T	C			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	X	41012336	41012336	T	C	SNP	USP9X	ENST00000324545	human	ensembl	74_37	+1	known	splice_site	c.1897+2	e13+2	1.000	-	-	-	no_errors	USP9X	HGNC	ENSG00000124486				161	0	0	84	18	17.6471
SSX5	0	genome.wustl.edu	37	X	48054732	48054732	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	X	48054732	48054732	C	T	SNP	SSX5	ENST00000311798	human	ensembl	74_37	-1	known	missense	c.63	p.M21I	0.000	NULL	pfam_SSXRD_motif,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box-rel	-	no_errors	SSX5	HGNC	ENSG00000165583				294	0	0	212	57	21.1896
CCNB3	0	genome.wustl.edu	37	X	50053728	50053728	+	Silent	SNP	A	A	G			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	X	50053728	50053728	A	G	SNP	CCNB3	ENST00000276014	human	ensembl	74_37	+1	known	silent	c.2559	p.E853	0.000	NULL	pfam_Cyclin_N,pfam_Cyclin_C-dom,superfamily_Cyclin-like,smart_Cyclin-like	-	no_errors	CCNB3	HGNC	ENSG00000147082				65	0	0	35	6	14.6341
HUWE1	0	genome.wustl.edu	37	X	53586422	53586422	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	X	53586422	53586422	C	T	SNP	HUWE1	ENST00000262854	human	ensembl	74_37	-1	known	missense	c.7808	p.R2603Q	0.999	NULL	pfam_E3_Ub_ligase_DUF913,pfam_HECT,pfam_E3_Ub_ligase_DUF908,pfam_WWE-dom,pfam_UBA/Ts_N,superfamily_HECT,superfamily_UBA-like,superfamily_ARM-type_fold,smart_UBA/transl_elong_EF1B_N_euk,smart_HECT,pfscan_HECT,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_WWE-dom	-	no_errors	HUWE1	HGNC	ENSG00000086758				100	0	0	59	12	16.9014
HUWE1	0	genome.wustl.edu	37	X	53590731	53590731	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	X	53590731	53590731	C	T	SNP	HUWE1	ENST00000262854	human	ensembl	74_37	-1	known	missense	c.7081	p.G2361R	1.000	NULL	pfam_E3_Ub_ligase_DUF913,pfam_HECT,pfam_E3_Ub_ligase_DUF908,pfam_WWE-dom,pfam_UBA/Ts_N,superfamily_HECT,superfamily_UBA-like,superfamily_ARM-type_fold,smart_UBA/transl_elong_EF1B_N_euk,smart_HECT,pfscan_HECT,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_WWE-dom	-	no_errors	HUWE1	HGNC	ENSG00000086758				65	0	0	29	11	27.5
GNL3L	0	genome.wustl.edu	37	X	54578085	54578085	+	Silent	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	X	54578085	54578085	C	T	SNP	GNL3L	ENST00000336470	human	ensembl	74_37	+1	known	silent	c.948	p.G316	0.998	pfam_GTP_binding_domain,prints_GTP_binding_domain	pfam_GTP_binding_domain,pfam_Fe2_transport_prot_B_N,superfamily_P-loop_NTPase,prints_GTP_binding_domain	-	no_errors	GNL3L	HGNC	ENSG00000130119				69	0	0	51	11	17.7419
GNL3L	0	genome.wustl.edu	37	X	54578110	54578110	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	X	54578110	54578110	G	A	SNP	GNL3L	ENST00000336470	human	ensembl	74_37	+1	known	missense	c.973	p.V325M	0.503	NULL	pfam_GTP_binding_domain,pfam_Fe2_transport_prot_B_N,superfamily_P-loop_NTPase,prints_GTP_binding_domain	-	no_errors	GNL3L	HGNC	ENSG00000130119				86	0	0	50	21	29.5775
TRO	0	genome.wustl.edu	37	X	54955519	54955519	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	X	54955519	54955519	A	G	SNP	TRO	ENST00000173898	human	ensembl	74_37	+1	known	missense	c.2362	p.S788G	0.331	NULL	pfam_MAGE,pfscan_MAGE	-	no_errors	TRO	HGNC	ENSG00000067445				131	0	0	101	25	19.8413
TRO	0	genome.wustl.edu	37	X	54955602	54955602	+	Silent	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	X	54955602	54955602	C	T	SNP	TRO	ENST00000173898	human	ensembl	74_37	+1	known	silent	c.2445	p.G815	0.241	NULL	pfam_MAGE,pfscan_MAGE	-	no_errors	TRO	HGNC	ENSG00000067445				95	0	0	70	15	17.6471
NLGN4X	0	genome.wustl.edu	37	X	5821511	5821511	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	X	5821511	5821511	A	G	SNP	NLGN4X	ENST00000381093	human	ensembl	74_37	-1	known	missense	c.1268	p.V423A	1.000	pfam_CarbesteraseB	pfam_CarbesteraseB,pfam_AB_hydrolase_3,prints_Neuroligin	-	no_errors	NLGN4X	HGNC	ENSG00000146938				28	0	0	21	5	19.2308
AR	0	genome.wustl.edu	37	X	66937333	66937333	+	Silent	SNP	A	A	G			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	X	66937333	66937333	A	G	SNP	AR	ENST00000374690	human	ensembl	74_37	+1	known	silent	c.2187	p.L729	0.996	superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Nucl_hrmn_rcpt_lig-bd_core	pfam_Andrgn_rcpt,pfam_Znf_hrmn_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Andrgn_rcpt,prints_Znf_hrmn_rcpt	-	no_errors	AR	HGNC	ENSG00000169083				63	0	0	43	16	27.1186
PJA1	0	genome.wustl.edu	37	X	68381384	68381384	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	X	68381384	68381384	A	T	SNP	PJA1	ENST00000361478	human	ensembl	74_37	-1	known	missense	c.1698	p.N566K	0.982	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	PJA1	HGNC	ENSG00000181191				134	0	0	107	11	9.32203
FAM155B	0	genome.wustl.edu	37	X	68749653	68749653	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	X	68749653	68749653	C	T	SNP	FAM155B	ENST00000252338	human	ensembl	74_37	+1	known	missense	c.1273	p.R425C	0.973	NULL	NULL	-	no_errors	FAM155B	HGNC	ENSG00000130054				128	0	0	83	10	10.7527
IGBP1	0	genome.wustl.edu	37	X	69385717	69385717	+	Silent	SNP	A	A	G			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	X	69385717	69385717	A	G	SNP	IGBP1	ENST00000342206	human	ensembl	74_37	+1	known	silent	c.906	p.E302	0.828	pfam_TAP42-like	pfam_TAP42-like	-	no_errors	IGBP1	HGNC	ENSG00000089289				45	0	0	21	9	30
ARR3	0	genome.wustl.edu	37	X	69496058	69496058	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	X	69496058	69496058	A	G	SNP	ARR3	ENST00000307959	human	ensembl	74_37	+1	known	missense	c.272	p.Q91R	0.000	pfam_Arrestin-like_N,superfamily_Ig_E-set	pfam_Arrestin-like_N,pfam_Arrestin_C-like,superfamily_Ig_E-set,prints_Arrestin	-	no_errors	ARR3	HGNC	ENSG00000120500				76	0	0	45	9	16.6667
DLG3	0	genome.wustl.edu	37	X	69712027	69712027	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	X	69712027	69712027	G	T	SNP	DLG3	ENST00000194900	human	ensembl	74_37	+1	known	missense	c.1645	p.D549Y	1.000	pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pirsf_M-assoc_guanylate_kinase,pfscan_SH3_domain	pfam_GK/Ca_channel_bsu,pfam_PDZ,pfam_PDZ_assoc,pfam_MAGUK_PEST_N,pfam_SH3_domain,pfam_SH3_2,superfamily_P-loop_NTPase,superfamily_SH3_domain,superfamily_PDZ,smart_PDZ,smart_SH3_domain,smart_GK/Ca_channel_bsu,pirsf_M-assoc_guanylate_kinase,pfscan_PDZ,pfscan_SH3_domain,pfscan_Guanylate_kin-like	-	no_errors	DLG3	HGNC	ENSG00000082458				59	0	0	25	7	21.875
NLGN3	0	genome.wustl.edu	37	X	70367840	70367840	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	X	70367840	70367840	G	A	SNP	NLGN3	ENST00000358741	human	ensembl	74_37	+1	known	missense	c.241	p.E81K	1.000	pfam_CarbesteraseB	pfam_CarbesteraseB,pfam_AB_hydrolase_3,prints_Neuroligin	-	no_errors	NLGN3	HGNC	ENSG00000196338				48	0	0	45	8	15.0943
PHKA1	0	genome.wustl.edu	37	X	71813009	71813009	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	X	71813009	71813009	G	A	SNP	PHKA1	ENST00000373539	human	ensembl	74_37	-1	known	missense	c.3239	p.A1080V	1.000	NULL	pfam_Glyco_hydro_15,superfamily_6-hairpin_glycosidase-like	-	no_errors	PHKA1	HGNC	ENSG00000067177				263	0	0	163	42	20.4878
ATRX	0	genome.wustl.edu	37	X	76937945	76937945	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	X	76937945	76937945	C	T	SNP	ATRX	ENST00000373344	human	ensembl	74_37	-1	known	missense	c.2803	p.E935K	0.001	NULL	pfam_SNF2_N,pfam_Helicase_C,superfamily_P-loop_NTPase,superfamily_Znf_FYVE_PHD,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	ATRX	HGNC	ENSG00000085224				362	0	0	202	36	15.1261
LPAR4	0	genome.wustl.edu	37	X	78010323	78010323	+	RNA	SNP	G	G	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	X	78010323	78010323	G	A	SNP	LPAR4	ENST00000607964	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.971	-	-	-	no_errors	LPAR4	HGNC	ENSG00000147145				73	0	0	30	13	30.2326
FAM9A	0	genome.wustl.edu	37	X	8767015	8767015	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	X	8767015	8767015	T	C	SNP	FAM9A	ENST00000381003	human	ensembl	74_37	-1	known	missense	c.212	p.K71R	0.000	NULL	NULL	-	no_errors	FAM9A	HGNC	ENSG00000183304				98	0	0	52	12	18.75
RPA4	0	genome.wustl.edu	37	X	96139888	96139888	+	Silent	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	X	96139888	96139888	C	T	SNP	RPA4	ENST00000373040	human	ensembl	74_37	+1	known	silent	c.579	p.N193	0.000	pfam_RPA_C,pirsf_RPA32	pfam_RPA_C,pfam_NA-bd_OB_tRNA,superfamily_NA-bd_OB-fold,pirsf_RPA32	-	no_errors	RPA4	HGNC	ENSG00000204086				204	0	0	122	29	19.2053
SRPX2	0	genome.wustl.edu	37	X	99924335	99924335	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	X	99924335	99924335	C	T	SNP	SRPX2	ENST00000373004	human	ensembl	74_37	+1	known	nonsense	c.1186	p.Q396*	0.997	NULL	pfam_Hyalin,pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,superfamily_Thioredoxin-like_fold,smart_Sushi_SCR_CCP,pfscan_Hyalin,pfscan_Sushi_SCR_CCP	-	no_errors	SRPX2	HGNC	ENSG00000102359				48	0	0	30	9	23.0769
SASS6	0	genome.wustl.edu	37	1	100588802	100588802	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	1	100588802	100588802	A	-	DEL	SASS6	ENST00000287482	human	ensembl	74_37	-1	known	frame_shift_del	c.170	p.L57fs	1.000	NULL	NULL	-	no_errors	SASS6	HGNC	ENSG00000156876				57	0	0	26	6	18.75
ENSG00000226849	0	genome.wustl.edu	37	1	11132250	11132251	+	RNA	INS	-	-	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	1	11132250	11132251	-	A	INS	ENSG00000226849	ENST00000452378	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	RP4-635E18.7	Clone_based_vega_gene	ENSG00000226849				117	1	0.847458	89	12	11.8812
ENSG00000226849	0	genome.wustl.edu	37	1	11132251	11132251	+	RNA	DEL	A	A	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	1	11132251	11132251	A	-	DEL	ENSG00000226849	ENST00000452378	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RP4-635E18.7	Clone_based_vega_gene	ENSG00000226849				118	0	0	90	11	10.8911
DENND2D	0	genome.wustl.edu	37	1	111730237	111730238	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	1	111730237	111730238	-	T	INS	DENND2D	ENST00000357640	human	ensembl	74_37	-1	known	frame_shift_ins	c.1406_1405	p.T469fs	1.000:0.994	NULL	pfam_DENN_dom,pfam_uDENN_dom,pfam_dDENN_dom,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom	-	no_errors	DENND2D	HGNC	ENSG00000162777				69	0	0	47	12	20.339
CASQ2	0	genome.wustl.edu	37	1	116243912	116243913	+	In_Frame_Ins	INS	-	-	ATC			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	1	116243912	116243913	-	ATC	INS	CASQ2	ENST00000261448	human	ensembl	74_37	-1	known	in_frame_ins	c.1150_1149	p.383in_frame_insD	0.000:0.000	NULL	pfam_Calsequestrin,superfamily_Thioredoxin-like_fold,prints_Calsequestrin	-	no_errors	CASQ2	HGNC	ENSG00000118729				66	0	0	48	10	17.2414
ANKRD34A	0	genome.wustl.edu	37	1	145473989	145473989	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	1	145473989	145473989	C	-	DEL	ANKRD34A	ENST00000323397	human	ensembl	74_37	+1	known	frame_shift_del	c.661	p.D223fs	0.999	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD34A	HGNC	ENSG00000181039				264	0	0	188	32	14.5455
BCL9	0	genome.wustl.edu	37	1	147092681	147092681	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	1	147092681	147092681	C	-	DEL	BCL9	ENST00000234739	human	ensembl	74_37	+1	known	frame_shift_del	c.2720	p.P909fs	1.000	NULL	pfam_BCL9_beta-catenin-bd_dom	-	no_errors	BCL9	HGNC	ENSG00000116128				221	0	0	139	20	12.5786
RPRD2	0	genome.wustl.edu	37	1	150337344	150337344	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	1	150337344	150337344	A	-	DEL	RPRD2	ENST00000369068	human	ensembl	74_37	+1	known	frame_shift_del	c.154	p.K53fs	1.000	superfamily_ENTH_VHS,smart_CID_dom	pfam_RNA_pol_II-bd,superfamily_ENTH_VHS,superfamily_Ricin_B_lectin,smart_CID_dom	-	no_errors	RPRD2	HGNC	ENSG00000163125				75	0	0	43	7	14
ZNF687	0	genome.wustl.edu	37	1	151259629	151259631	+	In_Frame_Del	DEL	GAT	GAT	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	GAT	GAT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	1	151259629	151259631	GAT	-	DEL	ZNF687	ENST00000324048	human	ensembl	74_37	+1	known	in_frame_del	c.862_864	p.D290in_frame_del	0.247:0.170:0.087	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF687	HGNC	ENSG00000143373				151	0	0	97	18	15.6522
LINGO4	0	genome.wustl.edu	37	1	151774033	151774033	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	1	151774033	151774033	G	-	DEL	LINGO4	ENST00000368820	human	ensembl	74_37	-1	known	frame_shift_del	c.1148	p.P383fs	1.000	smart_Cys-rich_flank_reg_C	pfam_Leu-rich_rpt,pfam_Ig_I-set,pfam_Ig_V-set,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	LINGO4	HGNC	ENSG00000213171				84	0	0	64	10	13.5135
LCE1F	0	genome.wustl.edu	37	1	152748934	152748934	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	1	152748934	152748934	C	-	DEL	LCE1F	ENST00000334371	human	ensembl	74_37	+1	known	frame_shift_del	c.87	p.P31fs	0.945	NULL	NULL	-	no_errors	LCE1F	HGNC	ENSG00000240386				173	0	0	144	27	15.7895
NUP210L	0	genome.wustl.edu	37	1	154067526	154067526	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	1	154067526	154067526	A	-	DEL	NUP210L	ENST00000368559	human	ensembl	74_37	-1	known	frame_shift_del	c.2072	p.L691fs	0.995	NULL	pfam_Big_2,superfamily_Invasin/intimin_cell_adhesion,smart_Big_2	-	no_errors	NUP210L	HGNC	ENSG00000143552				90	0	0	50	13	20.6349
UBE2Q1	0	genome.wustl.edu	37	1	154530751	154530752	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	1	154530751	154530752	-	G	INS	UBE2Q1	ENST00000292211	human	ensembl	74_37	-1	known	frame_shift_ins	c.279_278	p.R94fs	0.000:0.001	superfamily_UBQ-conjugating_enzyme/RWD	pfam_UBQ-conjugat_E2,superfamily_UBQ-conjugating_enzyme/RWD,pfscan_UBQ-conjugat_E2	-	no_errors	UBE2Q1	HGNC	ENSG00000160714				34	0	0	31	2	6.06061
TRIM46	0	genome.wustl.edu	37	1	155148062	155148062	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	1	155148062	155148062	C	-	DEL	TRIM46	ENST00000334634	human	ensembl	74_37	+1	known	frame_shift_del	c.264	p.R90fs	1.000	smart_Znf_RING	pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_Fibronectin_type3,superfamily_ConA-like_lec_gl_sf,smart_Znf_RING,smart_Znf_B-box,pfscan_B30.2/SPRY,pfscan_Fibronectin_type3,pfscan_Znf_B-box	-	no_errors	TRIM46	HGNC	ENSG00000163462				168	0	0	129	13	9.15493
TMEM79	0	genome.wustl.edu	37	1	156255783	156255783	+	RNA	DEL	G	G	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	1	156255783	156255783	G	-	DEL	TMEM79	ENST00000495881	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	TMEM79	HGNC	ENSG00000163472				317	0	0	218	32	12.8
ARHGEF11	0	genome.wustl.edu	37	1	156905647	156905647	+	RNA	DEL	C	C	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	1	156905647	156905647	C	-	DEL	ARHGEF11	ENST00000487682	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.170	-	-	-	no_errors	ARHGEF11	HGNC	ENSG00000132694				10	0	0	10	5	33.3333
GORAB	0	genome.wustl.edu	37	1	170511699	170511699	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	1	170511699	170511699	A	-	DEL	GORAB	ENST00000367763	human	ensembl	74_37	+1	known	frame_shift_del	c.562	p.A190fs	1.000	pfam_Transcript_act	pfam_Transcript_act	-	no_errors	GORAB	HGNC	ENSG00000120370				336	0	0	201	31	13.3621
CACNA1E	0	genome.wustl.edu	37	1	181680101	181680102	+	Frame_Shift_Ins	INS	-	-	AG			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	1	181680101	181680102	-	AG	INS	CACNA1E	ENST00000367573	human	ensembl	74_37	+1	known	frame_shift_ins	c.1067_1068	p.E360fs	1.000:1.000	prints_VDCCAlpha1	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,pfscan_EF_hand_dom,prints_VDCCAlpha1,prints_VDCC_R_a1su	-	no_errors	CACNA1E	HGNC	ENSG00000198216				139	0	0	100	21	17.3554
ENSG00000230260	0	genome.wustl.edu	37	1	197411573	197411573	+	RNA	DEL	A	A	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	1	197411573	197411573	A	-	DEL	ENSG00000230260	ENST00000422250	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	RP11-75C23.1	Clone_based_vega_gene	ENSG00000230260				27	0	0	21	4	16
TMEM81	0	genome.wustl.edu	37	1	205053328	205053329	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	1	205053328	205053329	-	C	INS	TMEM81	ENST00000367167	human	ensembl	74_37	-1	known	frame_shift_ins	c.121_120	p.K40fs	0.532:0.826	NULL	pfscan_Ig-like_dom	-	no_errors	TMEM81	HGNC	ENSG00000174529				99	0	0	86	25	22.5225
EIF2D	0	genome.wustl.edu	37	1	206773636	206773637	+	Frame_Shift_Ins	INS	-	-	TTATGTCC			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	1	206773636	206773637	-	TTATGTCC	INS	EIF2D	ENST00000271764	human	ensembl	74_37	-1	known	frame_shift_ins	c.929_928	p.K310fs	1.000:1.000	NULL	pfam_TIF_SUI1,superfamily_TIF_SUI1,superfamily_SWIB_MDM2_domain,superfamily_PUA-like_domain,smart_PUA,pfscan_PUA,pfscan_TIF_SUI1	-	no_errors	EIF2D	HGNC	ENSG00000143486				133	0	0	105	11	9.48276
CR2	0	genome.wustl.edu	37	1	207641844	207641844	+	RNA	DEL	T	T	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	1	207641844	207641844	T	-	DEL	CR2	ENST00000485707	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.038	-	-	-	no_errors	CR2	HGNC	ENSG00000117322				89	0	0	49	13	20.9677
MIA3	0	genome.wustl.edu	37	1	222802778	222802779	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	1	222802778	222802779	-	A	INS	MIA3	ENST00000344441	human	ensembl	74_37	+1	known	frame_shift_ins	c.2216_2217	p.R741fs	0.961:0.021	NULL	pfam_SH3_2,superfamily_SH3_domain	-	no_errors	MIA3	HGNC	ENSG00000154305				136	0	0	76	21	21.6495
LOC100130331	0	genome.wustl.edu	37	1	238090207	238090207	+	RNA	DEL	C	C	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	1	238090207	238090207	C	-	DEL	LOC100130331	ENST00000450451	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	RP11-193H5.1	Clone_based_vega_gene	ENSG00000237250				29	0	0	15	6	28.5714
CHRM3	0	genome.wustl.edu	37	1	240072444	240072445	+	Frame_Shift_Del	DEL	AA	AA	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	1	240072444	240072445	AA	-	DEL	CHRM3	ENST00000255380	human	ensembl	74_37	+1	known	frame_shift_del	c.1693_1694	p.K567fs	1.000:0.988	NULL	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_Musac_Ach_M3_rcpt,prints_Musac_Ach_rcpt,prints_GPCR_Rhodpsn	-	no_errors	CHRM3	HGNC	ENSG00000133019				120	0	0	72	22	23.4043
IL22RA1	0	genome.wustl.edu	37	1	24447935	24447935	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	1	24447935	24447935	G	-	DEL	IL22RA1	ENST00000270800	human	ensembl	74_37	-1	novel	frame_shift_del	c.1085	p.P362fs	0.019	NULL	pfam_Interferon_alpha/beta_rcpt_bsu,superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	IL22RA1	HGNC	ENSG00000142677				305	0	0	172	46	21.1009
GRHL3	0	genome.wustl.edu	37	1	24664148	24664149	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	1	24664148	24664149	-	C	INS	GRHL3	ENST00000350501	human	ensembl	74_37	+1	known	frame_shift_ins	c.709_710	p.K239fs	0.999:1.000	pfam_CP2	pfam_CP2,superfamily_C2_dom	-	no_errors	GRHL3	HGNC	ENSG00000158055				81	0	0	56	10	15.1515
CATSPER4	0	genome.wustl.edu	37	1	26529010	26529010	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	1	26529010	26529010	A	-	DEL	CATSPER4	ENST00000456354	human	ensembl	74_37	+1	known	frame_shift_del	c.1396	p.K467fs	0.001	NULL	pfam_Ion_trans_dom,pfam_PKD1_2_channel	-	no_errors	CATSPER4	HGNC	ENSG00000188782				25	0	0	12	2	14.2857
ARID1A	0	genome.wustl.edu	37	1	27057708	27057709	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	1	27057708	27057709	-	A	INS	ARID1A	ENST00000324856	human	ensembl	74_37	+1	known	frame_shift_ins	c.1416_1417	p.Q472fs	1.000:1.000	NULL	pfam_DUF3518,pfam_ARID/BRIGHT_DNA-bd,superfamily_ARID/BRIGHT_DNA-bd,superfamily_ARM-type_fold,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID1A	HGNC	ENSG00000117713				614	0	0	393	95	19.4672
WDTC1	0	genome.wustl.edu	37	1	27621108	27621108	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	1	27621108	27621108	G	-	DEL	WDTC1	ENST00000319394	human	ensembl	74_37	+1	known	frame_shift_del	c.861	p.E290fs	1.000	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,smart_TPR_repeat,pfscan_TPR-contain_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDTC1	HGNC	ENSG00000142784				77	0	0	48	13	21.3115
MARCKSL1	0	genome.wustl.edu	37	1	32800540	32800540	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	1	32800540	32800540	G	-	DEL	MARCKSL1	ENST00000329421	human	ensembl	74_37	-1	known	frame_shift_del	c.246	p.K83fs	1.000	pfam_MARCKS	pfam_MARCKS,prints_MARCKS	-	no_errors	MARCKSL1	HGNC	ENSG00000175130				172	0	0	105	14	11.7647
GJB5	0	genome.wustl.edu	37	1	35223698	35223699	+	In_Frame_Ins	INS	-	-	TCC			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	1	35223698	35223699	-	TCC	INS	GJB5	ENST00000338513	human	ensembl	74_37	+1	known	in_frame_ins	c.767_768	p.259in_frame_insP	0.002:0.004	prints_Connexin311	pfam_Connexin_N,pfam_Connexin_CCC,smart_Connexin_N,prints_Connexin,prints_Connexin311	-	no_errors	GJB5	HGNC	ENSG00000189280				135	0	0	71	20	21.978
ZMYM4	0	genome.wustl.edu	37	1	35836080	35836080	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	1	35836080	35836080	A	-	DEL	ZMYM4	ENST00000314607	human	ensembl	74_37	+1	known	frame_shift_del	c.1033	p.I347fs	1.000	pfam_Znf_MYM,smart_TRASH_dom	pfam_DUF3504,pfam_Znf_MYM,smart_TRASH_dom	-	no_errors	ZMYM4	HGNC	ENSG00000146463				186	0	0	108	16	12.9032
MAP7D1	0	genome.wustl.edu	37	1	36636626	36636626	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	1	36636626	36636626	C	-	DEL	MAP7D1	ENST00000373151	human	ensembl	74_37	+1	known	frame_shift_del	c.101	p.P36fs	0.090	NULL	pfam_MAP7	-	no_errors	MAP7D1	HGNC	ENSG00000116871				226	0	0	135	17	11.1842
RNF220	0	genome.wustl.edu	37	1	45097943	45097943	+	RNA	DEL	G	G	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	1	45097943	45097943	G	-	DEL	RNF220	ENST00000475378	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.273	-	-	-	no_errors	RNF220	HGNC	ENSG00000187147				53	0	0	29	7	19.4444
ZCCHC11	0	genome.wustl.edu	37	1	52991653	52991653	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	1	52991653	52991653	T	-	DEL	ZCCHC11	ENST00000257177	human	ensembl	74_37	-1	known	frame_shift_del	c.300	p.K100fs	0.628	NULL	pfam_PAP_assoc,pfam_Znf_CCHC,pfam_Nucleotidyltransferase,superfamily_Znf_CCHC,smart_Znf_CCHC,pfscan_Znf_CCHC	-	no_errors	ZCCHC11	HGNC	ENSG00000134744				300	1	0.332226	210	46	17.9688
USP24	0	genome.wustl.edu	37	1	55560928	55560929	+	Frame_Shift_Del	DEL	AG	AG	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	1	55560928	55560929	AG	-	DEL	USP24	ENST00000407756	human	ensembl	74_37	-1	known	frame_shift_del	c.5723_5722	p.L1908fs	1.000:0.999	superfamily_ARM-type_fold	pfam_Peptidase_C19/C67,superfamily_UBA-like,superfamily_ARM-type_fold,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Peptidase_C19/C67	-	no_errors	USP24	HGNC	ENSG00000162402				49	0	0	18	5	21.7391
RPL22	0	genome.wustl.edu	37	1	6257785	6257785	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	1	6257785	6257785	T	-	DEL	RPL22	ENST00000234875	human	ensembl	74_37	-1	known	frame_shift_del	c.44	p.K15fs	1.000	pfam_Ribosomal_L22e	pfam_Ribosomal_L22e	-	no_errors	RPL22	HGNC	ENSG00000116251				71	0	0	52	16	23.5294
MIER1	0	genome.wustl.edu	37	1	67425495	67425495	+	RNA	DEL	T	T	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	1	67425495	67425495	T	-	DEL	MIER1	ENST00000493357	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	MIER1	HGNC	ENSG00000198160				31	0	0	26	2	7.14286
GNG12	0	genome.wustl.edu	37	1	68171151	68171151	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	1	68171151	68171151	T	-	DEL	GNG12	ENST00000370982	human	ensembl	74_37	-1	known	frame_shift_del	c.202	p.T68fs	1.000	smart_G-protein_gamma-like_dom,pfscan_G-protein_gamma-like_dom	pfam_G-protein_gamma-like_dom,superfamily_G-protein_gamma-like_dom,smart_G-protein_gamma-like_dom,pfscan_G-protein_gamma-like_dom,prints_Gprotein-gamma	-	no_errors	GNG12	HGNC	ENSG00000172380				178	0	0	123	17	12.1429
