Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
AP4B1	0	genome.wustl.edu	37	1	114437899	114437899	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	1	114437899	114437899	C	T	SNP	AP4B1	ENST00000256658	human	ensembl	74_37	-1	known	missense	c.2008	p.A670T	0.995	pfam_B-adaptin_app_sub_C,superfamily_Coatomer/calthrin_app_sub_C,pirsf_AP_complex_bsu_1_2_4	pfam_Clathrin/coatomer_adapt-like_N,pfam_B-adaptin_app_sub_C,superfamily_ARM-type_fold,superfamily_Coatomer/calthrin_app_sub_C,pirsf_AP_complex_bsu_1_2_4	-	no_errors	AP4B1	HGNC	ENSG00000134262				114	0	0	70	33	32.0388
TDRD10	0	genome.wustl.edu	37	1	154516536	154516536	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	1	154516536	154516536	A	G	SNP	TDRD10	ENST00000368480	human	ensembl	74_37	+1	known	missense	c.601	p.T201A	0.965	pfam_Tudor	pfam_Tudor,pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	TDRD10	HGNC	ENSG00000163239				182	1	0.546448	218	25	10.2881
CD1E	0	genome.wustl.edu	37	1	158324409	158324409	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	1	158324409	158324409	T	G	SNP	CD1E	ENST00000368167	human	ensembl	74_37	+1	known	missense	c.301	p.F101V	0.000	superfamily_MHC_I/II-like_Ag-recog	pfam_Ig_C1-set,superfamily_MHC_I/II-like_Ag-recog,smart_Ig_C1-set,pfscan_Ig-like_dom	-	no_errors	CD1E	HGNC	ENSG00000158488				100	0	0	76	27	26.2136
OR10Z1	0	genome.wustl.edu	37	1	158576892	158576892	+	Silent	SNP	T	T	C			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	1	158576892	158576892	T	C	SNP	OR10Z1	ENST00000361284	human	ensembl	74_37	+1	known	silent	c.664	p.L222	0.489	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR10Z1	HGNC	ENSG00000198967				293	0	0	339	62	15.4613
SPTA1	0	genome.wustl.edu	37	1	158606534	158606534	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	1	158606534	158606534	A	C	SNP	SPTA1	ENST00000368147	human	ensembl	74_37	-1	known	missense	c.5207	p.V1736G	1.000	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_EF-hand_Ca_insen,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_Spectrin/alpha-actinin,smart_SH3_domain,pfscan_EF_hand_dom,pfscan_SH3_domain,prints_Spectrin_alpha_SH3	-	no_errors	SPTA1	HGNC	ENSG00000163554				176	0	0	206	66	24.2647
LOC100131825	0	genome.wustl.edu	37	1	159169651	159169651	+	Splice_Site	SNP	T	T	G			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	1	159169651	159169651	T	G	SNP	LOC100131825	ENST00000415675	human	ensembl	74_37	-1	known	splice_site	c.NULL	NULL	1.000	-	-	-	no_errors	CTA-134P22.2	Clone_based_vega_gene	ENSG00000225670				68	0	0	76	17	18.2796
FCRLA	0	genome.wustl.edu	37	1	161682977	161682977	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	1	161682977	161682977	C	T	SNP	FCRLA	ENST00000367959	human	ensembl	74_37	+1	known	missense	c.956	p.P319L	0.000	NULL	smart_Ig_sub,pfscan_Ig-like_dom	-	no_errors	FCRLA	HGNC	ENSG00000132185				192	0	0	191	85	30.7971
PIGC	0	genome.wustl.edu	37	1	172411186	172411186	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	1	172411186	172411186	G	A	SNP	PIGC	ENST00000258324	human	ensembl	74_37	-1	known	missense	c.577	p.L193F	1.000	pfam_Plno_GlcNAc_GPI2,pirsf_Plno_GlcNAc_GPI2	pfam_Plno_GlcNAc_GPI2,pirsf_Plno_GlcNAc_GPI2	-	no_errors	PIGC	HGNC	ENSG00000135845				81	0	0	99	36	26.6667
TNFSF18	0	genome.wustl.edu	37	1	173010835	173010835	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	1	173010835	173010835	C	T	SNP	TNFSF18	ENST00000404377	human	ensembl	74_37	-1	known	nonsense	c.272	p.W91*	1.000	superfamily_Tumour_necrosis_fac-like_dom	pfam_TNF_dom,superfamily_Tumour_necrosis_fac-like_dom	-	no_errors	TNFSF18	HGNC	ENSG00000120337				212	0	0	236	40	14.4928
C1orf27	0	genome.wustl.edu	37	1	186388262	186388262	+	RNA	SNP	G	G	A			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	1	186388262	186388262	G	A	SNP	C1orf27	ENST00000461662	human	ensembl	74_37	+1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	C1orf27	HGNC	ENSG00000157181				17	0	0	9	4	30.7692
CENPF	0	genome.wustl.edu	37	1	214814102	214814102	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	1	214814102	214814102	G	T	SNP	CENPF	ENST00000366955	human	ensembl	74_37	+1	known	missense	c.2421	p.M807I	0.000	NULL	pfam_Centromere_CenpF_N,pfam_Centromere_CenpF_leu-rich_rpt,pfam_CenpF/LEK1_Rb-prot-bd	-	no_errors	CENPF	HGNC	ENSG00000117724				49	0	0	75	22	22.6804
ESRRG	0	genome.wustl.edu	37	1	216692753	216692753	+	Silent	SNP	C	C	T			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	1	216692753	216692753	C	T	SNP	ESRRG	ENST00000408911	human	ensembl	74_37	-1	known	silent	c.873	p.T291	0.836	superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Nucl_hrmn_rcpt_lig-bd_core,prints_Str_hrmn_rcpt	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,prints_Retinoic_acid_rcpt	-	no_errors	ESRRG	HGNC	ENSG00000196482				59	0	0	55	13	19.1176
EPRS	0	genome.wustl.edu	37	1	220193402	220193402	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	1	220193402	220193402	A	T	SNP	EPRS	ENST00000366923	human	ensembl	74_37	-1	known	missense	c.1277	p.L426Q	1.000	pfam_Glu/Gln-tRNA-synth_Ib_cat-dom,tigrfam_Glu-tRNA-synth_arc/euk	pfam_Glu/Gln-tRNA-synth_Ib_cat-dom,pfam_WHEP-TRS,pfam_Glu/Gln-tRNA-synth_Ib_codon-bd,pfam_aa-tRNA-synt_IIb_cons-dom,pfam_Pro-tRNA_ligase_II_C,pfam_Anticodon-bd,superfamily_Ribosomal_L25/Gln-tRNA_synth,superfamily_Anticodon-bd,superfamily_Pro-tRNA_synth_II,superfamily_S15_NS1_RNA-bd,superfamily_Glutathione-S-Trfase_C-like,smart_Pro-tRNA_ligase_II_C,prints_Glu/Gln-tRNA-synth,prints_Pro-tRNA-ligase_IIa,pfscan_aa-tRNA-synth_II,pfscan_WHEP-TRS,tigrfam_Pro-tRNA-ligase_IIa_arc-type,tigrfam_Glu-tRNA-synth_arc/euk	-	no_errors	EPRS	HGNC	ENSG00000136628				187	0	0	160	75	31.9149
KIAA1804	0	genome.wustl.edu	37	1	233498012	233498012	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	1	233498012	233498012	G	A	SNP	KIAA1804	ENST00000366624	human	ensembl	74_37	+1	known	missense	c.1525	p.D509N	1.000	pirsf_MAPKKK9/10/11	pirsf_MAPKKK9/10/11,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_SH3_domain,pfam_SH3_2,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_SH3_domain,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH3_domain,pfscan_SH3_domain,pfscan_Prot_kinase_dom	-	no_errors	MLK4	Uniprot_gn	ENSG00000143674				110	0	0	126	10	7.35294
AHCTF1	0	genome.wustl.edu	37	1	247054343	247054343	+	Silent	SNP	A	A	G			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	1	247054343	247054343	A	G	SNP	AHCTF1	ENST00000326225	human	ensembl	74_37	-1	known	silent	c.1992	p.N664	0.998	NULL	superfamily_Quinonprotein_ADH-like_supfam	-	no_errors	AHCTF1	HGNC	ENSG00000153207				74	0	0	67	25	27.1739
ZNF670	0	genome.wustl.edu	37	1	247201286	247201286	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	1	247201286	247201286	A	C	SNP	ZNF670	ENST00000366503	human	ensembl	74_37	-1	known	missense	c.635	p.L212R	0.029	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF670	HGNC	ENSG00000135747				82	0	0	73	23	23.9583
OR2L3	0	genome.wustl.edu	37	1	248224727	248224727	+	Silent	SNP	T	T	C			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	1	248224727	248224727	T	C	SNP	OR2L3	ENST00000359959	human	ensembl	74_37	+1	known	silent	c.744	p.T248	0.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2L3	HGNC	ENSG00000198128				279	0	0	364	30	7.61421
SLC9A1	0	genome.wustl.edu	37	1	27434258	27434258	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	1	27434258	27434258	C	T	SNP	SLC9A1	ENST00000263980	human	ensembl	74_37	-1	known	missense	c.1163	p.S388N	1.000	pfam_Cation/H_exchanger,tigrfam_NaH_exchanger	pfam_Cation/H_exchanger,prints_Na/H_exchanger_1,prints_NaH_exchanger,tigrfam_NaH_exchanger	-	no_errors	SLC9A1	HGNC	ENSG00000090020				19	0	0	8	8	50
RBBP4	0	genome.wustl.edu	37	1	33134400	33134400	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	1	33134400	33134400	G	A	SNP	RBBP4	ENST00000492348	human	ensembl	74_37	+1	known	nonsense	c.225	p.W75*	1.000	NULL	pfam_Histone-bd_RBBP4_N	-	no_errors	RBBP4	HGNC	ENSG00000162521				138	0	0	113	45	28.481
TEKT2	0	genome.wustl.edu	37	1	36553335	36553335	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	1	36553335	36553335	T	G	SNP	TEKT2	ENST00000207457	human	ensembl	74_37	+1	known	missense	c.1006	p.Y336D	1.000	pfam_Tektin,superfamily_Prefoldin,prints_Tektin	pfam_Tektin,superfamily_Prefoldin,prints_Tektin	-	no_errors	TEKT2	HGNC	ENSG00000092850				36	0	0	38	5	11.6279
MAP7D1	0	genome.wustl.edu	37	1	36642154	36642154	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	1	36642154	36642154	C	T	SNP	MAP7D1	ENST00000373151	human	ensembl	74_37	+1	known	missense	c.1205	p.P402L	0.000	NULL	pfam_MAP7	-	no_errors	MAP7D1	HGNC	ENSG00000116871				14	0	0	31	3	8.82353
RLF	0	genome.wustl.edu	37	1	40703533	40703533	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	1	40703533	40703533	G	T	SNP	RLF	ENST00000372771	human	ensembl	74_37	+1	known	missense	c.3159	p.R1053S	0.989	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	RLF	HGNC	ENSG00000117000				112	0	0	133	9	6.33803
SLFNL1	0	genome.wustl.edu	37	1	41483646	41483646	+	Silent	SNP	G	G	A			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	1	41483646	41483646	G	A	SNP	SLFNL1	ENST00000302946	human	ensembl	74_37	-1	known	silent	c.618	p.I206	0.737	NULL	pfam_ATPase_AAA-4	-	no_errors	SLFNL1	HGNC	ENSG00000171790				31	0	0	28	19	40.4255
PIK3R3	0	genome.wustl.edu	37	1	46597556	46597556	+	Silent	SNP	C	C	T			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	1	46597556	46597556	C	T	SNP	PIK3R3	ENST00000262741	human	ensembl	74_37	-1	known	silent	c.69	p.S23	1.000	NULL	pfam_SH2,smart_SH2,pfscan_SH2,prints_PI3kinase_P85,prints_SH2	-	no_errors	PIK3R3	HGNC	ENSG00000117461				137	0	0	181	40	18.0995
SLC35D1	0	genome.wustl.edu	37	1	67512967	67512967	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	1	67512967	67512967	T	G	SNP	SLC35D1	ENST00000235345	human	ensembl	74_37	-1	known	missense	c.617	p.K206T	1.000	pfam_Tpt_PEP_trans_dom	pfam_Tpt_PEP_trans_dom	-	no_errors	SLC35D1	HGNC	ENSG00000116704				50	0	0	53	5	8.62069
COL24A1	0	genome.wustl.edu	37	1	86355275	86355275	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	1	86355275	86355275	T	G	SNP	COL24A1	ENST00000370571	human	ensembl	74_37	-1	known	missense	c.2944	p.S982R	0.570	NULL	pfam_Collagen,pfam_Fib_collagen_C,pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,smart_Fib_collagen_C	-	no_errors	COL24A1	HGNC	ENSG00000171502				140	0	0	107	25	18.9394
HFM1	0	genome.wustl.edu	37	1	91850767	91850767	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	1	91850767	91850767	G	A	SNP	HFM1	ENST00000370425	human	ensembl	74_37	-1	known	missense	c.779	p.S260F	0.039	NULL	pfam_Sec63-dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Sec63-dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	HFM1	HGNC	ENSG00000162669				97	0	0	48	17	26.1538
