Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
AGL	0	genome.wustl.edu	37	1	100382219	100382219	+	Silent	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	1	100382219	100382219	G	A	SNP	AGL	ENST00000294724	human	ensembl	74_37	+1	known	silent	c.4413	p.P1471	0.686	pfam_AGL/Gdb1,superfamily_6-hairpin_glycosidase-like,tigrfam_Glycogen_debranch_met	pfam_AGL/Gdb1,superfamily_6-hairpin_glycosidase-like,superfamily_Glycoside_hydrolase_SF,tigrfam_Glycogen_debranch_met	-	no_errors	AGL	HGNC	ENSG00000162688				57	0	0	46	38	45.2381
UBE4B	0	genome.wustl.edu	37	1	10211398	10211398	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	1	10211398	10211398	C	T	SNP	UBE4B	ENST00000343090	human	ensembl	74_37	+1	known	missense	c.2705	p.A902V	1.000	pfam_Ub_conjug_fac_E4_core	pfam_Ub_conjug_fac_E4_core,pfam_Ubox_domain,smart_Ubox_domain	-	no_errors	UBE4B	HGNC	ENSG00000130939				133	0	0	156	36	18.75
AMY2B	0	genome.wustl.edu	37	1	104112907	104112907	+	RNA	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	1	104112907	104112907	C	T	SNP	AMY2B	ENST00000491397	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	AMY2B	HGNC	ENSG00000240038				47	0	0	59	13	18.0556
VAV3	0	genome.wustl.edu	37	1	108116784	108116784	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	1	108116784	108116784	C	T	SNP	VAV3	ENST00000370056	human	ensembl	74_37	-1	known	missense	c.2387	p.R796Q	1.000	pfam_SH3_domain,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain,prints_SH3_domain	pfam_DH-domain,pfam_SH3_2,pfam_CAMSAP_CH,pfam_SH3_domain,pfam_SH2,pfam_CH-domain,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pleckstrin_homology,superfamily_DH-domain,superfamily_CH-domain,superfamily_SH3_domain,smart_CH-domain,smart_DH-domain,smart_Pleckstrin_homology,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_SH3_domain,smart_SH2,pfscan_CH-domain,pfscan_Pleckstrin_homology,pfscan_SH2,pfscan_SH3_domain,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_DH-domain,prints_SH2,prints_SH3_domain,prints_SM22_calponin	-	no_errors	VAV3	HGNC	ENSG00000134215				155	0	0	169	47	21.7593
GNAI3	0	genome.wustl.edu	37	1	110128869	110128869	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	1	110128869	110128869	C	T	SNP	GNAI3	ENST00000369851	human	ensembl	74_37	+1	known	nonsense	c.622	p.R208*	1.000	pfam_Gprotein_alpha_su,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,smart_Gprotein_alpha_su,prints_Gprotein_alpha_su	pfam_Gprotein_alpha_su,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,superfamily_GproteinA_insert,smart_Gprotein_alpha_su,prints_Gprotein_alpha_su,prints_Gprotein_alpha_I,prints_Fungi_Gprotein_alpha	-	no_errors	GNAI3	HGNC	ENSG00000065135				229	0	0	231	68	22.7425
GSTM2	0	genome.wustl.edu	37	1	110251177	110251177	+	Silent	SNP	T	T	C			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	1	110251177	110251177	T	C	SNP	GSTM2	ENST00000369831	human	ensembl	74_37	+1	putative	silent	c.642	p.C214	0.399	NULL	pfam_Glutathione_S-Trfase_N,pfam_GST_C,superfamily_Glutathione-S-Trfase_C-like,superfamily_Thioredoxin-like_fold,prints_GST_mu	-	no_errors	GSTM2	HGNC	ENSG00000213366				13	0	0	11	6	35.2941
MTOR	0	genome.wustl.edu	37	1	11184640	11184640	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	1	11184640	11184640	G	A	SNP	MTOR	ENST00000361445	human	ensembl	74_37	-1	known	missense	c.6577	p.R2193C	0.995	pfam_PI3/4_kinase_cat_dom,superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,pfam_DUF3385_TOR,pfam_Rapamycin-bd_dom,pfam_FATC,superfamily_ARM-type_fold,superfamily_Kinase-like_dom,superfamily_Rapamycin-bd_dom,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	MTOR	HGNC	ENSG00000198793				71	0	0	94	19	16.8142