PTGER3	0	genome.wustl.edu	37	1	71331414	71331414	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	1	71331414	71331414	G	-	DEL	PTGER3	ENST00000497146	human	ensembl	74_37	-1	known	frame_shift_del	c.1207	p.H403fs	0.000	NULL	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfam_7TM_GPCR_serpentine_rcpt_Srbc,pfscan_GPCR_Rhodpsn_7TM,prints_Prostglndn_EP3_rcpt,prints_Prostanoid_rcpt,prints_EP3_rcpt_2,prints_Prostglndn_DP_rcpt,prints_GPCR_Rhodpsn,prints_Thbox_rcpt	-	no_errors	PTGER3	HGNC	ENSG00000050628				210	0	0	118	32	21.3333
USP33	0	genome.wustl.edu	37	1	78205025	78205026	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	1	78205025	78205026	-	A	INS	USP33	ENST00000357428	human	ensembl	74_37	-1	known	frame_shift_ins	c.369_368	p.L123fs	1.000:1.000	pfscan_Znf_UBP	pfam_Peptidase_C19/C67,pfam_Pept_C19_DUSP,pfam_Znf_UBP,smart_Znf_UBP,smart_Pept_C19_DUSP,pfscan_Znf_UBP,pfscan_Peptidase_C19/C67	-	no_errors	USP33	HGNC	ENSG00000077254				310	0	0	203	44	17.8138
BCL10	0	genome.wustl.edu	37	1	85736511	85736511	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	1	85736511	85736511	T	-	DEL	BCL10	ENST00000370580	human	ensembl	74_37	-1	known	frame_shift_del	c.136	p.I46fs	1.000	pfam_CARD,superfamily_DEATH-like_dom,pfscan_CARD	pfam_CARD,superfamily_DEATH-like_dom,pfscan_CARD	-	no_errors	BCL10	HGNC	ENSG00000142867				198	1	0.502513	125	29	18.8312
ODF2L	0	genome.wustl.edu	37	1	86826142	86826142	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	1	86826142	86826142	T	-	DEL	ODF2L	ENST00000317336	human	ensembl	74_37	-1	known	frame_shift_del	c.1221	p.K407fs	0.038	NULL	NULL	-	no_errors	ODF2L	HGNC	ENSG00000122417				98	0	0	32	13	28.8889
CDC7	0	genome.wustl.edu	37	1	91967357	91967357	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	1	91967357	91967357	A	-	DEL	CDC7	ENST00000234626	human	ensembl	74_37	+1	known	frame_shift_del	c.84	p.N31fs	0.083	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	CDC7	HGNC	ENSG00000097046				247	0	0	159	27	14.5161
CLSTN1	0	genome.wustl.edu	37	1	9809959	9809959	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	1	9809959	9809959	T	-	DEL	CLSTN1	ENST00000377298	human	ensembl	74_37	-1	known	frame_shift_del	c.662	p.N221fs	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	pfam_Cadherin,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	CLSTN1	HGNC	ENSG00000171603				73	0	0	53	16	23.1884
NOLC1	0	genome.wustl.edu	37	10	103919299	103919299	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	10	103919299	103919299	A	-	DEL	NOLC1	ENST00000405356	human	ensembl	74_37	+1	known	frame_shift_del	c.863	p.K290fs	0.998	NULL	pfam_SRP40_C,pfscan_LisH_dimerisation	-	no_errors	NOLC1	HGNC	ENSG00000166197				110	0	0	72	27	27.2727
CACUL1	0	genome.wustl.edu	37	10	120514110	120514110	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	10	120514110	120514110	C	-	DEL	CACUL1	ENST00000369151	human	ensembl	74_37	-1	known	frame_shift_del	c.165	p.Q56fs	0.711	NULL	pfam_Cullin_N,superfamily_Cullin_repeat-like_dom	-	no_errors	CACUL1	HGNC	ENSG00000151893				38	0	0	12	6	33.3333
NMT2	0	genome.wustl.edu	37	10	15183500	15183500	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	10	15183500	15183500	T	-	DEL	NMT2	ENST00000378165	human	ensembl	74_37	-1	known	frame_shift_del	c.167	p.K56fs	1.000	pirsf_MyristoylCoA_TrFase	pfam_MyristoylCoA_TrFase_C,pfam_MyristoylCoA_TrFase_N,superfamily_Acyl_CoA_acyltransferase,pirsf_MyristoylCoA_TrFase	-	no_errors	NMT2	HGNC	ENSG00000152465				105	0	0	61	11	15.2778
101928757	0	genome.wustl.edu	37	10	17865318	17865318	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	10	17865318	17865318	A	-	DEL	101928757	ENST00000457317	human	ensembl	74_37	+1	known	frame_shift_del	c.307	p.N104fs	1.000	pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	pfam_C-type_lectin,pfam_FN_type2_col-bd,pfam_Ricin_B_lectin,pfam_Herpes_UL45-like,superfamily_Ricin_B_lectin,superfamily_C-type_lectin_fold,superfamily_Kringle-like,smart_Ricin_B_lectin,smart_FN_type2_col-bd,smart_C-type_lectin,pfscan_FN_type2_col-bd,pfscan_C-type_lectin,pfscan_Ricin_B_lectin,prints_AntifreezeII	-	no_errors	MRC1L1	Clone_based_vega_gene	ENSG00000183748				390	0	0	327	25	7.10227
ANKRD26	0	genome.wustl.edu	37	10	27322259	27322259	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	10	27322259	27322259	T	-	DEL	ANKRD26	ENST00000436985	human	ensembl	74_37	-1	known	frame_shift_del	c.3750	p.K1250fs	0.005	NULL	pfam_DUF3496,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,superfamily_Polyketide_synth_docking,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	ANKRD26	HGNC	ENSG00000107890				137	0	0	104	12	10.3448
DIP2C	0	genome.wustl.edu	37	10	412273	412274	+	Frame_Shift_Ins	INS	-	-	CA			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	10	412273	412274	-	CA	INS	DIP2C	ENST00000280886	human	ensembl	74_37	-1	known	frame_shift_ins	c.2210_2209	p.A737fs	0.996:0.993	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig,pfam_DMAP1-bd	-	no_errors	DIP2C	HGNC	ENSG00000151240				66	0	0	50	9	15.2542
ZFAND4	0	genome.wustl.edu	37	10	46121425	46121425	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	10	46121425	46121425	G	-	DEL	ZFAND4	ENST00000344646	human	ensembl	74_37	-1	known	frame_shift_del	c.1846	p.Q616fs	0.965	NULL	pfam_Ubiquitin_dom,pfam_Znf_AN1,smart_Ubiquitin_dom,smart_Znf_AN1,pfscan_Znf_AN1,pfscan_Ubiquitin_supergroup,prints_Ubiquitin	-	no_errors	ZFAND4	HGNC	ENSG00000172671				151	0	0	111	42	27.451
NET1	0	genome.wustl.edu	37	10	5495005	5495005	+	RNA	DEL	T	T	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	10	5495005	5495005	T	-	DEL	NET1	ENST00000465087	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	NET1	HGNC	ENSG00000173848				40	0	0	11	5	31.25
FAM208B	0	genome.wustl.edu	37	10	5782141	5782142	+	Frame_Shift_Del	DEL	GA	GA	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	GA	GA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	10	5782141	5782142	GA	-	DEL	FAM208B	ENST00000328090	human	ensembl	74_37	+1	known	frame_shift_del	c.2008_2009	p.E672fs	0.466:0.514	pfam_DUF3715	pfam_DUF3715,pfam_DUF3699	-	no_errors	FAM208B	HGNC	ENSG00000108021				316	0	0	246	72	22.6415
RTKN2	0	genome.wustl.edu	37	10	63958149	63958149	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	10	63958149	63958149	T	-	DEL	RTKN2	ENST00000373789	human	ensembl	74_37	-1	known	frame_shift_del	c.1348	p.I450fs	1.000	NULL	pfam_Pleckstrin_homology,superfamily_HR1_rho-bd,smart_HR1_rho-bd,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	RTKN2	HGNC	ENSG00000182010				169	1	0.588235	109	16	12.8
HERC4	0	genome.wustl.edu	37	10	69716603	69716604	+	RNA	DEL	AA	AA	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	10	69716603	69716604	AA	-	DEL	HERC4	ENST00000480158	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	HERC4	HGNC	ENSG00000148634				73	0	0	34	21	38.1818
H2AFY2	0	genome.wustl.edu	37	10	71851665	71851665	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	10	71851665	71851665	G	-	DEL	H2AFY2	ENST00000373255	human	ensembl	74_37	+1	known	frame_shift_del	c.432	p.K147fs	1.000	pirsf_Core_histone_macro-H2A	pfam_Macro_dom,pfam_Histone_core_D,superfamily_Histone-fold,smart_Histone_H2A,smart_Macro_dom,pirsf_Core_histone_macro-H2A,pfscan_Macro_dom,prints_Histone_H2A	-	no_errors	H2AFY2	HGNC	ENSG00000099284				101	0	0	75	11	12.7907
ZSWIM8-AS1	0	genome.wustl.edu	37	10	75556794	75556794	+	RNA	DEL	G	G	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	10	75556794	75556794	G	-	DEL	ZSWIM8-AS1	ENST00000456638	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	ZSWIM8-AS1	HGNC	ENSG00000272589				89	0	0	50	16	24.2424
ADK	0	genome.wustl.edu	37	10	76153932	76153932	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	10	76153932	76153932	T	-	DEL	ADK	ENST00000286621	human	ensembl	74_37	+1	known	frame_shift_del	c.307	p.F104fs	0.997	pfam_PfkB_dom,prints_Adenokinase	pfam_PfkB_dom,prints_Adenokinase	-	no_errors	ADK	HGNC	ENSG00000156110				315	0	0	204	15	6.84932
ENSG00000228748	0	genome.wustl.edu	37	10	79552313	79552313	+	RNA	DEL	C	C	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	10	79552313	79552313	C	-	DEL	ENSG00000228748	ENST00000434097	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.046	-	-	-	no_errors	RP13-39P12.3	Clone_based_vega_gene	ENSG00000228748				100	0	0	84	14	14.2857
LARP4B	0	genome.wustl.edu	37	10	890939	890939	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	10	890939	890939	T	-	DEL	LARP4B	ENST00000316157	human	ensembl	74_37	-1	known	frame_shift_del	c.487	p.T163fs	1.000	pfam_Lupus_La_RNA-bd,smart_Lupus_La_RNA-bd,pfscan_Lupus_La_RNA-bd	pfam_Lupus_La_RNA-bd,smart_Lupus_La_RNA-bd,pfscan_Lupus_La_RNA-bd	-	no_errors	LARP4B	HGNC	ENSG00000107929				165	0	0	139	23	14.1975
STAMBPL1	0	genome.wustl.edu	37	10	90682145	90682146	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	10	90682145	90682146	-	A	INS	STAMBPL1	ENST00000371927	human	ensembl	74_37	+1	known	frame_shift_ins	c.1206_1207	p.G406fs	1.000:1.000	NULL	pfam_JAB_MPN_dom,smart_JAB_MPN_dom	-	no_errors	STAMBPL1	HGNC	ENSG00000138134				161	0	0	108	28	20.5882
NCAM1	0	genome.wustl.edu	37	11	113146186	113146187	+	RNA	DEL	AC	AC	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	AC	AC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	11	113146186	113146187	AC	-	DEL	NCAM1	ENST00000397957	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000:0.002	-	-	-	no_errors	NCAM1	HGNC	ENSG00000149294				20	0	0	4	4	50
CSNK2A3	0	genome.wustl.edu	37	11	11373969	11373969	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	11	11373969	11373969	A	-	DEL	CSNK2A3	ENST00000528848	human	ensembl	74_37	-1	novel	frame_shift_del	c.698	p.F233fs	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Aminoglycoside_PTrfase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	CSNK2A3	HGNC	ENSG00000254598				246	0	0	228	20	8.06452
SORL1	0	genome.wustl.edu	37	11	121475905	121475905	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	11	121475905	121475905	A	-	DEL	SORL1	ENST00000260197	human	ensembl	74_37	+1	known	frame_shift_del	c.4735	p.M1581fs	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_LDrepeatLR_classA_rpt,pfam_Fibronectin_type3,pfam_LDLR_classB_rpt,superfamily_Fibronectin_type3,superfamily_LDrepeatLR_classA_rpt,smart_VPS10,smart_LDLR_classB_rpt,smart_LDrepeatLR_classA_rpt,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	SORL1	HGNC	ENSG00000137642				272	1	0.3663	216	39	15.2941
ROBO4	0	genome.wustl.edu	37	11	124757029	124757029	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	11	124757029	124757029	G	-	DEL	ROBO4	ENST00000306534	human	ensembl	74_37	-1	known	frame_shift_del	c.2279	p.P760fs	0.978	NULL	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	ROBO4	HGNC	ENSG00000154133				109	0	0	114	14	10.9375
SRPR	0	genome.wustl.edu	37	11	126137087	126137087	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	11	126137087	126137087	T	-	DEL	SRPR	ENST00000332118	human	ensembl	74_37	-1	known	frame_shift_del	c.509	p.K170fs	0.991	pfam_Sig_recog_particle_rcpt_asu_N	pfam_Sig_recog_particle_rcpt_asu_N,pfam_SRP54_GTPase_dom,pfam_ArgK,pfam_CobQ/CobB/MinD/ParA_Nub-bd_dom,pfam_Signal_recog_particl_SRP54_hlx,superfamily_Longin-like_dom,superfamily_P-loop_NTPase,superfamily_Signal_recog_particl_SRP54_hlx,smart_Signal_recog_particl_SRP54_hlx,smart_AAA+_ATPase,smart_SRP54_GTPase_dom	-	no_errors	SRPR	HGNC	ENSG00000182934				558	2	0.357143	467	62	11.7202
ARHGAP32	0	genome.wustl.edu	37	11	128851757	128851757	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	11	128851757	128851757	T	-	DEL	ARHGAP32	ENST00000310343	human	ensembl	74_37	-1	known	frame_shift_del	c.1559	p.N520fs	1.000	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	pfam_RhoGAP_dom,pfam_SH3_domain,pfam_SH3_2,pfam_Phox,superfamily_Rho_GTPase_activation_prot,superfamily_SH3_domain,superfamily_Phox,smart_SH3_domain,smart_RhoGAP_dom,pfscan_SH3_domain,pfscan_RhoGAP_dom	-	no_errors	ARHGAP32	HGNC	ENSG00000134909				119	0	0	74	39	34.5133
SOX6	0	genome.wustl.edu	37	11	16339955	16339955	+	RNA	DEL	A	A	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	11	16339955	16339955	A	-	DEL	SOX6	ENST00000533658	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SOX6	HGNC	ENSG00000110693				107	0	0	103	14	11.9658
KCNA4	0	genome.wustl.edu	37	11	30033563	30033563	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	11	30033563	30033563	A	-	DEL	KCNA4	ENST00000328224	human	ensembl	74_37	-1	known	frame_shift_del	c.663	p.F221fs	0.902	pfam_T1-type_BTB,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv1,prints_K_chnl_volt-dep_Kv	pfam_K_chnl_volt-dep_Kv1.4_TID,pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv1.4,prints_K_chnl_volt-dep_Kv1,prints_K_chnl_volt-dep_Kv	-	no_errors	KCNA4	HGNC	ENSG00000182255				151	0	0	93	18	16.2162
B4GALNT4	0	genome.wustl.edu	37	11	375700	375700	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	11	375700	375700	G	-	DEL	B4GALNT4	ENST00000329962	human	ensembl	74_37	+1	known	frame_shift_del	c.912	p.R307fs	0.021	NULL	pfam_Chond_GalNAc,pfam_PA14,smart_PA14	-	no_errors	B4GALNT4	HGNC	ENSG00000182272				88	0	0	61	6	8.95522
AMBRA1	0	genome.wustl.edu	37	11	46568609	46568609	+	RNA	DEL	A	A	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	11	46568609	46568609	A	-	DEL	AMBRA1	ENST00000524783	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.881	-	-	-	no_errors	AMBRA1	HGNC	ENSG00000110497				66	0	0	55	8	12.6984
ARFGAP2	0	genome.wustl.edu	37	11	47196853	47196853	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	11	47196853	47196853	A	-	DEL	ARFGAP2	ENST00000524782	human	ensembl	74_37	-1	known	frame_shift_del	c.276	p.R93fs	1.000	pfam_ArfGAP,smart_ArfGAP,pfscan_ArfGAP	pfam_ArfGAP,smart_ArfGAP,pfscan_ArfGAP,prints_ArfGAP	-	no_errors	ARFGAP2	HGNC	ENSG00000149182				248	0	0	151	57	27.4038
KBTBD4	0	genome.wustl.edu	37	11	47594882	47594883	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	11	47594882	47594883	-	C	INS	KBTBD4	ENST00000430070	human	ensembl	74_37	-1	known	frame_shift_ins	c.1205_1204	p.E402fs	1.000:1.000	NULL	pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,pfscan_BTB/POZ-like	-	no_errors	KBTBD4	HGNC	ENSG00000123444				209	1	0.47619	193	24	11.0599
TRIM51	0	genome.wustl.edu	37	11	55653610	55653610	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	11	55653610	55653610	A	-	DEL	TRIM51	ENST00000449290	human	ensembl	74_37	+1	known	frame_shift_del	c.423	p.M144fs	0.001	NULL	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl_sf,smart_Znf_RING,smart_Znf_B-box,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	TRIM51	HGNC	ENSG00000124900				76	0	0	31	17	35.4167
OR1S1	0	genome.wustl.edu	37	11	57982425	57982425	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	11	57982425	57982425	C	-	DEL	OR1S1	ENST00000309433	human	ensembl	74_37	+1	known	frame_shift_del	c.209	p.M72fs	0.959	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR1S1	HGNC	ENSG00000172774				407	0	0	310	35	10.1449
FADS1	0	genome.wustl.edu	37	11	61578343	61578343	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	11	61578343	61578343	G	-	DEL	FADS1	ENST00000350997	human	ensembl	74_37	-1	known	frame_shift_del	c.795	p.A266fs	0.070	pfam_Fatty_acid_desaturase-1,pirsf_Fatty_acid/sphinglp_desaturase	pfam_Fatty_acid_desaturase-1,pfam_Cyt_B5-like_heme/steroid-bd,superfamily_Cyt_B5-like_heme/steroid-bd,pirsf_Fatty_acid/sphinglp_desaturase,pfscan_Cyt_B5-like_heme/steroid-bd,prints_Cyt_B5-like_heme/steroid-bd	-	no_errors	FADS1	HGNC	ENSG00000149485				98	0	0	77	21	21.4286
SLC22A9	0	genome.wustl.edu	37	11	63149671	63149672	+	Frame_Shift_Del	DEL	AA	AA	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	11	63149671	63149672	AA	-	DEL	SLC22A9	ENST00000279178	human	ensembl	74_37	+1	known	frame_shift_del	c.995_996	p.K335fs	0.005:0.008	pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC22A9	HGNC	ENSG00000149742				279	0	0	154	61	28.3721
MALAT1	0	genome.wustl.edu	37	11	65266552	65266552	+	RNA	DEL	G	G	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	11	65266552	65266552	G	-	DEL	MALAT1	ENST00000534336	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	MALAT1	HGNC	ENSG00000251562				176	0	0	169	16	8.64865
SNX32	0	genome.wustl.edu	37	11	65617442	65617444	+	In_Frame_Del	DEL	GAG	GAG	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	GAG	GAG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	11	65617442	65617444	GAG	-	DEL	SNX32	ENST00000308342	human	ensembl	74_37	+1	known	in_frame_del	c.193_195	p.E66in_frame_del	1.000:1.000:0.999	pfam_Phox,superfamily_Phox,pirsf_Snx5_Snx6,pfscan_Phox	pfam_Vps5_C,pfam_Phox,superfamily_Phox,pirsf_Snx5_Snx6,pfscan_Phox	-	no_errors	SNX32	HGNC	ENSG00000172803				90	0	0	71	13	15.4762
PPP1CA	0	genome.wustl.edu	37	11	67165933	67165933	+	RNA	DEL	C	C	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	11	67165933	67165933	C	-	DEL	PPP1CA	ENST00000532446	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.080	-	-	-	no_errors	PPP1CA	HGNC	ENSG00000172531				27	0	0	20	8	28.5714
CORO1B	0	genome.wustl.edu	37	11	67209168	67209169	+	Frame_Shift_Del	DEL	GG	GG	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	GG	GG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	11	67209168	67209169	GG	-	DEL	CORO1B	ENST00000545016	human	ensembl	74_37	-1	known	frame_shift_del	c.490_489	p.H164fs	0.000:0.000	NULL	pfam_DUF1899,pfam_WD40_repeat,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	CORO1B	HGNC	ENSG00000172725				22	0	0	27	6	18.1818
POLD3	0	genome.wustl.edu	37	11	74336609	74336609	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	11	74336609	74336609	A	-	DEL	POLD3	ENST00000263681	human	ensembl	74_37	+1	known	frame_shift_del	c.890	p.R300fs	0.998	pfam_DNA_polymerase_subunit_Cdc27	pfam_DNA_polymerase_subunit_Cdc27	-	no_errors	POLD3	HGNC	ENSG00000077514				61	0	0	67	13	16.25
ENSG00000254420	0	genome.wustl.edu	37	11	78154811	78154812	+	RNA	DEL	AA	AA	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	11	78154811	78154812	AA	-	DEL	ENSG00000254420	ENST00000534168	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000:0.006	-	-	-	no_errors	RP11-452H21.1	Clone_based_vega_gene	ENSG00000254420				45	0	0	27	7	20.5882
DLG2	0	genome.wustl.edu	37	11	84028016	84028016	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	11	84028016	84028016	C	-	DEL	DLG2	ENST00000280241	human	ensembl	74_37	-1	known	frame_shift_del	c.173	p.G58fs	0.956	pfam_MAGUK_PEST_N,pirsf_M-assoc_guanylate_kinase	pfam_PDZ,pfam_GK/Ca_channel_bsu,pfam_PDZ_assoc,pfam_MAGUK_PEST_N,pfam_SH3_2,pfam_SH3_domain,superfamily_P-loop_NTPase,superfamily_SH3_domain,superfamily_PDZ,smart_PDZ,smart_SH3_domain,smart_GK/Ca_channel_bsu,pirsf_M-assoc_guanylate_kinase,pfscan_PDZ,pfscan_SH3_domain,pfscan_Guanylate_kin-like	-	no_errors	DLG2	HGNC	ENSG00000150672				300	0	0	263	39	12.9139
SYTL2	0	genome.wustl.edu	37	11	85436878	85436878	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	11	85436878	85436878	T	-	DEL	SYTL2	ENST00000359152	human	ensembl	74_37	-1	known	frame_shift_del	c.2194	p.T732fs	0.002	NULL	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	-	no_errors	SYTL2	HGNC	ENSG00000137501				272	0	0	197	37	15.812
SCUBE2	0	genome.wustl.edu	37	11	9048996	9048996	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	11	9048996	9048996	G	-	DEL	SCUBE2	ENST00000457346	human	ensembl	74_37	-1	known	frame_shift_del	c.2616	p.K873fs	0.978	pfam_CUB_dom,superfamily_CUB_dom,smart_CUB_dom,pfscan_CUB_dom	pfam_Tyr-kin_ephrin_A/B_rcpt-like,pfam_EGF-like_Ca-bd_dom,pfam_EG-like_dom,pfam_CUB_dom,superfamily_CUB_dom,superfamily_Growth_fac_rcpt_N_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_CUB_dom,pfscan_CUB_dom,pfscan_EG-like_dom	-	no_errors	SCUBE2	HGNC	ENSG00000175356				93	0	0	69	8	10.3896
ANKS1B	0	genome.wustl.edu	37	12	100166682	100166682	+	RNA	DEL	C	C	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	12	100166682	100166682	C	-	DEL	ANKS1B	ENST00000552472	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.001	-	-	-	no_errors	ANKS1B	HGNC	ENSG00000185046				106	0	0	69	16	18.8235
UTP20	0	genome.wustl.edu	37	12	101680157	101680157	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	12	101680157	101680157	T	-	DEL	UTP20	ENST00000261637	human	ensembl	74_37	+1	known	frame_shift_del	c.385	p.L131fs	1.000	superfamily_ARM-type_fold	pfam_DRIM,superfamily_ARM-type_fold	-	no_errors	UTP20	HGNC	ENSG00000120800				572	0	0	423	72	14.5455
KLRK1	0	genome.wustl.edu	37	12	10532376	10532376	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	12	10532376	10532376	A	-	DEL	KLRK1	ENST00000240618	human	ensembl	74_37	-1	known	frame_shift_del	c.164	p.F55fs	0.002	pfam_Herpes_UL45-like	pfam_C-type_lectin,pfam_Herpes_UL45-like,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin,prints_AntifreezeII	-	no_errors	KLRK1	HGNC	ENSG00000213809				60	0	0	33	3	8.33333
ALKBH2	0	genome.wustl.edu	37	12	109526014	109526014	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	12	109526014	109526014	T	-	DEL	ALKBH2	ENST00000343075	human	ensembl	74_37	-1	known	frame_shift_del	c.783	p.K261fs	0.751	NULL	pfam_Oxoglu/Fe-dep_dioxygenase	-	no_errors	ALKBH2	HGNC	ENSG00000189046				209	0	0	95	47	33.0986
PPP1CC	0	genome.wustl.edu	37	12	111169781	111169781	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	12	111169781	111169781	A	-	DEL	PPP1CC	ENST00000546933	human	ensembl	74_37	-1	putative	frame_shift_del	c.8	p.L3fs	0.003	NULL	pfam_PEstase_dom,smart_Ser/Thr-sp_prot-phosphatase,prints_Ser/Thr-sp_prot-phosphatase	-	no_errors	PPP1CC	HGNC	ENSG00000186298				52	0	0	38	4	9.52381
PRKAB1	0	genome.wustl.edu	37	12	120106124	120106124	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	12	120106124	120106124	G	-	DEL	PRKAB1	ENST00000229328	human	ensembl	74_37	+1	known	frame_shift_del	c.75	p.G27fs	0.643	NULL	pfam_AMP_prot_kin_bsu_interact-dom,superfamily_Ig_E-set	-	no_errors	PRKAB1	HGNC	ENSG00000111725				49	0	0	29	8	21.6216
GPR19	0	genome.wustl.edu	37	12	12814274	12814274	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	12	12814274	12814274	T	-	DEL	GPR19	ENST00000332427	human	ensembl	74_37	-1	known	frame_shift_del	c.1109	p.N370fs	1.000	NULL	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	-	no_errors	GPR19	HGNC	ENSG00000183150				303	0	0	226	43	15.9851
ULK1	0	genome.wustl.edu	37	12	132402066	132402066	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	12	132402066	132402066	C	-	DEL	ULK1	ENST00000321867	human	ensembl	74_37	+1	known	frame_shift_del	c.2293	p.Q767fs	0.683	pirsf_Ser/Thr_kin_STPK_Ulk-1/2	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ser/Thr_kinase_C,pfam_LipoPS_kinase,pfam_RIO-like_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Ser/Thr_kin_STPK_Ulk-1/2,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	ULK1	HGNC	ENSG00000177169				31	0	0	22	4	15.3846
FOXM1	0	genome.wustl.edu	37	12	2968088	2968088	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	12	2968088	2968088	G	-	DEL	FOXM1	ENST00000342628	human	ensembl	74_37	-1	known	frame_shift_del	c.2122	p.E709fs	1.000	NULL	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXM1	HGNC	ENSG00000111206				173	0	0	91	39	30
FAM60A	0	genome.wustl.edu	37	12	31448178	31448178	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	12	31448178	31448178	T	-	DEL	FAM60A	ENST00000337682	human	ensembl	74_37	-1	known	frame_shift_del	c.218	p.N73fs	1.000	NULL	NULL	-	no_errors	FAM60A	HGNC	ENSG00000139146				71	0	0	36	27	42.8571
ALG10B	0	genome.wustl.edu	37	12	38714473	38714473	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	12	38714473	38714473	T	-	DEL	ALG10B	ENST00000308742	human	ensembl	74_37	+1	known	frame_shift_del	c.880	p.S296fs	1.000	pfam_Alg10,pirsf_Alg10	pfam_Alg10,pirsf_Alg10	-	no_errors	ALG10B	HGNC	ENSG00000175548				372	0	0	269	30	10.0334
SENP1	0	genome.wustl.edu	37	12	48458896	48458896	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	12	48458896	48458896	T	-	DEL	SENP1	ENST00000004980	human	ensembl	74_37	-1	known	frame_shift_del	c.1227	p.G410fs	0.206	NULL	pfam_Peptidase_C48,pfscan_Peptidase_C48	-	no_errors	SENP1	HGNC	ENSG00000079387				51	0	0	35	17	32.6923