FAM196A	0	genome.wustl.edu	37	10	128974010	128974010	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	10	128974010	128974010	G	A	SNP	FAM196A	ENST00000522781	human	ensembl	74_37	-1	known	missense	c.650	p.S217F	0.000	NULL	NULL	-	no_errors	FAM196A	HGNC	ENSG00000188916				60	0	0	50	11	18.0328
CUBN	0	genome.wustl.edu	37	10	17087092	17087092	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	10	17087092	17087092	T	G	SNP	CUBN	ENST00000377833	human	ensembl	74_37	-1	known	missense	c.3586	p.K1196Q	0.389	pfam_CUB_dom,superfamily_CUB_dom,smart_CUB_dom,pfscan_CUB_dom	pfam_CUB_dom,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,superfamily_CUB_dom,superfamily_Growth_fac_rcpt_N_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_CUB_dom,pfscan_CUB_dom,pfscan_EG-like_dom	-	no_errors	CUBN	HGNC	ENSG00000107611				155	0	0	123	40	24.5399
BTAF1	0	genome.wustl.edu	37	10	93786897	93786897	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	10	93786897	93786897	T	G	SNP	BTAF1	ENST00000265990	human	ensembl	74_37	+1	known	missense	c.5246	p.V1749G	1.000	superfamily_P-loop_NTPase,pfscan_Helicase_C	pfam_DUF3535,pfam_SNF2_N,pfam_HEAT,pfam_Helicase_C,superfamily_ARM-type_fold,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	BTAF1	HGNC	ENSG00000095564				114	1	0.869565	78	45	36.5854
DDI1	0	genome.wustl.edu	37	11	103907674	103907674	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	11	103907674	103907674	G	T	SNP	DDI1	ENST00000302259	human	ensembl	74_37	+1	known	missense	c.124	p.V42F	0.007	pfam_Ubiquitin_dom,smart_Ubiquitin_dom,pfscan_Ubiquitin_supergroup	pfam_Peptidase_aspartic_DDI1-type,pfam_Ubiquitin_dom,pfam_RVP_2,pfam_Pept_A2A_retrovirus_sg,superfamily_Peptidase_aspartic_dom,smart_Ubiquitin_dom,pfscan_Ubiquitin_supergroup	-	no_errors	DDI1	HGNC	ENSG00000170967				259	0	0	334	50	13.0208
HBG1	0	genome.wustl.edu	37	11	5269719	5269719	+	Splice_Site	SNP	T	T	A			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	11	5269719	5269719	T	A	SNP	HBG1	ENST00000330597	human	ensembl	74_37	-1	known	splice_site	c.316-2	e3-2	1.000	-	-	-	no_errors	HBG1	HGNC	ENSG00000213934				44	0	0	26	37	58.7302
OR4C15	0	genome.wustl.edu	37	11	55322842	55322842	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	11	55322842	55322842	A	C	SNP	OR4C15	ENST00000314644	human	ensembl	74_37	+1	known	missense	c.1060	p.I354L	0.009	NULL	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4C15	HGNC	ENSG00000181939				149	0	0	65	135	67.5
OR8H1	0	genome.wustl.edu	37	11	56057755	56057755	+	Silent	SNP	T	T	G			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	11	56057755	56057755	T	G	SNP	OR8H1	ENST00000313022	human	ensembl	74_37	-1	known	silent	c.784	p.R262	0.001	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR8H1	HGNC	ENSG00000181693				148	0	0	73	126	63.3166
OR52N4	0	genome.wustl.edu	37	11	5776694	5776694	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	11	5776694	5776694	A	G	SNP	OR52N4	ENST00000317254	human	ensembl	74_37	+1	known	missense	c.724	p.T242A	0.996	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR52N4	HGNC	ENSG00000181074				269	0	0	97	253	72.2857
OVCH2	0	genome.wustl.edu	37	11	7722004	7722004	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	11	7722004	7722004	C	T	SNP	OVCH2	ENST00000454689	human	ensembl	74_37	-1	known	missense	c.740	p.R247Q	0.016	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1	pfam_Peptidase_S1,pfam_CUB_dom,superfamily_Trypsin-like_Pept_dom,superfamily_CUB_dom,smart_Peptidase_S1,smart_CUB_dom,pfscan_CUB_dom,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	OVCH2	HGNC	ENSG00000183378				26	0	0	10	35	77.7778
FAT3	0	genome.wustl.edu	37	11	92616518	92616518	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	11	92616518	92616518	G	A	SNP	FAT3	ENST00000298047	human	ensembl	74_37	+1	known	missense	c.12896	p.C4299Y	1.000	NULL	pfam_Cadherin,pfam_Laminin_G,pfam_EGF-like_Ca-bd_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,smart_EG-like_dom,smart_Laminin_G,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT3	HGNC	ENSG00000165323				93	0	0	32	80	71.4286
SH2B3	0	genome.wustl.edu	37	12	111884628	111884628	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	12	111884628	111884628	G	A	SNP	SH2B3	ENST00000341259	human	ensembl	74_37	+1	putative	missense	c.804	p.M268I	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology	pfam_Phe_ZIP,pfam_SH2,pfam_Pleckstrin_homology,superfamily_Phe_ZIP,smart_Pleckstrin_homology,smart_SH2,pfscan_SH2,prints_SH2	-	no_errors	SH2B3	HGNC	ENSG00000111252				45	0	0	43	5	10.4167
SLCO1B7	0	genome.wustl.edu	37	12	21200087	21200087	+	Silent	SNP	T	T	G			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	12	21200087	21200087	T	G	SNP	SLCO1B7	ENST00000554957	human	ensembl	74_37	+1	known	silent	c.1071	p.T357	0.993	pfam_OA_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_OA_transporter	pfam_OA_transporter,pfam_MFS,pfam_Kazal_dom,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_OA_transporter	-	no_errors	SLCO1B7	HGNC	ENSG00000205754				40	0	0	34	6	15
KCNA5	0	genome.wustl.edu	37	12	5154807	5154807	+	Silent	SNP	G	G	A			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	12	5154807	5154807	G	A	SNP	KCNA5	ENST00000252321	human	ensembl	74_37	+1	known	silent	c.1494	p.S498	0.002	pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom,pfam_PKD1_2_channel,prints_K_chnl	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,pfam_PKD1_2_channel,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv1.5,prints_K_chnl_volt-dep_Kv1,prints_K_chnl_volt-dep_Kv	-	no_errors	KCNA5	HGNC	ENSG00000130037				182	0	0	215	66	23.4875
GNB3	0	genome.wustl.edu	37	12	6954785	6954785	+	Silent	SNP	G	G	A			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	12	6954785	6954785	G	A	SNP	GNB3	ENST00000229264	human	ensembl	74_37	+1	known	silent	c.735	p.S245	0.027	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pirsf_Guanine_nucleotide-bd_bsu,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pirsf_Guanine_nucleotide-bd_bsu,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Gprotein_B,prints_G-protein_beta_WD-40_rep	-	no_errors	GNB3	HGNC	ENSG00000111664				162	0	0	183	65	26.2097
CD163L1	0	genome.wustl.edu	37	12	7528460	7528460	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	12	7528460	7528460	G	A	SNP	CD163L1	ENST00000313599	human	ensembl	74_37	-1	known	missense	c.2522	p.A841V	0.002	pfam_SRCR,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_SRCR	pfam_SRCR,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_SRCR,prints_SRCR	-	no_errors	CD163L1	HGNC	ENSG00000177675				147	0	0	174	29	14.2857
SLC9A7P1	0	genome.wustl.edu	37	12	98849655	98849655	+	RNA	SNP	C	C	A			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	12	98849655	98849655	C	A	SNP	SLC9A7P1	ENST00000554295	human	ensembl	74_37	-1	putative	rna	NULL	NULL	1.000	-	-	-	no_errors	SLC9A7P1	HGNC	ENSG00000227825				108	0	0	85	24	22.0183
SACS	0	genome.wustl.edu	37	13	23905608	23905608	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	13	23905608	23905608	A	C	SNP	SACS	ENST00000382292	human	ensembl	74_37	-1	known	missense	c.12407	p.L4136R	1.000	NULL	pfam_HEPN,pfam_Ubiquitin_dom,superfamily_HATPase_ATP-bd,superfamily_DnaJ_domain,smart_HEPN,pfscan_HEPN,pfscan_DnaJ_domain,pfscan_Ubiquitin_supergroup	-	no_errors	SACS	HGNC	ENSG00000151835				188	1	0.529101	180	64	26.2295
DCLK1	0	genome.wustl.edu	37	13	36686252	36686252	+	Silent	SNP	A	A	C			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	13	36686252	36686252	A	C	SNP	DCLK1	ENST00000360631	human	ensembl	74_37	-1	known	silent	c.477	p.A159	0.052	NULL	pfam_Prot_kinase_dom,pfam_Doublecortin_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Doublecortin_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Doublecortin_dom,pfscan_Prot_kinase_dom	-	no_errors	DCLK1	HGNC	ENSG00000133083				169	0	0	186	29	13.4884
SPG20	0	genome.wustl.edu	37	13	36888456	36888456	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	13	36888456	36888456	T	C	SNP	SPG20	ENST00000355182	human	ensembl	74_37	-1	known	missense	c.1391	p.E464G	1.000	pfam_Senescence/spartin	pfam_Senescence/spartin,pfam_MIT,smart_MIT	-	no_errors	SPG20	HGNC	ENSG00000133104				259	0	0	214	68	24.1135
FOXO1	0	genome.wustl.edu	37	13	41134248	41134248	+	Silent	SNP	T	T	C			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	13	41134248	41134248	T	C	SNP	FOXO1	ENST00000379561	human	ensembl	74_37	-1	known	silent	c.1380	p.G460	0.423	NULL	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXO1	HGNC	ENSG00000150907				77	0	0	74	35	32.1101
RTL1	0	genome.wustl.edu	37	14	101350961	101350961	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	14	101350961	101350961	C	A	SNP	RTL1	ENST00000534062	human	ensembl	74_37	-1	known	missense	c.165	p.K55N	0.004	NULL	pfam_Retrotrans_gag_dom,superfamily_Peptidase_aspartic_dom	-	no_errors	RTL1	HGNC	ENSG00000254656				45	0	0	25	15	37.5
COCH	0	genome.wustl.edu	37	14	31349900	31349900	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	14	31349900	31349900	A	T	SNP	COCH	ENST00000216361	human	ensembl	74_37	+1	known	missense	c.589	p.I197F	1.000	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_VWF_A,pfam_LCCL,superfamily_LCCL,smart_LCCL,smart_VWF_A,pfscan_LCCL,pfscan_VWF_A	-	no_errors	COCH	HGNC	ENSG00000100473				282	0	0	247	39	13.6364
EXOC5	0	genome.wustl.edu	37	14	57675476	57675476	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	14	57675476	57675476	G	C	SNP	EXOC5	ENST00000413566	human	ensembl	74_37	-1	known	missense	c.1978	p.L660V	1.000	pfam_Sec10-like	pfam_Sec10-like	-	no_errors	EXOC5	HGNC	ENSG00000070367				64	0	0	55	37	40.2174
ARID4A	0	genome.wustl.edu	37	14	58832906	58832906	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	14	58832906	58832906	C	G	SNP	ARID4A	ENST00000355431	human	ensembl	74_37	+1	known	missense	c.3481	p.P1161A	0.994	NULL	pfam_RBB1NT,pfam_ARID/BRIGHT_DNA-bd,pfam_Tudor-knot,superfamily_ARID/BRIGHT_DNA-bd,superfamily_Chromodomain-like,smart_Tudor,smart_ARID/BRIGHT_DNA-bd,smart_Chromo_domain/shadow,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID4A	HGNC	ENSG00000032219				261	0	0	207	18	8
SNRPN	0	genome.wustl.edu	37	15	25219561	25219561	+	RNA	SNP	A	A	C			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	15	25219561	25219561	A	C	SNP	SNRPN	ENST00000553597	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SNRPN	HGNC	ENSG00000128739				181	0	0	166	40	19.4175
SNHG14	0	genome.wustl.edu	37	15	25492381	25492381	+	RNA	SNP	G	G	T			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	15	25492381	25492381	G	T	SNP	SNHG14	ENST00000453082	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SNHG14	HGNC	ENSG00000224078				81	0	0	65	22	25.2874
PAQR5	0	genome.wustl.edu	37	15	69696009	69696009	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	15	69696009	69696009	G	T	SNP	PAQR5	ENST00000340965	human	ensembl	74_37	+1	known	nonsense	c.841	p.E281*	0.046	NULL	pfam_HlyIII-related	-	no_errors	PAQR5	HGNC	ENSG00000137819				148	0	0	158	12	7.05882