MTOR	0	genome.wustl.edu	37	1	11204707	11204707	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	1	11204707	11204707	G	A	SNP	MTOR	ENST00000361445	human	ensembl	74_37	-1	known	nonsense	c.4870	p.Q1624*	1.000	pfam_PIK-rel_kinase_FAT,pfscan_PIK_FAT	pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,pfam_DUF3385_TOR,pfam_Rapamycin-bd_dom,pfam_FATC,superfamily_ARM-type_fold,superfamily_Kinase-like_dom,superfamily_Rapamycin-bd_dom,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	MTOR	HGNC	ENSG00000198793				67	0	0	82	16	16.3265
MOV10	0	genome.wustl.edu	37	1	113231495	113231495	+	RNA	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	1	113231495	113231495	G	A	SNP	MOV10	ENST00000496577	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	MOV10	HGNC	ENSG00000155363				37	0	0	38	11	22.449
LRIG2	0	genome.wustl.edu	37	1	113657401	113657401	+	Silent	SNP	T	T	C			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	1	113657401	113657401	T	C	SNP	LRIG2	ENST00000361127	human	ensembl	74_37	+1	known	silent	c.2433	p.I811	0.958	NULL	pfam_Ig_I-set,pfam_Leu-rich_rpt,pfam_Immunoglobulin,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	LRIG2	HGNC	ENSG00000198799				169	0	0	171	48	21.9178
SYCP1	0	genome.wustl.edu	37	1	115418692	115418692	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	1	115418692	115418692	A	C	SNP	SYCP1	ENST00000369518	human	ensembl	74_37	+1	known	missense	c.660	p.K220N	1.000	pfam_SCP-1	pfam_SCP-1	-	no_errors	SYCP1	HGNC	ENSG00000198765				79	0	0	93	21	18.4211
SYCP1	0	genome.wustl.edu	37	1	115537372	115537372	+	Silent	SNP	A	A	G			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	1	115537372	115537372	A	G	SNP	SYCP1	ENST00000369518	human	ensembl	74_37	+1	known	silent	c.2757	p.P919	0.655	NULL	pfam_SCP-1	-	no_errors	SYCP1	HGNC	ENSG00000198765				72	0	0	77	22	22.2222
MAB21L3	0	genome.wustl.edu	37	1	116663675	116663675	+	Silent	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	1	116663675	116663675	G	A	SNP	MAB21L3	ENST00000369500	human	ensembl	74_37	+1	known	silent	c.171	p.T57	0.000	NULL	pfam_Mab-21_dom	-	no_errors	MAB21L3	HGNC	ENSG00000173212				253	0	0	244	53	17.8451
UBE2J2	0	genome.wustl.edu	37	1	1190726	1190726	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	1	1190726	1190726	C	T	SNP	UBE2J2	ENST00000400930	human	ensembl	74_37	-1	known	missense	c.685	p.V229I	0.603	NULL	pfam_UBQ-conjugat_E2,superfamily_UBQ-conjugating_enzyme/RWD,pfscan_UBQ-conjugat_E2	-	no_errors	UBE2J2	HGNC	ENSG00000160087				146	0	0	141	36	20.339
NOTCH2	0	genome.wustl.edu	37	1	120458868	120458868	+	Silent	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	1	120458868	120458868	C	T	SNP	NOTCH2	ENST00000256646	human	ensembl	74_37	-1	known	silent	c.6477	p.T2159	0.003	pirsf_Notch	pirsf_Notch,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,pfam_Ankyrin_rpt,pfam_Notch_NOD_dom,pfam_DUF3454_notch,pfam_Notch_NODP_dom,pfam_EGF_extracell,superfamily_Ankyrin_rpt-contain_dom,superfamily_Notch_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Notch_dom,smart_Ankyrin_rpt,prints_Notch_2,prints_Notch_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_EG-like_dom,pfscan_Notch_dom	-	no_errors	NOTCH2	HGNC	ENSG00000134250				98	0	0	121	21	14.7887
ACAP3	0	genome.wustl.edu	37	1	1233229	1233229	+	Silent	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	1	1233229	1233229	G	A	SNP	ACAP3	ENST00000353662	human	ensembl	74_37	-1	known	silent	c.975	p.R325	0.768	NULL	pfam_ArfGAP,pfam_Ankyrin_rpt,pfam_Pleckstrin_homology,superfamily_Ankyrin_rpt-contain_dom,smart_Pleckstrin_homology,smart_ArfGAP,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Pleckstrin_homology,pfscan_ArfGAP,prints_ArfGAP	-	no_errors	ACAP3	HGNC	ENSG00000131584				80	0	0	90	27	23.0769
CPSF3L	0	genome.wustl.edu	37	1	1248444	1248444	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	1	1248444	1248444	G	A	SNP	CPSF3L	ENST00000540437	human	ensembl	74_37	-1	known	missense	c.1120	p.R374W	1.000	NULL	pfam_Beta_Casp,pfam_Beta-lactamas-like,pfam_RMMBL,smart_Beta-lactamas-like	-	no_errors	CPSF3L	HGNC	ENSG00000127054				34	0	0	43	20	31.746