KMT2D	0	genome.wustl.edu	37	12	49443667	49443667	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	12	49443667	49443667	C	-	DEL	KMT2D	ENST00000301067	human	ensembl	74_37	-1	known	frame_shift_del	c.3704	p.G1235fs	0.962	NULL	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_box_dom,smart_Znf_PHD,smart_Znf_RING,smart_HMG_box_dom,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	KMT2D	HGNC	ENSG00000167548				168	0	0	126	32	20.2532
CBX5	0	genome.wustl.edu	37	12	54645832	54645832	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	12	54645832	54645832	T	-	DEL	CBX5	ENST00000209875	human	ensembl	74_37	-1	known	frame_shift_del	c.317	p.K106fs	1.000	superfamily_Chromodomain-like	pfam_Chromo_shadow_dom,pfam_Chromo_domain,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Chromo_shadow_dom,pfscan_Chromo_domain/shadow,prints_Chromo_dom_subgr	-	no_errors	CBX5	HGNC	ENSG00000094916				429	1	0.232558	317	47	12.9121
OR10A7	0	genome.wustl.edu	37	12	55615114	55615116	+	In_Frame_Del	DEL	CTT	CTT	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	CTT	CTT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	12	55615114	55615116	CTT	-	DEL	OR10A7	ENST00000326258	human	ensembl	74_37	+1	known	in_frame_del	c.306_308	p.F106in_frame_del	0.334:0.368:0.372	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR10A7	HGNC	ENSG00000179919				499	1	0.2	370	96	20.6009
MYO1A	0	genome.wustl.edu	37	12	57422573	57422573	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	12	57422573	57422573	T	-	DEL	MYO1A	ENST00000300119	human	ensembl	74_37	-1	known	frame_shift_del	c.3098	p.K1033fs	1.000	pfam_Myosin_tail_2	pfam_Myosin_head_motor_dom,pfam_Myosin_tail_2,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS	-	no_errors	MYO1A	HGNC	ENSG00000166866				179	0	0	132	35	20.9581
GLI1	0	genome.wustl.edu	37	12	57860075	57860075	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	12	57860075	57860075	G	-	DEL	GLI1	ENST00000228682	human	ensembl	74_37	+1	known	frame_shift_del	c.815	p.G274fs	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	GLI1	HGNC	ENSG00000111087				340	0	0	274	77	21.9373
GNS	0	genome.wustl.edu	37	12	65141602	65141603	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	12	65141602	65141603	-	C	INS	GNS	ENST00000258145	human	ensembl	74_37	-1	known	frame_shift_ins	c.349_348	p.N116fs	1.000:0.898	pfam_Sulfatase,superfamily_Alkaline_phosphatase_core,pirsf_GlcNAc_6-SO4ase	pfam_Sulfatase,superfamily_Alkaline_phosphatase_core,pirsf_GlcNAc_6-SO4ase	-	no_errors	GNS	HGNC	ENSG00000135677				295	0	0	241	29	10.7407
GRIP1	0	genome.wustl.edu	37	12	66788074	66788074	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	12	66788074	66788074	C	-	DEL	GRIP1	ENST00000359742	human	ensembl	74_37	-1	known	frame_shift_del	c.2043	p.G684fs	0.965	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	GRIP1	HGNC	ENSG00000155974				159	0	0	133	20	13.0719
YEATS4	0	genome.wustl.edu	37	12	69783974	69783974	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	12	69783974	69783974	A	-	DEL	YEATS4	ENST00000247843	human	ensembl	74_37	+1	known	frame_shift_del	c.562	p.T190fs	1.000	NULL	pfam_YEATS,pfscan_YEATS	-	no_errors	YEATS4	HGNC	ENSG00000127337				58	0	0	32	11	25.5814
UBE2N	0	genome.wustl.edu	37	12	93804686	93804686	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	12	93804686	93804686	A	-	DEL	UBE2N	ENST00000550657	human	ensembl	74_37	-1	novel	frame_shift_del	c.420	p.H141fs	0.048	NULL	pfam_UBQ-conjugat_E2,superfamily_UBQ-conjugating_enzyme/RWD,pfscan_UBQ-conjugat_E2	-	no_errors	UBE2N	HGNC	ENSG00000177889				98	0	0	63	15	19.2308
COL4A2	0	genome.wustl.edu	37	13	111114439	111114439	+	RNA	DEL	T	T	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	13	111114439	111114439	T	-	DEL	COL4A2	ENST00000478681	human	ensembl	74_37	+1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	COL4A2	HGNC	ENSG00000134871				42	0	0	28	11	28.2051
GAS6	0	genome.wustl.edu	37	13	114523858	114523858	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	13	114523858	114523858	G	-	DEL	GAS6	ENST00000357389	human	ensembl	74_37	-1	known	frame_shift_del	c.2145	p.V716fs	0.008	superfamily_ConA-like_lec_gl_sf	pfam_Laminin_G,pfam_EGF-like_Ca-bd_dom,pfam_GLA_domain,superfamily_ConA-like_lec_gl_sf,superfamily_GLA_domain,smart_GLA_domain,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_Laminin_G,pfscan_EG-like_dom,pfscan_GLA_domain,pfscan_Laminin_G,prints_GLA_domain	-	no_errors	GAS6	HGNC	ENSG00000183087				83	0	0	43	12	21.8182
SACS	0	genome.wustl.edu	37	13	23912864	23912864	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	13	23912864	23912864	T	-	DEL	SACS	ENST00000382292	human	ensembl	74_37	-1	known	frame_shift_del	c.5151	p.K1717fs	0.000	NULL	pfam_HEPN,pfam_Ubiquitin_dom,superfamily_HATPase_ATP-bd,superfamily_DnaJ_domain,smart_HEPN,pfscan_HEPN,pfscan_DnaJ_domain,pfscan_Ubiquitin_supergroup	-	no_errors	SACS	HGNC	ENSG00000151835				101	0	0	49	9	15.5172
RNF6	0	genome.wustl.edu	37	13	26788241	26788241	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	13	26788241	26788241	A	-	DEL	RNF6	ENST00000346166	human	ensembl	74_37	-1	known	frame_shift_del	c.1778	p.L593fs	1.000	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF6	HGNC	ENSG00000127870				279	1	0.357143	173	30	14.7783
CDX2	0	genome.wustl.edu	37	13	28537277	28537278	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	13	28537277	28537278	-	C	INS	CDX2	ENST00000381020	human	ensembl	74_37	-1	known	frame_shift_ins	c.917_916	p.V306fs	0.999:0.992	NULL	pfam_Caudal_activation_dom,pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_HTH_motif,prints_Homeobox_metazoa	-	no_errors	CDX2	HGNC	ENSG00000165556				109	0	0	66	13	16.4557
SLC46A3	0	genome.wustl.edu	37	13	29278265	29278265	+	RNA	DEL	A	A	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	13	29278265	29278265	A	-	DEL	SLC46A3	ENST00000475385	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SLC46A3	HGNC	ENSG00000139508				64	0	0	42	8	16
BRCA2	0	genome.wustl.edu	37	13	32913836	32913837	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	13	32913836	32913837	-	A	INS	BRCA2	ENST00000380152	human	ensembl	74_37	+1	known	frame_shift_ins	c.5344_5345	p.N1784fs	0.000:0.000	pirsf_BRCA2	pfam_DNA_recomb/repair_BRCA2_hlx,pfam_BRCA2_repeat,pfam_BRCA2_OB_3,pfam_BRCA2_OB_1,pfam_Tower,superfamily_DNA_recomb/repair_BRCA2_hlx,superfamily_NA-bd_OB-fold,pirsf_BRCA2,pfscan_BRCA2_repeat	-	no_errors	BRCA2	HGNC	ENSG00000139618				76	0	0	53	10	15.873
PDS5B	0	genome.wustl.edu	37	13	33344568	33344568	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	13	33344568	33344568	A	-	DEL	PDS5B	ENST00000315596	human	ensembl	74_37	+1	known	frame_shift_del	c.3934	p.G1314fs	1.000	NULL	superfamily_ARM-type_fold	-	no_errors	PDS5B	HGNC	ENSG00000083642				95	0	0	51	9	15
RB1	0	genome.wustl.edu	37	13	49030368	49030368	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	13	49030368	49030368	A	-	DEL	RB1	ENST00000267163	human	ensembl	74_37	+1	known	frame_shift_del	c.1843	p.G617fs	1.000	NULL	pfam_RB_C,pfam_RB_A,pfam_RB_B,pfam_RB_N,superfamily_Cyclin-like,smart_Cyclin-like	-	no_errors	RB1	HGNC	ENSG00000139687				76	0	0	57	14	19.7183
RBM26	0	genome.wustl.edu	37	13	79918807	79918807	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	13	79918807	79918807	T	-	DEL	RBM26	ENST00000438724	human	ensembl	74_37	-1	known	frame_shift_del	c.2109	p.K703fs	1.000	NULL	pfam_PWI_dom,superfamily_PWI_dom,smart_Znf_CCCH,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBM26	HGNC	ENSG00000139746				102	0	0	41	13	24.0741
YY1	0	genome.wustl.edu	37	14	100728644	100728644	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	14	100728644	100728644	A	-	DEL	YY1	ENST00000262238	human	ensembl	74_37	+1	known	frame_shift_del	c.683	p.D231fs	1.000	pirsf_TF_Yin_yang	pfam_Znf_C2H2,smart_Znf_C2H2-like,pirsf_TF_Yin_yang,pfscan_Znf_C2H2	-	no_errors	YY1	HGNC	ENSG00000100811				108	0	0	59	8	11.9403
LOC101929718	0	genome.wustl.edu	37	14	21464349	21464349	+	RNA	DEL	T	T	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	14	21464349	21464349	T	-	DEL	LOC101929718	ENST00000557335	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RP11-84C10.4	Clone_based_vega_gene	ENSG00000258471				603	0	0	385	94	19.6242
HOMEZ	0	genome.wustl.edu	37	14	23745847	23745848	+	Frame_Shift_Del	DEL	CT	CT	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	CT	CT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	14	23745847	23745848	CT	-	DEL	HOMEZ	ENST00000431326	human	ensembl	74_37	-1	known	frame_shift_del	c.596_595	p.H200fs	0.989:0.911	NULL	superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	-	no_errors	HOMEZ	HGNC	ENSG00000215271				239	0	0	154	34	18.0851
ENSG00000270433	0	genome.wustl.edu	37	14	23764353	23764355	+	RNA	DEL	AAA	AAA	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	AAA	AAA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	14	23764353	23764355	AAA	-	DEL	ENSG00000270433	ENST00000604456	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000:0.002:0.007	-	-	-	no_errors	RP11-124D2.7	Clone_based_vega_gene	ENSG00000270433				19	0	0	12	4	25
BAZ1A	0	genome.wustl.edu	37	14	35331423	35331423	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	14	35331423	35331423	T	-	DEL	BAZ1A	ENST00000360310	human	ensembl	74_37	-1	known	frame_shift_del	c.219	p.A74fs	1.000	pfam_WSTF_Acf1_Cbp146,pfscan_WSTF_Acf1_Cbp146	pfam_WSTF_Acf1_Cbp146,pfam_Bromodomain,pfam_DDT_dom,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_DDT_dom_subgr,smart_Znf_PHD,smart_Bromodomain,pfscan_WSTF_Acf1_Cbp146,pfscan_Znf_PHD-finger,pfscan_DDT_dom_superfamily,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BAZ1A	HGNC	ENSG00000198604				304	1	0.327869	204	39	16.0494
SEC23A	0	genome.wustl.edu	37	14	39508238	39508238	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	14	39508238	39508238	C	-	DEL	SEC23A	ENST00000307712	human	ensembl	74_37	-1	known	frame_shift_del	c.2205	p.Q736fs	0.917	NULL	pfam_Sec23/24_trunk_dom,pfam_Sec23/24_helical_dom,pfam_Sec23_24_beta_S,pfam_Znf_Sec23_Sec24,pfam_Gelsolin_dom,superfamily_Sec23/24_helical_dom,superfamily_Znf_Sec23_Sec24	-	no_errors	SEC23A	HGNC	ENSG00000100934				158	0	0	83	13	13.5417
C14orf28	0	genome.wustl.edu	37	14	45370057	45370058	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	14	45370057	45370058	-	A	INS	C14orf28	ENST00000325192	human	ensembl	74_37	+1	known	frame_shift_ins	c.419_420	p.N142fs	1.000:0.823	NULL	NULL	-	no_errors	C14orf28	HGNC	ENSG00000179476				95	0	0	48	9	15.7895
PTGER2	0	genome.wustl.edu	37	14	52782002	52782002	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	14	52782002	52782002	G	-	DEL	PTGER2	ENST00000245457	human	ensembl	74_37	+1	known	frame_shift_del	c.736	p.A247fs	0.002	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Prostglndn_EP2_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_Prostglndn_EP2_rcpt,prints_Prostanoid_rcpt,prints_GPCR_Rhodpsn	-	no_errors	PTGER2	HGNC	ENSG00000125384				34	0	0	41	3	6.81818
GCH1	0	genome.wustl.edu	37	14	55310530	55310530	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	14	55310530	55310530	A	-	DEL	GCH1	ENST00000543643	human	ensembl	74_37	-1	novel	frame_shift_del	c.684	p.F228fs	0.972	NULL	pfam_GTP_CycHdrlase_I_dom,tigrfam_GTP_CycHdrlase_I	-	no_errors	GCH1	HGNC	ENSG00000131979				198	0	0	122	21	14.6853
KTN1	0	genome.wustl.edu	37	14	56137475	56137475	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	14	56137475	56137475	A	-	DEL	KTN1	ENST00000395309	human	ensembl	74_37	+1	known	frame_shift_del	c.3296	p.K1101fs	1.000	NULL	NULL	-	no_errors	KTN1	HGNC	ENSG00000126777				149	0	0	95	14	12.844
OTX2	0	genome.wustl.edu	37	14	57271049	57271049	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	14	57271049	57271049	G	-	DEL	OTX2	ENST00000339475	human	ensembl	74_37	-1	known	frame_shift_del	c.130	p.R44fs	0.947	superfamily_Homeodomain-like,pfscan_Homeobox_dom	pfam_Otx_TF_C,pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Otx2_TF,prints_Otx_TF	-	no_errors	OTX2	HGNC	ENSG00000165588				123	0	0	59	10	14.4928
KCNH5	0	genome.wustl.edu	37	14	63174303	63174303	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	14	63174303	63174303	G	-	DEL	KCNH5	ENST00000322893	human	ensembl	74_37	-1	known	frame_shift_del	c.2890	p.Q964fs	1.000	NULL	pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom,pfam_cNMP-bd_dom,pfam_PAS_fold,superfamily_cNMP-bd-like,superfamily_PAS,smart_PAC,smart_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG,prints_K_chnl_volt-dep_EAG/ELK/ERG,prints_K_chnl_volt-dep_ERG,pfscan_cNMP-bd_dom,pfscan_PAS-assoc_C,tigrfam_PAS	-	no_errors	KCNH5	HGNC	ENSG00000140015				359	0	0	240	45	15.7895
ZFYVE26	0	genome.wustl.edu	37	14	68215185	68215185	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	14	68215185	68215185	G	-	DEL	ZFYVE26	ENST00000347230	human	ensembl	74_37	-1	known	frame_shift_del	c.7588	p.R2530fs	0.116	NULL	pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,smart_Znf_FYVE,pfscan_Znf_FYVE-rel	-	no_errors	ZFYVE26	HGNC	ENSG00000072121				94	0	0	61	10	14.0845
LTBP2	0	genome.wustl.edu	37	14	74967607	74967607	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	14	74967607	74967607	G	-	DEL	LTBP2	ENST00000261978	human	ensembl	74_37	-1	known	frame_shift_del	c.5446	p.H1816fs	0.817	pfam_EGF-like_Ca-bd_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom	pfam_EGF-like_Ca-bd_dom,pfam_TB_dom,pfam_EG-like_dom,superfamily_TB_dom,superfamily_Growth_fac_rcpt_N_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom	-	no_errors	LTBP2	HGNC	ENSG00000119681				93	0	0	64	20	23.8095
LTBP2	0	genome.wustl.edu	37	14	75017918	75017918	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	14	75017918	75017918	G	-	DEL	LTBP2	ENST00000261978	human	ensembl	74_37	-1	known	frame_shift_del	c.1535	p.P512fs	0.000	NULL	pfam_EGF-like_Ca-bd_dom,pfam_TB_dom,pfam_EG-like_dom,superfamily_TB_dom,superfamily_Growth_fac_rcpt_N_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom	-	no_errors	LTBP2	HGNC	ENSG00000119681				49	0	0	38	8	17.3913
UNC79	0	genome.wustl.edu	37	14	94088050	94088050	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	14	94088050	94088050	A	-	DEL	UNC79	ENST00000553484	human	ensembl	74_37	+1	known	frame_shift_del	c.4537	p.K1515fs	1.000	superfamily_ARM-type_fold	superfamily_P-loop_NTPase,superfamily_ARM-type_fold	-	no_errors	UNC79	HGNC	ENSG00000133958				141	0	0	83	22	20.9524
MAGEL2	0	genome.wustl.edu	37	15	23890894	23890894	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	15	23890894	23890894	G	-	DEL	MAGEL2	ENST00000532292	human	ensembl	74_37	-1	known	frame_shift_del	c.187	p.Q63fs	0.990	NULL	pfam_MAGE,pfscan_MAGE	-	no_errors	MAGEL2	HGNC	ENSG00000254585				21	0	0	14	3	17.6471
ATP10A	0	genome.wustl.edu	37	15	25924712	25924712	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	15	25924712	25924712	G	-	DEL	ATP10A	ENST00000356865	human	ensembl	74_37	-1	known	frame_shift_del	c.4276	p.L1426fs	0.001	NULL	pfam_ATPase_P-typ_transduc_dom_A,pfam_HAD-like_dom,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Plipid-transp,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP10A	HGNC	ENSG00000206190				146	0	0	86	12	12.2449
LOC101929232	0	genome.wustl.edu	37	15	29083887	29083887	+	RNA	DEL	A	A	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	15	29083887	29083887	A	-	DEL	LOC101929232	ENST00000563144	human	ensembl	74_37	+1	putative	rna	NULL	NULL	0.999	-	-	-	no_errors	RP11-578F21.12	Clone_based_vega_gene	ENSG00000261377				86	0	0	52	16	23.5294
RYR3	0	genome.wustl.edu	37	15	34145819	34145819	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	15	34145819	34145819	A	-	DEL	RYR3	ENST00000389232	human	ensembl	74_37	+1	known	frame_shift_del	c.13735	p.N4580fs	1.000	NULL	pfam_Ryanodine_rcpt,pfam_Ca-rel_channel,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ConA-like_lec_gl_sf,superfamily_4_helix_cytokine-like_core,superfamily_ARM-type_fold,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_hand_dom,pfscan_MIR_motif	-	no_errors	RYR3	HGNC	ENSG00000198838				86	0	0	77	12	13.4831
THBS1	0	genome.wustl.edu	37	15	39874929	39874929	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	15	39874929	39874929	G	-	DEL	THBS1	ENST00000260356	human	ensembl	74_37	+1	known	frame_shift_del	c.603	p.G203fs	1.000	superfamily_ConA-like_lec_gl_sf,smart_Laminin_G	pfam_Thrombospondin_C,pfam_Thrombospondin_1_rpt,pfam_VWF_C,pfam_Thrombospondin_3-like_rpt,pfam_EGF-like_Ca-bd_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Thrombospondin_1_rpt,smart_Laminin_G,smart_VWF_C,smart_Thrombospondin_1_rpt,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Thrombospondin_1_rpt,pfscan_VWF_C	-	no_errors	THBS1	HGNC	ENSG00000137801				90	0	0	68	6	8.10811
DISP2	0	genome.wustl.edu	37	15	40660037	40660038	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	15	40660037	40660038	-	G	INS	DISP2	ENST00000267889	human	ensembl	74_37	+1	known	frame_shift_ins	c.1724_1725	p.L578fs	0.288:0.002	pfscan_SSD	pfscan_SSD	-	no_errors	DISP2	HGNC	ENSG00000140323				65	0	0	32	2	5.88235
CASC5	0	genome.wustl.edu	37	15	40912976	40912977	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	15	40912976	40912977	-	A	INS	CASC5	ENST00000346991	human	ensembl	74_37	+1	known	frame_shift_ins	c.592_593	p.S200fs	0.731:0.820	NULL	NULL	-	no_errors	CASC5	HGNC	ENSG00000137812				141	0	0	84	13	13.4021
VPS18	0	genome.wustl.edu	37	15	41191837	41191837	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	15	41191837	41191837	C	-	DEL	VPS18	ENST00000220509	human	ensembl	74_37	+1	known	frame_shift_del	c.821	p.K276fs	1.000	NULL	pfam_Pep3_Vps18,pfam_Clathrin_H-chain/VPS_repeat,superfamily_ARM-type_fold	-	no_errors	VPS18	HGNC	ENSG00000104142				211	0	0	134	20	12.987
TTBK2	0	genome.wustl.edu	37	15	43044817	43044817	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	15	43044817	43044817	T	-	DEL	TTBK2	ENST00000267890	human	ensembl	74_37	-1	known	frame_shift_del	c.2627	p.N876fs	0.081	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	TTBK2	HGNC	ENSG00000128881				199	0	0	133	16	10.7383
TP53BP1	0	genome.wustl.edu	37	15	43748297	43748297	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	15	43748297	43748297	G	-	DEL	TP53BP1	ENST00000382044	human	ensembl	74_37	-1	known	frame_shift_del	c.2509	p.Q837fs	0.880	NULL	pfam_53-BP1_Tudor,superfamily_BRCT_dom,smart_BRCT_dom,pfscan_BRCT_dom	-	no_errors	TP53BP1	HGNC	ENSG00000067369				286	0	0	191	43	18.3761
ENSG00000259241	0	genome.wustl.edu	37	15	51987960	51987963	+	RNA	DEL	AAAA	AAAA	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	AAAA	AAAA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	15	51987960	51987963	AAAA	-	DEL	ENSG00000259241	ENST00000559918	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.006:0.012:0.011:0.004	-	-	-	no_errors	RP11-313P18.2	Clone_based_vega_gene	ENSG00000259241				29	0	0	20	5	20
UNC13C	0	genome.wustl.edu	37	15	54527275	54527276	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	15	54527275	54527276	-	A	INS	UNC13C	ENST00000260323	human	ensembl	74_37	+1	known	frame_shift_ins	c.3119_3120	p.T1043fs	1.000:1.000	NULL	pfam_Munc13_subgr_dom-2,pfam_Ca-dep_secretion_activator,pfam_C2_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_C2_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_C2_dom,pfscan_C2_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,prints_C2_dom	-	no_errors	UNC13C	HGNC	ENSG00000137766				117	0	0	74	7	8.64198
TCF12	0	genome.wustl.edu	37	15	57489984	57489984	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	15	57489984	57489984	A	-	DEL	TCF12	ENST00000438423	human	ensembl	74_37	+1	known	frame_shift_del	c.540	p.V183fs	1.000	NULL	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	TCF12	HGNC	ENSG00000140262				153	0	0	100	20	16.6667
NARG2	0	genome.wustl.edu	37	15	60745782	60745782	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	15	60745782	60745782	A	-	DEL	NARG2	ENST00000561114	human	ensembl	74_37	-1	putative	frame_shift_del	c.1145	p.F382fs	0.000	NULL	NULL	-	no_errors	NARG2	HGNC	ENSG00000128915				88	0	0	28	15	34.8837
ZNF609	0	genome.wustl.edu	37	15	64967247	64967247	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	15	64967247	64967247	A	-	DEL	ZNF609	ENST00000326648	human	ensembl	74_37	+1	known	frame_shift_del	c.2194	p.K734fs	1.000	NULL	pfscan_Znf_C2H2	-	no_errors	ZNF609	HGNC	ENSG00000180357				395	0	0	221	57	20.5036
TIPIN	0	genome.wustl.edu	37	15	66672095	66672095	+	RNA	DEL	T	T	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	15	66672095	66672095	T	-	DEL	TIPIN	ENST00000561773	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.998	-	-	-	no_errors	TIPIN	HGNC	ENSG00000075131				89	0	0	60	14	18.9189
C15orf39	0	genome.wustl.edu	37	15	75499804	75499804	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	15	75499804	75499804	C	-	DEL	C15orf39	ENST00000360639	human	ensembl	74_37	+1	known	frame_shift_del	c.1415	p.P474fs	0.848	NULL	NULL	-	no_errors	C15orf39	HGNC	ENSG00000167173				130	0	0	96	6	5.88235
IL16	0	genome.wustl.edu	37	15	81592162	81592164	+	In_Frame_Del	DEL	CCT	CCT	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	CCT	CCT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	15	81592162	81592164	CCT	-	DEL	IL16	ENST00000302987	human	ensembl	74_37	+1	known	in_frame_del	c.2495_2497	p.S836in_frame_del	0.001:0.004:0.009	NULL	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ,prints_IL-16	-	no_errors	IL16	HGNC	ENSG00000172349				100	0	0	69	4	5.47945
AKAP13	0	genome.wustl.edu	37	15	86287017	86287017	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	15	86287017	86287017	A	-	DEL	AKAP13	ENST00000361243	human	ensembl	74_37	+1	known	frame_shift_del	c.8365	p.K2791fs	0.995	NULL	pfam_DH-domain,pfam_Pleckstrin_homology,superfamily_DH-domain,superfamily_Ankyrin_rpt-contain_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_DH-domain	-	no_errors	AKAP13	HGNC	ENSG00000170776				96	0	0	71	7	8.97436
BLM	0	genome.wustl.edu	37	15	91304139	91304139	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	15	91304139	91304139	A	-	DEL	BLM	ENST00000355112	human	ensembl	74_37	+1	known	frame_shift_del	c.1536	p.N515fs	0.003	NULL	pfam_RQC_domain,pfam_BDHCT,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,pfam_HRDC_dom,superfamily_P-loop_NTPase,superfamily_HRDC-like,smart_Helicase_ATP-bd,smart_Helicase_C,smart_RQC_domain,smart_HRDC_dom,pfscan_HRDC_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,tigrfam_DNA_helicase_ATP-dep_RecQ	-	no_errors	BLM	HGNC	ENSG00000197299				149	1	0.666667	85	24	22.0183
C15orf32	0	genome.wustl.edu	37	15	93015505	93015505	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	15	93015505	93015505	C	-	DEL	C15orf32	ENST00000333334	human	ensembl	74_37	+1	known	frame_shift_del	c.127	p.P44fs	0.002	NULL	NULL	-	no_errors	C15orf32	HGNC	ENSG00000183643				243	0	0	161	24	12.973
CHD2	0	genome.wustl.edu	37	15	93480819	93480819	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	15	93480819	93480819	A	-	DEL	CHD2	ENST00000420239	human	ensembl	74_37	+1	known	frame_shift_del	c.515	p.V175fs	1.000	NULL	pfam_Chromo_domain,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,pfscan_Chromo_domain/shadow	-	no_errors	CHD2	HGNC	ENSG00000173575				55	0	0	29	15	34.0909
TVP23A	0	genome.wustl.edu	37	16	10867203	10867204	+	Frame_Shift_Del	DEL	AA	AA	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	16	10867203	10867204	AA	-	DEL	TVP23A	ENST00000299866	human	ensembl	74_37	-1	known	frame_shift_del	c.420_419	p.F140fs	1.000:1.000	pfam_DUF846_euk	pfam_DUF846_euk	-	no_errors	TVP23A	HGNC	ENSG00000166676				122	0	0	79	27	25.4717
KNOP1	0	genome.wustl.edu	37	16	19725706	19725706	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	16	19725706	19725706	T	-	DEL	KNOP1	ENST00000219837	human	ensembl	74_37	-1	known	frame_shift_del	c.652	p.I218fs	0.397	NULL	NULL	-	no_errors	KNOP1	HGNC	ENSG00000103550				209	1	0.47619	160	57	26.2673