ACAN	0	genome.wustl.edu	37	15	89392845	89392845	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	15	89392845	89392845	G	A	SNP	ACAN	ENST00000439576	human	ensembl	74_37	+1	known	missense	c.1909	p.V637I	0.971	pfam_Link,superfamily_C-type_lectin_fold,smart_Link,pfscan_Link	pfam_Link,pfam_C-type_lectin,pfam_Ig_V-set,pfam_Sushi_SCR_CCP,pfam_EG-like_dom,superfamily_C-type_lectin_fold,superfamily_Sushi_SCR_CCP,smart_Ig_sub,smart_Ig_V-set_subgr,smart_Link,smart_EG-like_dom,smart_C-type_lectin,smart_Sushi_SCR_CCP,pfscan_EG-like_dom,pfscan_C-type_lectin,pfscan_Link,pfscan_Sushi_SCR_CCP,pfscan_Ig-like_dom,prints_Link	-	no_errors	ACAN	HGNC	ENSG00000157766				25	0	0	20	9	31.0345
SNX29	0	genome.wustl.edu	37	16	12662459	12662459	+	Silent	SNP	C	C	T			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	16	12662459	12662459	C	T	SNP	SNX29	ENST00000306030	human	ensembl	74_37	+1	known	silent	c.1260	p.N420	0.958	NULL	pfam_Phox,superfamily_Phox,smart_Phox,pfscan_Phox	-	no_errors	SNX29	HGNC	ENSG00000048471				57	0	0	46	24	34.2857
GPR139	0	genome.wustl.edu	37	16	20043132	20043132	+	Silent	SNP	C	C	T			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	16	20043132	20043132	C	T	SNP	GPR139	ENST00000570682	human	ensembl	74_37	-1	known	silent	c.987	p.P329	0.086	NULL	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srw,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	GPR139	HGNC	ENSG00000180269				302	0	0	249	78	23.8532
ACSM2B	0	genome.wustl.edu	37	16	20559473	20559473	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	16	20559473	20559473	C	A	SNP	ACSM2B	ENST00000329697	human	ensembl	74_37	-1	known	nonsense	c.1009	p.G337*	0.211	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig	-	no_errors	ACSM2B	HGNC	ENSG00000066813				364	0	0	256	131	33.8501
MMP2	0	genome.wustl.edu	37	16	55516874	55516874	+	Silent	SNP	G	G	C			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	16	55516874	55516874	G	C	SNP	MMP2	ENST00000219070	human	ensembl	74_37	+1	known	silent	c.207	p.V69	1.000	pfam_Peptidoglycan-bd-like,superfamily_Peptidoglycan-bd-like	pfam_Pept_M10_metallopeptidase,pfam_FN_type2_col-bd,pfam_Hemopexin-like_repeat,pfam_Peptidoglycan-bd-like,superfamily_Hemopexin-like_dom,superfamily_Kringle-like,superfamily_Peptidoglycan-bd-like,smart_Peptidase_Metallo,smart_FN_type2_col-bd,smart_Hemopexin-like_repeat,pfscan_FN_type2_col-bd,prints_Pept_M10A	-	no_errors	MMP2	HGNC	ENSG00000087245				119	0	0	109	54	33.1288
ADAT1	0	genome.wustl.edu	37	16	75636996	75636996	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	16	75636996	75636996	G	A	SNP	ADAT1	ENST00000307921	human	ensembl	74_37	-1	known	missense	c.1363	p.P455S	1.000	pfam_A_deamin,smart_A_deamin,pfscan_A_deamin	pfam_A_deamin,smart_A_deamin,pfscan_A_deamin	-	no_errors	ADAT1	HGNC	ENSG00000065457				644	0	0	570	123	17.7489
MYH8	0	genome.wustl.edu	37	17	10303964	10303964	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	17	10303964	10303964	T	A	SNP	MYH8	ENST00000403437	human	ensembl	74_37	-1	known	missense	c.3478	p.T1160S	0.990	pfam_Myosin_tail	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,superfamily_t-SNARE,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH8	HGNC	ENSG00000133020				266	0	0	283	26	8.41424
ANKRD13B	0	genome.wustl.edu	37	17	27936244	27936244	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	17	27936244	27936244	G	A	SNP	ANKRD13B	ENST00000394859	human	ensembl	74_37	+1	known	missense	c.706	p.A236T	0.997	pfam_ANKRD13	pfam_ANKRD13,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Ubiquitin-int_motif,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Ubiquitin-int_motif	-	no_errors	ANKRD13B	HGNC	ENSG00000198720				65	0	0	119	23	16.1972
ATAD5	0	genome.wustl.edu	37	17	29167747	29167747	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	17	29167747	29167747	G	A	SNP	ATAD5	ENST00000321990	human	ensembl	74_37	+1	known	missense	c.2189	p.R730H	1.000	NULL	pfam_ATPase_AAA_core,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	ATAD5	HGNC	ENSG00000176208				198	0	0	171	26	13.198
ACACA	0	genome.wustl.edu	37	17	35766476	35766476	+	RNA	SNP	A	A	C			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	17	35766476	35766476	A	C	SNP	ACACA	ENST00000587545	human	ensembl	74_37	-1	putative	rna	NULL	NULL	1.000	-	-	-	no_errors	ACACA	HGNC	ENSG00000132142				87	0	0	269	32	10.6312
FMNL1	0	genome.wustl.edu	37	17	43322779	43322779	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	17	43322779	43322779	C	T	SNP	FMNL1	ENST00000328118	human	ensembl	74_37	+1	known	missense	c.2888	p.A963V	1.000	pfam_FH2_Formin,smart_FH2_Formin	pfam_FH2_Formin,pfam_FH3_dom,pfam_GTPase-bd,superfamily_ARM-type_fold,smart_FH2_Formin	-	no_errors	FMNL1	HGNC	ENSG00000184922				123	0	0	139	32	18.7135
CA10	0	genome.wustl.edu	37	17	50008436	50008436	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	17	50008436	50008436	G	A	SNP	CA10	ENST00000340813	human	ensembl	74_37	-1	known	missense	c.211	p.R71W	1.000	pfam_Carbonic_anhydrase_a,superfamily_Carbonic_anhydrase_a,pfscan_Carbonic_anhydrase_a	pfam_Carbonic_anhydrase_a,superfamily_Carbonic_anhydrase_a,pfscan_Carbonic_anhydrase_a	-	no_errors	CA10	HGNC	ENSG00000154975				264	0	0	773	79	9.2723
DDX42	0	genome.wustl.edu	37	17	61889335	61889335	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	17	61889335	61889335	G	A	SNP	DDX42	ENST00000389924	human	ensembl	74_37	+1	known	missense	c.1442	p.G481E	1.000	superfamily_P-loop_NTPase	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX42	HGNC	ENSG00000198231				484	1	0.206186	343	82	19.2941
GLP2R	0	genome.wustl.edu	37	17	9745873	9745873	+	Silent	SNP	C	C	T			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	17	9745873	9745873	C	T	SNP	GLP2R	ENST00000262441	human	ensembl	74_37	+1	known	silent	c.444	p.N148	0.998	pfam_GPCR_2_extracellular_dom,smart_GPCR_2_extracellular_dom,pfscan_GPCR_2_extracellular_dom	pfam_GPCR_2_secretin-like,pfam_GPCR_2_extracellular_dom,smart_GPCR_2_extracellular_dom,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	-	no_errors	GLP2R	HGNC	ENSG00000065325				116	0	0	107	29	21.3235
PSMA8	0	genome.wustl.edu	37	18	23759077	23759077	+	Silent	SNP	A	A	C			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	18	23759077	23759077	A	C	SNP	PSMA8	ENST00000308268	human	ensembl	74_37	+1	known	silent	c.661	p.R221	1.000	NULL	pfam_Proteasome_sua/b,pfam_Proteasome_asu_N,smart_Proteasome_asu_N	-	no_errors	PSMA8	HGNC	ENSG00000154611				88	0	0	31	27	46.5517
SETBP1	0	genome.wustl.edu	37	18	42530045	42530045	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	18	42530045	42530045	G	C	SNP	SETBP1	ENST00000282030	human	ensembl	74_37	+1	known	missense	c.740	p.S247T	1.000	NULL	smart_AT_hook_DNA-bd_motif	-	no_errors	SETBP1	HGNC	ENSG00000152217				153	1	0.649351	70	53	43.0894
EPB41L3	0	genome.wustl.edu	37	18	5419834	5419834	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	18	5419834	5419834	T	C	SNP	EPB41L3	ENST00000341928	human	ensembl	74_37	-1	known	missense	c.1382	p.Q461R	1.000	pirsf_Band_41_protein	pirsf_Band_41_protein,pfam_Band_4.1_C,pfam_SAB_dom,pfam_FERM_N,pfam_FERM_PH-like_C,pfam_FERM_central,pfam_FERM-adjacent,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain,prints_Band_41_fam,prints_Ez/rad/moesin_like	-	no_errors	EPB41L3	HGNC	ENSG00000082397				94	0	0	196	48	19.6721
SAMD1	0	genome.wustl.edu	37	19	14200075	14200075	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	19	14200075	14200075	C	T	SNP	SAMD1	ENST00000533683	human	ensembl	74_37	-1	novel	missense	c.736	p.E246K	0.997	NULL	pfam_SAM_type1,pfam_Pointed_dom,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	-	no_errors	SAMD1	HGNC	ENSG00000141858				9	0	0	7	3	30
ZNF208	0	genome.wustl.edu	37	19	22156444	22156444	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	19	22156444	22156444	C	T	SNP	ZNF208	ENST00000397126	human	ensembl	74_37	-1	novel	missense	c.1392	p.M464I	0.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF208	HGNC	ENSG00000160321				145	0	0	124	32	20.5128
UPK1A	0	genome.wustl.edu	37	19	36166802	36166802	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	19	36166802	36166802	G	A	SNP	UPK1A	ENST00000379013	human	ensembl	74_37	+1	known	missense	c.529	p.A177T	0.363	pfam_Tetraspanin/Peripherin,superfamily_Tetraspanin_EC2	pfam_Tetraspanin/Peripherin,superfamily_Tetraspanin_EC2,prints_Tetraspanin	-	no_errors	UPK1A	HGNC	ENSG00000105668				87	0	0	190	38	16.6667
ZNF260	0	genome.wustl.edu	37	19	37006121	37006121	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	19	37006121	37006121	C	T	SNP	ZNF260	ENST00000523638	human	ensembl	74_37	-1	known	missense	c.20	p.S7N	0.998	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF260	HGNC	ENSG00000254004				51	0	0	83	11	11.7021
ZNF461	0	genome.wustl.edu	37	19	37130918	37130918	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	19	37130918	37130918	T	C	SNP	ZNF461	ENST00000588268	human	ensembl	74_37	-1	known	missense	c.329	p.K110R	0.002	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF461	HGNC	ENSG00000197808				110	0	0	236	36	13.2353
GGN	0	genome.wustl.edu	37	19	38877004	38877004	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	19	38877004	38877004	G	A	SNP	GGN	ENST00000334928	human	ensembl	74_37	-1	known	missense	c.898	p.R300C	0.063	NULL	NULL	-	no_errors	GGN	HGNC	ENSG00000179168				28	0	0	73	13	15.1163
FCGBP	0	genome.wustl.edu	37	19	40392045	40392045	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	19	40392045	40392045	C	T	SNP	FCGBP	ENST00000221347	human	ensembl	74_37	-1	known	missense	c.8341	p.V2781M	0.301	pfam_TIL_dom,superfamily_TIL_dom	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,smart_Fol_N,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_EG-like_dom,smart_VWF_C,smart_VWC_out	-	no_errors	FCGBP	HGNC	ENSG00000090920				67	0	0	74	15	16.8539
NAPA-AS1	0	genome.wustl.edu	37	19	47996781	47996781	+	RNA	SNP	G	G	A			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	19	47996781	47996781	G	A	SNP	NAPA-AS1	ENST00000593284	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.025	-	-	-	no_errors	NAPA-AS1	HGNC	ENSG00000268061				161	0	0	188	65	25.6917
GYS1	0	genome.wustl.edu	37	19	49489176	49489176	+	Silent	SNP	G	G	A			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	19	49489176	49489176	G	A	SNP	GYS1	ENST00000323798	human	ensembl	74_37	-1	known	silent	c.609	p.T203	1.000	pfam_Glycogen_synth,pfam_Starch_synth_cat_dom	pfam_Glycogen_synth,pfam_Glyco_trans_1,pfam_Starch_synth_cat_dom	-	no_errors	GYS1	HGNC	ENSG00000104812				130	0	0	140	31	18.1287
ZNF613	0	genome.wustl.edu	37	19	52439311	52439311	+	RNA	SNP	C	C	T			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	19	52439311	52439311	C	T	SNP	ZNF613	ENST00000593395	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	ZNF613	HGNC	ENSG00000176024				16	0	0	23	3	11.5385