DVL1	0	genome.wustl.edu	37	1	1275151	1275151	+	Silent	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	1	1275151	1275151	G	A	SNP	DVL1	ENST00000378888	human	ensembl	74_37	-1	known	silent	c.951	p.A317	0.738	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_Dishevelled_C-dom,pfam_DIX,pfam_Dishevelled_protein_dom,pfam_PDZ,pfam_DEP_dom,superfamily_PDZ,smart_DIX,smart_PDZ,smart_DEP_dom,pfscan_DEP_dom,pfscan_DIX,pfscan_PDZ,prints_Dishevelled_fam	-	no_errors	DVL1	HGNC	ENSG00000107404				69	0	0	99	13	11.6071
PDE4DIP	0	genome.wustl.edu	37	1	145075923	145075923	+	RNA	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	1	145075923	145075923	C	T	SNP	PDE4DIP	ENST00000528552	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	PDE4DIP	HGNC	ENSG00000178104				35	0	0	53	11	17.1875
ITGA10	0	genome.wustl.edu	37	1	145535840	145535840	+	Silent	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	1	145535840	145535840	G	A	SNP	ITGA10	ENST00000369304	human	ensembl	74_37	+1	known	silent	c.2028	p.L676	0.021	pfam_Integrin_alpha-2	pfam_Integrin_alpha-2,pfam_VWF_A,pfam_FG-GAP,smart_Int_alpha_beta-p,smart_VWF_A,pfscan_VWF_A,prints_Integrin_alpha	-	no_errors	ITGA10	HGNC	ENSG00000143127				165	0	0	201	19	8.63636
CHD1L	0	genome.wustl.edu	37	1	146766109	146766109	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	1	146766109	146766109	G	A	SNP	CHD1L	ENST00000369258	human	ensembl	74_37	+1	known	missense	c.2525	p.R842H	1.000	pfscan_Macro_dom	pfam_SNF2_N,pfam_Helicase_C,pfam_HDA_complex_subunit-2/3,pfam_Helicase/UvrB_dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Macro_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	CHD1L	HGNC	ENSG00000131778				257	1	0.387597	217	65	23.0496
PLEKHO1	0	genome.wustl.edu	37	1	150131356	150131356	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	1	150131356	150131356	C	T	SNP	PLEKHO1	ENST00000025469	human	ensembl	74_37	+1	known	missense	c.766	p.R256W	0.004	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	PLEKHO1	HGNC	ENSG00000023902				93	0	0	125	29	18.8312
FLG	0	genome.wustl.edu	37	1	152275618	152275618	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	1	152275618	152275618	G	T	SNP	FLG	ENST00000368799	human	ensembl	74_37	-1	known	missense	c.11744	p.S3915Y	0.000	NULL	pfam_Filaggrin,pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom,prints_Filaggrin	-	no_errors	FLG	HGNC	ENSG00000143631				124	0	0	143	38	20.9945
FLG	0	genome.wustl.edu	37	1	152277049	152277049	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	1	152277049	152277049	G	A	SNP	FLG	ENST00000368799	human	ensembl	74_37	-1	known	missense	c.10313	p.P3438L	0.000	NULL	pfam_Filaggrin,pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom,prints_Filaggrin	-	no_errors	FLG	HGNC	ENSG00000143631				646	1	0.15456	650	164	20.1474
FLG	0	genome.wustl.edu	37	1	152277533	152277533	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	1	152277533	152277533	G	A	SNP	FLG	ENST00000368799	human	ensembl	74_37	-1	known	missense	c.9829	p.R3277C	0.000	NULL	pfam_Filaggrin,pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom,prints_Filaggrin	-	no_errors	FLG	HGNC	ENSG00000143631				736	3	0.405954	827	165	16.6331
LCE1E	0	genome.wustl.edu	37	1	152759797	152759797	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	1	152759797	152759797	C	T	SNP	LCE1E	ENST00000368770	human	ensembl	74_37	+1	known	nonsense	c.22	p.Q8*	1.000	NULL	NULL	-	no_errors	LCE1E	HGNC	ENSG00000186226				336	0	0	376	81	17.7243
INTS3	0	genome.wustl.edu	37	1	153744815	153744815	+	Splice_Site	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	1	153744815	153744815	G	A	SNP	INTS3	ENST00000318967	human	ensembl	74_37	+1	known	splice_site	c.2721-1	e27-1	1.000	-	-	-	no_errors	INTS3	HGNC	ENSG00000143624				119	0	0	137	37	21.2644