TNRC6A	0	genome.wustl.edu	37	16	24762058	24762060	+	In_Frame_Del	DEL	AAG	AAG	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	AAG	AAG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	16	24762058	24762060	AAG	-	DEL	TNRC6A	ENST00000395799	human	ensembl	74_37	+1	known	in_frame_del	c.65_67	p.E25in_frame_del	1.000:1.000:1.000	NULL	pfam_Argonaute_hook_dom,superfamily_UBA-like	-	no_errors	TNRC6A	HGNC	ENSG00000090905				151	0	0	114	30	20.8333
INO80E	0	genome.wustl.edu	37	16	30007665	30007665	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	16	30007665	30007665	A	-	DEL	INO80E	ENST00000563197	human	ensembl	74_37	+1	known	frame_shift_del	c.34	p.K14fs	1.000	NULL	NULL	-	no_errors	INO80E	HGNC	ENSG00000169592				16	0	0	9	4	30.7692
INO80E	0	genome.wustl.edu	37	16	30016653	30016653	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	16	30016653	30016653	C	-	DEL	INO80E	ENST00000563197	human	ensembl	74_37	+1	known	frame_shift_del	c.625	p.T212fs	1.000	NULL	NULL	-	no_errors	INO80E	HGNC	ENSG00000169592				8	0	0	8	4	33.3333
SLX4	0	genome.wustl.edu	37	16	3652290	3652290	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	16	3652290	3652290	G	-	DEL	SLX4	ENST00000294008	human	ensembl	74_37	-1	known	frame_shift_del	c.779	p.P260fs	0.015	NULL	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like	-	no_errors	SLX4	HGNC	ENSG00000188827				255	0	0	210	18	7.89474
CREBBP	0	genome.wustl.edu	37	16	3777898	3777898	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	16	3777898	3777898	G	-	DEL	CREBBP	ENST00000262367	human	ensembl	74_37	-1	known	frame_shift_del	c.7150	p.H2384fs	1.000	NULL	pfam_Histone_H3-K56_AcTrfase_RTT109,pfam_Nuc_rcpt_coact_CREBbp,pfam_KIX_dom,pfam_DUF902_CREBbp,pfam_Znf_TAZ,pfam_Bromodomain,pfam_Znf_ZZ,superfamily_Bromodomain,superfamily_Znf_TAZ,superfamily_KIX_dom,superfamily_Nuc_rcpt_coact,superfamily_Znf_FYVE_PHD,smart_Znf_TAZ,smart_Bromodomain,smart_Znf_ZZ,pfscan_KIX_dom,pfscan_Znf_TAZ,pfscan_Znf_ZZ,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	CREBBP	HGNC	ENSG00000005339				229	0	0	167	46	21.5962
DKFZP434H168	0	genome.wustl.edu	37	16	56226639	56226642	+	RNA	DEL	CACA	CACA	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	CACA	CACA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	16	56226639	56226642	CACA	-	DEL	DKFZP434H168	ENST00000567381	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.271:0.327:0.946:0.970	-	-	-	no_errors	CTD-2050B12.2	Clone_based_vega_gene	ENSG00000261439				11	0	0	12	6	33.3333
OGFOD1	0	genome.wustl.edu	37	16	56485630	56485630	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	16	56485630	56485630	A	-	DEL	OGFOD1	ENST00000566157	human	ensembl	74_37	+1	known	frame_shift_del	c.106	p.K37fs	1.000	NULL	pfam_Oxoglutarate/Fe-dep_Oase_C,smart_Pro_4_hyd_alph	-	no_errors	OGFOD1	HGNC	ENSG00000087263				94	0	0	80	28	25.9259
WWP2	0	genome.wustl.edu	37	16	69959257	69959257	+	RNA	DEL	T	T	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	16	69959257	69959257	T	-	DEL	WWP2	ENST00000568185	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	WWP2	HGNC	ENSG00000198373				497	1	0.200803	438	91	17.2023
CFDP1	0	genome.wustl.edu	37	16	75327732	75327732	+	RNA	DEL	A	A	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	16	75327732	75327732	A	-	DEL	CFDP1	ENST00000570103	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.940	-	-	-	no_errors	CFDP1	HGNC	ENSG00000153774				10	0	0	12	3	20
BANP	0	genome.wustl.edu	37	16	88014616	88014616	+	RNA	DEL	T	T	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	16	88014616	88014616	T	-	DEL	BANP	ENST00000474563	human	ensembl	74_37	+1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	BANP	HGNC	ENSG00000172530				47	0	0	40	14	25.9259
TCF25	0	genome.wustl.edu	37	16	89951020	89951020	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	16	89951020	89951020	A	-	DEL	TCF25	ENST00000263346	human	ensembl	74_37	+1	known	frame_shift_del	c.385	p.K131fs	1.000	NULL	pfam_TCF25	-	no_errors	TCF25	HGNC	ENSG00000141002				52	0	0	35	9	20.4545
NT5M	0	genome.wustl.edu	37	17	17250190	17250190	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	17	17250190	17250190	C	-	DEL	NT5M	ENST00000389022	human	ensembl	74_37	+1	known	frame_shift_del	c.616	p.R208fs	1.000	pfam_5'(3')-deoxyribonucleotidase,superfamily_HAD-like_dom	pfam_5'(3')-deoxyribonucleotidase,superfamily_HAD-like_dom	-	no_errors	NT5M	HGNC	ENSG00000205309				80	0	0	58	10	14.7059
MYO15A	0	genome.wustl.edu	37	17	18023293	18023293	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	17	18023293	18023293	C	-	DEL	MYO15A	ENST00000205890	human	ensembl	74_37	+1	known	frame_shift_del	c.1179	p.E396fs	0.850	NULL	pfam_Myosin_head_motor_dom,pfam_MyTH4_dom,pfam_SH3_2,pfam_FERM_central,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,superfamily_FERM_central,superfamily_SH3_domain,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_MyTH4_dom,smart_SH3_domain,smart_Band_41_domain,pfscan_FERM_domain,pfscan_IQ_motif_EF-hand-BS,pfscan_MyTH4_dom,prints_Myosin_head_motor_dom	-	no_errors	MYO15A	HGNC	ENSG00000091536				125	0	0	86	11	11.3402
CLUH	0	genome.wustl.edu	37	17	2601713	2601713	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	17	2601713	2601713	C	-	DEL	CLUH	ENST00000435359	human	ensembl	74_37	-1	known	frame_shift_del	c.1324	p.D442fs	1.000	NULL	superfamily_GSKIP_dom	-	no_errors	CLUH	HGNC	ENSG00000132361				94	0	0	56	10	15.1515
CRYBA1	0	genome.wustl.edu	37	17	27577216	27577218	+	In_Frame_Del	DEL	AGG	AGG	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	AGG	AGG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	17	27577216	27577218	AGG	-	DEL	CRYBA1	ENST00000225387	human	ensembl	74_37	+1	known	in_frame_del	c.113_115	p.E39in_frame_del	1.000:1.000:1.000	pfam_Beta/gamma_crystallin,superfamily_G_crystallin-rel,smart_Beta/gamma_crystallin,pfscan_Beta/gamma_crystallin	pfam_Beta/gamma_crystallin,superfamily_G_crystallin-rel,smart_Beta/gamma_crystallin,pfscan_Beta/gamma_crystallin,prints_Beta/gamma_crystallin	-	no_errors	CRYBA1	HGNC	ENSG00000108255				124	0	0	84	14	14.2857
NSRP1	0	genome.wustl.edu	37	17	28505167	28505167	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	17	28505167	28505167	A	-	DEL	NSRP1	ENST00000247026	human	ensembl	74_37	+1	known	frame_shift_del	c.250	p.K86fs	1.000	pfam_DUF2040	pfam_DUF2040	-	no_errors	NSRP1	HGNC	ENSG00000126653				139	0	0	68	18	20.9302
SLFN12	0	genome.wustl.edu	37	17	33749493	33749493	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	17	33749493	33749493	A	-	DEL	SLFN12	ENST00000304905	human	ensembl	74_37	-1	known	frame_shift_del	c.555	p.F185fs	0.080	NULL	pfam_ATPase_AAA-4	-	no_errors	SLFN12	HGNC	ENSG00000172123				185	0	0	124	25	16.7785
HOXB3	0	genome.wustl.edu	37	17	46629737	46629737	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	17	46629737	46629737	G	-	DEL	HOXB3	ENST00000311626	human	ensembl	74_37	-1	known	frame_shift_del	c.100	p.Q34fs	1.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa	-	no_errors	HOXB3	HGNC	ENSG00000120093				77	0	0	50	12	19.3548
XYLT2	0	genome.wustl.edu	37	17	48433967	48433967	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	17	48433967	48433967	C	-	DEL	XYLT2	ENST00000017003	human	ensembl	74_37	+1	known	frame_shift_del	c.1578	p.G529fs	1.000	pfam_XylT	pfam_XylT,pfam_Glyco_trans_14	-	no_errors	XYLT2	HGNC	ENSG00000015532				135	0	0	91	14	13.3333
CAMTA2	0	genome.wustl.edu	37	17	4875738	4875738	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	17	4875738	4875738	G	-	DEL	CAMTA2	ENST00000414043	human	ensembl	74_37	-1	known	frame_shift_del	c.2666	p.P889fs	1.000	NULL	pfam_CG-1_dom,pfam_IPT,pfam_IQ_motif_EF-hand-BS,superfamily_Ig_E-set,superfamily_Ankyrin_rpt-contain_dom,superfamily_P-loop_NTPase,pfscan_Ankyrin_rpt-contain_dom,pfscan_IQ_motif_EF-hand-BS	-	no_errors	CAMTA2	HGNC	ENSG00000108509				44	0	0	32	7	17.9487
SCPEP1	0	genome.wustl.edu	37	17	55078244	55078246	+	In_Frame_Del	DEL	GGA	GGA	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	GGA	GGA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	17	55078244	55078246	GGA	-	DEL	SCPEP1	ENST00000262288	human	ensembl	74_37	+1	known	in_frame_del	c.1023_1025	p.E343in_frame_del	1.000:0.998:0.928	pfam_Peptidase_S10	pfam_Peptidase_S10,prints_Peptidase_S10	-	no_errors	SCPEP1	HGNC	ENSG00000121064				128	0	0	81	17	17.3469
RNF43	0	genome.wustl.edu	37	17	56435161	56435161	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	17	56435161	56435161	C	-	DEL	RNF43	ENST00000407977	human	ensembl	74_37	-1	known	frame_shift_del	c.1976	p.G659fs	0.900	NULL	pfam_Znf_C3HC4_RING-type,superfamily_PAS,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF43	HGNC	ENSG00000108375				305	0	0	194	16	7.61905
TEX14	0	genome.wustl.edu	37	17	56642289	56642289	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	17	56642289	56642289	T	-	DEL	TEX14	ENST00000240361	human	ensembl	74_37	-1	known	frame_shift_del	c.4143	p.E1382fs	0.956	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Prot_kinase_dom	-	no_errors	TEX14	HGNC	ENSG00000121101				183	0	0	116	18	13.4328
TBX4	0	genome.wustl.edu	37	17	59560345	59560345	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	17	59560345	59560345	C	-	DEL	TBX4	ENST00000393853	human	ensembl	74_37	+1	known	frame_shift_del	c.1109	p.P372fs	1.000	NULL	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box,prints_TF_T-box	-	no_errors	TBX4	HGNC	ENSG00000121075				79	0	0	49	4	7.54717
MIR633	0	genome.wustl.edu	37	17	61021673	61021673	+	RNA	DEL	A	A	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	17	61021673	61021673	A	-	DEL	MIR633	ENST00000384821	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	MIR633	HGNC	ENSG00000207552				23	0	0	6	6	50
DDX5	0	genome.wustl.edu	37	17	62496298	62496298	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	17	62496298	62496298	T	-	DEL	DDX5	ENST00000225792	human	ensembl	74_37	-1	known	frame_shift_del	c.1588	p.T530fs	1.000	pfam_P68HR	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_P68HR,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX5	HGNC	ENSG00000108654				480	0	0	261	67	20.4268
SLC16A6	0	genome.wustl.edu	37	17	66270149	66270150	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	17	66270149	66270150	-	C	INS	SLC16A6	ENST00000327268	human	ensembl	74_37	-1	known	frame_shift_ins	c.295_294	p.L98fs	0.030:0.006	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC16A6	HGNC	ENSG00000108932				114	0	0	54	5	8.47458
ABCA5	0	genome.wustl.edu	37	17	67260957	67260957	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	17	67260957	67260957	A	-	DEL	ABCA5	ENST00000392677	human	ensembl	74_37	-1	known	frame_shift_del	c.3237	p.F1079fs	0.503	NULL	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA5	HGNC	ENSG00000154265				69	0	0	37	6	13.9535
ITGB4	0	genome.wustl.edu	37	17	73738521	73738521	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	17	73738521	73738521	C	-	DEL	ITGB4	ENST00000200181	human	ensembl	74_37	+1	known	frame_shift_del	c.2733	p.H912fs	1.000	pirsf_Integrin_bsu-4	pirsf_Integrin_bsu-4,pfam_Integrin_bsu_N,pfam_Fibronectin_type3,pfam_Calx_beta,pfam_Integrin_bsu_tail,pfam_EGF_extracell,superfamily_Fibronectin_type3,superfamily_Integrin_bsu_tail,superfamily_Plexin-like_fold,smart_Plexin-like_fold,smart_Integrin_bsu_N,smart_Calx_beta,smart_Fibronectin_type3,prints_Integrin_bsu,pfscan_Fibronectin_type3	-	no_errors	ITGB4	HGNC	ENSG00000132470				41	0	0	22	6	21.4286
GAA	0	genome.wustl.edu	37	17	78091429	78091429	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	17	78091429	78091429	C	-	DEL	GAA	ENST00000302262	human	ensembl	74_37	+1	known	frame_shift_del	c.2362	p.P789fs	0.000	pfam_Glyco_hydro_31	pfam_Glyco_hydro_31,pfam_P_trefoil,superfamily_Glycoside_hydrolase_SF,superfamily_Gal_mutarotase_SF_dom,smart_P_trefoil	-	no_errors	GAA	HGNC	ENSG00000171298				88	0	0	60	8	11.7647
ARL16	0	genome.wustl.edu	37	17	79650094	79650094	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	17	79650094	79650094	C	-	DEL	ARL16	ENST00000397498	human	ensembl	74_37	-1	known	frame_shift_del	c.255	p.C86fs	0.326	pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,smart_Small_GTPase_ARF,smart_Small_GTPase_SAR1	pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,smart_Small_GTPase_ARF,smart_Small_GTPase_SAR1	-	no_errors	ARL16	HGNC	ENSG00000214087				319	0	0	226	33	12.7413
P4HB	0	genome.wustl.edu	37	17	79803764	79803764	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	17	79803764	79803764	T	-	DEL	P4HB	ENST00000331483	human	ensembl	74_37	-1	known	frame_shift_del	c.1160	p.N387fs	1.000	pfam_Thioredoxin_domain,superfamily_Thioredoxin-like_fold,tigrfam_Prot_disulphide_isomerase,tigrfam_Disulphide_isomerase	pfam_Thioredoxin_domain,superfamily_Thioredoxin-like_fold,prints_Thioredoxin,tigrfam_Prot_disulphide_isomerase,tigrfam_Disulphide_isomerase	-	no_errors	P4HB	HGNC	ENSG00000185624				50	0	0	44	7	13.7255
FASN	0	genome.wustl.edu	37	17	80049540	80049540	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	17	80049540	80049540	G	-	DEL	FASN	ENST00000306749	human	ensembl	74_37	-1	known	frame_shift_del	c.1050	p.H350fs	0.854	pfam_Ketoacyl_synth_C,superfamily_Thiolase-like,smart_PKS_Beta-ketoAc_synthase_dom	pfam_Acyl_transferase,pfam_Ketoacyl_synth_N,pfam_Thioesterase,pfam_PKS_KR,pfam_DH_sc/Rdtase_SDR,pfam_Ketoacyl_synth_C,pfam_ADH_C,pfam_Acyl_carrier_prot-like,pfam_Methyltransf_12,pfam_Methyltransf_11,superfamily_Thiolase-like,superfamily_Acyl_Trfase/lysoPLipase,superfamily_GroES-like,superfamily_Acyl_carrier_prot-like,superfamily_Malonyl_transacylase_ACP-bd,smart_PKS_Beta-ketoAc_synthase_dom,smart_PKS_acyl_transferase,smart_PKS_dehydratase,smart_PKS_ER,smart_PKS/FAS_KR,smart_PKS_PP-bd,pfscan_Acyl_carrier_prot-like	-	no_errors	FASN	HGNC	ENSG00000169710				12	0	0	7	2	22.2222
POTEC	0	genome.wustl.edu	37	18	14542696	14542697	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	18	14542696	14542697	-	C	INS	POTEC	ENST00000358970	human	ensembl	74_37	-1	known	frame_shift_ins	c.450_449	p.K151fs	0.000:0.002	superfamily_Ankyrin_rpt-contain_dom,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	POTEC	HGNC	ENSG00000183206				281	0	0	202	41	16.8724
OSBPL1A	0	genome.wustl.edu	37	18	21745097	21745097	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	18	21745097	21745097	T	-	DEL	OSBPL1A	ENST00000319481	human	ensembl	74_37	-1	known	frame_shift_del	c.2682	p.K894fs	0.958	pfam_Oxysterol-bd	pfam_Oxysterol-bd,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Pleckstrin_homology,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Pleckstrin_homology,prints_Ankyrin_rpt	-	no_errors	OSBPL1A	HGNC	ENSG00000141447				327	0	0	280	41	12.7726
FHOD3	0	genome.wustl.edu	37	18	34205516	34205516	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	18	34205516	34205516	C	-	DEL	FHOD3	ENST00000257209	human	ensembl	74_37	+1	known	frame_shift_del	c.1000	p.S336fs	0.999	superfamily_ARM-type_fold	pfam_FH2_Formin,superfamily_ARM-type_fold,smart_FH2_Formin	-	no_errors	FHOD3	HGNC	ENSG00000134775				113	0	0	70	15	17.6471
DLGAP1	0	genome.wustl.edu	37	18	3879415	3879415	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	18	3879415	3879415	G	-	DEL	DLGAP1	ENST00000315677	human	ensembl	74_37	-1	known	frame_shift_del	c.654	p.S219fs	0.794	NULL	pfam_GKAP	-	no_errors	DLGAP1	HGNC	ENSG00000170579				311	0	0	224	51	18.5455
SYT4	0	genome.wustl.edu	37	18	40857246	40857246	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	18	40857246	40857246	T	-	DEL	SYT4	ENST00000255224	human	ensembl	74_37	-1	known	frame_shift_del	c.1	p.M1fs	1.000	NULL	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom,prints_Synaptotagmin	-	no_errors	SYT4	HGNC	ENSG00000132872				115	0	0	71	18	20.2247
MBD2	0	genome.wustl.edu	37	18	51750459	51750459	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	18	51750459	51750459	G	-	DEL	MBD2	ENST00000256429	human	ensembl	74_37	-1	known	frame_shift_del	c.471	p.G158fs	1.000	pfam_Methyl_CpG_DNA-bd,superfamily_DNA-bd_dom,smart_Methyl_CpG_DNA-bd,pfscan_Methyl_CpG_DNA-bd	pfam_Methyl_CpG_DNA-bd,superfamily_DNA-bd_dom,smart_Methyl_CpG_DNA-bd,pfscan_Methyl_CpG_DNA-bd	-	no_errors	MBD2	HGNC	ENSG00000134046				35	0	0	40	4	9.09091
WDR7	0	genome.wustl.edu	37	18	54358513	54358513	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	18	54358513	54358513	G	-	DEL	WDR7	ENST00000254442	human	ensembl	74_37	+1	known	frame_shift_del	c.784	p.D264fs	1.000	superfamily_Quinonprotein_ADH-like_supfam	pfam_WD40_repeat,superfamily_Quinonprotein_ADH-like_supfam,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR7	HGNC	ENSG00000091157				245	0	0	174	12	6.45161
LMAN1	0	genome.wustl.edu	37	18	57013285	57013285	+	Splice_Site	DEL	T	T	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	18	57013285	57013285	T	-	DEL	LMAN1	ENST00000251047	human	ensembl	74_37	-1	known	splice_site_del	c.823-2	e8-2	1.000	-	-	-	no_errors	LMAN1	HGNC	ENSG00000074695				212	1	0.469484	134	29	17.7914
ICAM1	0	genome.wustl.edu	37	19	10381850	10381850	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	19	10381850	10381850	C	-	DEL	ICAM1	ENST00000264832	human	ensembl	74_37	+1	known	frame_shift_del	c.15	p.R7fs	0.001	pfam_ICAM_N	pfam_ICAM_N,smart_Ig_sub,prints_ICAM_VCAM_N,prints_ICAM	-	no_errors	ICAM1	HGNC	ENSG00000090339				35	0	0	40	7	14.8936
FDX1L	0	genome.wustl.edu	37	19	10426107	10426107	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	19	10426107	10426107	C	-	DEL	FDX1L	ENST00000393708	human	ensembl	74_37	-1	known	frame_shift_del	c.262	p.D88fs	1.000	pfam_2Fe-2S_ferredoxin-type,superfamily_2Fe-2S_ferredoxin-type,pfscan_2Fe-2S_ferredoxin-type	pfam_2Fe-2S_ferredoxin-type,superfamily_2Fe-2S_ferredoxin-type,pfscan_2Fe-2S_ferredoxin-type,prints_Adrenodoxin	-	no_errors	FDX1L	HGNC	ENSG00000267673				60	0	0	42	10	19.2308
ICAM3	0	genome.wustl.edu	37	19	10446011	10446011	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	19	10446011	10446011	G	-	DEL	ICAM3	ENST00000160262	human	ensembl	74_37	-1	known	frame_shift_del	c.668	p.P223fs	0.000	NULL	pfam_ICAM_N,smart_Ig_sub,pfscan_Ig-like_dom,prints_ICAM_VCAM_N,prints_ICAM	-	no_errors	ICAM3	HGNC	ENSG00000076662				62	0	0	35	6	14.6341
ELAVL3	0	genome.wustl.edu	37	19	11577605	11577605	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	19	11577605	11577605	C	-	DEL	ELAVL3	ENST00000359227	human	ensembl	74_37	-1	known	frame_shift_del	c.47	p.G16fs	1.000	NULL	pfam_RRM_dom,smart_RRM_dom_euk,smart_RRM_dom,pfscan_RRM_dom,prints_Hud_Sxl_RNA,tigrfam_ELAD_HUD_SF	-	no_errors	ELAVL3	HGNC	ENSG00000196361				47	0	0	20	5	20
ZNF69	0	genome.wustl.edu	37	19	12016725	12016726	+	Frame_Shift_Del	DEL	CT	CT	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	CT	CT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	19	12016725	12016726	CT	-	DEL	ZNF69	ENST00000429654	human	ensembl	74_37	+1	known	frame_shift_del	c.1513_1514	p.Y506fs	0.894:0.628	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF69	HGNC	ENSG00000198429				101	0	0	59	21	26.25
PKN1	0	genome.wustl.edu	37	19	14562740	14562741	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	19	14562740	14562741	-	C	INS	PKN1	ENST00000342216	human	ensembl	74_37	+1	known	frame_shift_ins	c.1088_1089	p.F366fs	0.996:0.060	superfamily_C2_dom	pfam_Prot_kinase_dom,pfam_HR1_rho-bd,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_HR1_rho-bd,superfamily_C2_dom,smart_HR1_rho-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_Prot_kinase_dom	-	no_errors	PKN1	HGNC	ENSG00000123143				36	0	0	41	4	8.88889
NOTCH3	0	genome.wustl.edu	37	19	15302821	15302821	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	19	15302821	15302821	C	-	DEL	NOTCH3	ENST00000263388	human	ensembl	74_37	-1	known	frame_shift_del	c.629	p.G210fs	1.000	pirsf_Notch,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom	pirsf_Notch,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,pfam_Ankyrin_rpt,pfam_Notch_dom,pfam_Notch_NODP_dom,pfam_Notch_NOD_dom,pfam_EGF_extracell,pfam_DUF3454_notch,superfamily_Ankyrin_rpt-contain_dom,superfamily_Notch_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Notch_dom,smart_Ankyrin_rpt,prints_Notch_3,prints_Notch_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_EG-like_dom,pfscan_Notch_dom	-	no_errors	NOTCH3	HGNC	ENSG00000074181				96	0	0	58	7	10.7692
SUGP2	0	genome.wustl.edu	37	19	19136394	19136394	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	19	19136394	19136394	T	-	DEL	SUGP2	ENST00000337018	human	ensembl	74_37	-1	known	frame_shift_del	c.763	p.I255fs	0.000	NULL	pfam_Surp,pfam_G_patch_dom,superfamily_Surp,smart_Surp,smart_G_patch_dom,pfscan_Surp,pfscan_G_patch_dom	-	no_errors	SUGP2	HGNC	ENSG00000064607				278	1	0.358423	195	32	14.0969
ZNF30	0	genome.wustl.edu	37	19	35435665	35435665	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	19	35435665	35435665	A	-	DEL	ZNF30	ENST00000303586	human	ensembl	74_37	+1	known	frame_shift_del	c.1798	p.K601fs	0.005	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF30	HGNC	ENSG00000168661				46	0	0	20	8	28.5714
ENSG00000269553	0	genome.wustl.edu	37	19	35822750	35822750	+	RNA	DEL	A	A	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	19	35822750	35822750	A	-	DEL	ENSG00000269553	ENST00000597110	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	U62631.5	Clone_based_vega_gene	ENSG00000269553				23	0	0	10	9	47.3684
ARHGAP33	0	genome.wustl.edu	37	19	36271669	36271669	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	19	36271669	36271669	C	-	DEL	ARHGAP33	ENST00000007510	human	ensembl	74_37	+1	known	frame_shift_del	c.780	p.P262fs	0.073	superfamily_SH3_domain	pfam_RhoGAP_dom,pfam_SH3_2,pfam_SH3_domain,superfamily_Rho_GTPase_activation_prot,superfamily_SH3_domain,superfamily_Phox,smart_SH3_domain,smart_RhoGAP_dom,pfscan_SH3_domain,pfscan_RhoGAP_dom	-	no_errors	ARHGAP33	HGNC	ENSG00000004777				252	0	0	156	30	16.129
FAM98C	0	genome.wustl.edu	37	19	38899416	38899416	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	19	38899416	38899416	G	-	DEL	FAM98C	ENST00000252530	human	ensembl	74_37	+1	known	frame_shift_del	c.944	p.G317fs	1.000	pfam_Uncharacterised_FAM98	pfam_Uncharacterised_FAM98	-	no_errors	FAM98C	HGNC	ENSG00000130244				219	1	0.454545	127	17	11.8056
SARS2	0	genome.wustl.edu	37	19	39408593	39408593	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	19	39408593	39408593	G	-	DEL	SARS2	ENST00000600042	human	ensembl	74_37	-1	known	frame_shift_del	c.1024	p.R342fs	0.671	pirsf_Ser-tRNA-ligase_type_1,pfam_aa-tRNA-synt_IIb_cons-dom,prints_Ser-tRNA-ligase_type_1,pfscan_aa-tRNA-synth_II,tigrfam_Ser-tRNA-ligase_type_1	pirsf_Ser-tRNA-ligase_type_1,pfam_aa-tRNA-synt_IIb_cons-dom,superfamily_tRNA-bd_arm,prints_Ser-tRNA-ligase_type_1,pfscan_aa-tRNA-synth_II,tigrfam_Ser-tRNA-ligase_type_1	-	no_errors	SARS2	HGNC	ENSG00000104835				29	0	0	16	3	15.7895
DYRK1B	0	genome.wustl.edu	37	19	40316612	40316612	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	19	40316612	40316612	G	-	DEL	DYRK1B	ENST00000323039	human	ensembl	74_37	-1	known	frame_shift_del	c.1633	p.Q545fs	0.436	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	DYRK1B	HGNC	ENSG00000105204				122	0	0	82	5	5.74713
CIC	0	genome.wustl.edu	37	19	42797376	42797376	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	19	42797376	42797376	C	-	DEL	CIC	ENST00000575354	human	ensembl	74_37	+1	known	frame_shift_del	c.3738	p.P1248fs	0.989	NULL	pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	-	no_errors	CIC	HGNC	ENSG00000079432				20	0	0	10	3	23.0769
MEGF8	0	genome.wustl.edu	37	19	42847703	42847703	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	19	42847703	42847703	G	-	DEL	MEGF8	ENST00000251268	human	ensembl	74_37	+1	known	frame_shift_del	c.1588	p.Y532fs	1.000	NULL	pfam_CUB_dom,pfam_EGF_laminin,pfam_Plexin_repeat,superfamily_Gal_Oxase/kelch_b-propeller,superfamily_CUB_dom,superfamily_Plexin-like_fold,smart_CUB_dom,smart_EG-like_dom,smart_Plexin-like_fold,smart_EGF-like_Ca-bd_dom,smart_EGF_laminin,pfscan_CUB_dom,pfscan_EG-like_dom,pfscan_EGF_laminin	-	no_errors	MEGF8	HGNC	ENSG00000105429				90	0	0	43	6	12.2449