LILRA1	0	genome.wustl.edu	37	19	55107775	55107775	+	Silent	SNP	G	G	A			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	19	55107775	55107775	G	A	SNP	LILRA1	ENST00000251372	human	ensembl	74_37	+1	known	silent	c.1080	p.A360	0.000	smart_Ig_sub,smart_Ig_sub2,pirsf_A1B_glyco/leuk_Ig-like_rcpt	smart_Ig_sub,smart_Ig_sub2,pirsf_A1B_glyco/leuk_Ig-like_rcpt,pfscan_Ig-like_dom	-	no_errors	LILRA1	HGNC	ENSG00000104974				176	0	0	326	57	14.8825
ZSCAN18	0	genome.wustl.edu	37	19	58601615	58601615	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	19	58601615	58601615	G	A	SNP	ZSCAN18	ENST00000600404	human	ensembl	74_37	-1	known	missense	c.188	p.A63V	0.006	NULL	pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZSCAN18	HGNC	ENSG00000121413				124	0	0	223	42	15.8491
MUC16	0	genome.wustl.edu	37	19	9084024	9084024	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	19	9084024	9084024	C	A	SNP	MUC16	ENST00000397910	human	ensembl	74_37	-1	known	missense	c.7791	p.L2597F	0.054	NULL	pfam_SEA_dom,smart_SEA_dom,pfscan_SEA_dom	-	no_errors	MUC16	HGNC	ENSG00000181143				141	0	0	91	24	20.8696
RNF149	0	genome.wustl.edu	37	2	101893708	101893708	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	2	101893708	101893708	T	A	SNP	RNF149	ENST00000295317	human	ensembl	74_37	-1	known	missense	c.1195	p.I399F	0.000	NULL	pfam_Protease-assoc_domain,pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF149	HGNC	ENSG00000163162				47	0	0	29	12	29.2683
CNTNAP5	0	genome.wustl.edu	37	2	124999958	124999958	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	2	124999958	124999958	A	C	SNP	CNTNAP5	ENST00000431078	human	ensembl	74_37	+1	known	missense	c.369	p.E123D	1.000	pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,smart_Coagulation_fac_5/8-C_type_dom,pfscan_Coagulation_fac_5/8-C_type_dom	pfam_Laminin_G,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,superfamily_ConA-like_lec_gl_sf,superfamily_Fibrinogen_a/b/g_C_dom,smart_Coagulation_fac_5/8-C_type_dom,smart_Laminin_G,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_Laminin_G	-	no_errors	CNTNAP5	HGNC	ENSG00000155052				47	0	0	45	3	6.25
SNTG2	0	genome.wustl.edu	37	2	1271173	1271173	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	2	1271173	1271173	T	A	SNP	SNTG2	ENST00000308624	human	ensembl	74_37	+1	known	missense	c.1114	p.L372M	0.938	NULL	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	SNTG2	HGNC	ENSG00000172554				15	0	0	14	6	30
ERCC3	0	genome.wustl.edu	37	2	128051203	128051203	+	Silent	SNP	C	C	A			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	2	128051203	128051203	C	A	SNP	ERCC3	ENST00000285398	human	ensembl	74_37	-1	known	silent	c.120	p.S40	0.039	NULL	pfam_Helicase/UvrB_dom,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,prints_Helicase_Ercc3,tigrfam_Helicase_Ercc3	-	no_errors	ERCC3	HGNC	ENSG00000163161				139	0	0	170	11	6.07735
NCKAP5	0	genome.wustl.edu	37	2	133539979	133539979	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	2	133539979	133539979	A	G	SNP	NCKAP5	ENST00000317721	human	ensembl	74_37	-1	known	missense	c.4405	p.S1469P	0.946	NULL	NULL	-	no_errors	NCKAP5	HGNC	ENSG00000176771				68	0	0	107	13	10.8333
CCNT2	0	genome.wustl.edu	37	2	135711860	135711860	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	2	135711860	135711860	C	G	SNP	CCNT2	ENST00000264157	human	ensembl	74_37	+1	known	missense	c.1835	p.S612C	1.000	NULL	pfam_Cyclin_N,superfamily_Cyclin-like,smart_Cyclin-like	-	no_errors	CCNT2	HGNC	ENSG00000082258				177	0	0	138	82	37.2727
THSD7B	0	genome.wustl.edu	37	2	138373777	138373777	+	Silent	SNP	T	T	G			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	2	138373777	138373777	T	G	SNP	THSD7B	ENST00000272643	human	ensembl	74_37	+1	known	silent	c.3465	p.T1155	0.997	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	-	no_errors	THSD7B	HGNC	ENSG00000144229				222	0	0	199	20	9.13242
SCN3A	0	genome.wustl.edu	37	2	165984255	165984255	+	Silent	SNP	G	G	A			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	2	165984255	165984255	G	A	SNP	SCN3A	ENST00000283254	human	ensembl	74_37	-1	known	silent	c.3279	p.F1093	1.000	pfam_Na_trans_assoc	pfam_Ion_trans_dom,pfam_DUF3451,pfam_Na_trans_assoc,pfam_PKD1_2_channel,pfscan_IQ_motif_EF-hand-BS,prints_Na_channel_asu,prints_PKD_2	-	no_errors	SCN3A	HGNC	ENSG00000153253				132	0	0	138	11	7.38255
GAD1	0	genome.wustl.edu	37	2	171687621	171687621	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	2	171687621	171687621	T	G	SNP	GAD1	ENST00000358196	human	ensembl	74_37	+1	known	missense	c.466	p.L156V	1.000	pfam_PyrdxlP-dep_de-COase,superfamily_PyrdxlP-dep_Trfase	pfam_PyrdxlP-dep_de-COase,pfam_Aminotrans_V/Cys_dSase,pfam_ArAA_b-elim_lyase/Thr_aldolase,superfamily_PyrdxlP-dep_Trfase	-	no_errors	GAD1	HGNC	ENSG00000128683				165	0	0	158	61	27.8539
GPR155	0	genome.wustl.edu	37	2	175335232	175335232	+	Silent	SNP	G	G	A			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	2	175335232	175335232	G	A	SNP	GPR155	ENST00000295500	human	ensembl	74_37	-1	known	silent	c.912	p.G304	0.000	pfam_Auxin_eff	pfam_Auxin_eff,pfam_DEP_dom,smart_DEP_dom,pfscan_DEP_dom	-	no_errors	GPR155	HGNC	ENSG00000163328				114	0	0	94	49	34.2657
PRKRA	0	genome.wustl.edu	37	2	179301024	179301024	+	Nonsense_Mutation	SNP	A	A	T			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	2	179301024	179301024	A	T	SNP	PRKRA	ENST00000325748	human	ensembl	74_37	-1	known	nonsense	c.632	p.L211*	0.998	NULL	pfam_dsRNA-bd_dom,smart_dsRNA-bd_dom,pfscan_dsRNA-bd_dom	-	no_errors	PRKRA	HGNC	ENSG00000180228				206	0	0	173	62	26.383
ORMDL1	0	genome.wustl.edu	37	2	190636564	190636564	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	2	190636564	190636564	G	A	SNP	ORMDL1	ENST00000325795	human	ensembl	74_37	-1	known	missense	c.391	p.L131F	1.000	pfam_ORMDL,pirsf_ORMDL	pfam_ORMDL,pirsf_ORMDL	-	no_errors	ORMDL1	HGNC	ENSG00000128699				110	0	0	114	16	12.3077
NDUFS1	0	genome.wustl.edu	37	2	207014614	207014614	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	2	207014614	207014614	G	T	SNP	NDUFS1	ENST00000455934	human	ensembl	74_37	-1	known	missense	c.231	p.F77L	1.000	pfam_2Fe-2S_ferredoxin-type,superfamily_2Fe-2S_ferredoxin-type,pfscan_2Fe-2S_ferredoxin-type,tigrfam_NADH_UbQ_OxRdtase_Gsu	pfam_Mopterin_OxRdtase,pfam_NADH_UbQ_OxRdtase_Gsu_4Fe4S-bd,pfam_NuoG_C,pfam_2Fe-2S_ferredoxin-type,superfamily_2Fe-2S_ferredoxin-type,smart_NADH_UbQ_OxRdtase_Gsu_4Fe4S-bd,pfscan_2Fe-2S_ferredoxin-type,tigrfam_NADH_UbQ_OxRdtase_Gsu	-	no_errors	NDUFS1	HGNC	ENSG00000023228				176	0	0	192	15	7.24638
PTH2R	0	genome.wustl.edu	37	2	209324631	209324631	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	2	209324631	209324631	T	G	SNP	PTH2R	ENST00000272847	human	ensembl	74_37	+1	known	missense	c.926	p.L309R	1.000	pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like	pfam_GPCR_2_secretin-like,pfam_GPCR_2_extracellular_dom,smart_GPCR_2_extracellular_dom,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	-	no_errors	PTH2R	HGNC	ENSG00000144407				235	0	0	200	87	30.3136
CPS1	0	genome.wustl.edu	37	2	211512654	211512654	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	2	211512654	211512654	A	G	SNP	CPS1	ENST00000430249	human	ensembl	74_37	+1	known	missense	c.3227	p.K1076R	1.000	pfam_CarbamoylP_synth_lsu_N,superfamily_PreATP-grasp_dom,tigrfam_CarbamoylP_synth_lsu	pfam_CbamoylP_synth_lsu-like_ATP-bd,pfam_CarbamoylP_synth_ssu_N,pfam_CarbamoylP_synth_lsu_oligo,pfam_GATASE,pfam_CarbamoylP_synth_lsu_N,pfam_MGS-like_dom,pfam_ATP-grasp_carboxylate-amine,pfam_Dala_Dala_lig_C,superfamily_CarbamoylP_synth_lsu_oligo,superfamily_CarbamoylP_synth_ssu_N,superfamily_PreATP-grasp_dom,superfamily_MGS-like_dom,smart_MGS-like_dom,pfscan_ATP-grasp,prints_CbamoylP_synth_lsu_CPSase_dom,tigrfam_CarbamoylP_synth_lsu,tigrfam_CarbamoylP_synth_ssu	-	no_errors	CPS1	HGNC	ENSG00000021826				146	0	0	135	53	28.1915
SPEG	0	genome.wustl.edu	37	2	220315878	220315878	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	2	220315878	220315878	G	A	SNP	SPEG	ENST00000312358	human	ensembl	74_37	+1	novel	missense	c.2134	p.V712M	1.000	NULL	pfam_Ig_I-set,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	SPEG	HGNC	ENSG00000072195				328	0	0	288	125	30.2663
SPHKAP	0	genome.wustl.edu	37	2	228882722	228882722	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	2	228882722	228882722	C	G	SNP	SPHKAP	ENST00000392056	human	ensembl	74_37	-1	known	missense	c.2848	p.D950H	1.000	NULL	pfam_AKAP_110_C	-	no_errors	SPHKAP	HGNC	ENSG00000153820				212	0	0	234	70	23.0263
ZFP36L2	0	genome.wustl.edu	37	2	43452657	43452657	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	2	43452657	43452657	T	C	SNP	ZFP36L2	ENST00000282388	human	ensembl	74_37	-1	known	missense	c.286	p.T96A	0.015	pfam_Tis11B_N	pfam_Tis11B_N,pfam_Znf_CCCH,smart_Znf_CCCH	-	no_errors	ZFP36L2	HGNC	ENSG00000152518				10	0	0	14	4	22.2222
PAPOLG	0	genome.wustl.edu	37	2	61021178	61021178	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	2	61021178	61021178	T	C	SNP	PAPOLG	ENST00000238714	human	ensembl	74_37	+1	known	missense	c.1841	p.V614A	1.000	pirsf_PolyA_polymerase	pfam_PolA_pol_cen_dom,pfam_PolA_pol_RNA-bd_dom,pfam_Nucleotidyltransferase,superfamily_NuclTrfase_I_C,pirsf_PolyA_polymerase	-	no_errors	PAPOLG	HGNC	ENSG00000115421				157	1	0.632911	147	61	29.3269
PROKR1	0	genome.wustl.edu	37	2	68882442	68882442	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	2	68882442	68882442	G	A	SNP	PROKR1	ENST00000303786	human	ensembl	74_37	+1	known	missense	c.916	p.V306M	0.943	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_NPY_rcpt	-	no_errors	PROKR1	HGNC	ENSG00000169618				105	0	0	103	13	11.2069
REG3G	0	genome.wustl.edu	37	2	79255020	79255020	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	2	79255020	79255020	T	G	SNP	REG3G	ENST00000272324	human	ensembl	74_37	+1	known	missense	c.421	p.L141V	0.000	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	-	no_errors	REG3G	HGNC	ENSG00000143954				182	0	0	188	78	29.3233
EIF2AK3	0	genome.wustl.edu	37	2	88889965	88889965	+	Silent	SNP	G	G	A			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	2	88889965	88889965	G	A	SNP	EIF2AK3	ENST00000303236	human	ensembl	74_37	-1	known	silent	c.1161	p.Y387	0.999	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Quinonprotein_ADH-like_supfam,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	EIF2AK3	HGNC	ENSG00000172071				203	0	0	184	66	26.4
TEKT4	0	genome.wustl.edu	37	2	95540714	95540714	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	2	95540714	95540714	C	T	SNP	TEKT4	ENST00000295201	human	ensembl	74_37	+1	known	missense	c.907	p.R303W	0.028	pfam_Tektin	pfam_Tektin,prints_Tektin	-	no_errors	TEKT4	HGNC	ENSG00000163060				28	0	0	29	9	23.6842
NEURL2	0	genome.wustl.edu	37	20	44519034	44519034	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	20	44519034	44519034	A	T	SNP	NEURL2	ENST00000372518	human	ensembl	74_37	-1	known	missense	c.597	p.D199E	0.961	pfscan_Neu_Z	pfam_Neu_Z,pfam_SOCS_C,smart_Neu_Z,smart_SOCS_C,pfscan_Neu_Z,pfscan_SOCS_C	-	no_errors	NEURL2	HGNC	ENSG00000124257				99	0	0	202	34	14.4068