MSTO1	0	genome.wustl.edu	37	1	155582612	155582612	+	RNA	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	1	155582612	155582612	C	T	SNP	MSTO1	ENST00000466815	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	MSTO1	HGNC	ENSG00000125459				89	0	0	82	18	18
NTRK1	0	genome.wustl.edu	37	1	156843499	156843499	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	1	156843499	156843499	C	T	SNP	NTRK1	ENST00000524377	human	ensembl	74_37	+1	known	missense	c.925	p.P309S	1.000	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Cys-rich_flank_reg_C,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_Tyr_kinase_neurotrophic_rcpt_1,prints_Tyr_kinase_NGF_rcpt	-	no_errors	NTRK1	HGNC	ENSG00000198400				19	0	0	27	7	20.5882
SPTA1	0	genome.wustl.edu	37	1	158622284	158622284	+	Silent	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	1	158622284	158622284	C	T	SNP	SPTA1	ENST00000368147	human	ensembl	74_37	-1	known	silent	c.3348	p.L1116	1.000	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_EF-hand_Ca_insen,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_Spectrin/alpha-actinin,smart_SH3_domain,pfscan_EF_hand_dom,pfscan_SH3_domain,prints_Spectrin_alpha_SH3	-	no_errors	SPTA1	HGNC	ENSG00000163554				197	0	0	201	45	18.2927
OR6K3	0	genome.wustl.edu	37	1	158687412	158687412	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	1	158687412	158687412	G	T	SNP	OR6K3	ENST00000368146	human	ensembl	74_37	-1	known	missense	c.542	p.T181K	0.017	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR6K3	HGNC	ENSG00000203757				134	0	0	140	37	20.904
ARHGAP30	0	genome.wustl.edu	37	1	161023081	161023081	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	1	161023081	161023081	C	T	SNP	ARHGAP30	ENST00000368013	human	ensembl	74_37	-1	known	missense	c.631	p.V211M	0.999	superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP30	HGNC	ENSG00000186517				81	0	0	86	20	18.8679
CDK11A	0	genome.wustl.edu	37	1	1636055	1636055	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	1	1636055	1636055	C	T	SNP	CDK11A	ENST00000404249	human	ensembl	74_37	-1	known	missense	c.1498	p.V500M	0.999	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	CDK11A	HGNC	ENSG00000008128				19	0	0	27	6	18.1818
MIR199A2	0	genome.wustl.edu	37	1	172113759	172113759	+	RNA	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	1	172113759	172113759	C	T	SNP	MIR199A2	ENST00000385289	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	MIR199A2	HGNC	ENSG00000208024				40	0	0	52	18	25.7143
SLC9C2	0	genome.wustl.edu	37	1	173545816	173545816	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	1	173545816	173545816	C	T	SNP	SLC9C2	ENST00000367714	human	ensembl	74_37	-1	known	missense	c.886	p.E296K	0.112	pfam_Cation/H_exchanger	pfam_Cation/H_exchanger,pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,pfscan_cNMP-bd_dom	-	no_errors	SLC9C2	HGNC	ENSG00000162753				51	0	0	53	22	29.3333
PAPPA2	0	genome.wustl.edu	37	1	176675551	176675551	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	1	176675551	176675551	A	G	SNP	PAPPA2	ENST00000367662	human	ensembl	74_37	+1	known	missense	c.3422	p.K1141R	0.013	tigrfam_Myxo_disulph_rpt	pfam_Notch_dom,pfam_Sushi_SCR_CCP,pfam_Peptidase_M43,superfamily_ConA-like_lec_gl_sf,superfamily_Sushi_SCR_CCP,superfamily_Fibronectin_type3,superfamily_Notch_dom,smart_LamG-like,smart_Notch_dom,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP,tigrfam_Myxo_disulph_rpt	-	no_errors	PAPPA2	HGNC	ENSG00000116183				87	0	0	82	21	20.3883
QSOX1	0	genome.wustl.edu	37	1	180155212	180155212	+	Silent	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	1	180155212	180155212	G	A	SNP	QSOX1	ENST00000367602	human	ensembl	74_37	+1	known	silent	c.912	p.L304	1.000	NULL	pfam_ERV/ALR_sulphydryl_oxidase,pfam_Thioredoxin_domain,superfamily_ERV/ALR_sulphydryl_oxidase,superfamily_Thioredoxin-like_fold	-	no_errors	QSOX1	HGNC	ENSG00000116260				110	0	0	111	42	27.451