ZNF233	0	genome.wustl.edu	37	19	44778628	44778629	+	Frame_Shift_Del	DEL	AT	AT	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	AT	AT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	19	44778628	44778629	AT	-	DEL	ZNF233	ENST00000391958	human	ensembl	74_37	+1	known	frame_shift_del	c.1815_1816	p.Y606fs	0.000:0.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF233	HGNC	ENSG00000159915				206	0	0	124	28	18.4211
FBXO46	0	genome.wustl.edu	37	19	46215483	46215483	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	19	46215483	46215483	G	-	DEL	FBXO46	ENST00000317683	human	ensembl	74_37	-1	known	frame_shift_del	c.1271	p.P424fs	0.987	NULL	superfamily_F-box_dom,smart_F-box_dom,pfscan_F-box_dom	-	no_errors	FBXO46	HGNC	ENSG00000177051				31	0	0	16	4	20
ARHGAP35	0	genome.wustl.edu	37	19	47422590	47422590	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	19	47422590	47422590	A	-	DEL	ARHGAP35	ENST00000404338	human	ensembl	74_37	+1	known	frame_shift_del	c.658	p.K221fs	1.000	pfam_Small_GTPase,superfamily_P-loop_NTPase	pfam_RhoGAP_dom,pfam_Small_GTPase,pfam_FF_domain,superfamily_Rho_GTPase_activation_prot,superfamily_P-loop_NTPase,superfamily_FF_domain,smart_FF_domain,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP35	HGNC	ENSG00000160007				119	0	0	85	12	12.3711
BCL2L12	0	genome.wustl.edu	37	19	50173596	50173596	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	19	50173596	50173596	C	-	DEL	BCL2L12	ENST00000246785	human	ensembl	74_37	+1	known	frame_shift_del	c.805	p.P270fs	0.809	NULL	NULL	-	no_errors	BCL2L12	HGNC	ENSG00000126453				17	0	0	10	3	23.0769
MYBPC2	0	genome.wustl.edu	37	19	50957531	50957532	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	19	50957531	50957532	-	C	INS	MYBPC2	ENST00000357701	human	ensembl	74_37	+1	known	frame_shift_ins	c.1919_1920	p.E643fs	1.000:1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	MYBPC2	HGNC	ENSG00000086967				61	0	0	43	15	25.8621
SHANK1	0	genome.wustl.edu	37	19	51192559	51192559	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	19	51192559	51192559	G	-	DEL	SHANK1	ENST00000391813	human	ensembl	74_37	-1	known	frame_shift_del	c.103	p.H35fs	0.020	NULL	pfam_SAM_type1,pfam_SAM_2,pfam_PDZ,superfamily_PDZ,superfamily_SAM/pointed,smart_PDZ,smart_SAM,pfscan_PDZ,pfscan_SAM	-	no_errors	SHANK1	HGNC	ENSG00000161681				115	0	0	69	14	16.8675
LILRB1	0	genome.wustl.edu	37	19	55143507	55143509	+	In_Frame_Del	DEL	AGA	AGA	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	AGA	AGA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	19	55143507	55143509	AGA	-	DEL	LILRB1	ENST00000324602	human	ensembl	74_37	+1	known	in_frame_del	c.480_482	p.E161in_frame_del	0.006:0.004:0.002	smart_Ig_sub	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	LILRB1	HGNC	ENSG00000104972				199	0	0	137	23	14.375
ZIM3	0	genome.wustl.edu	37	19	57647457	57647457	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	19	57647457	57647457	T	-	DEL	ZIM3	ENST00000269834	human	ensembl	74_37	-1	known	frame_shift_del	c.248	p.N83fs	0.001	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZIM3	HGNC	ENSG00000141946				272	0	0	163	20	10.929
VN1R1	0	genome.wustl.edu	37	19	57967320	57967320	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	19	57967320	57967320	G	-	DEL	VN1R1	ENST00000321039	human	ensembl	74_37	-1	known	frame_shift_del	c.535	p.H179fs	0.000	pfam_Vmron_rcpt_1,pfam_TAS2_rcpt,pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_Vmron_rcpt_1,pfam_TAS2_rcpt,pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Vmron_rcpt_1	-	no_errors	VN1R1	HGNC	ENSG00000178201				120	0	0	86	11	11.3402
CD70	0	genome.wustl.edu	37	19	6586380	6586380	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	19	6586380	6586380	C	-	DEL	CD70	ENST00000245903	human	ensembl	74_37	-1	known	frame_shift_del	c.233	p.G78fs	0.022	pfam_TNF_dom,superfamily_Tumour_necrosis_fac-like_dom,smart_TNF_dom,pfscan_TNF_dom	pfam_TNF_dom,superfamily_Tumour_necrosis_fac-like_dom,smart_TNF_dom,pfscan_TNF_dom	-	no_errors	CD70	HGNC	ENSG00000125726				69	0	0	41	5	10.8696
PTPN4	0	genome.wustl.edu	37	2	120677773	120677773	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	2	120677773	120677773	T	-	DEL	PTPN4	ENST00000263708	human	ensembl	74_37	+1	known	frame_shift_del	c.957	p.F321fs	1.000	pirsf_Tyr_Pase_non-rcpt_typ-3/4	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_FERM_PH-like_C,pfam_FERM_central,pfam_FERM_N,pfam_PDZ,pfam_FERM-adjacent,superfamily_FERM_central,superfamily_PDZ,smart_Band_41_domain,smart_PDZ,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pirsf_Tyr_Pase_non-rcpt_typ-3/4,pfscan_FERM_domain,pfscan_PDZ,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt,prints_Band_41_fam,prints_Ez/rad/moesin_like	-	no_errors	PTPN4	HGNC	ENSG00000088179				290	0	0	179	29	13.9423
ENSG00000231731	0	genome.wustl.edu	37	2	128263364	128263366	+	RNA	DEL	AAA	AAA	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	AAA	AAA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	2	128263364	128263366	AAA	-	DEL	ENSG00000231731	ENST00000599001	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.233:0.319:0.309	-	-	-	no_errors	AC010976.2	Clone_based_vega_gene	ENSG00000231731				79	0	0	46	23	33.3333
CCDC74B	0	genome.wustl.edu	37	2	130897852	130897852	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	2	130897852	130897852	G	-	DEL	CCDC74B	ENST00000392984	human	ensembl	74_37	-1	known	frame_shift_del	c.1082	p.P361fs	0.000	NULL	NULL	-	no_errors	CCDC74B	HGNC	ENSG00000152076				271	1	0.367647	206	45	17.9283
ACVR2A	0	genome.wustl.edu	37	2	148683686	148683686	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	2	148683686	148683686	A	-	DEL	ACVR2A	ENST00000241416	human	ensembl	74_37	+1	known	frame_shift_del	c.1303	p.K437fs	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Activin_rcpt,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_TGFB_receptor	-	no_errors	ACVR2A	HGNC	ENSG00000121989				263	0	0	94	55	36.9128
EPC2	0	genome.wustl.edu	37	2	149447829	149447829	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	2	149447829	149447829	A	-	DEL	EPC2	ENST00000258484	human	ensembl	74_37	+1	known	frame_shift_del	c.200	p.E70fs	1.000	pfam_Enhancer_polycomb-like_N	pfam_Enhancer_polycomb_C,pfam_Enhancer_polycomb-like_N	-	no_errors	EPC2	HGNC	ENSG00000135999				114	0	0	73	23	23.9583
RIF1	0	genome.wustl.edu	37	2	152320541	152320541	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	2	152320541	152320541	A	-	DEL	RIF1	ENST00000243326	human	ensembl	74_37	+1	known	frame_shift_del	c.4507	p.K1505fs	0.001	NULL	pfam_Rif1_N,superfamily_ARM-type_fold	-	no_errors	RIF1	HGNC	ENSG00000080345				175	1	0.568182	93	13	12.2642
SNORA70F	0	genome.wustl.edu	37	2	165544246	165544246	+	RNA	DEL	C	C	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	2	165544246	165544246	C	-	DEL	SNORA70F	ENST00000384142	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.314	-	-	-	no_errors	SNORA70F	HGNC	ENSG00000206869				22	0	0	12	2	14.2857
COBLL1	0	genome.wustl.edu	37	2	165551296	165551296	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	2	165551296	165551296	A	-	DEL	COBLL1	ENST00000194871	human	ensembl	74_37	-1	known	frame_shift_del	c.2921	p.L974fs	0.972	NULL	pfam_Cordon-bleu_ubiquitin_domain,pfscan_WH2_dom	-	no_errors	COBLL1	HGNC	ENSG00000082438				97	0	0	53	17	24.2857
NOSTRIN	0	genome.wustl.edu	37	2	169699563	169699563	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	2	169699563	169699563	A	-	DEL	NOSTRIN	ENST00000444448	human	ensembl	74_37	+1	known	frame_shift_del	c.566	p.N191fs	1.000	NULL	pfam_SH3_domain,pfam_SH3_2,pfam_FCH_dom,superfamily_SH3_domain,superfamily_HR1_rho-bd,smart_SH3_domain,pfscan_FCH_dom,pfscan_SH3_domain,prints_SH3_domain	-	no_errors	NOSTRIN	HGNC	ENSG00000163072				109	0	0	61	13	17.5676
PPIG	0	genome.wustl.edu	37	2	170493804	170493804	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	2	170493804	170493804	A	-	DEL	PPIG	ENST00000260970	human	ensembl	74_37	+1	known	frame_shift_del	c.2036	p.K681fs	0.885	NULL	pfam_Cyclophilin-like_PPIase_dom,superfamily_Cyclophilin-like_PPIase_dom,pfscan_Cyclophilin-like_PPIase_dom,prints_Cyclophilin-like_PPIase_dom	-	no_errors	PPIG	HGNC	ENSG00000138398				89	0	0	51	11	17.7419
DYNC1I2	0	genome.wustl.edu	37	2	172549339	172549339	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	2	172549339	172549339	A	-	DEL	DYNC1I2	ENST00000397119	human	ensembl	74_37	+1	known	frame_shift_del	c.161	p.R57fs	1.000	NULL	pfam_Dynein_IC_1/2,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DYNC1I2	HGNC	ENSG00000077380				20	0	0	19	5	20.8333
CIR1	0	genome.wustl.edu	37	2	175213713	175213713	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	2	175213713	175213713	T	-	DEL	CIR1	ENST00000342016	human	ensembl	74_37	-1	known	frame_shift_del	c.865	p.I289fs	0.130	NULL	pfam_CIR_N_dom,superfamily_Znf_CCHC	-	no_errors	CIR1	HGNC	ENSG00000138433				131	0	0	104	18	14.7541
TTN	0	genome.wustl.edu	37	2	179485716	179485716	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	2	179485716	179485716	T	-	DEL	TTN	ENST00000342992	human	ensembl	74_37	-1	known	frame_shift_del	c.37917	p.K12639fs	1.000	superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				87	0	0	47	8	14.5455
TMEFF2	0	genome.wustl.edu	37	2	193049182	193049183	+	Frame_Shift_Del	DEL	CA	CA	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	CA	CA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	2	193049182	193049183	CA	-	DEL	TMEFF2	ENST00000272771	human	ensembl	74_37	-1	known	frame_shift_del	c.310_309	p.C103fs	1.000:1.000	pfam_Kazal_dom,smart_Kazal_dom	pfam_Kazal_dom,smart_Kazal_dom,pfscan_EG-like_dom	-	no_errors	TMEFF2	HGNC	ENSG00000144339				89	0	0	49	5	9.25926
DNAH7	0	genome.wustl.edu	37	2	196788374	196788374	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	2	196788374	196788374	T	-	DEL	DNAH7	ENST00000312428	human	ensembl	74_37	-1	known	frame_shift_del	c.3770	p.N1257fs	0.000	NULL	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,superfamily_P-loop_NTPase,superfamily_Signal_recog_particle_SRP9/14,smart_AAA+_ATPase,pfscan_EF_hand_dom	-	no_errors	DNAH7	HGNC	ENSG00000118997				124	1	0.8	76	16	17.3913
DNAH7	0	genome.wustl.edu	37	2	196866535	196866535	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	2	196866535	196866535	T	-	DEL	DNAH7	ENST00000312428	human	ensembl	74_37	-1	known	frame_shift_del	c.1037	p.K346fs	1.000	NULL	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,superfamily_P-loop_NTPase,superfamily_Signal_recog_particle_SRP9/14,smart_AAA+_ATPase,pfscan_EF_hand_dom	-	no_errors	DNAH7	HGNC	ENSG00000118997				105	0	0	60	13	17.8082
CD28	0	genome.wustl.edu	37	2	204591543	204591543	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	2	204591543	204591543	A	-	DEL	CD28	ENST00000324106	human	ensembl	74_37	+1	known	frame_shift_del	c.240	p.T82fs	0.053	pfam_Ig_V-set,smart_Ig_V-set_subgr	pfam_Ig_V-set,smart_Ig_V-set_subgr,prints_CD28	-	no_errors	CD28	HGNC	ENSG00000178562				179	0	0	95	21	18.1034
PARD3B	0	genome.wustl.edu	37	2	205990401	205990401	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	2	205990401	205990401	G	-	DEL	PARD3B	ENST00000406610	human	ensembl	74_37	+1	known	frame_shift_del	c.1374	p.E460fs	0.999	pfam_PDZ,superfamily_PDZ,smart_PDZ	pfam_DUF3534,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	PARD3B	HGNC	ENSG00000116117				229	0	0	136	28	17.0732
ZDBF2	0	genome.wustl.edu	37	2	207174428	207174428	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	2	207174428	207174428	A	-	DEL	ZDBF2	ENST00000374423	human	ensembl	74_37	+1	known	frame_shift_del	c.5176	p.K1728fs	0.000	NULL	pfam_Znf_DBF,smart_Znf_DBF	-	no_errors	ZDBF2	HGNC	ENSG00000204186				65	0	0	50	6	10.7143
KANSL1L	0	genome.wustl.edu	37	2	210887680	210887680	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	2	210887680	210887680	T	-	DEL	KANSL1L	ENST00000281772	human	ensembl	74_37	-1	known	frame_shift_del	c.2957	p.N986fs	0.980	NULL	NULL	-	no_errors	KANSL1L	HGNC	ENSG00000144445				88	0	0	48	15	23.8095
TNS1	0	genome.wustl.edu	37	2	218683042	218683043	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	2	218683042	218683043	-	G	INS	TNS1	ENST00000171887	human	ensembl	74_37	-1	known	frame_shift_ins	c.3701_3700	p.Q1234fs	0.324:1.000	NULL	pfam_PTB,pfam_Tensin_phosphatase_C2-dom,pfam_SH2,superfamily_C2_dom,smart_Tyr_Pase_cat,smart_SH2,smart_PTB/PI_dom,pfscan_SH2,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	TNS1	HGNC	ENSG00000079308				41	0	0	29	5	14.7059
MAPRE3	0	genome.wustl.edu	37	2	27248479	27248479	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	2	27248479	27248479	A	-	DEL	MAPRE3	ENST00000233121	human	ensembl	74_37	+1	known	frame_shift_del	c.498	p.N168fs	1.000	NULL	pfam_EB1_C,pfam_CH-domain,superfamily_CH-domain,superfamily_EB1_C,pfscan_CH-domain	-	no_errors	MAPRE3	HGNC	ENSG00000084764				160	0	0	96	16	14.2857
C2orf71	0	genome.wustl.edu	37	2	29294162	29294162	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	2	29294162	29294162	G	-	DEL	C2orf71	ENST00000331664	human	ensembl	74_37	-1	known	frame_shift_del	c.2966	p.P989fs	0.000	NULL	NULL	-	no_errors	C2orf71	HGNC	ENSG00000179270				117	0	0	93	14	13.0841
RMDN2	0	genome.wustl.edu	37	2	38178783	38178783	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	2	38178783	38178783	T	-	DEL	RMDN2	ENST00000234195	human	ensembl	74_37	+1	known	frame_shift_del	c.425	p.F144fs	0.000	NULL	NULL	-	no_errors	RMDN2	HGNC	ENSG00000115841				177	0	0	87	15	14.7059
CDKL4	0	genome.wustl.edu	37	2	39456572	39456572	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	2	39456572	39456572	T	-	DEL	CDKL4	ENST00000378803	human	ensembl	74_37	-1	known	frame_shift_del	c.102	p.K34fs	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	CDKL4	HGNC	ENSG00000205111				179	0	0	111	32	22.3776
SLC8A1	0	genome.wustl.edu	37	2	40656343	40656343	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	2	40656343	40656343	T	-	DEL	SLC8A1	ENST00000332839	human	ensembl	74_37	-1	known	frame_shift_del	c.1078	p.S360fs	1.000	pfscan_DnaJ_domain,tigrfam_Na_Ca_Ex	pfam_NaCa_Exmemb,pfam_Calx_beta,smart_Calx_beta,pfscan_DnaJ_domain,prints_Na_Ca_Ex,prints_NaCa_exhngr1,tigrfam_Na_Ca_Ex	-	no_errors	SLC8A1	HGNC	ENSG00000183023				283	1	0.352113	166	38	18.6275
RHOQ	0	genome.wustl.edu	37	2	46808174	46808174	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	2	46808174	46808174	A	-	DEL	RHOQ	ENST00000238738	human	ensembl	74_37	+1	known	frame_shift_del	c.570	p.R193fs	1.000	NULL	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RHOQ	HGNC	ENSG00000119729				166	0	0	118	17	12.5926
GPR75	0	genome.wustl.edu	37	2	54081175	54081175	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	2	54081175	54081175	G	-	DEL	GPR75	ENST00000394705	human	ensembl	74_37	-1	known	frame_shift_del	c.719	p.P240fs	0.992	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	GPR75	HGNC	ENSG00000119737				128	0	0	90	15	14.2857
CCDC88A	0	genome.wustl.edu	37	2	55561645	55561646	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	2	55561645	55561646	-	T	INS	CCDC88A	ENST00000436346	human	ensembl	74_37	-1	known	frame_shift_ins	c.2312_2311	p.T771fs	1.000:1.000	superfamily_Prefoldin	pfam_Hook-related_fam,superfamily_Prefoldin,superfamily_t-SNARE	-	no_errors	CCDC88A	HGNC	ENSG00000115355				188	0	0	82	14	14.5833
CCDC88A	0	genome.wustl.edu	37	2	55561755	55561755	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	2	55561755	55561755	T	-	DEL	CCDC88A	ENST00000436346	human	ensembl	74_37	-1	known	frame_shift_del	c.2202	p.E735fs	1.000	NULL	pfam_Hook-related_fam,superfamily_Prefoldin,superfamily_t-SNARE	-	no_errors	CCDC88A	HGNC	ENSG00000115355				217	0	0	111	14	11.2
C2orf42	0	genome.wustl.edu	37	2	70392682	70392682	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	2	70392682	70392682	T	-	DEL	C2orf42	ENST00000264434	human	ensembl	74_37	-1	known	frame_shift_del	c.1230	p.K410fs	1.000	NULL	NULL	-	no_errors	C2orf42	HGNC	ENSG00000115998				143	0	0	93	15	13.8889
DSTN	0	genome.wustl.edu	37	20	17581680	17581680	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	20	17581680	17581680	T	-	DEL	DSTN	ENST00000246069	human	ensembl	74_37	+1	known	frame_shift_del	c.301	p.L103fs	1.000	pfam_Actin-bd_cofilin/tropomyosin,smart_Actin-bd_cofilin/tropomyosin,prints_ADF/Cofilin/Destrin	pfam_Actin-bd_cofilin/tropomyosin,smart_Actin-bd_cofilin/tropomyosin,prints_ADF/Cofilin/Destrin	-	no_errors	DSTN	HGNC	ENSG00000125868				140	1	0.70922	100	18	15.2542
BPIFB4	0	genome.wustl.edu	37	20	31671214	31671214	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	20	31671214	31671214	C	-	DEL	BPIFB4	ENST00000375483	human	ensembl	74_37	+1	known	frame_shift_del	c.211	p.P73fs	0.030	NULL	pfam_Lipid-bd_serum_glycop_N,pfam_Lipid-bd_serum_glycop_C,superfamily_Bactericidal_perm-incr_a/b_dom,smart_Lipid-bd_serum_glycop_N,smart_Lipid-bd_serum_glycop_C	-	no_errors	BPIFB4	HGNC	ENSG00000186191				221	1	0.45045	131	28	17.6101
SNX21	0	genome.wustl.edu	37	20	44469907	44469908	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	20	44469907	44469908	-	C	INS	SNX21	ENST00000491381	human	ensembl	74_37	+1	known	frame_shift_ins	c.1077_1078	p.S361fs	0.996:1.000	NULL	pfam_Phox,pfam_TPR_1,superfamily_Phox,smart_Phox,pfscan_Phox	-	no_errors	SNX21	HGNC	ENSG00000124104				285	1	0.34965	197	34	14.7186
SPATA25	0	genome.wustl.edu	37	20	44515248	44515248	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	20	44515248	44515248	C	-	DEL	SPATA25	ENST00000372519	human	ensembl	74_37	-1	known	frame_shift_del	c.592	p.A198fs	0.068	NULL	NULL	-	no_errors	SPATA25	HGNC	ENSG00000149634				199	0	0	129	20	13.4228
SULF2	0	genome.wustl.edu	37	20	46290538	46290538	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	20	46290538	46290538	G	-	DEL	SULF2	ENST00000359930	human	ensembl	74_37	-1	known	frame_shift_del	c.2473	p.R825fs	1.000	pirsf_Extracellular_sulfatase	pfam_Sulfatase,pfam_Extracellular_sulfatase_C,superfamily_Alkaline_phosphatase_core,pirsf_Extracellular_sulfatase	-	no_errors	SULF2	HGNC	ENSG00000196562				262	0	0	186	21	10.1449
STAU1	0	genome.wustl.edu	37	20	47739699	47739699	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	20	47739699	47739699	T	-	DEL	STAU1	ENST00000371856	human	ensembl	74_37	-1	known	frame_shift_del	c.896	p.K299fs	1.000	pfam_dsRNA-bd_dom,smart_dsRNA-bd_dom,pfscan_dsRNA-bd_dom	pfam_dsRNA-bd_dom,smart_dsRNA-bd_dom,pfscan_dsRNA-bd_dom	-	no_errors	STAU1	HGNC	ENSG00000124214				88	0	0	56	17	23.2877
DDX27	0	genome.wustl.edu	37	20	47860465	47860465	+	RNA	DEL	A	A	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	20	47860465	47860465	A	-	DEL	DDX27	ENST00000471144	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.005	-	-	-	no_errors	DDX27	HGNC	ENSG00000124228				28	0	0	13	8	38.0952
FAM65C	0	genome.wustl.edu	37	20	49203727	49203727	+	RNA	DEL	A	A	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	20	49203727	49203727	A	-	DEL	FAM65C	ENST00000462842	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	FAM65C	HGNC	ENSG00000042062				47	0	0	28	8	22.2222
ADNP	0	genome.wustl.edu	37	20	49508204	49508204	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	20	49508204	49508204	T	-	DEL	ADNP	ENST00000349014	human	ensembl	74_37	-1	known	frame_shift_del	c.3047	p.K1016fs	1.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	ADNP	HGNC	ENSG00000101126				214	1	0.465116	149	33	18.1319
ADNP	0	genome.wustl.edu	37	20	49509399	49509400	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	20	49509399	49509400	-	T	INS	ADNP	ENST00000349014	human	ensembl	74_37	-1	known	frame_shift_ins	c.1852_1851	p.D617fs	1.000:0.985	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	ADNP	HGNC	ENSG00000101126				470	0	0	293	83	22.0745
CASS4	0	genome.wustl.edu	37	20	55012423	55012423	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	20	55012423	55012423	C	-	DEL	CASS4	ENST00000360314	human	ensembl	74_37	+1	known	frame_shift_del	c.240	p.P82fs	0.000	superfamily_SH3_domain	pfam_Serine_rich,pfam_CAS_DUF3513,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	CASS4	HGNC	ENSG00000087589				92	0	0	60	11	15.493
ZNF831	0	genome.wustl.edu	37	20	57769140	57769140	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	20	57769140	57769140	G	-	DEL	ZNF831	ENST00000371030	human	ensembl	74_37	+1	novel	frame_shift_del	c.3066	p.D1025fs	0.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF831	HGNC	ENSG00000124203				66	0	0	28	15	34.8837
CDH26	0	genome.wustl.edu	37	20	58587784	58587784	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	20	58587784	58587784	A	-	DEL	CDH26	ENST00000348616	human	ensembl	74_37	+1	known	frame_shift_del	c.2498	p.*833fs	0.000	NULL	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH26	HGNC	ENSG00000124215				77	0	0	50	13	20.6349
BMP2	0	genome.wustl.edu	37	20	6759174	6759174	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	20	6759174	6759174	C	-	DEL	BMP2	ENST00000378827	human	ensembl	74_37	+1	known	frame_shift_del	c.629	p.A212fs	1.000	pfam_TGF-b_N	pfam_TGF-b_N,pfam_TGF-b_C,smart_TGF-b_C,prints_Inhibin_asu	-	no_errors	BMP2	HGNC	ENSG00000125845				78	0	0	52	7	11.8644
TPTE	0	genome.wustl.edu	37	21	10944697	10944697	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	21	10944697	10944697	A	-	DEL	TPTE	ENST00000361285	human	ensembl	74_37	-1	known	frame_shift_del	c.537	p.F179fs	0.335	pfam_Ion_trans_dom	pfam_Tensin_phosphatase_C2-dom,pfam_Dual-sp_phosphatase_cat-dom,pfam_Ion_trans_dom,superfamily_C2_dom,pfscan_Tyr/Dual-sp_Pase,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	TPTE	HGNC	ENSG00000166157				312	1	0.319489	197	22	10.0457
PAXBP1	0	genome.wustl.edu	37	21	34131467	34131467	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	21	34131467	34131467	C	-	DEL	PAXBP1	ENST00000331923	human	ensembl	74_37	-1	known	frame_shift_del	c.1307	p.G436fs	1.000	NULL	pfam_GCFC_dom	-	no_errors	PAXBP1	HGNC	ENSG00000159086				454	0	0	233	34	12.7341
TTC3	0	genome.wustl.edu	37	21	38524243	38524243	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	21	38524243	38524243	A	-	DEL	TTC3	ENST00000354749	human	ensembl	74_37	+1	known	frame_shift_del	c.2327	p.E779fs	1.000	NULL	pfam_Znf_C3HC4_RING-type,superfamily_DEATH-like_dom,smart_TPR_repeat,smart_Znf_RING,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_Znf_RING	-	no_errors	TTC3	HGNC	ENSG00000182670				94	0	0	61	16	20.7792
CCT8L2	0	genome.wustl.edu	37	22	17073164	17073165	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	22	17073164	17073165	-	T	INS	CCT8L2	ENST00000359963	human	ensembl	74_37	-1	known	frame_shift_ins	c.277_276	p.A92fs	0.107:0.106	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1,superfamily_GroEL-like_apical_dom,prints_Chaperone_TCP-1	-	no_errors	CCT8L2	HGNC	ENSG00000198445				83	0	0	39	7	15.2174
ANKRD62P1-PARP4P3	0	genome.wustl.edu	37	22	17140438	17140438	+	RNA	DEL	T	T	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	22	17140438	17140438	T	-	DEL	ANKRD62P1-PARP4P3	ENST00000456726	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.042	-	-	-	no_errors	ANKRD62P1-PARP4P3	HGNC	ENSG00000189295				100	0	0	58	12	17.1429
MICAL3	0	genome.wustl.edu	37	22	18367052	18367052	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	22	18367052	18367052	G	-	DEL	MICAL3	ENST00000207726	human	ensembl	74_37	-1	known	frame_shift_del	c.2314	p.R772fs	0.998	NULL	pfam_CH-domain,pfam_CAMSAP_CH,pfam_Znf_LIM,pfam_mOase_FAD-bd,superfamily_CH-domain,smart_CH-domain,smart_Znf_LIM,pfscan_CH-domain,pfscan_Znf_LIM,prints_Rng_hydrolase-like	-	no_errors	MICAL3	HGNC	ENSG00000243156				46	0	0	36	9	20
SPECC1L	0	genome.wustl.edu	37	22	24726351	24726351	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	22	24726351	24726351	A	-	DEL	SPECC1L	ENST00000314328	human	ensembl	74_37	+1	known	frame_shift_del	c.2348	p.N785fs	1.000	NULL	pfam_CH-domain,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_bHLH_dom,smart_CH-domain,pfscan_CH-domain	-	no_errors	SPECC1L	HGNC	ENSG00000100014				313	0	0	187	30	13.8249