HELZ2	0	genome.wustl.edu	37	20	62191324	62191324	+	Silent	SNP	C	C	A			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	20	62191324	62191324	C	A	SNP	HELZ2	ENST00000467148	human	ensembl	74_37	-1	known	silent	c.7782	p.V2594	0.999	superfamily_P-loop_NTPase	superfamily_P-loop_NTPase	-	no_errors	HELZ2	HGNC	ENSG00000130589				115	0	0	254	35	12.1107
ABHD16B	0	genome.wustl.edu	37	20	62493204	62493204	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	20	62493204	62493204	A	G	SNP	ABHD16B	ENST00000369916	human	ensembl	74_37	+1	known	missense	c.311	p.H104R	1.000	NULL	pfam_AB_hydrolase_1	-	no_errors	ABHD16B	HGNC	ENSG00000183260				10	0	0	32	7	17.9487
GRIK1	0	genome.wustl.edu	37	21	31045320	31045320	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	21	31045320	31045320	C	T	SNP	GRIK1	ENST00000535441	human	ensembl	74_37	-1	known	missense	c.709	p.A237T	0.996	pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I	pfam_ANF_lig-bd_rcpt,pfam_Iontro_glu_rcpt,pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,superfamily_Peripla_BP_I,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIK1	HGNC	ENSG00000171189				307	0	0	202	43	17.551
KCNE2	0	genome.wustl.edu	37	21	35742989	35742989	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	21	35742989	35742989	C	G	SNP	KCNE2	ENST00000290310	human	ensembl	74_37	+1	known	missense	c.212	p.T71S	0.998	pfam_K_chnl_volt-dep_bsu_KCNE	pfam_K_chnl_volt-dep_bsu_KCNE,prints_K_chnl_volt-dep_bsu_KCNE2	-	no_errors	KCNE2	HGNC	ENSG00000159197				73	0	0	50	23	31.5068
COL6A1	0	genome.wustl.edu	37	21	47422312	47422312	+	Silent	SNP	C	C	T			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	21	47422312	47422312	C	T	SNP	COL6A1	ENST00000361866	human	ensembl	74_37	+1	known	silent	c.2247	p.I749	0.971	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_VWF_A,pfam_Collagen,smart_VWF_A,pfscan_VWF_A	-	no_errors	COL6A1	HGNC	ENSG00000142156				13	0	0	34	5	12.8205
GGT3P	0	genome.wustl.edu	37	22	18769261	18769261	+	Splice_Site	SNP	T	T	C			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	22	18769261	18769261	T	C	SNP	GGT3P	ENST00000412448	human	ensembl	74_37	-1	known	splice_site	c.NULL	NULL	1.000	-	-	-	no_errors	GGT3P	HGNC	ENSG00000197421				15	0	0	23	6	20.6897
RTN4R	0	genome.wustl.edu	37	22	20229416	20229416	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	22	20229416	20229416	G	A	SNP	RTN4R	ENST00000043402	human	ensembl	74_37	-1	known	missense	c.1240	p.R414C	0.922	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	RTN4R	HGNC	ENSG00000040608				57	0	0	54	9	14.2857
CSF2RB	0	genome.wustl.edu	37	22	37319374	37319374	+	Silent	SNP	G	G	T			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	22	37319374	37319374	G	T	SNP	CSF2RB	ENST00000262825	human	ensembl	74_37	+1	known	silent	c.165	p.R55	0.000	pirsf_IL3_rcpt_beta,superfamily_Fibronectin_type3	pirsf_IL3_rcpt_beta,pfam_Fibronectin_type3,pfam_IL-6_rcpt_alpha-bd,pfam_Interferon_alpha/beta_rcpt_bsu,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	CSF2RB	HGNC	ENSG00000100368				63	0	0	64	25	28.0899
PICK1	0	genome.wustl.edu	37	22	38469813	38469813	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	22	38469813	38469813	G	A	SNP	PICK1	ENST00000356976	human	ensembl	74_37	+1	known	missense	c.817	p.E273K	1.000	pfam_AH_dom,pfam_BAR_dom,pfscan_AH_dom	pfam_AH_dom,pfam_PDZ,pfam_BAR_dom,superfamily_PDZ,smart_PDZ,pfscan_AH_dom,pfscan_PDZ	-	no_errors	PICK1	HGNC	ENSG00000100151				155	0	0	128	44	25.5814
MKL1	0	genome.wustl.edu	37	22	40820311	40820311	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	22	40820311	40820311	C	T	SNP	MKL1	ENST00000355630	human	ensembl	74_37	-1	known	missense	c.376	p.E126K	1.000	NULL	pfam_RPEL_repeat,pfam_SAP_dom,smart_RPEL_repeat,smart_SAP_dom,pfscan_RPEL_repeat,pfscan_SAP_dom	-	no_errors	MKL1	HGNC	ENSG00000196588				202	0	0	172	86	33.3333
ARHGAP31	0	genome.wustl.edu	37	3	119132796	119132796	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	3	119132796	119132796	C	A	SNP	ARHGAP31	ENST00000264245	human	ensembl	74_37	+1	known	missense	c.2020	p.P674T	0.297	NULL	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP31	HGNC	ENSG00000031081				263	0	0	280	47	14.3731
POPDC2	0	genome.wustl.edu	37	3	119367093	119367093	+	Silent	SNP	G	G	A			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	3	119367093	119367093	G	A	SNP	POPDC2	ENST00000341124	human	ensembl	74_37	-1	known	silent	c.1023	p.T341	1.000	NULL	pfam_Popeye_prot,superfamily_cNMP-bd-like	-	no_errors	POPDC2	HGNC	ENSG00000121577				30	0	0	40	7	14.8936
TRH	0	genome.wustl.edu	37	3	129694763	129694763	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	3	129694763	129694763	C	T	SNP	TRH	ENST00000302649	human	ensembl	74_37	+1	known	missense	c.104	p.T35M	0.000	pfam_TRH,pirsf_TRH	pfam_TRH,pirsf_TRH	-	no_errors	TRH	HGNC	ENSG00000170893				38	0	0	17	4	19.0476
CPNE4	0	genome.wustl.edu	37	3	131442333	131442333	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	3	131442333	131442333	T	G	SNP	CPNE4	ENST00000502818	human	ensembl	74_37	-1	known	missense	c.371	p.K124T	1.000	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom	pfam_Copine,pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,smart_VWF_A,pfscan_C2_dom	-	no_errors	CPNE4	HGNC	ENSG00000196353				392	0	0	223	127	36.2857
SLC6A6	0	genome.wustl.edu	37	3	14520637	14520637	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	3	14520637	14520637	C	T	SNP	SLC6A6	ENST00000360861	human	ensembl	74_37	+1	known	missense	c.1495	p.R499W	0.999	pfam_Na/ntran_symport,pfscan_Na/ntran_symport	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport,prints_Na/ntran_symport_taurine	-	no_errors	SLC6A6	HGNC	ENSG00000131389				173	0	0	128	26	16.8831
KCNMB2	0	genome.wustl.edu	37	3	178560470	178560470	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	3	178560470	178560470	T	G	SNP	KCNMB2	ENST00000358316	human	ensembl	74_37	+1	known	missense	c.453	p.N151K	0.997	pfam_K_chnl_Ca-activ_BK_bsu	pfam_K_chnl_Ca-activ_BK_bsu,pfam_KCNMB2_ball_chain_dom,prints_K_chnl_Ca-activ_BK_bsu	-	no_errors	KCNMB2	HGNC	ENSG00000197584				147	0	0	96	62	39.2405
KLHL24	0	genome.wustl.edu	37	3	183396874	183396874	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	3	183396874	183396874	G	A	SNP	KLHL24	ENST00000242810	human	ensembl	74_37	+1	known	missense	c.1603	p.E535K	1.000	smart_Kelch_1,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BACK,pfam_BTB_POZ,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL24	HGNC	ENSG00000114796				157	0	0	110	19	14.7287
CHL1	0	genome.wustl.edu	37	3	403458	403458	+	Silent	SNP	C	C	T			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	3	403458	403458	C	T	SNP	CHL1	ENST00000256509	human	ensembl	74_37	+1	known	silent	c.1383	p.C461	0.013	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	CHL1	HGNC	ENSG00000134121				233	1	0.42735	185	30	13.9535
TCAIM	0	genome.wustl.edu	37	3	44434444	44434444	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	3	44434444	44434444	C	A	SNP	TCAIM	ENST00000342649	human	ensembl	74_37	+1	known	missense	c.670	p.H224N	0.586	NULL	NULL	-	no_errors	TCAIM	HGNC	ENSG00000179152				117	0	0	99	31	23.8462
KLHDC8B	0	genome.wustl.edu	37	3	49212502	49212502	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	3	49212502	49212502	G	A	SNP	KLHDC8B	ENST00000332780	human	ensembl	74_37	+1	known	nonsense	c.774	p.W258*	1.000	pfam_Kelch_1,smart_Kelch_1	pfam_Kelch_1,smart_Kelch_1	-	no_errors	KLHDC8B	HGNC	ENSG00000185909				96	0	0	106	21	16.5354
PDE12	0	genome.wustl.edu	37	3	57542655	57542655	+	Silent	SNP	C	C	T			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	3	57542655	57542655	C	T	SNP	PDE12	ENST00000311180	human	ensembl	74_37	+1	known	silent	c.549	p.L183	0.759	NULL	pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase	-	no_errors	PDE12	HGNC	ENSG00000174840				122	0	0	114	27	19.1489
PDHB	0	genome.wustl.edu	37	3	58419403	58419403	+	Silent	SNP	C	C	T			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	3	58419403	58419403	C	T	SNP	PDHB	ENST00000302746	human	ensembl	74_37	-1	known	silent	c.51	p.G17	1.000	NULL	pfam_Transketolase-like_Pyr-bd,pfam_Transketolase_C,superfamily_Transketo_C/Pyr-ferredox_oxred,smart_Transketolase-like_Pyr-bd	-	no_errors	PDHB	HGNC	ENSG00000168291				29	0	0	21	7	25
HTR1F	0	genome.wustl.edu	37	3	88040723	88040723	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	3	88040723	88040723	A	G	SNP	HTR1F	ENST00000319595	human	ensembl	74_37	+1	known	missense	c.824	p.E275G	0.999	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_5HT1F_rcpt,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,prints_5HT1F_rcpt,prints_GPCR_Rhodpsn,prints_5HT_rcpt,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	HTR1F	HGNC	ENSG00000179097				67	0	0	46	8	14.8148
TRMT10A	0	genome.wustl.edu	37	4	100470429	100470429	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	4	100470429	100470429	A	C	SNP	TRMT10A	ENST00000273962	human	ensembl	74_37	-1	known	missense	c.836	p.V279G	0.977	pirsf_tRNA_MeTfrase_TRM10	pfam_tRNA_m1G_MeTrfase,pirsf_tRNA_MeTfrase_TRM10	-	no_errors	TRMT10A	HGNC	ENSG00000145331				233	0	0	142	51	26.4249
FAT4	0	genome.wustl.edu	37	4	126411219	126411219	+	Silent	SNP	G	G	A			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	4	126411219	126411219	G	A	SNP	FAT4	ENST00000394329	human	ensembl	74_37	+1	known	silent	c.13242	p.L4414	1.000	superfamily_ConA-like_lec_gl_sf	pfam_Cadherin,pfam_Laminin_G,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,superfamily_Cadherin-like,superfamily_ConA-like_lec_gl_sf,smart_Cadherin,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT4	HGNC	ENSG00000196159				339	0	0	275	34	11.0032
KIAA0922	0	genome.wustl.edu	37	4	154525488	154525488	+	Silent	SNP	G	G	A			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	4	154525488	154525488	G	A	SNP	KIAA0922	ENST00000409959	human	ensembl	74_37	+1	known	silent	c.3324	p.L1108	1.000	NULL	pfam_DUF3651_TMEM131	-	no_errors	KIAA0922	HGNC	ENSG00000121210				131	0	0	83	34	29.0598
TRIML1	0	genome.wustl.edu	37	4	189068336	189068336	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	4	189068336	189068336	A	C	SNP	TRIML1	ENST00000332517	human	ensembl	74_37	+1	known	missense	c.1217	p.K406T	0.187	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl_sf,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,prints_Butyrophylin	pfam_SPRY_rcpt,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl_sf,smart_Znf_RING,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	TRIML1	HGNC	ENSG00000184108				272	1	0.3663	161	41	20.297
GRXCR1	0	genome.wustl.edu	37	4	42895288	42895288	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	4	42895288	42895288	T	G	SNP	GRXCR1	ENST00000399770	human	ensembl	74_37	+1	known	missense	c.5	p.L2R	0.423	NULL	pfam_Glutaredoxin,superfamily_Thioredoxin-like_fold,superfamily_HSP_DnaJ_Cys-rich_dom	-	no_errors	GRXCR1	HGNC	ENSG00000215203				153	0	0	95	47	33.0986