CACNA1E	0	genome.wustl.edu	37	1	181702089	181702089	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	1	181702089	181702089	G	A	SNP	CACNA1E	ENST00000367573	human	ensembl	74_37	+1	known	missense	c.2867	p.G956E	0.779	NULL	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,pfscan_EF_hand_dom,prints_VDCCAlpha1,prints_VDCC_R_a1su	-	no_errors	CACNA1E	HGNC	ENSG00000198216				111	0	0	109	23	17.4242
ZNF648	0	genome.wustl.edu	37	1	182026671	182026671	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	1	182026671	182026671	C	T	SNP	ZNF648	ENST00000339948	human	ensembl	74_37	-1	novel	missense	c.475	p.A159T	0.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF648	HGNC	ENSG00000179930				93	0	0	94	22	18.9655
LAMC1	0	genome.wustl.edu	37	1	183077451	183077451	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	1	183077451	183077451	G	A	SNP	LAMC1	ENST00000258341	human	ensembl	74_37	+1	known	missense	c.764	p.R255H	1.000	pfam_Laminin_N,smart_Laminin_N,pfscan_Laminin_N	pfam_Laminin_N,pfam_EGF_laminin,pfam_Laminin_B_type_IV,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,smart_Laminin_B_subgr,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_N	-	no_errors	LAMC1	HGNC	ENSG00000135862				191	1	0.520833	207	43	17.2
LAMC1	0	genome.wustl.edu	37	1	183083684	183083684	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	1	183083684	183083684	G	A	SNP	LAMC1	ENST00000258341	human	ensembl	74_37	+1	known	missense	c.1040	p.R347Q	0.981	pfam_EGF_laminin,smart_EG-like_dom,smart_EGF_laminin	pfam_Laminin_N,pfam_EGF_laminin,pfam_Laminin_B_type_IV,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,smart_Laminin_B_subgr,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_N	-	no_errors	LAMC1	HGNC	ENSG00000135862				393	1	0.253807	410	70	14.5833
FAM129A	0	genome.wustl.edu	37	1	184863256	184863256	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	1	184863256	184863256	C	T	SNP	FAM129A	ENST00000367511	human	ensembl	74_37	-1	known	missense	c.271	p.V91I	0.054	NULL	NULL	-	no_errors	FAM129A	HGNC	ENSG00000135842				171	0	0	138	37	21.1429
TPR	0	genome.wustl.edu	37	1	186296653	186296653	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	1	186296653	186296653	A	G	SNP	TPR	ENST00000367478	human	ensembl	74_37	-1	known	missense	c.5828	p.V1943A	1.000	NULL	pfam_TPR_MLP1_2,superfamily_Prefoldin,superfamily_tRNA-bd_arm	-	no_errors	TPR	HGNC	ENSG00000047410				26	0	0	37	17	31.4815
PDC	0	genome.wustl.edu	37	1	186413572	186413572	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	1	186413572	186413572	G	A	SNP	PDC	ENST00000340129	human	ensembl	74_37	-1	known	missense	c.280	p.R94C	1.000	pfam_Phosducin_thioredoxin-like_dom,superfamily_Thioredoxin-like_fold,prints_Phosducin	pfam_Phosducin_thioredoxin-like_dom,superfamily_Thioredoxin-like_fold,prints_Phosducin	-	no_errors	PDC	HGNC	ENSG00000116703				176	0	0	201	51	20.2381
CFHR5	0	genome.wustl.edu	37	1	196971705	196971705	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	1	196971705	196971705	C	T	SNP	CFHR5	ENST00000367414	human	ensembl	74_37	+1	known	missense	c.1313	p.A438V	0.027	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	CFHR5	HGNC	ENSG00000134389				80	0	0	94	31	24.8
CRB1	0	genome.wustl.edu	37	1	197404029	197404029	+	Silent	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	1	197404029	197404029	G	A	SNP	CRB1	ENST00000367400	human	ensembl	74_37	+1	known	silent	c.3036	p.L1012	0.691	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,pfscan_Laminin_G	pfam_EG-like_dom,pfam_Laminin_G,pfam_EGF_extracell,pfam_EGF-like_Ca-bd_dom,superfamily_ConA-like_lec_gl_sf,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	CRB1	HGNC	ENSG00000134376				119	0	0	161	25	13.4409