OSBP2	0	genome.wustl.edu	37	22	31289119	31289120	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	22	31289119	31289120	-	C	INS	OSBP2	ENST00000332585	human	ensembl	74_37	+1	known	frame_shift_ins	c.1880_1881	p.S630fs	1.000:1.000	pfam_Oxysterol-bd	pfam_Oxysterol-bd,pfam_Pleckstrin_homology,superfamily_DNA-bd_dom_put,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	OSBP2	HGNC	ENSG00000184792				75	0	0	48	6	11.1111
LIMK2	0	genome.wustl.edu	37	22	31672777	31672777	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	22	31672777	31672777	C	-	DEL	LIMK2	ENST00000340552	human	ensembl	74_37	+1	putative	frame_shift_del	c.1712	p.575fs	0.996	smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_PP1_inhibitor,pfam_PDZ,pfam_Znf_LIM,superfamily_Kinase-like_dom,superfamily_PP1_inhibitor,superfamily_PDZ,smart_Znf_LIM,smart_PDZ,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Znf_LIM,pfscan_PDZ,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	LIMK2	HGNC	ENSG00000182541				23	0	0	12	5	29.4118
BPIFC	0	genome.wustl.edu	37	22	32831829	32831829	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	22	32831829	32831829	G	-	DEL	BPIFC	ENST00000300399	human	ensembl	74_37	-1	known	frame_shift_del	c.786	p.F263fs	0.148	pfam_Lipid-bd_serum_glycop_C,superfamily_Bactericidal_perm-incr_a/b_dom	pfam_Lipid-bd_serum_glycop_N,pfam_Lipid-bd_serum_glycop_C,superfamily_Bactericidal_perm-incr_a/b_dom,smart_Lipid-bd_serum_glycop_N,smart_Lipid-bd_serum_glycop_C	-	no_errors	BPIFC	HGNC	ENSG00000184459				154	0	0	77	8	9.41176
SYN3	0	genome.wustl.edu	37	22	32924871	32924872	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	22	32924871	32924872	-	G	INS	SYN3	ENST00000332840	human	ensembl	74_37	-1	known	frame_shift_ins	c.1220_1219	p.L407fs	1.000:1.000	NULL	pfam_Synapsin_ATP-bd_dom,pfam_Synapsin_pre-ATP-grasp_dom,pfam_Synapsin_P_site,pfam_ATP-grasp_RimK-type,superfamily_PreATP-grasp_dom,prints_Synapsin	-	no_errors	SYN3	HGNC	ENSG00000185666				89	0	0	40	9	18.3673
FAM109B	0	genome.wustl.edu	37	22	42473377	42473377	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	22	42473377	42473377	G	-	DEL	FAM109B	ENST00000321753	human	ensembl	74_37	+1	known	frame_shift_del	c.80	p.G29fs	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	FAM109B	HGNC	ENSG00000177096				206	1	0.483092	105	24	18.6047
TSPO	0	genome.wustl.edu	37	22	43557100	43557101	+	Frame_Shift_Del	DEL	AG	AG	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	22	43557100	43557101	AG	-	DEL	TSPO	ENST00000329563	human	ensembl	74_37	+1	known	frame_shift_del	c.225_226	p.K77fs	0.040:0.980	pfam_TspO_MBR,pirsf_TspO_MBR	pfam_TspO_MBR,pirsf_TspO_MBR	-	no_errors	TSPO	HGNC	ENSG00000100300				120	0	0	64	9	12.3288
PVRL3	0	genome.wustl.edu	37	3	110852822	110852822	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	3	110852822	110852822	A	-	DEL	PVRL3	ENST00000485303	human	ensembl	74_37	+1	known	frame_shift_del	c.1410	p.E473fs	0.999	NULL	pfam_CD80_C2-set,pfam_Ig_V-set,pfam_Ig_I-set,smart_Ig_sub,pfscan_Ig-like_dom	-	no_errors	PVRL3	HGNC	ENSG00000177707				79	0	0	41	17	29.3103
EAF2	0	genome.wustl.edu	37	3	121573634	121573634	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	3	121573634	121573634	A	-	DEL	EAF2	ENST00000273668	human	ensembl	74_37	+1	known	frame_shift_del	c.302	p.K102fs	1.000	pfam_Tscrpt_elong_fac_Eaf_N	pfam_Tscrpt_elong_fac_Eaf_N	-	no_errors	EAF2	HGNC	ENSG00000145088				118	0	0	86	10	10.4167
ABTB1	0	genome.wustl.edu	37	3	127396115	127396115	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	3	127396115	127396115	C	-	DEL	ABTB1	ENST00000232744	human	ensembl	74_37	+1	known	frame_shift_del	c.748	p.E252fs	1.000	NULL	pfam_BTB_POZ,pfam_Ankyrin_rpt,superfamily_BTB/POZ_fold,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_BTB/POZ-like,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_BTB/POZ-like	-	no_errors	ABTB1	HGNC	ENSG00000114626				21	0	0	16	4	20
DNAJC13	0	genome.wustl.edu	37	3	132224254	132224254	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	3	132224254	132224254	A	-	DEL	DNAJC13	ENST00000260818	human	ensembl	74_37	+1	known	frame_shift_del	c.4993	p.G1667fs	1.000	superfamily_ARM-type_fold	pfam_DnaJ_domain,superfamily_ARM-type_fold,superfamily_GYF,smart_DnaJ_domain,pfscan_DnaJ_domain	-	no_errors	DNAJC13	HGNC	ENSG00000138246				43	0	0	39	6	13.3333
ACKR4	0	genome.wustl.edu	37	3	132319752	132319752	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	3	132319752	132319752	C	-	DEL	ACKR4	ENST00000249887	human	ensembl	74_37	+1	known	frame_shift_del	c.511	p.Q172fs	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Chemokine_CCRL1,prints_GPCR_Rhodpsn,prints_Chemokine_rcpt,prints_Chemokine_CXCR4	-	no_errors	ACKR4	HGNC	ENSG00000129048				86	0	0	66	16	19.5122
SLC35G2	0	genome.wustl.edu	37	3	136573873	136573873	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	3	136573873	136573873	C	-	DEL	SLC35G2	ENST00000393079	human	ensembl	74_37	+1	known	frame_shift_del	c.571	p.S192fs	1.000	pfam_DMT	pfam_DMT	-	no_errors	SLC35G2	HGNC	ENSG00000168917				236	0	0	160	32	16.6667
DZIP1L	0	genome.wustl.edu	37	3	137811279	137811279	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	3	137811279	137811279	T	-	DEL	DZIP1L	ENST00000327532	human	ensembl	74_37	-1	known	frame_shift_del	c.816	p.K272fs	0.005	NULL	pfscan_Znf_C2H2	-	no_errors	DZIP1L	HGNC	ENSG00000158163				248	0	0	172	25	12.6904
DBR1	0	genome.wustl.edu	37	3	137880738	137880739	+	In_Frame_Ins	INS	-	-	CAT			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	3	137880738	137880739	-	CAT	INS	DBR1	ENST00000260803	human	ensembl	74_37	-1	known	in_frame_ins	c.1628_1627	p.543in_frame_insD	0.000:0.038	NULL	pfam_DBR1_C,pfam_PEstase_dom	-	no_errors	DBR1	HGNC	ENSG00000138231				257	0	0	174	35	16.7464
ENSG00000244327	0	genome.wustl.edu	37	3	142184164	142184164	+	RNA	DEL	A	A	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	3	142184164	142184164	A	-	DEL	ENSG00000244327	ENST00000460977	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	RP11-383G6.3	Clone_based_vega_gene	ENSG00000244327				22	0	0	17	16	48.4848
NR2C2	0	genome.wustl.edu	37	3	15084406	15084406	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	3	15084406	15084406	T	-	DEL	NR2C2	ENST00000323373	human	ensembl	74_37	+1	known	frame_shift_del	c.1739	p.F582fs	1.000	pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Znf_hrmn_rcpt,prints_Str_hrmn_rcpt	-	no_errors	NR2C2	HGNC	ENSG00000177463				75	0	0	43	8	15.6863
B3GNT5	0	genome.wustl.edu	37	3	182987655	182987655	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	3	182987655	182987655	T	-	DEL	B3GNT5	ENST00000326505	human	ensembl	74_37	+1	known	frame_shift_del	c.69	p.L25fs	0.998	NULL	pfam_Glyco_trans_31,superfamily_Luciferase-like_dom	-	no_errors	B3GNT5	HGNC	ENSG00000176597				194	0	0	138	28	16.8675
ABCC5	0	genome.wustl.edu	37	3	183665257	183665257	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	3	183665257	183665257	A	-	DEL	ABCC5	ENST00000334444	human	ensembl	74_37	-1	known	frame_shift_del	c.3269	p.L1090fs	1.000	pfam_ABC_transptr_TM_dom,superfamily_ABC1_TM_dom,pfscan_ABC1_TM_dom	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC1_TM_dom,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom	-	no_errors	ABCC5	HGNC	ENSG00000114770				51	0	0	54	14	20.5882
FETUB	0	genome.wustl.edu	37	3	186362544	186362545	+	Frame_Shift_Del	DEL	AA	AA	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	3	186362544	186362545	AA	-	DEL	FETUB	ENST00000265029	human	ensembl	74_37	+1	known	frame_shift_del	c.429_430	p.K146fs	0.854:0.006	NULL	pfam_Prot_inh_cystat,smart_Prot_inh_cystat	-	no_errors	FETUB	HGNC	ENSG00000090512				298	0	0	162	73	31.0638
PAK2	0	genome.wustl.edu	37	3	196537509	196537509	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	3	196537509	196537509	A	-	DEL	PAK2	ENST00000327134	human	ensembl	74_37	+1	known	frame_shift_del	c.758	p.I255fs	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_CRIB_dom,superfamily_Kinase-like_dom,superfamily_WASP_C,smart_CRIB_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_CRIB_dom,pfscan_Prot_kinase_dom	-	no_errors	PAK2	HGNC	ENSG00000180370				125	0	0	75	11	12.7907
PIGZ	0	genome.wustl.edu	37	3	196674360	196674360	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	3	196674360	196674360	G	-	DEL	PIGZ	ENST00000412723	human	ensembl	74_37	-1	known	frame_shift_del	c.1408	p.R470fs	0.997	NULL	pfam_GPI_mannosylTrfase	-	no_errors	PIGZ	HGNC	ENSG00000119227				93	0	0	88	15	14.5631
FYTTD1	0	genome.wustl.edu	37	3	197505337	197505338	+	Splice_Site	INS	-	-	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	3	197505337	197505338	-	A	INS	FYTTD1	ENST00000241502	human	ensembl	74_37	+1	known	splice_site_ins	c.858+2_858+1	e8+2	1.000:0.999	-	-	-	no_errors	FYTTD1	HGNC	ENSG00000122068				105	0	0	90	5	5.26316
ENSG00000232783	0	genome.wustl.edu	37	3	197838274	197838276	+	RNA	DEL	AAA	AAA	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	AAA	AAA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	3	197838274	197838276	AAA	-	DEL	ENSG00000232783	ENST00000411596	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001:0.001:0.001	-	-	-	no_errors	AC073135.3	Clone_based_vega_gene	ENSG00000232783				36	0	0	35	5	12.5
SGOL1	0	genome.wustl.edu	37	3	20215937	20215939	+	In_Frame_Del	DEL	GTT	GTT	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	GTT	GTT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	3	20215937	20215939	GTT	-	DEL	SGOL1	ENST00000263753	human	ensembl	74_37	-1	known	in_frame_del	c.1086_1084	p.N362in_frame_del	0.000:0.000:0.000	NULL	pfam_Shugoshin_N,pfam_Shugoshin_C	-	no_errors	SGOL1	HGNC	ENSG00000129810				174	0	0	135	16	10.596
HMGB1P5	0	genome.wustl.edu	37	3	22423968	22423968	+	RNA	DEL	T	T	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	3	22423968	22423968	T	-	DEL	HMGB1P5	ENST00000451497	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	HMGB1P5	HGNC	ENSG00000132967				75	0	0	44	20	31.25
CLASP2	0	genome.wustl.edu	37	3	33686903	33686903	+	RNA	DEL	A	A	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	3	33686903	33686903	A	-	DEL	CLASP2	ENST00000476433	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.963	-	-	-	no_errors	CLASP2	HGNC	ENSG00000163539				45	0	0	40	17	29.8246
ENTPD3-AS1	0	genome.wustl.edu	37	3	40433741	40433741	+	RNA	DEL	C	C	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	3	40433741	40433741	C	-	DEL	ENTPD3-AS1	ENST00000425156	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ENTPD3-AS1	HGNC	ENSG00000223797				23	0	0	23	5	17.8571
SETD2	0	genome.wustl.edu	37	3	47084146	47084146	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	3	47084146	47084146	G	-	DEL	SETD2	ENST00000409792	human	ensembl	74_37	-1	known	frame_shift_del	c.7143	p.S2382fs	0.013	superfamily_WW_dom	pfam_SRI,pfam_SET_dom,pfam_WW_dom,superfamily_WW_dom,superfamily_Ferritin-like_SF,smart_AWS,smart_SET_dom,smart_Post-SET_dom,smart_WW_dom,pfscan_AWS,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_WW_dom	-	no_errors	SETD2	HGNC	ENSG00000181555				243	0	0	192	30	13.5135
KIF9	0	genome.wustl.edu	37	3	47316957	47316957	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	3	47316957	47316957	T	-	DEL	KIF9	ENST00000265529	human	ensembl	74_37	-1	known	frame_shift_del	c.117	p.D40fs	0.993	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF9	HGNC	ENSG00000088727				152	0	0	108	29	21.1679
PTPN23	0	genome.wustl.edu	37	3	47452588	47452588	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	3	47452588	47452588	C	-	DEL	PTPN23	ENST00000265562	human	ensembl	74_37	+1	known	frame_shift_del	c.3300	p.P1102fs	0.048	NULL	pfam_BRO1_dom,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_BRO1_dom,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPN23	HGNC	ENSG00000076201				39	0	0	27	7	20.5882
P4HTM	0	genome.wustl.edu	37	3	49043192	49043193	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	3	49043192	49043193	-	C	INS	P4HTM	ENST00000343546	human	ensembl	74_37	+1	known	frame_shift_ins	c.1239_1240	p.L415fs	0.017:0.124	smart_Pro_4_hyd_alph	pfam_Oxoglu/Fe-dep_dioxygenase,smart_Pro_4_hyd_alph	-	no_errors	P4HTM	HGNC	ENSG00000178467				161	0	0	128	12	8.57143
C3orf62	0	genome.wustl.edu	37	3	49314258	49314258	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	3	49314258	49314258	T	-	DEL	C3orf62	ENST00000343010	human	ensembl	74_37	-1	known	frame_shift_del	c.48	p.K16fs	1.000	NULL	NULL	-	no_errors	C3orf62	HGNC	ENSG00000188315				122	0	0	78	29	27.1028
RNF123	0	genome.wustl.edu	37	3	49738978	49738980	+	In_Frame_Del	DEL	GGA	GGA	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	GGA	GGA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	3	49738978	49738980	GGA	-	DEL	RNF123	ENST00000327697	human	ensembl	74_37	+1	known	in_frame_del	c.1332_1334	p.E446in_frame_del	1.000:1.000:1.000	NULL	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl_sf,smart_SPla/RYanodine_receptor_subgr,smart_Znf_RING,pfscan_B30.2/SPRY,pfscan_Znf_RING	-	no_errors	RNF123	HGNC	ENSG00000164068				190	0	0	150	15	9.09091
RBM6	0	genome.wustl.edu	37	3	50005144	50005145	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	3	50005144	50005145	-	G	INS	RBM6	ENST00000266022	human	ensembl	74_37	+1	known	frame_shift_ins	c.286_287	p.D99fs	1.000:1.000	NULL	pfam_G_patch_dom,smart_RRM_dom,smart_G_patch_dom,pfscan_G_patch_dom,pfscan_RRM_dom	-	no_errors	RBM6	HGNC	ENSG00000004534				197	0	0	161	45	21.8447
MAPKAPK3	0	genome.wustl.edu	37	3	50655080	50655080	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	3	50655080	50655080	G	-	DEL	MAPKAPK3	ENST00000357955	human	ensembl	74_37	+1	known	frame_shift_del	c.84	p.R31fs	0.000	superfamily_Kinase-like_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	MAPKAPK3	HGNC	ENSG00000114738				139	0	0	120	18	13.0435
DOCK3	0	genome.wustl.edu	37	3	51417604	51417604	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	3	51417604	51417604	C	-	DEL	DOCK3	ENST00000266037	human	ensembl	74_37	+1	known	frame_shift_del	c.5549	p.P1852fs	0.115	NULL	pfam_DOCK_C,pfam_SH3_2,superfamily_SH3_domain,superfamily_ARM-type_fold,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	DOCK3	HGNC	ENSG00000088538				104	0	0	104	12	10.3448
TWF2	0	genome.wustl.edu	37	3	52263948	52263948	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	3	52263948	52263948	G	-	DEL	TWF2	ENST00000305533	human	ensembl	74_37	-1	known	frame_shift_del	c.748	p.E251fs	1.000	pfam_Actin-bd_cofilin/tropomyosin,smart_Actin-bd_cofilin/tropomyosin	pfam_Actin-bd_cofilin/tropomyosin,smart_Actin-bd_cofilin/tropomyosin	-	no_errors	TWF2	HGNC	ENSG00000247596				65	0	0	63	8	11.2676
PBRM1	0	genome.wustl.edu	37	3	52588798	52588798	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	3	52588798	52588798	C	-	DEL	PBRM1	ENST00000296302	human	ensembl	74_37	-1	known	frame_shift_del	c.4551	p.P1518fs	1.000	NULL	pfam_Bromodomain,pfam_BAH_dom,pfam_HMG_box_dom,superfamily_Bromodomain,superfamily_HMG_box_dom,smart_Bromodomain,smart_BAH_dom,smart_HMG_box_dom,pfscan_BAH_dom,pfscan_HMG_box_dom,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	PBRM1	HGNC	ENSG00000163939				66	0	0	68	11	13.9241
FAM208A	0	genome.wustl.edu	37	3	56681079	56681079	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	3	56681079	56681079	A	-	DEL	FAM208A	ENST00000355628	human	ensembl	74_37	-1	known	frame_shift_del	c.1686	p.F562fs	1.000	NULL	pfam_DUF3715	-	no_errors	FAM208A	HGNC	ENSG00000163946				114	0	0	66	32	32.6531
FAM86DP	0	genome.wustl.edu	37	3	75480039	75480040	+	RNA	INS	-	-	CA			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	3	75480039	75480040	-	CA	INS	FAM86DP	ENST00000459803	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000:1.000	-	-	-	no_errors	FAM86DP	HGNC	ENSG00000244026				70	0	0	63	11	14.8649
SETD5	0	genome.wustl.edu	37	3	9517294	9517295	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	3	9517294	9517295	-	C	INS	SETD5	ENST00000402198	human	ensembl	74_37	+1	known	frame_shift_ins	c.3848_3849	p.S1286fs	1.000:0.997	NULL	pfam_SET_dom,smart_SET_dom,pfscan_SET_dom	-	no_errors	SETD5	HGNC	ENSG00000168137				157	0	0	126	32	20.2532
INTS12	0	genome.wustl.edu	37	4	106621122	106621122	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	4	106621122	106621122	A	-	DEL	INTS12	ENST00000340139	human	ensembl	74_37	-1	known	frame_shift_del	c.41	p.L14fs	1.000	NULL	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	INTS12	HGNC	ENSG00000138785				325	0	0	210	37	14.9798
RRH	0	genome.wustl.edu	37	4	110756541	110756541	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	4	110756541	110756541	T	-	DEL	RRH	ENST00000317735	human	ensembl	74_37	+1	known	frame_shift_del	c.317	p.F108fs	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Peropsin,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Peropsin,prints_GPCR_Rhodpsn	-	no_errors	RRH	HGNC	ENSG00000180245				159	0	0	110	21	16.0305
ANK2	0	genome.wustl.edu	37	4	114275575	114275575	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	4	114275575	114275575	A	-	DEL	ANK2	ENST00000357077	human	ensembl	74_37	+1	known	frame_shift_del	c.5801	p.K1935fs	0.920	NULL	pfam_Ankyrin_rpt,pfam_ZU5,pfam_Death_domain,superfamily_Ankyrin_rpt-contain_dom,superfamily_DEATH-like_dom,smart_Ankyrin_rpt,smart_ZU5,smart_Death_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Death_domain,pfscan_ZU5,prints_Ankyrin_rpt	-	no_errors	ANK2	HGNC	ENSG00000145362				135	0	0	97	20	17.094
ARSJ	0	genome.wustl.edu	37	4	114823494	114823494	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	4	114823494	114823494	T	-	DEL	ARSJ	ENST00000315366	human	ensembl	74_37	-1	known	frame_shift_del	c.1736	p.K579fs	0.628	NULL	pfam_Sulfatase,superfamily_Alkaline_phosphatase_core	-	no_errors	ARSJ	HGNC	ENSG00000180801				77	0	0	30	16	34.7826
TRAM1L1	0	genome.wustl.edu	37	4	118005517	118005517	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	4	118005517	118005517	T	-	DEL	TRAM1L1	ENST00000310754	human	ensembl	74_37	-1	known	frame_shift_del	c.1033	p.R345fs	1.000	pirsf_Translocation_assoc_membrane	pfam_TRAM1,pfam_TLC-dom,smart_TLC-dom,pirsf_Translocation_assoc_membrane,pfscan_TLC-dom	-	no_errors	TRAM1L1	HGNC	ENSG00000174599				440	1	0.226757	264	56	17.5
KIAA1109	0	genome.wustl.edu	37	4	123165029	123165029	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	4	123165029	123165029	A	-	DEL	KIAA1109	ENST00000264501	human	ensembl	74_37	+1	known	frame_shift_del	c.4763	p.K1590fs	0.999	NULL	pfam_Fragile_site-assoc_C	-	no_errors	KIAA1109	HGNC	ENSG00000138688				122	0	0	61	15	19.7368
CTBP1	0	genome.wustl.edu	37	4	1235170	1235170	+	RNA	DEL	T	T	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	4	1235170	1235170	T	-	DEL	CTBP1	ENST00000515690	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.231	-	-	-	no_errors	CTBP1	HGNC	ENSG00000159692				180	0	0	120	19	13.6691
SCLT1	0	genome.wustl.edu	37	4	129864162	129864163	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	4	129864162	129864163	-	T	INS	SCLT1	ENST00000281142	human	ensembl	74_37	-1	known	frame_shift_ins	c.1621_1620	p.A540fs	1.000:1.000	NULL	NULL	-	no_errors	SCLT1	HGNC	ENSG00000151466				192	0	0	111	20	15.2672
UVSSA	0	genome.wustl.edu	37	4	1343514	1343514	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	4	1343514	1343514	C	-	DEL	UVSSA	ENST00000389851	human	ensembl	74_37	+1	known	frame_shift_del	c.301	p.R103fs	1.000	superfamily_ENTH_VHS	pfam_DUF2043,superfamily_ENTH_VHS	-	no_errors	UVSSA	HGNC	ENSG00000163945				70	0	0	36	9	20
PCDH18	0	genome.wustl.edu	37	4	138453024	138453025	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	4	138453024	138453025	-	T	INS	PCDH18	ENST00000344876	human	ensembl	74_37	-1	known	frame_shift_ins	c.219_218	p.N73fs	0.657:0.667	pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH18	HGNC	ENSG00000189184				281	0	0	181	32	15.0235
SLC7A11	0	genome.wustl.edu	37	4	139153538	139153539	+	Splice_Site	INS	-	-	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	4	139153538	139153539	-	A	INS	SLC7A11	ENST00000280612	human	ensembl	74_37	-1	known	splice_site_ins	c.405-3_405-2	e3-2	1.000:0.006	-	-	-	no_errors	SLC7A11	HGNC	ENSG00000151012				48	0	0	37	6	13.9535
SORBS2	0	genome.wustl.edu	37	4	186515044	186515044	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	4	186515044	186515044	C	-	DEL	SORBS2	ENST00000284776	human	ensembl	74_37	-1	known	frame_shift_del	c.3130	p.E1044fs	1.000	superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	pfam_SH3_domain,pfam_SH3_2,pfam_Sorb,superfamily_SH3_domain,smart_Sorb,smart_SH3_domain,pfscan_Sorb,pfscan_SH3_domain,prints_SH3_domain,prints_p67phox	-	no_errors	SORBS2	HGNC	ENSG00000154556				150	0	0	79	13	14.1304
FAT1	0	genome.wustl.edu	37	4	187519161	187519162	+	Frame_Shift_Del	DEL	AA	AA	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	4	187519161	187519162	AA	-	DEL	FAT1	ENST00000441802	human	ensembl	74_37	-1	known	frame_shift_del	c.12222_12221	p.F4074fs	0.061:0.998	smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom	pfam_Cadherin,pfam_Laminin_G,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,smart_EG-like_dom,smart_Laminin_G,smart_EGF-like_Ca-bd_dom,prints_Cadherin,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin	-	no_errors	FAT1	HGNC	ENSG00000083857				116	0	0	71	12	14.4578
CHRNA9	0	genome.wustl.edu	37	4	40337892	40337892	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	4	40337892	40337892	T	-	DEL	CHRNA9	ENST00000310169	human	ensembl	74_37	+1	known	frame_shift_del	c.113	p.F39fs	1.000	pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_Nicotinic_acetylcholine_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	CHRNA9	HGNC	ENSG00000174343				155	0	0	87	23	20.9091
PHOX2B	0	genome.wustl.edu	37	4	41748245	41748245	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	4	41748245	41748245	T	-	DEL	PHOX2B	ENST00000226382	human	ensembl	74_37	-1	known	frame_shift_del	c.524	p.K175fs	0.225	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Antifreeze_1	-	no_errors	PHOX2B	HGNC	ENSG00000109132				132	0	0	79	12	13.1868
LYAR	0	genome.wustl.edu	37	4	4270269	4270270	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	4	4270269	4270270	-	T	INS	LYAR	ENST00000343470	human	ensembl	74_37	-1	known	frame_shift_ins	c.993_992	p.L332fs	1.000:1.000	NULL	pfam_Znf_C2H2_LYAR	-	no_errors	LYAR	HGNC	ENSG00000145220				249	0	0	129	22	14.5695
GUF1	0	genome.wustl.edu	37	4	44680574	44680574	+	RNA	DEL	A	A	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	4	44680574	44680574	A	-	DEL	GUF1	ENST00000506793	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	GUF1	HGNC	ENSG00000151806				11	0	0	13	2	13.3333
ATP10D	0	genome.wustl.edu	37	4	47559941	47559942	+	Frame_Shift_Del	DEL	AG	AG	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	4	47559941	47559942	AG	-	DEL	ATP10D	ENST00000273859	human	ensembl	74_37	+1	known	frame_shift_del	c.2085_2086	p.K697fs	0.000:0.068	superfamily_HAD-like_dom	pfam_ATPase_P-typ_transduc_dom_A,pfam_HAD-like_dom,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Plipid-transp,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP10D	HGNC	ENSG00000145246				126	0	0	70	22	23.913
FIP1L1	0	genome.wustl.edu	37	4	54319248	54319249	+	Frame_Shift_Del	DEL	AG	AG	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	4	54319248	54319249	AG	-	DEL	FIP1L1	ENST00000337488	human	ensembl	74_37	+1	known	frame_shift_del	c.1447_1448	p.E486fs	0.975:0.991	NULL	pfam_Fip1	-	no_errors	FIP1L1	HGNC	ENSG00000145216				139	0	0	91	12	11.6505
REST	0	genome.wustl.edu	37	4	57777446	57777446	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	4	57777446	57777446	C	-	DEL	REST	ENST00000309042	human	ensembl	74_37	+1	known	frame_shift_del	c.642	p.I216fs	0.434	smart_Znf_C2H2-like	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	REST	HGNC	ENSG00000084093				98	0	0	76	14	15.5556
MOB1B	0	genome.wustl.edu	37	4	71844995	71844995	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	4	71844995	71844995	T	-	DEL	MOB1B	ENST00000309395	human	ensembl	74_37	+1	known	frame_shift_del	c.560	p.F189fs	1.000	pfam_Mob1_phocein,superfamily_Mob1_phocein	pfam_Mob1_phocein,superfamily_Mob1_phocein	-	no_errors	MOB1B	HGNC	ENSG00000173542				203	0	0	117	21	15.2174