CORIN	0	genome.wustl.edu	37	4	47682178	47682178	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	4	47682178	47682178	T	G	SNP	CORIN	ENST00000273857	human	ensembl	74_37	-1	known	missense	c.1112	p.K371T	1.000	pirsf_Peptidase_S1A_corin,pfam_LDrepeatLR_classA_rpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,prints_LDrepeatLR_classA_rpt,pfscan_LDrepeatLR_classA_rpt	pirsf_Peptidase_S1A_corin,pfam_Peptidase_S1,pfam_LDrepeatLR_classA_rpt,pfam_Frizzled_dom,superfamily_Trypsin-like_Pept_dom,superfamily_Frizzled_dom,superfamily_LDrepeatLR_classA_rpt,superfamily_Srcr_rcpt-rel,smart_Frizzled_dom,smart_LDrepeatLR_classA_rpt,smart_Srcr_rcpt-rel,smart_Peptidase_S1,prints_LDrepeatLR_classA_rpt,prints_Peptidase_S1A,pfscan_Frizzled_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_Peptidase_S1	-	no_errors	CORIN	HGNC	ENSG00000145244				74	0	0	44	26	37.1429
EVC2	0	genome.wustl.edu	37	4	5617166	5617166	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	4	5617166	5617166	C	T	SNP	EVC2	ENST00000344408	human	ensembl	74_37	-1	known	missense	c.2812	p.E938K	0.279	NULL	pfam_Limbin	-	no_errors	EVC2	HGNC	ENSG00000173040				122	0	0	63	34	35.0515
KCNN2	0	genome.wustl.edu	37	5	113740479	113740479	+	Silent	SNP	C	C	T			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	5	113740479	113740479	C	T	SNP	KCNN2	ENST00000264773	human	ensembl	74_37	+1	known	silent	c.927	p.C309	1.000	NULL	pfam_K_chnl_Ca-activ_SK,pfam_CaM-bd_dom,pfam_2pore_dom_K_chnl_dom,superfamily_CaM-bd_dom,prints_K_chnl_Ca-activ_SK	-	no_errors	KCNN2	HGNC	ENSG00000080709				308	0	0	233	38	14.0221
PCDHA3	0	genome.wustl.edu	37	5	140182956	140182956	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	5	140182956	140182956	C	T	SNP	PCDHA3	ENST00000522353	human	ensembl	74_37	+1	known	missense	c.2174	p.A725V	0.007	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA3	HGNC	ENSG00000255408				275	0	0	292	28	8.75
PCDHAC1	0	genome.wustl.edu	37	5	140307553	140307553	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	5	140307553	140307553	T	A	SNP	PCDHAC1	ENST00000253807	human	ensembl	74_37	+1	known	missense	c.1076	p.I359N	1.000	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHAC1	HGNC	ENSG00000248383				160	0	0	128	43	25.1462
PCDHB2	0	genome.wustl.edu	37	5	140476674	140476674	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	5	140476674	140476674	A	C	SNP	PCDHB2	ENST00000194155	human	ensembl	74_37	+1	known	missense	c.2300	p.K767T	0.948	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB2	HGNC	ENSG00000112852				124	0	0	127	31	19.6203
PCDHB5	0	genome.wustl.edu	37	5	140516111	140516111	+	Silent	SNP	C	C	T			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	5	140516111	140516111	C	T	SNP	PCDHB5	ENST00000231134	human	ensembl	74_37	+1	known	silent	c.1095	p.A365	0.003	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB5	HGNC	ENSG00000113209				200	0	0	179	17	8.67347
PCDHGA1	0	genome.wustl.edu	37	5	140712418	140712418	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	5	140712418	140712418	C	T	SNP	PCDHGA1	ENST00000517417	human	ensembl	74_37	+1	known	missense	c.2167	p.R723C	0.002	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA1	HGNC	ENSG00000204956				155	0	0	175	28	13.7931
LARP1	0	genome.wustl.edu	37	5	154183812	154183812	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	5	154183812	154183812	C	T	SNP	LARP1	ENST00000336314	human	ensembl	74_37	+1	known	missense	c.2260	p.H754Y	1.000	NULL	pfam_Lupus_La_RNA-bd,smart_Lupus_La_RNA-bd,smart_DM15,pfscan_Lupus_La_RNA-bd	-	no_errors	LARP1	HGNC	ENSG00000155506				254	0	0	193	31	13.8393
GABRA1	0	genome.wustl.edu	37	5	161300185	161300185	+	Silent	SNP	A	A	C			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	5	161300185	161300185	A	C	SNP	GABRA1	ENST00000023897	human	ensembl	74_37	+1	known	silent	c.318	p.G106	0.994	pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,prints_GABAAa_rcpt,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABAAa_rcpt,prints_GABAA_rcpt,prints_GABBAa1_rcpt,prints_Neur_channel,prints_GABBAg_rcpt,tigrfam_Neur_channel	-	no_errors	GABRA1	HGNC	ENSG00000022355				185	0	0	166	14	7.77778
GFPT2	0	genome.wustl.edu	37	5	179729482	179729482	+	Silent	SNP	G	G	A			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	5	179729482	179729482	G	A	SNP	GFPT2	ENST00000253778	human	ensembl	74_37	-1	known	silent	c.1945	p.L649	1.000	pfam_SIS,tigrfam_GlmS_trans	pfam_SIS,pfam_GATase_dom,tigrfam_GlmS_trans	-	no_errors	GFPT2	HGNC	ENSG00000131459				111	0	0	119	21	15
SPEF2	0	genome.wustl.edu	37	5	35705878	35705878	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	5	35705878	35705878	T	C	SNP	SPEF2	ENST00000356031	human	ensembl	74_37	+1	known	missense	c.2633	p.L878P	0.016	superfamily_P-loop_NTPase	pfam_DUF1042,pfam_Adenylate_kin,pfam_HATC_dom_C,superfamily_P-loop_NTPase,superfamily_CH-domain,pfscan_CH-domain	-	no_errors	SPEF2	HGNC	ENSG00000152582				33	0	0	31	12	27.907
LIFR	0	genome.wustl.edu	37	5	38527279	38527279	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	5	38527279	38527279	G	C	SNP	LIFR	ENST00000263409	human	ensembl	74_37	-1	known	missense	c.375	p.F125L	0.989	superfamily_Fibronectin_type3	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	LIFR	HGNC	ENSG00000113594				44	0	0	33	4	10.8108
HCN1	0	genome.wustl.edu	37	5	45262335	45262335	+	Silent	SNP	G	G	A			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	5	45262335	45262335	G	A	SNP	HCN1	ENST00000303230	human	ensembl	74_37	-1	known	silent	c.2361	p.S787	0.205	NULL	pfam_Ion_trans_N,pfam_cNMP-bd_dom,pfam_Ion_trans_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG/ELK/ERG	-	no_errors	HCN1	HGNC	ENSG00000164588				113	0	0	121	16	11.6788
ADAMTS16	0	genome.wustl.edu	37	5	5303848	5303848	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	5	5303848	5303848	A	C	SNP	ADAMTS16	ENST00000274181	human	ensembl	74_37	+1	known	missense	c.3155	p.K1052T	0.993	pfscan_Thrombospondin_1_rpt	pfam_ADAM_spacer1,pfam_Peptidase_M12B_N,pfam_Peptidase_M12B,pfam_Thrombospondin_1_rpt,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS16	HGNC	ENSG00000145536				73	0	0	48	11	18.6441
ADAMTS16	0	genome.wustl.edu	37	5	5319202	5319202	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	5	5319202	5319202	A	G	SNP	ADAMTS16	ENST00000274181	human	ensembl	74_37	+1	known	missense	c.3626	p.K1209R	0.704	pfam_PLAC,pfscan_PLAC	pfam_ADAM_spacer1,pfam_Peptidase_M12B_N,pfam_Peptidase_M12B,pfam_Thrombospondin_1_rpt,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS16	HGNC	ENSG00000145536				37	0	0	19	7	26.9231
PIK3R1	0	genome.wustl.edu	37	5	67591121	67591121	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	5	67591121	67591121	C	T	SNP	PIK3R1	ENST00000396611	human	ensembl	74_37	+1	known	nonsense	c.1714	p.Q572*	1.000	prints_PI3kinase_P85	pfam_SH2,pfam_RhoGAP_dom,pfam_SH3_2,superfamily_Rho_GTPase_activation_prot,superfamily_SH3_domain,superfamily_Guanylate-bd_C,smart_SH3_domain,smart_RhoGAP_dom,smart_SH2,pfscan_SH2,pfscan_SH3_domain,pfscan_RhoGAP_dom,prints_PI3kinase_P85,prints_SH2	-	no_errors	PIK3R1	HGNC	ENSG00000145675				171	0	0	103	38	26.9504
GPR98	0	genome.wustl.edu	37	5	90119348	90119348	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	5	90119348	90119348	G	C	SNP	GPR98	ENST00000405460	human	ensembl	74_37	+1	known	missense	c.16303	p.G5435R	1.000	NULL	pfam_Calx_beta,pfam_EPTP,pfam_GPCR_2_secretin-like,pfam_GPS_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Gal_Oxase/kelch_b-propeller,smart_Calx_beta,pfscan_EAR,pfscan_GPS_dom,pfscan_GPCR_2-like	-	no_errors	GPR98	HGNC	ENSG00000164199				104	1	0.952381	87	9	9.375
MIR548A2	0	genome.wustl.edu	37	6	135560344	135560344	+	RNA	SNP	G	G	A			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	6	135560344	135560344	G	A	SNP	MIR548A2	ENST00000384956	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.008	-	-	-	no_errors	MIR548A2	HGNC	ENSG00000207689				70	0	0	69	9	11.5385
SERAC1	0	genome.wustl.edu	37	6	158540190	158540190	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	6	158540190	158540190	T	G	SNP	SERAC1	ENST00000367104	human	ensembl	74_37	-1	known	missense	c.1179	p.K393N	1.000	pfam_PGAP1-like	pfam_PGAP1-like,superfamily_ARM-type_fold	-	no_errors	SERAC1	HGNC	ENSG00000122335				19	0	0	25	4	13.7931
HIST1H2BG	0	genome.wustl.edu	37	6	26216771	26216771	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	6	26216771	26216771	C	G	SNP	HIST1H2BG	ENST00000244601	human	ensembl	74_37	-1	known	missense	c.101	p.R34P	1.000	pfam_Histone_core_D,superfamily_Histone-fold,smart_Histone_H2B	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2B,prints_Histone_H2B	-	no_errors	HIST1H2BG	HGNC	ENSG00000187990				340	0	0	277	63	18.5294
SCAND3	0	genome.wustl.edu	37	6	28554203	28554203	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	6	28554203	28554203	C	T	SNP	SCAND3	ENST00000452236	human	ensembl	74_37	-1	known	missense	c.292	p.E98K	1.000	pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,pfscan_Tscrpt_reg_SCAN	pfam_Tscrpt_reg_SCAN,pfam_Integrase_cat-core,pfam_HATC_dom_C,superfamily_Retrov_capsid_C,superfamily_RNaseH-like_dom,smart_Tscrpt_reg_SCAN,pfscan_Integrase_cat-core,pfscan_Tscrpt_reg_SCAN	-	no_errors	SCAND3	HGNC	ENSG00000232040				218	0	0	223	31	12.2047
SCAND3	0	genome.wustl.edu	37	6	28554204	28554204	+	Silent	SNP	C	C	A			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	6	28554204	28554204	C	A	SNP	SCAND3	ENST00000452236	human	ensembl	74_37	-1	known	silent	c.291	p.L97	1.000	pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,pfscan_Tscrpt_reg_SCAN	pfam_Tscrpt_reg_SCAN,pfam_Integrase_cat-core,pfam_HATC_dom_C,superfamily_Retrov_capsid_C,superfamily_RNaseH-like_dom,smart_Tscrpt_reg_SCAN,pfscan_Integrase_cat-core,pfscan_Tscrpt_reg_SCAN	-	no_errors	SCAND3	HGNC	ENSG00000232040				221	0	0	223	30	11.8577
EHMT2	0	genome.wustl.edu	37	6	31852223	31852223	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	6	31852223	31852223	T	A	SNP	EHMT2	ENST00000395728	human	ensembl	74_37	-1	known	missense	c.2888	p.K963M	1.000	NULL	pfam_Ankyrin_rpt,pfam_SET_dom,pfam_Pre-SET_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Pre-SET_Zn-bd_sub,smart_SET_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SET_dom,pfscan_Pre-SET_dom,prints_Ankyrin_rpt	-	no_errors	EHMT2	HGNC	ENSG00000204371				208	0	0	226	40	15.0376
TFAP2B	0	genome.wustl.edu	37	6	50803904	50803904	+	Silent	SNP	G	G	A			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	6	50803904	50803904	G	A	SNP	TFAP2B	ENST00000263046	human	ensembl	74_37	+1	known	silent	c.759	p.S253	0.981	pfam_TF_AP2_C	pfam_TF_AP2_C,prints_TF_AP2_beta,prints_TF_AP2_C	-	no_errors	TFAP2B	HGNC	ENSG00000008196				107	0	0	134	17	11.2583