LAD1	0	genome.wustl.edu	37	1	201352206	201352206	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	1	201352206	201352206	C	T	SNP	LAD1	ENST00000367313	human	ensembl	74_37	-1	known	missense	c.1424	p.R475Q	0.002	pirsf_Ladinin_1	pirsf_Ladinin_1	-	no_errors	LAD1	HGNC	ENSG00000159166				262	0	0	282	46	14.0244
PPP1R12B	0	genome.wustl.edu	37	1	202385958	202385958	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	1	202385958	202385958	A	T	SNP	PPP1R12B	ENST00000336894	human	ensembl	74_37	+1	known	missense	c.335	p.E112V	1.000	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pirsf_Pase-1_reg_su_12A/B/C_euk,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pirsf_Pase-1_reg_su_12A/B/C_euk,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	PPP1R12B	HGNC	ENSG00000077157				154	0	0	195	47	19.4215
TMCC2	0	genome.wustl.edu	37	1	205238587	205238587	+	Silent	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	1	205238587	205238587	C	T	SNP	TMCC2	ENST00000358024	human	ensembl	74_37	+1	known	silent	c.1257	p.T419	0.002	pfam_Predicted_TM_coiled-coil_2	pfam_Predicted_TM_coiled-coil_2,superfamily_t-SNARE	-	no_errors	TMCC2	HGNC	ENSG00000133069				80	0	0	121	31	20.3947
MAPKAPK2	0	genome.wustl.edu	37	1	206905309	206905309	+	RNA	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	1	206905309	206905309	G	A	SNP	MAPKAPK2	ENST00000479009	human	ensembl	74_37	+1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	MAPKAPK2	HGNC	ENSG00000162889				192	0	0	183	57	23.75
PIGR	0	genome.wustl.edu	37	1	207105105	207105105	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	1	207105105	207105105	G	A	SNP	PIGR	ENST00000356495	human	ensembl	74_37	-1	known	missense	c.2051	p.S684L	0.997	NULL	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	-	no_errors	PIGR	HGNC	ENSG00000162896				162	0	0	182	41	18.3857
KCNH1	0	genome.wustl.edu	37	1	210970965	210970965	+	Silent	SNP	C	C	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	1	210970965	210970965	C	A	SNP	KCNH1	ENST00000271751	human	ensembl	74_37	-1	known	silent	c.1800	p.V600	0.994	pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,prints_K_chnl_volt-dep_ERG,pfscan_cNMP-bd_dom	pfam_Ion_trans_dom,pfam_cNMP-bd_dom,pfam_2pore_dom_K_chnl_dom,pfam_PAS_fold,superfamily_cNMP-bd-like,superfamily_PAS,smart_PAC,smart_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG,prints_K_chnl_volt-dep_EAG/ELK/ERG,prints_K_chnl_volt-dep_ERG,pfscan_cNMP-bd_dom,pfscan_PAS,pfscan_PAS-assoc_C,tigrfam_PAS	-	no_errors	KCNH1	HGNC	ENSG00000143473				110	0	0	135	28	17.1779
FAM71A	0	genome.wustl.edu	37	1	212798363	212798363	+	Silent	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	1	212798363	212798363	C	T	SNP	FAM71A	ENST00000294829	human	ensembl	74_37	+1	known	silent	c.144	p.S48	0.995	NULL	pfam_DUF3699	-	no_errors	FAM71A	HGNC	ENSG00000162771				143	1	0.694444	166	32	16.1616
RPS6KC1	0	genome.wustl.edu	37	1	213302993	213302993	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	1	213302993	213302993	C	T	SNP	RPS6KC1	ENST00000366960	human	ensembl	74_37	+1	known	missense	c.596	p.S199L	0.536	NULL	pfam_Prot_kinase_dom,pfam_MIT,pfam_Phox,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Phox,smart_Phox,smart_MIT,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Phox,pfscan_Prot_kinase_dom	-	no_errors	RPS6KC1	HGNC	ENSG00000136643				125	0	0	141	32	18.4971
PTPN14	0	genome.wustl.edu	37	1	214557590	214557590	+	Silent	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	1	214557590	214557590	C	T	SNP	PTPN14	ENST00000366956	human	ensembl	74_37	-1	known	silent	c.1608	p.T536	0.914	pirsf_Tyr_Pase_non-rcpt_typ-14/21	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_FERM_central,pfam_FERM_N,pfam_FERM_PH-like_C,pfam_Dual-sp_phosphatase_cat-dom,superfamily_FERM_central,smart_Band_41_domain,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pirsf_Tyr_Pase_non-rcpt_typ-14/21,pfscan_FERM_domain,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt,prints_Band_41_fam	-	no_errors	PTPN14	HGNC	ENSG00000152104				150	0	0	189	49	20.5882