SEC31A	0	genome.wustl.edu	37	4	83785565	83785565	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	4	83785565	83785565	T	-	DEL	SEC31A	ENST00000432794	human	ensembl	74_37	-1	known	frame_shift_del	c.1384	p.I462fs	0.985	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	SEC31A	HGNC	ENSG00000138674				110	1	0.900901	77	17	18.0851
TSPAN5	0	genome.wustl.edu	37	4	99403314	99403314	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	4	99403314	99403314	G	-	DEL	TSPAN5	ENST00000305798	human	ensembl	74_37	-1	known	frame_shift_del	c.292	p.L98fs	1.000	pfam_Tetraspanin/Peripherin,prints_Tetraspanin	pfam_Tetraspanin/Peripherin,superfamily_Tetraspanin_EC2,prints_Tetraspanin	-	no_errors	TSPAN5	HGNC	ENSG00000168785				134	0	0	82	12	12.766
PPIP5K2	0	genome.wustl.edu	37	5	102537309	102537309	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	5	102537309	102537309	A	-	DEL	PPIP5K2	ENST00000358359	human	ensembl	74_37	+1	known	frame_shift_del	c.3706	p.N1238fs	0.999	NULL	pfam_His_Pase_superF_clade-2	-	no_errors	PPIP5K2	HGNC	ENSG00000145725				32	0	0	21	4	16
EPB41L4A	0	genome.wustl.edu	37	5	111576418	111576418	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	5	111576418	111576418	A	-	DEL	EPB41L4A	ENST00000261486	human	ensembl	74_37	-1	known	frame_shift_del	c.885	p.F295fs	0.998	pfam_FERM_PH-like_C,pfscan_FERM_domain	pfam_FERM_central,pfam_FERM_N,pfam_FERM_PH-like_C,pfam_FERM-adjacent,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain,prints_Band_41_fam,prints_Ez/rad/moesin_like	-	no_errors	EPB41L4A	HGNC	ENSG00000129595				53	0	0	23	9	28.125
YTHDC2	0	genome.wustl.edu	37	5	112889545	112889545	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	5	112889545	112889545	A	-	DEL	YTHDC2	ENST00000161863	human	ensembl	74_37	+1	known	frame_shift_del	c.2046	p.I684fs	0.993	pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_C,pfscan_Helicase_C	pfam_YTH_domain,pfam_Helicase-assoc_dom,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_DUF1605,pfam_R3H_ss-bd,superfamily_P-loop_NTPase,superfamily_Ankyrin_rpt-contain_dom,smart_R3H_ss-bd,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_R3H_ss-bd,pfscan_YTH_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	YTHDC2	HGNC	ENSG00000047188				84	0	0	43	10	18.8679
CLPTM1L	0	genome.wustl.edu	37	5	1325892	1325892	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	5	1325892	1325892	A	-	DEL	CLPTM1L	ENST00000320895	human	ensembl	74_37	-1	known	frame_shift_del	c.1120	p.W374fs	0.986	pfam_CLPTM1	pfam_CLPTM1	-	no_errors	CLPTM1L	HGNC	ENSG00000049656				184	0	0	126	23	15.4362
WDR55	0	genome.wustl.edu	37	5	140049102	140049102	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	5	140049102	140049102	A	-	DEL	WDR55	ENST00000358337	human	ensembl	74_37	+1	known	frame_shift_del	c.1015	p.K341fs	1.000	pirsf_WD_repeat_p55	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pirsf_WD_repeat_p55,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR55	HGNC	ENSG00000120314				52	0	0	30	5	14.2857
FCHSD1	0	genome.wustl.edu	37	5	141020095	141020095	+	RNA	DEL	C	C	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	5	141020095	141020095	C	-	DEL	FCHSD1	ENST00000523856	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	FCHSD1	HGNC	ENSG00000197948				33	0	0	19	5	20.8333
PCDH12	0	genome.wustl.edu	37	5	141336748	141336748	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	5	141336748	141336748	G	-	DEL	PCDH12	ENST00000231484	human	ensembl	74_37	-1	known	frame_shift_del	c.669	p.K224fs	0.997	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH12	HGNC	ENSG00000113555				144	0	0	92	16	14.8148
HMMR	0	genome.wustl.edu	37	5	162917426	162917426	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	5	162917426	162917426	A	-	DEL	HMMR	ENST00000393915	human	ensembl	74_37	+1	known	frame_shift_del	c.1993	p.K667fs	1.000	NULL	NULL	-	no_errors	HMMR	HGNC	ENSG00000072571				112	0	0	52	12	18.75
MYO10	0	genome.wustl.edu	37	5	16694606	16694606	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	5	16694606	16694606	C	-	DEL	MYO10	ENST00000513610	human	ensembl	74_37	-1	known	frame_shift_del	c.3674	p.G1225fs	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_Myosin_head_motor_dom,pfam_MyTH4_dom,pfam_Pleckstrin_homology,pfam_FERM_central,pfam_IQ_motif_EF-hand-BS,pfam_Ras-assoc,superfamily_P-loop_NTPase,superfamily_FERM_central,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_Pleckstrin_homology,smart_MyTH4_dom,smart_Band_41_domain,pfscan_FERM_domain,pfscan_IQ_motif_EF-hand-BS,pfscan_MyTH4_dom,pfscan_Pleckstrin_homology,prints_Myosin_head_motor_dom	-	no_errors	MYO10	HGNC	ENSG00000145555				175	1	0.568182	135	19	12.3377
SLC34A1	0	genome.wustl.edu	37	5	176824715	176824715	+	RNA	DEL	C	C	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	5	176824715	176824715	C	-	DEL	SLC34A1	ENST00000513614	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SLC34A1	HGNC	ENSG00000131183				87	0	0	51	15	22.7273
NIPBL	0	genome.wustl.edu	37	5	36985083	36985083	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	5	36985083	36985083	A	-	DEL	NIPBL	ENST00000282516	human	ensembl	74_37	+1	known	frame_shift_del	c.1801	p.K603fs	1.000	NULL	superfamily_ARM-type_fold	-	no_errors	NIPBL	HGNC	ENSG00000164190				131	0	0	75	20	21.0526
MOCS2	0	genome.wustl.edu	37	5	52402940	52402940	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	5	52402940	52402940	G	-	DEL	MOCS2	ENST00000396954	human	ensembl	74_37	-1	known	frame_shift_del	c.65	p.P22fs	1.000	NULL	pfam_Mopterin_biosynth_MoaE,superfamily_Mopterin_biosynth_MoaE	-	no_errors	MOCS2	HGNC	ENSG00000164172				117	0	0	93	11	10.5769
NDUFS4	0	genome.wustl.edu	37	5	52954446	52954446	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	5	52954446	52954446	A	-	DEL	NDUFS4	ENST00000296684	human	ensembl	74_37	+1	known	frame_shift_del	c.416	p.N141fs	1.000	pfam_NADH_UbQ_FeS_4_mit	pfam_NADH_UbQ_FeS_4_mit	-	no_errors	NDUFS4	HGNC	ENSG00000164258				143	0	0	86	6	6.52174
GPX8	0	genome.wustl.edu	37	5	54460113	54460113	+	RNA	DEL	T	T	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	5	54460113	54460113	T	-	DEL	GPX8	ENST00000506123	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	GPX8	HGNC	ENSG00000164294				29	0	0	18	2	10
TRAPPC13	0	genome.wustl.edu	37	5	64946674	64946675	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	5	64946674	64946675	-	A	INS	TRAPPC13	ENST00000545191	human	ensembl	74_37	+1	known	frame_shift_ins	c.466_467	p.M158fs	1.000:1.000	pfam_DUF974	pfam_DUF974	-	no_errors	TRAPPC13	HGNC	ENSG00000113597				63	0	0	40	9	18.3673
FASTKD3	0	genome.wustl.edu	37	5	7867769	7867769	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	5	7867769	7867769	T	-	DEL	FASTKD3	ENST00000264669	human	ensembl	74_37	-1	known	frame_shift_del	c.428	p.K143fs	0.000	NULL	pfam_FAST_2,pfam_FAST_Leu-rich,pfam_RAP,smart_RAP	-	no_errors	FASTKD3	HGNC	ENSG00000124279				86	0	0	48	11	18.6441
MTRR	0	genome.wustl.edu	37	5	7875406	7875406	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	5	7875406	7875406	G	-	DEL	MTRR	ENST00000264668	human	ensembl	74_37	+1	known	frame_shift_del	c.400	p.K136fs	1.000	pfam_Flavodoxin/NO_synth,pfscan_Flavodoxin/NO_synth	pfam_FAD-binding_1,pfam_Flavodoxin/NO_synth,pfam_OxRdtase_FAD/NAD-bd,superfamily_Riboflavin_synthase-like_b-brl,pfscan_Flavodoxin/NO_synth,prints_Flavoprot_Pyr_Nucl_cyt_Rdtase,prints_Flavdoxin	-	no_errors	MTRR	HGNC	ENSG00000124275				400	1	0.249377	263	51	16.242
ZFYVE16	0	genome.wustl.edu	37	5	79773189	79773189	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	5	79773189	79773189	T	-	DEL	ZFYVE16	ENST00000338008	human	ensembl	74_37	+1	known	frame_shift_del	c.4613	p.*1540fs	1.000	NULL	pfam_DUF3480,pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,smart_Znf_FYVE,pirsf_Znf_FYVE_SARA/endofin,pfscan_Znf_FYVE-rel	-	no_errors	ZFYVE16	HGNC	ENSG00000039319				75	0	0	39	10	20.4082
CCNC	0	genome.wustl.edu	37	6	100006296	100006298	+	In_Frame_Del	DEL	AAA	AAA	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	AAA	AAA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	6	100006296	100006298	AAA	-	DEL	CCNC	ENST00000482541	human	ensembl	74_37	-1	putative	in_frame_del	c.423_421	p.F141in_frame_del	0.007:0.028:0.058	superfamily_Cyclin-like	pfam_Cyclin_N,superfamily_Cyclin-like,smart_Cyclin-like	-	no_errors	CCNC	HGNC	ENSG00000112237				62	0	0	36	14	28
ASCC3	0	genome.wustl.edu	37	6	101127558	101127558	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	6	101127558	101127558	T	-	DEL	ASCC3	ENST00000369162	human	ensembl	74_37	-1	known	frame_shift_del	c.2222	p.N741fs	1.000	superfamily_P-loop_NTPase,pfscan_Helicase_C	pfam_Sec63-dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase/UvrB_dom,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_AAA+_ATPase,smart_Helicase_C,smart_Sec63-dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	ASCC3	HGNC	ENSG00000112249				133	0	0	76	16	17.3913
TFAP2A	0	genome.wustl.edu	37	6	10402804	10402804	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	6	10402804	10402804	T	-	DEL	TFAP2A	ENST00000379604	human	ensembl	74_37	-1	known	frame_shift_del	c.804	p.K268fs	1.000	pfam_TF_AP2_C,prints_TF_AP2_C	pfam_TF_AP2_C,prints_TF_AP2_C,prints_TF_AP2_alpha_N	-	no_errors	TFAP2A	HGNC	ENSG00000137203				103	0	0	46	17	26.9841
PREP	0	genome.wustl.edu	37	6	105726144	105726144	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	6	105726144	105726144	G	-	DEL	PREP	ENST00000369110	human	ensembl	74_37	-1	known	frame_shift_del	c.2008	p.L670fs	1.000	pfam_Peptidase_S9	pfam_Pept_S9A_N,pfam_Peptidase_S9,prints_Peptidase_S9A	-	no_errors	PREP	HGNC	ENSG00000085377				118	0	0	104	8	7.14286
ATG5	0	genome.wustl.edu	37	6	106634539	106634539	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	6	106634539	106634539	T	-	DEL	ATG5	ENST00000343245	human	ensembl	74_37	-1	known	frame_shift_del	c.704	p.K235fs	1.000	pfam_Atg5	pfam_Atg5	-	no_errors	ATG5	HGNC	ENSG00000057663				105	0	0	80	15	15.7895
ENSG00000271730	0	genome.wustl.edu	37	6	109319967	109319969	+	RNA	DEL	GAA	GAA	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	GAA	GAA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	6	109319967	109319969	GAA	-	DEL	ENSG00000271730	ENST00000605885	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000:0.000:0.000	-	-	-	no_errors	RP11-787I22.3	Clone_based_vega_gene	ENSG00000271730				80	0	0	27	28	50.9091
ENSG00000271730	0	genome.wustl.edu	37	6	109319967	109319970	+	RNA	DEL	GAAA	GAAA	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	GAAA	GAAA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	6	109319967	109319970	GAAA	-	DEL	ENSG00000271730	ENST00000605885	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000:0.000:0.000:0.000	-	-	-	no_errors	RP11-787I22.3	Clone_based_vega_gene	ENSG00000271730				78	0	0	50	6	10.7143
KIAA1919	0	genome.wustl.edu	37	6	111587361	111587361	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	6	111587361	111587361	T	-	DEL	KIAA1919	ENST00000368847	human	ensembl	74_37	+1	known	frame_shift_del	c.596	p.C202fs	0.469	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	-	no_errors	KIAA1919	HGNC	ENSG00000173214				108	1	0.917431	59	17	22.3684
TRDN	0	genome.wustl.edu	37	6	123759209	123759209	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	6	123759209	123759209	T	-	DEL	TRDN	ENST00000398178	human	ensembl	74_37	-1	known	frame_shift_del	c.1050	p.E351fs	1.000	NULL	pfam_Asp-B-hydro/Triadin_dom	-	no_errors	TRDN	HGNC	ENSG00000186439				11	0	0	7	3	30
ENSG00000229036	0	genome.wustl.edu	37	6	143806162	143806163	+	RNA	INS	-	-	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	6	143806162	143806163	-	T	INS	ENSG00000229036	ENST00000591892	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000:0.003	-	-	-	no_errors	RP1-20N2.6	Clone_based_vega_gene	ENSG00000229036				34	0	0	18	8	30.7692
SHPRH	0	genome.wustl.edu	37	6	146275964	146275964	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	6	146275964	146275964	T	-	DEL	SHPRH	ENST00000367503	human	ensembl	74_37	-1	known	frame_shift_del	c.495	p.E166fs	0.391	NULL	pfam_SNF2_N,pfam_Histone_H1/H5_H15,superfamily_P-loop_NTPase,superfamily_Znf_FYVE_PHD,superfamily_WW_dom,smart_Helicase_ATP-bd,smart_Histone_H1/H5_H15,smart_Znf_PHD,smart_Znf_RING,smart_Helicase_C,pfscan_Znf_RING,pfscan_Helicase_C	-	no_errors	SHPRH	HGNC	ENSG00000146414				151	0	0	101	6	5.60748
CCDC170	0	genome.wustl.edu	37	6	151936775	151936775	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	6	151936775	151936775	A	-	DEL	CCDC170	ENST00000367290	human	ensembl	74_37	+1	known	frame_shift_del	c.1929	p.K645fs	0.026	NULL	superfamily_Prefoldin,superfamily_Smac_DIABLO-like	-	no_errors	CCDC170	HGNC	ENSG00000120262				282	0	0	213	24	10.1266
FGFR1OP	0	genome.wustl.edu	37	6	167413537	167413537	+	RNA	DEL	T	T	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	6	167413537	167413537	T	-	DEL	FGFR1OP	ENST00000476078	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	FGFR1OP	HGNC	ENSG00000213066				113	0	0	83	13	13.5417
RBM24	0	genome.wustl.edu	37	6	17292449	17292451	+	RNA	DEL	AAA	AAA	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	AAA	AAA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	6	17292449	17292451	AAA	-	DEL	RBM24	ENST00000508508	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.915:0.719:0.391	-	-	-	no_errors	RBM24	HGNC	ENSG00000112183				75	0	0	27	2	6.89655
HLA-F	0	genome.wustl.edu	37	6	29694045	29694045	+	RNA	DEL	G	G	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	6	29694045	29694045	G	-	DEL	HLA-F	ENST00000484704	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	HLA-F	HGNC	ENSG00000204642				69	0	0	53	12	18.4615
DHX16	0	genome.wustl.edu	37	6	30621048	30621048	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	6	30621048	30621048	T	-	DEL	DHX16	ENST00000376442	human	ensembl	74_37	-1	known	frame_shift_del	c.3097	p.I1033fs	0.987	NULL	pfam_DUF1605,pfam_Helicase-assoc_dom,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DHX16	HGNC	ENSG00000204560				187	0	0	127	17	11.8056
MDC1	0	genome.wustl.edu	37	6	30681463	30681463	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	6	30681463	30681463	T	-	DEL	MDC1	ENST00000376406	human	ensembl	74_37	-1	known	frame_shift_del	c.549	p.K183fs	0.166	NULL	pfam_FHA_dom,superfamily_BRCT_dom,superfamily_SMAD_FHA_domain,smart_FHA_dom,pfscan_BRCT_dom,pfscan_FHA_dom	-	no_errors	MDC1	HGNC	ENSG00000137337				99	0	0	59	6	9.23077
C6orf25	0	genome.wustl.edu	37	6	31692529	31692529	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	6	31692529	31692529	C	-	DEL	C6orf25	ENST00000375809	human	ensembl	74_37	+1	known	frame_shift_del	c.548	p.P185fs	0.995	NULL	NULL	-	no_errors	C6orf25	HGNC	ENSG00000204420				117	0	0	76	30	28.3019
PRRT1	0	genome.wustl.edu	37	6	32119591	32119591	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	6	32119591	32119591	T	-	DEL	PRRT1	ENST00000211413	human	ensembl	74_37	-1	known	frame_shift_del	c.14	p.K5fs	1.000	NULL	pfam_CD225/Dispanin_fam	-	no_errors	PRRT1	HGNC	ENSG00000204314				82	0	0	63	7	10
TAF11	0	genome.wustl.edu	37	6	34846381	34846381	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	6	34846381	34846381	T	-	DEL	TAF11	ENST00000361288	human	ensembl	74_37	-1	known	frame_shift_del	c.622	p.I208fs	1.000	NULL	pfam_TAFII28,pfam_CBFA_NFYB_domain,superfamily_Histone-fold	-	no_errors	TAF11	HGNC	ENSG00000064995				178	0	0	159	29	15.4255
PRPF4B	0	genome.wustl.edu	37	6	4052975	4052975	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	6	4052975	4052975	A	-	DEL	PRPF4B	ENST00000337659	human	ensembl	74_37	+1	known	frame_shift_del	c.2334	p.K780fs	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	PRPF4B	HGNC	ENSG00000112739				64	0	0	38	15	28.3019
CDYL	0	genome.wustl.edu	37	6	4716061	4716061	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	6	4716061	4716061	A	-	DEL	CDYL	ENST00000328908	human	ensembl	74_37	+1	known	frame_shift_del	c.49	p.N18fs	0.000	NULL	pfam_Crotonase_core_superfam,pfam_Chromo_domain,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,pfscan_Chromo_domain/shadow	-	no_errors	CDYL	HGNC	ENSG00000153046				95	0	0	83	5	5.68182
MYO6	0	genome.wustl.edu	37	6	76599858	76599858	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	6	76599858	76599858	A	-	DEL	MYO6	ENST00000369981	human	ensembl	74_37	+1	known	frame_shift_del	c.2743	p.K917fs	1.000	NULL	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom,prints_Myosin_head_motor_dom	-	no_errors	MYO6	HGNC	ENSG00000196586				128	0	0	125	19	13.1944
TTK	0	genome.wustl.edu	37	6	80751897	80751897	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	6	80751897	80751897	A	-	DEL	TTK	ENST00000369798	human	ensembl	74_37	+1	known	frame_shift_del	c.2552	p.R854fs	0.102	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	TTK	HGNC	ENSG00000112742				72	0	0	27	6	18.1818
IBTK	0	genome.wustl.edu	37	6	82891642	82891643	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	6	82891642	82891643	-	T	INS	IBTK	ENST00000306270	human	ensembl	74_37	-1	known	frame_shift_ins	c.3679_3678	p.V1226fs	0.980:1.000	NULL	pfam_Reg_chr_condens,pfam_BTB_POZ,pfam_Ankyrin_rpt,superfamily_RCC1/BLIP-II,superfamily_BTB/POZ_fold,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_BTB/POZ-like,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_BTB/POZ-like,pfscan_Reg_chr_condens	-	no_errors	IBTK	HGNC	ENSG00000005700				71	0	0	52	8	13.3333
MAP3K7	0	genome.wustl.edu	37	6	91246134	91246134	+	RNA	DEL	A	A	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	6	91246134	91246134	A	-	DEL	MAP3K7	ENST00000479630	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.268	-	-	-	no_errors	MAP3K7	HGNC	ENSG00000135341				66	0	0	52	8	13.3333
SLC12A9	0	genome.wustl.edu	37	7	100452322	100452323	+	Frame_Shift_Del	DEL	CT	CT	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	CT	CT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	7	100452322	100452323	CT	-	DEL	SLC12A9	ENST00000354161	human	ensembl	74_37	+1	known	frame_shift_del	c.262_263	p.S89fs	1.000:1.000	pfam_AA-permease/SLC12A_dom	pfam_AA-permease/SLC12A_dom	-	no_errors	SLC12A9	HGNC	ENSG00000146828				154	0	0	132	18	12
KMT2E	0	genome.wustl.edu	37	7	104746985	104746985	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	7	104746985	104746985	A	-	DEL	KMT2E	ENST00000257745	human	ensembl	74_37	+1	known	frame_shift_del	c.2613	p.K873fs	0.999	NULL	pfam_SET_dom,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_SET_dom,pfscan_SET_dom,pfscan_Znf_PHD-finger	-	no_errors	KMT2E	HGNC	ENSG00000005483				105	0	0	87	14	13.8614
PIK3CG	0	genome.wustl.edu	37	7	106519994	106519994	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	7	106519994	106519994	A	-	DEL	PIK3CG	ENST00000359195	human	ensembl	74_37	+1	known	frame_shift_del	c.2422	p.K809fs	1.000	superfamily_Kinase-like_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_C2_dom,pfam_PI3K_Ras-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CG	HGNC	ENSG00000105851				140	0	0	113	17	13.0769
WASL	0	genome.wustl.edu	37	7	123332485	123332485	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	7	123332485	123332485	T	-	DEL	WASL	ENST00000223023	human	ensembl	74_37	-1	known	frame_shift_del	c.1263	p.V422fs	1.000	pfam_WH2_dom,superfamily_WASP_C,smart_WH2_dom,pfscan_WH2_dom	pfam_WH1/EVH1,pfam_CRIB_dom,pfam_WH2_dom,superfamily_WASP_C,smart_WH1/EVH1,smart_CRIB_dom,smart_WH2_dom,pfscan_CRIB_dom,pfscan_WH1/EVH1,pfscan_WH2_dom	-	no_errors	WASL	HGNC	ENSG00000106299				160	0	0	104	44	29.7297
ZC3HAV1	0	genome.wustl.edu	37	7	138758692	138758694	+	In_Frame_Del	DEL	AGA	AGA	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	AGA	AGA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	7	138758692	138758694	AGA	-	DEL	ZC3HAV1	ENST00000242351	human	ensembl	74_37	-1	known	in_frame_del	c.1782_1780	p.S594in_frame_del	0.000:0.020:0.019	pfscan_WWE-dom	pfam_Poly(ADP-ribose)pol_cat_dom,pfscan_WWE-dom,pfscan_Poly(ADP-ribose)pol_cat_dom	-	no_errors	ZC3HAV1	HGNC	ENSG00000105939				100	0	0	89	10	10.101
NOBOX	0	genome.wustl.edu	37	7	144098496	144098496	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	7	144098496	144098496	G	-	DEL	NOBOX	ENST00000467773	human	ensembl	74_37	-1	known	frame_shift_del	c.487	p.R163fs	0.001	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	-	no_errors	NOBOX	HGNC	ENSG00000106410				50	0	0	65	6	8.4507
GIMAP8	0	genome.wustl.edu	37	7	150174435	150174435	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	7	150174435	150174435	A	-	DEL	GIMAP8	ENST00000307271	human	ensembl	74_37	+1	known	frame_shift_del	c.1565	p.D525fs	0.000	pfam_AIG1,superfamily_P-loop_NTPase	pfam_AIG1,superfamily_P-loop_NTPase	-	no_errors	GIMAP8	HGNC	ENSG00000171115				111	0	0	71	32	31.068
KMT2C	0	genome.wustl.edu	37	7	151845959	151845959	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	7	151845959	151845959	T	-	DEL	KMT2C	ENST00000355193	human	ensembl	74_37	-1	known	frame_shift_del	c.13224	p.K4408fs	0.998	NULL	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_box_dom,smart_Znf_PHD,smart_Znf_RING,smart_HMG_box_dom,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_DHHC_palmitoyltrfase,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	KMT2C	HGNC	ENSG00000055609				90	0	0	59	35	37.234
DPP6	0	genome.wustl.edu	37	7	154237703	154237703	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	7	154237703	154237703	A	-	DEL	DPP6	ENST00000377770	human	ensembl	74_37	+1	known	frame_shift_del	c.544	p.I184fs	1.000	NULL	pfam_Peptidase_S9B,pfam_Peptidase_S9,pfam_PD40	-	no_errors	DPP6	HGNC	ENSG00000130226				13	0	0	4	2	33.3333
SP8	0	genome.wustl.edu	37	7	20824665	20824665	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	7	20824665	20824665	C	-	DEL	SP8	ENST00000418710	human	ensembl	74_37	-1	known	frame_shift_del	c.771	p.L258fs	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2,prints_Antifreeze_1	-	no_errors	SP8	HGNC	ENSG00000164651				22	0	0	31	4	11.4286
DNAH11	0	genome.wustl.edu	37	7	21639564	21639564	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	7	21639564	21639564	T	-	DEL	DNAH11	ENST00000328843	human	ensembl	74_37	+1	known	frame_shift_del	c.2827	p.Q945fs	0.826	NULL	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH11	HGNC	ENSG00000105877				59	0	0	36	11	23.4043
NOD1	0	genome.wustl.edu	37	7	30491486	30491486	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	7	30491486	30491486	A	-	DEL	NOD1	ENST00000222823	human	ensembl	74_37	-1	known	frame_shift_del	c.1547	p.F516fs	0.990	pfscan_NACHT_NTPase	pfam_CARD,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_CARD	-	no_errors	NOD1	HGNC	ENSG00000106100				125	1	0.793651	82	39	32.2314
DPY19L2P1	0	genome.wustl.edu	37	7	35131318	35131318	+	RNA	DEL	T	T	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	7	35131318	35131318	T	-	DEL	DPY19L2P1	ENST00000436258	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	DPY19L2P1	HGNC	ENSG00000189212				8	0	0	4	4	50
CCT6P1	0	genome.wustl.edu	37	7	65220825	65220825	+	RNA	DEL	T	T	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	7	65220825	65220825	T	-	DEL	CCT6P1	ENST00000442266	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.997	-	-	-	no_errors	CCT6P1	HGNC	ENSG00000228409				75	0	0	64	10	13.5135
GTF2I	0	genome.wustl.edu	37	7	74114939	74114939	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	7	74114939	74114939	T	-	DEL	GTF2I	ENST00000324896	human	ensembl	74_37	+1	known	frame_shift_del	c.561	p.L189fs	1.000	superfamily_GTF2I,pirsf_TF_II-I,pfscan_GTF2I	pfam_GTF2I,superfamily_GTF2I,pirsf_TF_II-I,pfscan_GTF2I	-	no_errors	GTF2I	HGNC	ENSG00000077809				326	0	0	247	88	26.2687
MAGI2	0	genome.wustl.edu	37	7	77764525	77764526	+	Splice_Site	INS	-	-	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	7	77764525	77764526	-	A	INS	MAGI2	ENST00000354212	human	ensembl	74_37	-1	known	splice_site_ins	c.2846-3_2846-2	e17-2	1.000:0.036	-	-	-	no_errors	MAGI2	HGNC	ENSG00000187391				99	0	0	91	11	10.7843