BAI3	0	genome.wustl.edu	37	6	70071176	70071176	+	Silent	SNP	T	T	C			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	6	70071176	70071176	T	C	SNP	BAI3	ENST00000370598	human	ensembl	74_37	+1	known	silent	c.4011	p.H1337	1.000	NULL	pfam_GPCR_2_secretin-like,pfam_DUF3497,pfam_Thrombospondin_1_rpt,pfam_GPS_dom,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_CUB_dom,pfscan_GPS_dom,pfscan_Thrombospondin_1_rpt,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GPCR_2_brain-spec_angio_inhib,prints_GPCR_2_secretin-like	-	no_errors	BAI3	HGNC	ENSG00000135298				122	0	0	121	38	23.8994
DSP	0	genome.wustl.edu	37	6	7583269	7583269	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	6	7583269	7583269	A	G	SNP	DSP	ENST00000379802	human	ensembl	74_37	+1	known	missense	c.5774	p.Q1925R	1.000	NULL	pfam_Plectin_repeat,smart_Spectrin/alpha-actinin,smart_Plectin_repeat	-	no_errors	DSP	HGNC	ENSG00000096696				128	0	0	136	33	19.5266
PCOLCE-AS1	0	genome.wustl.edu	37	7	100200269	100200269	+	RNA	SNP	G	G	A			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	7	100200269	100200269	G	A	SNP	PCOLCE-AS1	ENST00000442166	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	PCOLCE-AS1	HGNC	ENSG00000224729				21	0	0	32	7	17.9487
MOGAT3	0	genome.wustl.edu	37	7	100839530	100839530	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	7	100839530	100839530	C	T	SNP	MOGAT3	ENST00000440203	human	ensembl	74_37	-1	known	missense	c.809	p.R270H	0.017	pfam_DAGAT	pfam_DAGAT	-	no_errors	MOGAT3	HGNC	ENSG00000106384				15	0	0	22	6	21.4286
KMT2E	0	genome.wustl.edu	37	7	104753038	104753038	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	7	104753038	104753038	C	T	SNP	KMT2E	ENST00000257745	human	ensembl	74_37	+1	known	missense	c.4835	p.S1612F	0.999	NULL	pfam_SET_dom,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_SET_dom,pfscan_SET_dom,pfscan_Znf_PHD-finger	-	no_errors	KMT2E	HGNC	ENSG00000005483				187	1	0.531915	199	26	11.5556
FOXP2	0	genome.wustl.edu	37	7	114174676	114174676	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	7	114174676	114174676	T	G	SNP	FOXP2	ENST00000408937	human	ensembl	74_37	+1	known	missense	c.173	p.L58R	1.000	NULL	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXP2	HGNC	ENSG00000128573				240	0	0	170	26	13.2653
AHCYL2	0	genome.wustl.edu	37	7	129066383	129066383	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	7	129066383	129066383	C	T	SNP	AHCYL2	ENST00000325006	human	ensembl	74_37	+1	known	missense	c.1808	p.P603L	1.000	pfam_Adenosylhomocysteinase,tigrfam_Adenosylhomocysteinase	pfam_Adenosylhomocysteinase,pfam_Ado_hCys_hydrolase_NAD-bd,pfam_D-isomer_2_OHA_DH_NAD-bd,tigrfam_Adenosylhomocysteinase	-	no_errors	AHCYL2	HGNC	ENSG00000158467				102	0	0	72	42	36.8421
ACTR3C	0	genome.wustl.edu	37	7	149986639	149986639	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	7	149986639	149986639	A	G	SNP	ACTR3C	ENST00000252071	human	ensembl	74_37	-1	known	missense	c.197	p.I66T	1.000	pfam_Actin-related,smart_Actin-related	pfam_Actin-related,smart_Actin-related	-	no_errors	ACTR3C	HGNC	ENSG00000106526				41	0	0	39	12	23.5294
KMT2C	0	genome.wustl.edu	37	7	151874791	151874791	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	7	151874791	151874791	C	G	SNP	KMT2C	ENST00000355193	human	ensembl	74_37	-1	known	missense	c.7747	p.E2583Q	0.980	NULL	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_box_dom,smart_Znf_PHD,smart_Znf_RING,smart_HMG_box_dom,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_DHHC_palmitoyltrfase,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	KMT2C	HGNC	ENSG00000055609				143	0	0	88	63	41.7219
TMEM196	0	genome.wustl.edu	37	7	19765389	19765389	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	7	19765389	19765389	C	A	SNP	TMEM196	ENST00000405764	human	ensembl	74_37	-1	known	missense	c.207	p.M69I	1.000	NULL	NULL	-	no_errors	TMEM196	HGNC	ENSG00000173452				109	0	0	125	11	8.08824
ADCY1	0	genome.wustl.edu	37	7	45753346	45753346	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	7	45753346	45753346	C	T	SNP	ADCY1	ENST00000297323	human	ensembl	74_37	+1	known	nonsense	c.3112	p.R1038*	1.000	pfam_A/G_cyclase,superfamily_A/G_cyclase,smart_A/G_cyclase	pfam_A/G_cyclase,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY1	HGNC	ENSG00000164742				86	0	0	167	21	11.1702
IGFBP3	0	genome.wustl.edu	37	7	45954522	45954522	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	7	45954522	45954522	T	G	SNP	IGFBP3	ENST00000381083	human	ensembl	74_37	-1	known	missense	c.791	p.K264T	1.000	pfam_Thyroglobulin_1,superfamily_Thyroglobulin_1,smart_Thyroglobulin_1,prints_IGFBP_1-6_chordata,pfscan_Thyroglobulin_1	pfam_Thyroglobulin_1,pfam_IGFBP-like,superfamily_Thyroglobulin_1,superfamily_Growth_fac_rcpt_N_dom,smart_IGFBP-like,smart_Thyroglobulin_1,prints_IGFBP_1-6_chordata,prints_IGFBP-3,pfscan_Thyroglobulin_1	-	no_errors	IGFBP3	HGNC	ENSG00000146674				84	0	0	113	9	7.37705
WIPI2	0	genome.wustl.edu	37	7	5256764	5256764	+	Silent	SNP	G	G	A			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	7	5256764	5256764	G	A	SNP	WIPI2	ENST00000288828	human	ensembl	74_37	+1	known	silent	c.522	p.A174	0.065	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat	-	no_errors	WIPI2	HGNC	ENSG00000157954				109	0	0	178	16	8.24742
GTF2IRD2P1	0	genome.wustl.edu	37	7	72658637	72658637	+	RNA	SNP	C	C	A			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	7	72658637	72658637	C	A	SNP	GTF2IRD2P1	ENST00000425256	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.138	-	-	-	no_errors	GTF2IRD2P1	HGNC	ENSG00000214544				64	0	0	63	186	74.6988
BCL7B	0	genome.wustl.edu	37	7	72954381	72954381	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	7	72954381	72954381	G	A	SNP	BCL7B	ENST00000454871	human	ensembl	74_37	-1	known	missense	c.170	p.T57M	1.000	NULL	pfam_BCL7	-	no_errors	BCL7B	HGNC	ENSG00000106635				33	0	0	38	6	13.6364
PTPN12	0	genome.wustl.edu	37	7	77212905	77212905	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	7	77212905	77212905	C	G	SNP	PTPN12	ENST00000248594	human	ensembl	74_37	+1	known	missense	c.319	p.Q107E	1.000	pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,pirsf_Ptpn_12,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pirsf_Ptpn_12,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPN12	HGNC	ENSG00000127947				143	0	0	88	35	28.4553
ZNF804B	0	genome.wustl.edu	37	7	88965108	88965108	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	7	88965108	88965108	C	T	SNP	ZNF804B	ENST00000333190	human	ensembl	74_37	+1	known	nonsense	c.2812	p.Q938*	0.960	NULL	pfam_Znf_C2H2_jaz	-	no_errors	ZNF804B	HGNC	ENSG00000182348				267	0	0	277	45	13.9752
TRRAP	0	genome.wustl.edu	37	7	98513368	98513368	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	7	98513368	98513368	A	T	SNP	TRRAP	ENST00000359863	human	ensembl	74_37	+1	known	missense	c.2222	p.N741I	1.000	superfamily_ARM-type_fold	pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	TRRAP	HGNC	ENSG00000196367				161	0	0	204	13	5.99078
RIMS2	0	genome.wustl.edu	37	8	105160990	105160990	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	8	105160990	105160990	A	G	SNP	RIMS2	ENST00000436393	human	ensembl	74_37	+1	novel	missense	c.3302	p.K1101R	1.000	NULL	pfam_C2_dom,pfam_PDZ,superfamily_C2_dom,superfamily_PDZ,smart_PDZ,smart_C2_dom,pfscan_C2_dom,pfscan_PDZ	-	no_errors	RIMS2	HGNC	ENSG00000176406				134	1	0.740741	154	24	13.4831
RIMS2	0	genome.wustl.edu	37	8	105263384	105263384	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	8	105263384	105263384	T	A	SNP	RIMS2	ENST00000406091	human	ensembl	74_37	+1	known	missense	c.3824	p.V1275D	1.000	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	pfam_C2_dom,pfam_PDZ,superfamily_C2_dom,superfamily_Znf_FYVE_PHD,superfamily_PDZ,smart_PDZ,smart_C2_dom,pfscan_C2_dom,pfscan_PDZ,pfscan_Znf_FYVE-typ,pfscan_Znf_FYVE-rel	-	no_errors	RIMS2	HGNC	ENSG00000176406				19	0	0	31	8	20.5128
CSMD3	0	genome.wustl.edu	37	8	113933947	113933947	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	8	113933947	113933947	T	G	SNP	CSMD3	ENST00000297405	human	ensembl	74_37	-1	known	missense	c.1542	p.E514D	1.000	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_CUB_dom,pfam_Sushi_SCR_CCP,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_CUB_dom,smart_Sushi_SCR_CCP,pfscan_CUB_dom,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD3	HGNC	ENSG00000164796				147	0	0	162	79	32.7801
TRPS1	0	genome.wustl.edu	37	8	116599678	116599678	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	8	116599678	116599678	T	G	SNP	TRPS1	ENST00000395715	human	ensembl	74_37	-1	known	missense	c.2250	p.K750N	1.000	NULL	pfam_Znf_GATA,smart_Znf_C2H2-like,smart_Znf_GATA,pfscan_Znf_C2H2,pfscan_Znf_GATA,prints_Znf_GATA	-	no_errors	TRPS1	HGNC	ENSG00000104447				369	0	0	375	184	32.9159
OC90	0	genome.wustl.edu	37	8	133048652	133048652	+	Silent	SNP	A	A	G			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	8	133048652	133048652	A	G	SNP	OC90	ENST00000443356	human	ensembl	74_37	-1	known	silent	c.693	p.T231	0.000	NULL	pfam_PLipase_A2_dom,superfamily_PLipase_A2_dom,smart_PLipase_A2_dom,prints_PLipase_A2	-	no_errors	OC90	Uniprot_gn	ENSG00000258417				90	0	0	73	43	37.069
GSR	0	genome.wustl.edu	37	8	30546716	30546716	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	8	30546716	30546716	G	A	SNP	GSR	ENST00000221130	human	ensembl	74_37	-1	known	missense	c.1003	p.R335W	0.994	pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,prints_FAD_pyr_nucl-diS_OxRdtase,tigrfam_Glutathione_Rdtase_euk/bac	pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,pfam_Pyr_nucl-diS_OxRdtase_dimer,pfam_Pyr_OxRdtase_NAD-bd_dom,superfamily_FAD/NAD-linked_Rdtase_dimer,prints_FAD_pyr_nucl-diS_OxRdtase,prints_Hg_reductase,prints_Pyridine_nuc-diS_OxRdtase_2,tigrfam_Glutathione_Rdtase_euk/bac	-	no_errors	GSR	HGNC	ENSG00000104687				77	0	0	35	27	43.5484
UNC5D	0	genome.wustl.edu	37	8	35631916	35631916	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	8	35631916	35631916	C	T	SNP	UNC5D	ENST00000404895	human	ensembl	74_37	+1	known	missense	c.2578	p.R860W	0.994	pfam_Death_domain,superfamily_DEATH-like_dom,smart_Death_domain	pfam_ZU5,pfam_Ig_I-set,pfam_Thrombospondin_1_rpt,pfam_Death_domain,pfam_Immunoglobulin,superfamily_DEATH-like_dom,superfamily_Thrombospondin_1_rpt,smart_Ig_sub,smart_Ig_sub2,smart_Thrombospondin_1_rpt,smart_ZU5,smart_Death_domain,pfscan_Thrombospondin_1_rpt,pfscan_ZU5,pfscan_Ig-like_dom	-	no_errors	UNC5D	HGNC	ENSG00000156687				121	0	0	87	37	29.8387
PXDNL	0	genome.wustl.edu	37	8	52321637	52321637	+	Silent	SNP	G	G	A			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	8	52321637	52321637	G	A	SNP	PXDNL	ENST00000356297	human	ensembl	74_37	-1	known	silent	c.2547	p.H849	0.000	pfam_Haem_peroxidase_animal,superfamily_Haem_peroxidase,pfscan_Haem_peroxidase_animal	pfam_Haem_peroxidase_animal,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_VWF_C,pfam_Leu-rich_rpt,superfamily_Haem_peroxidase,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,smart_VWF_C,prints_Haem_peroxidase_animal_subgr,pfscan_VWF_C,pfscan_Haem_peroxidase_animal,pfscan_Ig-like_dom	-	no_errors	PXDNL	HGNC	ENSG00000147485				32	0	0	49	23	31.9444