CENPF	0	genome.wustl.edu	37	1	214815832	214815832	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	1	214815832	214815832	T	C	SNP	CENPF	ENST00000366955	human	ensembl	74_37	+1	known	missense	c.4151	p.L1384S	0.782	NULL	pfam_Centromere_CenpF_N,pfam_Centromere_CenpF_leu-rich_rpt,pfam_CenpF/LEK1_Rb-prot-bd	-	no_errors	CENPF	HGNC	ENSG00000117724				62	0	0	99	22	18.1818
RAP1GAP	0	genome.wustl.edu	37	1	21937954	21937954	+	Silent	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	1	21937954	21937954	G	A	SNP	RAP1GAP	ENST00000290101	human	ensembl	74_37	-1	known	silent	c.1026	p.D342	0.996	pfam_Rap_GAP_dom,pfscan_Rap_GAP_dom	pfam_Rap_GAP_dom,pfam_GoLoco_motif,smart_GoLoco_motif,pfscan_GoLoco_motif,pfscan_Rap_GAP_dom	-	no_errors	RAP1GAP	HGNC	ENSG00000076864				26	0	0	33	7	17.5
MIA3	0	genome.wustl.edu	37	1	222833602	222833602	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	1	222833602	222833602	G	A	SNP	MIA3	ENST00000344441	human	ensembl	74_37	+1	known	missense	c.5059	p.V1687M	0.001	NULL	pfam_SH3_2,superfamily_SH3_domain	-	no_errors	MIA3	HGNC	ENSG00000154305				81	0	0	95	21	18.1034
ADCK3	0	genome.wustl.edu	37	1	227174287	227174287	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	1	227174287	227174287	G	A	SNP	ADCK3	ENST00000366777	human	ensembl	74_37	+1	known	missense	c.1793	p.R598H	1.000	NULL	pfam_UbiB_dom,superfamily_Kinase-like_dom	-	no_errors	ADCK3	HGNC	ENSG00000163050				160	0	0	202	40	16.5289
ARF1	0	genome.wustl.edu	37	1	228285303	228285303	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	1	228285303	228285303	G	A	SNP	ARF1	ENST00000272102	human	ensembl	74_37	+1	known	missense	c.271	p.V91M	1.000	pfam_Small_GTPase_ARF/SAR,pfam_SRP_receptor_beta_su,pfam_Small_GTPase,pfam_Gtr1_RagA,pfam_Gprotein_alpha_su,pfam_MIRO-like,superfamily_P-loop_NTPase,smart_Small_GTPase_SAR1,smart_Small_GTPase_ARF,smart_Small_GTPase_Rab_type,prints_Small_GTPase_ARF/SAR,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase_ARF/SAR,pfam_SRP_receptor_beta_su,pfam_Small_GTPase,pfam_Gtr1_RagA,pfam_Gprotein_alpha_su,pfam_MIRO-like,superfamily_P-loop_NTPase,smart_Small_GTPase_SAR1,smart_Small_GTPase_ARF,smart_Small_GTPase_Rab_type,prints_Small_GTPase_ARF/SAR,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	ARF1	HGNC	ENSG00000143761				152	1	0.653595	176	38	17.757
ARF1	0	genome.wustl.edu	37	1	228285355	228285355	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	1	228285355	228285355	T	C	SNP	ARF1	ENST00000272102	human	ensembl	74_37	+1	known	missense	c.323	p.M108T	1.000	pfam_Small_GTPase_ARF/SAR,pfam_SRP_receptor_beta_su,pfam_Small_GTPase,pfam_Gtr1_RagA,pfam_Gprotein_alpha_su,pfam_MIRO-like,superfamily_P-loop_NTPase,smart_Small_GTPase_SAR1,smart_Small_GTPase_ARF,smart_Small_GTPase_Rab_type,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase_ARF/SAR,pfam_SRP_receptor_beta_su,pfam_Small_GTPase,pfam_Gtr1_RagA,pfam_Gprotein_alpha_su,pfam_MIRO-like,superfamily_P-loop_NTPase,smart_Small_GTPase_SAR1,smart_Small_GTPase_ARF,smart_Small_GTPase_Rab_type,prints_Small_GTPase_ARF/SAR,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	ARF1	HGNC	ENSG00000143761				123	1	0.806452	138	33	19.2982
OBSCN	0	genome.wustl.edu	37	1	228481116	228481116	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	1	228481116	228481116	G	A	SNP	OBSCN	ENST00000422127	human	ensembl	74_37	+1	known	missense	c.10930	p.V3644M	0.000	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,pfam_DH-domain,pfam_IQ_motif_EF-hand-BS,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_Fibronectin_type3,superfamily_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_IQ_motif_EF-hand-BS,smart_DH-domain,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,pfscan_DH-domain	-	no_errors	OBSCN	HGNC	ENSG00000154358				76	0	0	83	17	17