PCLO	0	genome.wustl.edu	37	7	82390038	82390038	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	7	82390038	82390038	T	-	DEL	PCLO	ENST00000333891	human	ensembl	74_37	-1	known	frame_shift_del	c.15205	p.T5069fs	1.000	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	pfam_Znf_piccolo,pfam_C2_dom,pfam_PDZ,superfamily_C2_dom,superfamily_PDZ,superfamily_Znf_FYVE_PHD,smart_PDZ,smart_C2_dom,pfscan_C2_dom,pfscan_PDZ	-	no_errors	PCLO	HGNC	ENSG00000186472				64	0	0	36	10	21.7391
PCLO	0	genome.wustl.edu	37	7	82582944	82582944	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	7	82582944	82582944	T	-	DEL	PCLO	ENST00000333891	human	ensembl	74_37	-1	known	frame_shift_del	c.7325	p.K2442fs	0.984	NULL	pfam_Znf_piccolo,pfam_C2_dom,pfam_PDZ,superfamily_C2_dom,superfamily_PDZ,superfamily_Znf_FYVE_PHD,smart_PDZ,smart_C2_dom,pfscan_C2_dom,pfscan_PDZ	-	no_errors	PCLO	HGNC	ENSG00000186472				45	0	0	23	5	17.8571
CYP51A1	0	genome.wustl.edu	37	7	91752494	91752494	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	7	91752494	91752494	T	-	DEL	CYP51A1	ENST00000003100	human	ensembl	74_37	-1	known	frame_shift_del	c.1026	p.K342fs	1.000	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_E_grp-I,prints_Cyt_P450,prints_Cyt_P450_B	-	no_errors	CYP51A1	HGNC	ENSG00000001630				287	0	0	230	37	13.8577
SAMD9L	0	genome.wustl.edu	37	7	92761061	92761061	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	7	92761061	92761061	T	-	DEL	SAMD9L	ENST00000318238	human	ensembl	74_37	-1	known	frame_shift_del	c.4224	p.K1408fs	0.665	NULL	superfamily_SAM/pointed,superfamily_P-loop_NTPase,pfscan_SAM	-	no_errors	SAMD9L	HGNC	ENSG00000177409				425	0	0	300	107	26.2899
UBR5	0	genome.wustl.edu	37	8	103289349	103289349	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	8	103289349	103289349	T	-	DEL	UBR5	ENST00000520539	human	ensembl	74_37	-1	known	frame_shift_del	c.6360	p.E2121fs	0.987	NULL	pfam_HECT,pfam_E3_UbLigase_EDD_UBA,pfam_PABP_HYD,pfam_Znf_N-recognin,superfamily_HECT,superfamily_PABP_HYD,superfamily_RCC1/BLIP-II,smart_Znf_N-recognin_met,smart_PABP_HYD,smart_HECT,pfscan_HECT,pfscan_Znf_N-recognin	-	no_errors	UBR5	HGNC	ENSG00000104517				231	0	0	208	34	14.0496
DCAF13	0	genome.wustl.edu	37	8	104439487	104439487	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	8	104439487	104439487	T	-	DEL	DCAF13	ENST00000519682	human	ensembl	74_37	+1	putative	frame_shift_del	c.619	p.F209fs	0.001	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DCAF13	HGNC	ENSG00000164934				61	0	0	36	8	18.1818
CSMD3	0	genome.wustl.edu	37	8	113241029	113241029	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	8	113241029	113241029	A	-	DEL	CSMD3	ENST00000297405	human	ensembl	74_37	-1	known	frame_shift_del	c.10920	p.F3640fs	1.000	NULL	pfam_CUB_dom,pfam_Sushi_SCR_CCP,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_CUB_dom,smart_Sushi_SCR_CCP,pfscan_CUB_dom,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD3	HGNC	ENSG00000164796				120	1	0.826446	69	16	18.8235
TRPS1	0	genome.wustl.edu	37	8	116599323	116599323	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	8	116599323	116599323	C	-	DEL	TRPS1	ENST00000395715	human	ensembl	74_37	-1	known	frame_shift_del	c.2605	p.A869fs	1.000	NULL	pfam_Znf_GATA,smart_Znf_C2H2-like,smart_Znf_GATA,pfscan_Znf_C2H2,pfscan_Znf_GATA,prints_Znf_GATA	-	no_errors	TRPS1	HGNC	ENSG00000104447				102	0	0	91	15	14.1509
COL14A1	0	genome.wustl.edu	37	8	121160125	121160126	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	8	121160125	121160126	-	T	INS	COL14A1	ENST00000297848	human	ensembl	74_37	+1	known	frame_shift_ins	c.44_45	p.L17fs	0.996:0.996	NULL	pfam_VWF_A,pfam_Fibronectin_type3,pfam_Collagen,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_VWF_A,smart_Laminin_G,pfscan_Fibronectin_type3,pfscan_VWF_A	-	no_errors	COL14A1	HGNC	ENSG00000187955				60	0	0	62	7	10.1449
ATAD2	0	genome.wustl.edu	37	8	124384893	124384893	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	8	124384893	124384893	T	-	DEL	ATAD2	ENST00000287394	human	ensembl	74_37	-1	known	frame_shift_del	c.354	p.E119fs	0.995	NULL	pfam_ATPase_AAA_core,pfam_Bromodomain,superfamily_P-loop_NTPase,superfamily_Bromodomain,smart_AAA+_ATPase,smart_Bromodomain,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	ATAD2	HGNC	ENSG00000156802				266	0	0	156	38	19.5876
MYC	0	genome.wustl.edu	37	8	128753073	128753073	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	8	128753073	128753073	A	-	DEL	MYC	ENST00000377970	human	ensembl	74_37	+1	known	frame_shift_del	c.1234	p.A414fs	1.000	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom,prints_Tscrpt_reg_Myc	pfam_Tscrpt_reg_Myc_N,pfam_Myc-LZ,pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom,prints_Tscrpt_reg_Myc	-	no_errors	MYC	HGNC	ENSG00000136997				279	0	0	240	23	8.74525
LY6H	0	genome.wustl.edu	37	8	144239712	144239712	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	8	144239712	144239712	C	-	DEL	LY6H	ENST00000342752	human	ensembl	74_37	-1	known	frame_shift_del	c.441	p.L148fs	0.992	NULL	pfam_LY6_UPAR,smart_LY6_UPA_recep-like	-	no_errors	LY6H	HGNC	ENSG00000176956				92	0	0	68	13	16.0494
MAPK15	0	genome.wustl.edu	37	8	144804319	144804319	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	8	144804319	144804319	G	-	DEL	MAPK15	ENST00000338033	human	ensembl	74_37	+1	known	frame_shift_del	c.1533	p.G513fs	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	MAPK15	HGNC	ENSG00000181085				205	0	0	159	19	10.6742
VPS28	0	genome.wustl.edu	37	8	145652340	145652341	+	RNA	INS	-	-	G			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	8	145652340	145652341	-	G	INS	VPS28	ENST00000526734	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	VPS28	HGNC	ENSG00000160948				45	0	0	45	3	6.25
NAT1	0	genome.wustl.edu	37	8	18079720	18079720	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	8	18079720	18079720	T	-	DEL	NAT1	ENST00000545197	human	ensembl	74_37	+1	known	frame_shift_del	c.350	p.F118fs	0.053	pfam_Arylamine_N-AcTrfase,prints_Arylamine_N-AcTrfase	pfam_Arylamine_N-AcTrfase,prints_Arylamine_N-AcTrfase	-	no_errors	NAT1	HGNC	ENSG00000171428				261	0	0	208	32	13.3333
SLC39A14	0	genome.wustl.edu	37	8	22273344	22273344	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	8	22273344	22273344	G	-	DEL	SLC39A14	ENST00000359741	human	ensembl	74_37	+1	known	frame_shift_del	c.813	p.V273fs	0.999	pfam_ZIP	pfam_ZIP	-	no_errors	SLC39A14	HGNC	ENSG00000104635				130	0	0	111	14	11.2
SORBS3	0	genome.wustl.edu	37	8	22426753	22426753	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	8	22426753	22426753	G	-	DEL	SORBS3	ENST00000240123	human	ensembl	74_37	+1	known	frame_shift_del	c.1398	p.D468fs	1.000	pfam_SH3_domain,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	pfam_SH3_domain,pfam_SH3_2,pfam_Sorb,superfamily_SH3_domain,smart_Sorb,smart_SH3_domain,prints_p67phox,prints_SH3_domain,pfscan_Sorb,pfscan_SH3_domain	-	no_errors	SORBS3	HGNC	ENSG00000120896				61	0	0	57	9	13.6364
CHMP7	0	genome.wustl.edu	37	8	23106785	23106785	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	8	23106785	23106785	G	-	DEL	CHMP7	ENST00000313219	human	ensembl	74_37	+1	known	frame_shift_del	c.362	p.V123fs	1.000	NULL	pfam_Snf7	-	no_errors	CHMP7	HGNC	ENSG00000147457				100	0	0	103	9	8.03571
ADAM28	0	genome.wustl.edu	37	8	24167472	24167473	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	8	24167472	24167473	-	A	INS	ADAM28	ENST00000265769	human	ensembl	74_37	+1	known	frame_shift_ins	c.216_217	p.N74fs	1.000:1.000	pfam_Peptidase_M12B_N	pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_ADAM_Cys-rich,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_EG-like_dom,pfscan_Peptidase_M12B,prints_Blood-coag_inhib_Disintegrin	-	no_errors	ADAM28	HGNC	ENSG00000042980				103	0	0	72	10	12.1951
KCTD9	0	genome.wustl.edu	37	8	25287444	25287445	+	Frame_Shift_Del	DEL	CT	CT	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	CT	CT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	8	25287444	25287445	CT	-	DEL	KCTD9	ENST00000221200	human	ensembl	74_37	-1	known	frame_shift_del	c.1099_1098	p.G367fs	1.000:0.999	pfam_5peptide_repeat	pfam_5peptide_repeat,pfam_T1-type_BTB,pfam_K_channel_plant,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like	-	no_errors	KCTD9	HGNC	ENSG00000104756				276	0	0	173	32	15.6098
TEX15	0	genome.wustl.edu	37	8	30703516	30703516	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	8	30703516	30703516	T	-	DEL	TEX15	ENST00000256246	human	ensembl	74_37	-1	known	frame_shift_del	c.3018	p.A1007fs	1.000	NULL	NULL	-	no_errors	TEX15	HGNC	ENSG00000133863				444	0	0	239	41	14.6429
RAB11FIP1	0	genome.wustl.edu	37	8	37756850	37756850	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	8	37756850	37756850	C	-	DEL	RAB11FIP1	ENST00000330843	human	ensembl	74_37	-1	known	frame_shift_del	c.110	p.G37fs	1.000	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	pfam_Rab-bd_FIP-RBD,pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	-	no_errors	RAB11FIP1	HGNC	ENSG00000156675				55	0	0	55	11	16.6667
CHRNB3	0	genome.wustl.edu	37	8	42587571	42587571	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	8	42587571	42587571	A	-	DEL	CHRNB3	ENST00000289957	human	ensembl	74_37	+1	known	frame_shift_del	c.1121	p.K376fs	0.000	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_Nicotinic_acetylcholine_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	CHRNB3	HGNC	ENSG00000147432				90	0	0	85	10	10.5263
SNAI2	0	genome.wustl.edu	37	8	49831507	49831507	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	8	49831507	49831507	A	-	DEL	SNAI2	ENST00000020945	human	ensembl	74_37	-1	known	frame_shift_del	c.666	p.F222fs	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	SNAI2	HGNC	ENSG00000019549				154	0	0	99	23	18.8525
RP1	0	genome.wustl.edu	37	8	55539295	55539295	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	8	55539295	55539295	T	-	DEL	RP1	ENST00000220676	human	ensembl	74_37	+1	known	frame_shift_del	c.2853	p.S953fs	0.057	NULL	pfam_Doublecortin_dom,smart_Doublecortin_dom,pfscan_Doublecortin_dom	-	no_errors	RP1	HGNC	ENSG00000104237				124	0	0	93	14	13.0841
PLAG1	0	genome.wustl.edu	37	8	57079754	57079754	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	8	57079754	57079754	T	-	DEL	PLAG1	ENST00000316981	human	ensembl	74_37	-1	known	frame_shift_del	c.551	p.K184fs	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	PLAG1	HGNC	ENSG00000181690				84	0	0	77	16	17.2043
SULF1	0	genome.wustl.edu	37	8	70514026	70514026	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	8	70514026	70514026	T	-	DEL	SULF1	ENST00000260128	human	ensembl	74_37	+1	known	frame_shift_del	c.1023	p.F343fs	0.786	pfam_Sulfatase,superfamily_Alkaline_phosphatase_core,pirsf_Extracellular_sulfatase	pfam_Sulfatase,pfam_Extracellular_sulfatase_C,pfam_Phosphodiest/P_Trfase,superfamily_Alkaline_phosphatase_core,pirsf_Extracellular_sulfatase	-	no_errors	SULF1	HGNC	ENSG00000137573				563	0	0	457	64	12.2841
SPAG11A	0	genome.wustl.edu	37	8	7718228	7718228	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	8	7718228	7718228	T	-	DEL	SPAG11A	ENST00000326558	human	ensembl	74_37	+1	known	frame_shift_del	c.275	p.F94fs	0.999	NULL	pfam_Sperm_Ag_HE2	-	no_errors	SPAG11A	HGNC	ENSG00000178287				321	0	0	253	15	5.59701
ZNF704	0	genome.wustl.edu	37	8	81733778	81733778	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	8	81733778	81733778	T	-	DEL	ZNF704	ENST00000327835	human	ensembl	74_37	-1	known	frame_shift_del	c.52	p.M18fs	0.102	NULL	pfscan_Znf_C2H2	-	no_errors	ZNF704	HGNC	ENSG00000164684				561	0	0	482	77	13.7746
TEX10	0	genome.wustl.edu	37	9	103111633	103111633	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	9	103111633	103111633	T	-	DEL	TEX10	ENST00000374902	human	ensembl	74_37	-1	known	frame_shift_del	c.13	p.R5fs	1.000	NULL	pfam_IPI1/TEX10,superfamily_ARM-type_fold,pfscan_HEAT_type_2	-	no_errors	TEX10	HGNC	ENSG00000136891				45	0	0	18	5	21.7391
SMC2	0	genome.wustl.edu	37	9	106889604	106889604	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	9	106889604	106889604	A	-	DEL	SMC2	ENST00000286398	human	ensembl	74_37	+1	known	frame_shift_del	c.2633	p.E880fs	1.000	pfam_RecF/RecN/SMC_N,superfamily_P-loop_NTPase	pfam_RecF/RecN/SMC_N,pfam_SMC_hinge,superfamily_P-loop_NTPase,superfamily_SMC_hinge,smart_SMC_hinge	-	no_errors	SMC2	HGNC	ENSG00000136824				191	0	0	121	17	12.3188
HSPA5	0	genome.wustl.edu	37	9	128001567	128001567	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	9	128001567	128001567	C	-	DEL	HSPA5	ENST00000324460	human	ensembl	74_37	-1	known	frame_shift_del	c.649	p.E217fs	1.000	pfam_Hsp_70_fam,pfam_MreB_Mrl	pfam_Hsp_70_fam,pfam_MreB_Mrl,prints_Hsp_70_fam	-	no_errors	HSPA5	HGNC	ENSG00000044574				109	0	0	71	12	14.4578
C9orf78	0	genome.wustl.edu	37	9	132595850	132595850	+	RNA	DEL	T	T	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	9	132595850	132595850	T	-	DEL	C9orf78	ENST00000461762	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.032	-	-	-	no_errors	C9orf78	HGNC	ENSG00000136819				89	0	0	80	9	10.1124
PRRC2B	0	genome.wustl.edu	37	9	134350640	134350640	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	9	134350640	134350640	C	-	DEL	PRRC2B	ENST00000357304	human	ensembl	74_37	+1	known	frame_shift_del	c.3124	p.M1044fs	0.992	NULL	pfam_BAT2_N	-	no_errors	PRRC2B	HGNC	ENSG00000130723				64	0	0	34	6	15
RAPGEF1	0	genome.wustl.edu	37	9	134464198	134464198	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	9	134464198	134464198	C	-	DEL	RAPGEF1	ENST00000372190	human	ensembl	74_37	-1	known	frame_shift_del	c.2539	p.V847fs	0.997	superfamily_Ras_GEF_dom,smart_Ras-like_Gua-exchang_fac_N	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,superfamily_Ras_GEF_dom,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RAPGEF1	HGNC	ENSG00000107263				20	0	0	7	4	36.3636
SETX	0	genome.wustl.edu	37	9	135158548	135158549	+	RNA	DEL	AA	AA	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	9	135158548	135158549	AA	-	DEL	SETX	ENST00000474172	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.010:0.003	-	-	-	no_errors	SETX	HGNC	ENSG00000107290				30	0	0	6	9	60
TTF1	0	genome.wustl.edu	37	9	135277202	135277202	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	9	135277202	135277202	T	-	DEL	TTF1	ENST00000334270	human	ensembl	74_37	-1	known	frame_shift_del	c.1007	p.K336fs	0.912	NULL	superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	TTF1	HGNC	ENSG00000125482				342	0	0	223	46	17.1004
SURF1	0	genome.wustl.edu	37	9	136221753	136221754	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	9	136221753	136221754	-	T	INS	SURF1	ENST00000371974	human	ensembl	74_37	-1	known	frame_shift_ins	c.166_165	p.A55fs	0.000:0.000	NULL	pfam_Surf1/Shy1,pfscan_Surf1/Shy1	-	no_errors	SURF1	HGNC	ENSG00000148290				281	0	0	187	23	10.9524
BRD3	0	genome.wustl.edu	37	9	136918529	136918529	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	9	136918529	136918529	G	-	DEL	BRD3	ENST00000303407	human	ensembl	74_37	-1	known	frame_shift_del	c.71	p.P24fs	1.000	superfamily_Bromodomain	pfam_Bromodomain,superfamily_Bromodomain,smart_Bromodomain,prints_Bromodomain,pfscan_Bromodomain	-	no_errors	BRD3	HGNC	ENSG00000169925				75	0	0	46	12	20.6897
WDR5	0	genome.wustl.edu	37	9	137023052	137023054	+	In_Frame_Del	DEL	CAT	CAT	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	CAT	CAT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	9	137023052	137023054	CAT	-	DEL	WDR5	ENST00000358625	human	ensembl	74_37	+1	known	in_frame_del	c.942_944	p.I316in_frame_del	1.000:1.000:1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,pfam_TIF_beta_prop-like,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	WDR5	HGNC	ENSG00000196363				155	0	0	96	11	10.2804
SNAPC4	0	genome.wustl.edu	37	9	139275256	139275257	+	Frame_Shift_Del	DEL	CT	CT	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	CT	CT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	9	139275256	139275257	CT	-	DEL	SNAPC4	ENST00000298532	human	ensembl	74_37	-1	known	frame_shift_del	c.2435_2434	p.R812fs	1.000:1.000	NULL	pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	SNAPC4	HGNC	ENSG00000165684				84	0	0	62	12	16.2162
DPP7	0	genome.wustl.edu	37	9	140006327	140006327	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	9	140006327	140006327	C	-	DEL	DPP7	ENST00000371579	human	ensembl	74_37	-1	known	frame_shift_del	c.1205	p.G402fs	0.000	pfam_Peptidase_S28	pfam_Peptidase_S28,pfam_AB_hydrolase_1	-	no_errors	DPP7	HGNC	ENSG00000176978				37	0	0	25	8	24.2424
MLLT3	0	genome.wustl.edu	37	9	20346394	20346396	+	RNA	DEL	AAA	AAA	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	AAA	AAA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	9	20346394	20346396	AAA	-	DEL	MLLT3	ENST00000380323	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.015:0.015:0.227	-	-	-	no_errors	MLLT3	HGNC	ENSG00000171843				60	0	0	47	3	6
ENSG00000265194	0	genome.wustl.edu	37	9	21861903	21861903	+	RNA	DEL	T	T	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	9	21861903	21861903	T	-	DEL	ENSG00000265194	ENST00000581788	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RP11-70L8.4	Clone_based_vega_gene	ENSG00000265194				79	0	0	36	18	33.3333
LINGO2	0	genome.wustl.edu	37	9	27948946	27948946	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	9	27948946	27948946	T	-	DEL	LINGO2	ENST00000308675	human	ensembl	74_37	-1	known	frame_shift_del	c.1724	p.N575fs	1.000	NULL	pfam_Ig_I-set,pfam_Leu-rich_rpt,pfam_Ig_V-set,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	LINGO2	HGNC	ENSG00000174482				156	0	0	90	17	15.8879
ZCCHC7	0	genome.wustl.edu	37	9	37357250	37357250	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	9	37357250	37357250	A	-	DEL	ZCCHC7	ENST00000336755	human	ensembl	74_37	+1	known	frame_shift_del	c.1617	p.K542fs	1.000	NULL	pfam_Znf_CCHC,superfamily_Znf_CCHC,smart_Znf_CCHC,pfscan_Znf_CCHC	-	no_errors	ZCCHC7	HGNC	ENSG00000147905				76	0	0	44	9	16.9811
GNAQ	0	genome.wustl.edu	37	9	80537249	80537250	+	Frame_Shift_Del	DEL	CT	CT	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	CT	CT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	9	80537249	80537250	CT	-	DEL	GNAQ	ENST00000286548	human	ensembl	74_37	-1	known	frame_shift_del	c.149_148	p.S50fs	1.000:1.000	pfam_Gprotein_alpha_su,superfamily_P-loop_NTPase,smart_Gprotein_alpha_su,prints_Gprotein_alpha_su	pfam_Gprotein_alpha_su,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,superfamily_GproteinA_insert,smart_Gprotein_alpha_su,prints_Gprotein_alpha_su,prints_Gprotein_alpha_Q,prints_Fungi_Gprotein_alpha	-	no_errors	GNAQ	HGNC	ENSG00000156052				277	0	0	179	25	12.2549
TLE1	0	genome.wustl.edu	37	9	84225192	84225192	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	9	84225192	84225192	G	-	DEL	TLE1	ENST00000376499	human	ensembl	74_37	-1	known	frame_shift_del	c.1274	p.P425fs	1.000	NULL	pfam_Groucho/TLE_N,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Groucho_enhance	-	no_errors	TLE1	HGNC	ENSG00000196781				53	0	0	21	5	19.2308
ZCCHC6	0	genome.wustl.edu	37	9	88937823	88937823	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	9	88937823	88937823	A	-	DEL	ZCCHC6	ENST00000375963	human	ensembl	74_37	-1	known	frame_shift_del	c.2842	p.Y948fs	1.000	NULL	pfam_PAP_assoc,pfam_Znf_CCHC,superfamily_Znf_CCHC,smart_Znf_U1,smart_Znf_CCHC,pfscan_Znf_CCHC	-	no_errors	ZCCHC6	HGNC	ENSG00000083223				92	0	0	59	8	11.9403
BTK	0	genome.wustl.edu	37	X	100608059	100608062	+	RNA	DEL	AAAA	AAAA	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	AAAA	AAAA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	X	100608059	100608062	AAAA	-	DEL	BTK	ENST00000470069	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.006:0.016:0.023:0.027	-	-	-	no_errors	BTK	HGNC	ENSG00000010671				53	0	0	38	14	26.9231
BTK	0	genome.wustl.edu	37	X	100617587	100617587	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	X	100617587	100617587	T	-	DEL	BTK	ENST00000308731	human	ensembl	74_37	-1	known	frame_shift_del	c.482	p.N161fs	1.000	pfam_Znf_Btk_motif,smart_Znf_Btk_motif,pfscan_Znf_Btk_motif,prints_Znf_Btk_motif	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_SH2,pfam_SH3_domain,pfam_Znf_Btk_motif,pfam_Pleckstrin_homology,pfam_SH3_2,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_Pleckstrin_homology,smart_Znf_Btk_motif,smart_SH3_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Pleckstrin_homology,pfscan_SH2,pfscan_SH3_domain,pfscan_Znf_Btk_motif,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH3_domain,prints_SH2,prints_Znf_Btk_motif	-	no_errors	BTK	HGNC	ENSG00000010671				296	1	0.3367	203	48	19.1235
UTP14A	0	genome.wustl.edu	37	X	129055622	129055622	+	RNA	DEL	A	A	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	X	129055622	129055622	A	-	DEL	UTP14A	ENST00000498179	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	UTP14A	HGNC	ENSG00000156697				38	0	0	23	5	17.8571
HTATSF1	0	genome.wustl.edu	37	X	135593604	135593604	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	X	135593604	135593604	A	-	DEL	HTATSF1	ENST00000218364	human	ensembl	74_37	+1	known	frame_shift_del	c.1700	p.N568fs	0.942	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	HTATSF1	HGNC	ENSG00000102241				142	0	0	103	20	16.2602
SAT1	0	genome.wustl.edu	37	X	23802147	23802147	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	X	23802147	23802147	A	-	DEL	SAT1	ENST00000379251	human	ensembl	74_37	+1	known	frame_shift_del	c.439	p.N150fs	0.001	NULL	superfamily_Acyl_CoA_acyltransferase	-	no_errors	SAT1	HGNC	ENSG00000130066				16	0	0	8	5	38.4615
PRRG1	0	genome.wustl.edu	37	X	37312611	37312611	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	X	37312611	37312611	C	-	DEL	PRRG1	ENST00000378628	human	ensembl	74_37	+1	known	frame_shift_del	c.394	p.P134fs	0.109	NULL	pfam_GLA_domain,superfamily_GLA_domain,smart_GLA_domain,pfscan_GLA_domain,prints_GLA_domain	-	no_errors	PRRG1	HGNC	ENSG00000130962				311	2	0.638978	187	51	21.4286
WDR13	0	genome.wustl.edu	37	X	48457035	48457036	+	RNA	DEL	CC	CC	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	CC	CC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	X	48457035	48457036	CC	-	DEL	WDR13	ENST00000479279	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	WDR13	HGNC	ENSG00000101940				22	0	0	16	11	40.7407
CCDC120	0	genome.wustl.edu	37	X	48923062	48923062	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	X	48923062	48923062	G	-	DEL	CCDC120	ENST00000603986	human	ensembl	74_37	+1	known	frame_shift_del	c.865	p.S291fs	1.000	NULL	pfam_DUF3338	-	no_errors	CCDC120	HGNC	ENSG00000147144				42	0	0	33	5	13.1579
IL2RG	0	genome.wustl.edu	37	X	70330449	70330449	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	X	70330449	70330449	T	-	DEL	IL2RG	ENST00000374202	human	ensembl	74_37	-1	known	frame_shift_del	c.359	p.K120fs	0.000	pfam_IL-6_rcpt_alpha-bd,superfamily_Fibronectin_type3	pfam_IL-6_rcpt_alpha-bd,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	IL2RG	HGNC	ENSG00000147168				207	0	0	138	20	12.6582
XIST	0	genome.wustl.edu	37	X	73071941	73071943	+	RNA	DEL	AAA	AAA	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	AAA	AAA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	X	73071941	73071943	AAA	-	DEL	XIST	ENST00000429829	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.531:0.460:0.005	-	-	-	no_errors	XIST	HGNC	ENSG00000229807				19	0	0	12	3	20
ATRX	0	genome.wustl.edu	37	X	76763680	76763681	+	RNA	DEL	AA	AA	-			TCGA-BR-4368-01A-01D-1158-08	TCGA-BR-4368-11A-01D-1158-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0f320a44-6403-4052-a943-34da7c12efd4	c4eb03db-0517-4ea5-af47-2b5bd1dc43af	X	76763680	76763681	AA	-	DEL	ATRX	ENST00000480283	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.003:0.001	-	-	-	no_errors	ATRX	HGNC	ENSG00000085224				17	0	0	11	9	45