MOS	0	genome.wustl.edu	37	8	57026167	57026167	+	Silent	SNP	C	C	T			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	8	57026167	57026167	C	T	SNP	MOS	ENST00000311923	human	ensembl	74_37	-1	known	silent	c.375	p.T125	0.306	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	MOS	HGNC	ENSG00000172680				242	0	0	272	109	28.6089
CYP7B1	0	genome.wustl.edu	37	8	65536991	65536991	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	8	65536991	65536991	T	G	SNP	CYP7B1	ENST00000310193	human	ensembl	74_37	-1	known	missense	c.228	p.Q76H	0.831	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_E_grp-I	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_E_grp-I,prints_Cyt_P450	-	no_errors	CYP7B1	HGNC	ENSG00000172817				217	0	0	269	36	11.8033
CNGB3	0	genome.wustl.edu	37	8	87751922	87751922	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	8	87751922	87751922	T	G	SNP	CNGB3	ENST00000320005	human	ensembl	74_37	-1	known	missense	c.172	p.T58P	0.001	NULL	pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom	-	no_errors	CNGB3	HGNC	ENSG00000170289				152	0	0	187	37	16.5179
CNBD1	0	genome.wustl.edu	37	8	87899806	87899806	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	8	87899806	87899806	T	C	SNP	CNBD1	ENST00000518476	human	ensembl	74_37	+1	known	missense	c.125	p.L42S	1.000	NULL	pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,pfscan_cNMP-bd_dom	-	no_errors	CNBD1	HGNC	ENSG00000176571				8	0	0	13	6	31.5789
MMP16	0	genome.wustl.edu	37	8	89068435	89068435	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	8	89068435	89068435	T	C	SNP	MMP16	ENST00000286614	human	ensembl	74_37	-1	known	missense	c.1294	p.S432G	0.983	pirsf_Pept_M10A_Metazoans,pfam_Hemopexin-like_repeat,superfamily_Hemopexin-like_dom,smart_Hemopexin-like_repeat	pirsf_Pept_M10A_Metazoans,pfam_Hemopexin-like_repeat,pfam_Pept_M10_metallopeptidase,pfam_Pept_M10A_metallopeptidase_C,pfam_Peptidoglycan-bd-like,superfamily_Hemopexin-like_dom,superfamily_Peptidoglycan-bd-like,smart_Peptidase_Metallo,smart_Hemopexin-like_repeat,prints_Pept_M10A	-	no_errors	MMP16	HGNC	ENSG00000156103				140	0	0	224	53	19.1336
TLR4	0	genome.wustl.edu	37	9	120475898	120475898	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	9	120475898	120475898	T	G	SNP	TLR4	ENST00000355622	human	ensembl	74_37	+1	known	missense	c.1492	p.L498V	0.773	pirsf_Toll-like_receptor,pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	pirsf_Toll-like_receptor,pfam_TIR_dom,pfam_Leu-rich_rpt,superfamily_TIR_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_TIR_dom,pfscan_TIR_dom	-	no_errors	TLR4	HGNC	ENSG00000136869				119	0	0	132	43	24.5714
SPTAN1	0	genome.wustl.edu	37	9	131329152	131329152	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	9	131329152	131329152	C	T	SNP	SPTAN1	ENST00000358161	human	ensembl	74_37	+1	known	nonsense	c.133	p.R45*	1.000	pfam_Spectrin_repeat	pfam_Spectrin_repeat,pfam_EF-hand_Ca_insen,pfam_SH3_domain,pfam_EF_hand_dom,pfam_SH3_2,superfamily_SH3_domain,smart_Spectrin/alpha-actinin,smart_SH3_domain,smart_EF_hand_dom,pfscan_EF_hand_dom,pfscan_SH3_domain,prints_Spectrin_alpha_SH3,prints_SH3_domain	-	no_errors	SPTAN1	HGNC	ENSG00000197694				154	0	0	152	63	29.3023
FAM78A	0	genome.wustl.edu	37	9	134136516	134136516	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	9	134136516	134136516	T	A	SNP	FAM78A	ENST00000372271	human	ensembl	74_37	-1	known	missense	c.545	p.N182I	1.000	NULL	NULL	-	no_errors	FAM78A	HGNC	ENSG00000126882				185	0	0	165	35	17.5
KCNV2	0	genome.wustl.edu	37	9	2718193	2718193	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	9	2718193	2718193	G	A	SNP	KCNV2	ENST00000382082	human	ensembl	74_37	+1	known	missense	c.454	p.D152N	1.000	pfam_T1-type_BTB,superfamily_BTB/POZ_fold,prints_K_chnl,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv3	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,prints_K_chnl,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv3	-	no_errors	KCNV2	HGNC	ENSG00000168263				33	0	0	14	12	46.1538
PTPRD	0	genome.wustl.edu	37	9	8376048	8376048	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	9	8376048	8376048	T	G	SNP	PTPRD	ENST00000356435	human	ensembl	74_37	-1	known	missense	c.4549	p.T1517P	1.000	pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Fibronectin_type3,pfam_Ig_I-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like_dom,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRD	HGNC	ENSG00000153707				95	0	0	30	28	48.2759
SPATA31D5P	0	genome.wustl.edu	37	9	84531877	84531877	+	RNA	SNP	C	C	A			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	9	84531877	84531877	C	A	SNP	SPATA31D5P	ENST00000527857	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.040	-	-	-	no_errors	SPATA31D5P	HGNC	ENSG00000240632				48	0	0	44	21	32.3077
SPATA31D5P	0	genome.wustl.edu	37	9	84531878	84531878	+	RNA	SNP	T	T	A			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	9	84531878	84531878	T	A	SNP	SPATA31D5P	ENST00000527857	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.040	-	-	-	no_errors	SPATA31D5P	HGNC	ENSG00000240632				48	0	0	45	21	31.8182
KIF27	0	genome.wustl.edu	37	9	86506355	86506355	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	9	86506355	86506355	A	C	SNP	KIF27	ENST00000297814	human	ensembl	74_37	-1	known	missense	c.1664	p.L555R	1.000	NULL	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF27	HGNC	ENSG00000165115				94	0	0	72	31	30.0971
NXNL2	0	genome.wustl.edu	37	9	91150520	91150520	+	Silent	SNP	C	C	T			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	9	91150520	91150520	C	T	SNP	NXNL2	ENST00000375854	human	ensembl	74_37	+1	known	silent	c.171	p.A57	0.961	superfamily_Thioredoxin-like_fold	superfamily_Thioredoxin-like_fold	-	no_errors	NXNL2	HGNC	ENSG00000130045				49	0	0	29	17	36.9565
SLC6A14	0	genome.wustl.edu	37	X	115586617	115586617	+	Silent	SNP	G	G	A			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	X	115586617	115586617	G	A	SNP	SLC6A14	ENST00000371900	human	ensembl	74_37	+1	known	silent	c.1599	p.T533	0.019	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport	-	no_errors	SLC6A14	HGNC	ENSG00000087916				72	0	0	96	30	23.8095
ATP1B4	0	genome.wustl.edu	37	X	119505008	119505008	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	X	119505008	119505008	G	A	SNP	ATP1B4	ENST00000218008	human	ensembl	74_37	+1	known	missense	c.505	p.V169I	1.000	pfam_Na/K_ATPase_sub_beta,tigrfam_Na/K_ATPase_sub_beta	pfam_Na/K_ATPase_sub_beta,tigrfam_Na/K_ATPase_sub_beta	-	no_errors	ATP1B4	HGNC	ENSG00000101892				86	0	0	85	17	16.6667
CNKSR2	0	genome.wustl.edu	37	X	21581553	21581553	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	X	21581553	21581553	G	A	SNP	CNKSR2	ENST00000379510	human	ensembl	74_37	+1	known	missense	c.1591	p.E531K	1.000	NULL	pfam_CNKSR2,pfam_CRIC_domain_Chordata,pfam_SAM_type1,pfam_Pleckstrin_homology,pfam_SAM_2,pfam_PDZ,superfamily_SAM/pointed,superfamily_PDZ,smart_SAM,smart_PDZ,smart_Pleckstrin_homology,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_SAM	-	no_errors	CNKSR2	HGNC	ENSG00000149970				87	0	0	53	32	37.6471
DMD	0	genome.wustl.edu	37	X	32486747	32486747	+	Silent	SNP	C	C	T			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	X	32486747	32486747	C	T	SNP	DMD	ENST00000357033	human	ensembl	74_37	-1	known	silent	c.3030	p.A1010	0.097	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin,pirsf_Dystrophin/utrophin	pfam_Spectrin_repeat,pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_CH-domain,pfam_Znf_ZZ,pfam_WW_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_WW_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_WW_dom,smart_Znf_ZZ,pirsf_Dystrophin/utrophin,pfscan_CH-domain,pfscan_WW_dom,pfscan_Znf_ZZ	-	no_errors	DMD	HGNC	ENSG00000198947				64	0	0	50	10	16.6667
KLHL4	0	genome.wustl.edu	37	X	86887303	86887303	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	X	86887303	86887303	T	G	SNP	KLHL4	ENST00000373114	human	ensembl	74_37	+1	known	missense	c.1418	p.V473G	1.000	pfam_Kelch_1,pfam_Kelch_2,smart_Kelch_1	pfam_Kelch_1,pfam_BACK,pfam_BTB_POZ,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pfscan_BTB/POZ-like	-	no_errors	KLHL4	HGNC	ENSG00000102271				43	0	0	38	31	44.9275
GPR143	0	genome.wustl.edu	37	X	9693809	9693809	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	X	9693809	9693809	G	A	SNP	GPR143	ENST00000380929	human	ensembl	74_37	-1	known	missense	c.1252	p.L418F	0.000	pfam_Ocular_alb1	pfam_Ocular_alb1,pfam_GPCR_2_secretin-like,prints_Ocular_alb1	-	no_errors	GPR143	HGNC	ENSG00000101850				33	0	0	35	5	12.5
SPTA1	0	genome.wustl.edu	37	1	158590118	158590118	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	1	158590118	158590118	C	-	DEL	SPTA1	ENST00000368147	human	ensembl	74_37	-1	known	frame_shift_del	c.6259	p.D2087fs	0.998	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_EF-hand_Ca_insen,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_Spectrin/alpha-actinin,smart_SH3_domain,pfscan_EF_hand_dom,pfscan_SH3_domain,prints_Spectrin_alpha_SH3	-	no_errors	SPTA1	HGNC	ENSG00000163554				93	0	0	125	13	9.42029
RPS10P7	0	genome.wustl.edu	37	1	201489719	201489719	+	RNA	DEL	A	A	-			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	1	201489719	201489719	A	-	DEL	RPS10P7	ENST00000441932	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.056	-	-	-	no_errors	RPS10P7	HGNC	ENSG00000223396				12	0	0	12	2	14.2857
TRIM51	0	genome.wustl.edu	37	11	55653610	55653610	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	11	55653610	55653610	A	-	DEL	TRIM51	ENST00000449290	human	ensembl	74_37	+1	known	frame_shift_del	c.423	p.M144fs	0.001	NULL	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl_sf,smart_Znf_RING,smart_Znf_B-box,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	TRIM51	HGNC	ENSG00000124900				65	0	0	89	12	11.8812
TNFAIP2	0	genome.wustl.edu	37	14	103592889	103592891	+	In_Frame_Del	DEL	AGA	AGA	-			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	AGA	AGA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	14	103592889	103592891	AGA	-	DEL	TNFAIP2	ENST00000333007	human	ensembl	74_37	+1	known	in_frame_del	c.95_97	p.K36in_frame_del	0.988:0.992:0.995	NULL	pfam_Sec6	-	no_errors	TNFAIP2	HGNC	ENSG00000185215				10	0	0	8	2	20
LILRA1	0	genome.wustl.edu	37	19	55112391	55112392	+	RNA	INS	-	-	G			TCGA-BR-4369-01A-01D-1158-08	TCGA-BR-4369-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	45e9bc01-ad92-4a4c-bb2d-c54999962c8d	124ae002-8b64-4eac-baa6-ece7e7482b43	19	55112391	55112392	-	G	INS	LILRA1	ENST00000473156	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	LILRA1	HGNC	ENSG00000104974				41	0	0	63	11	14.8649