OBSCN	0	genome.wustl.edu	37	1	228506705	228506705	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	1	228506705	228506705	G	A	SNP	OBSCN	ENST00000422127	human	ensembl	74_37	+1	known	missense	c.14252	p.R4751H	0.998	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,pfam_DH-domain,pfam_IQ_motif_EF-hand-BS,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_Fibronectin_type3,superfamily_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_IQ_motif_EF-hand-BS,smart_DH-domain,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,pfscan_DH-domain	-	no_errors	OBSCN	HGNC	ENSG00000154358				18	0	0	19	4	17.3913
HIST3H3	0	genome.wustl.edu	37	1	228613002	228613002	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	1	228613002	228613002	G	A	SNP	HIST3H3	ENST00000366696	human	ensembl	74_37	-1	known	missense	c.25	p.R9C	0.999	superfamily_Histone-fold,prints_Histone_H3	pfam_Histone_core_D,superfamily_Histone-fold,smart_Histone_H3,prints_Histone_H3	-	no_errors	HIST3H3	HGNC	ENSG00000168148				122	0	0	116	36	23.6842
RAB4A	0	genome.wustl.edu	37	1	229438688	229438688	+	Silent	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	1	229438688	229438688	C	T	SNP	RAB4A	ENST00000366690	human	ensembl	74_37	+1	known	silent	c.621	p.R207	0.002	superfamily_P-loop_NTPase,smart_Ran_GTPase	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_EF_GTP-bd_dom,pfam_Gtr1_RagA,superfamily_P-loop_NTPase,smart_Small_GTPase_ARF,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB4A	HGNC	ENSG00000168118				192	0	0	211	32	13.1687
ACTA1	0	genome.wustl.edu	37	1	229567811	229567811	+	Silent	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	1	229567811	229567811	G	A	SNP	ACTA1	ENST00000366684	human	ensembl	74_37	-1	known	silent	c.738	p.D246	0.996	pfam_Actin-related,smart_Actin-related,prints_Actin-related	pfam_Actin-related,smart_Actin-related,prints_Actin-related	-	no_errors	ACTA1	HGNC	ENSG00000143632				25	0	0	28	7	20
TAF5L	0	genome.wustl.edu	37	1	229750217	229750217	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	1	229750217	229750217	G	A	SNP	TAF5L	ENST00000258281	human	ensembl	74_37	-1	known	missense	c.13	p.R5C	1.000	NULL	pfam_WD40_repeat,pfam_TFIID-su_WD40-assoc_reg,superfamily_WD40_repeat_dom,smart_WD40_repeat,prints_G-protein_beta_WD-40_rep,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	TAF5L	HGNC	ENSG00000135801				75	0	0	107	29	21.3235
URB2	0	genome.wustl.edu	37	1	229773794	229773794	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	1	229773794	229773794	G	A	SNP	URB2	ENST00000258243	human	ensembl	74_37	+1	known	missense	c.3434	p.R1145K	0.000	NULL	pfam_Urb2/Npa2_C	-	no_errors	URB2	HGNC	ENSG00000135763				112	0	0	112	19	14.5038
SLC35F3	0	genome.wustl.edu	37	1	234367374	234367374	+	Silent	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	1	234367374	234367374	G	A	SNP	SLC35F3	ENST00000366617	human	ensembl	74_37	+1	known	silent	c.288	p.A96	0.523	NULL	pfam_DMT,pfam_Tpt_PEP_trans_dom,pfam_SLC35_F1/F2/F6	-	no_errors	SLC35F3	HGNC	ENSG00000183780				249	0	0	321	87	21.3235
NID1	0	genome.wustl.edu	37	1	236148772	236148772	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	1	236148772	236148772	C	T	SNP	NID1	ENST00000264187	human	ensembl	74_37	-1	known	missense	c.2962	p.V988M	1.000	smart_LDLR_classB_rpt	pfam_G2_nidogen/fibulin_G2F,pfam_LDLR_classB_rpt,pfam_Nidogen_extracell_dom,pfam_Thyroglobulin_1,pfam_EGF-like_Ca-bd_dom,superfamily_GFP,superfamily_Thyroglobulin_1,smart_Nidogen_extracell_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_G2_nidogen/fibulin_G2F,smart_Thyroglobulin_1,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDLR_classB_rpt,pfscan_G2_nidogen/fibulin_G2F,pfscan_Thyroglobulin_1	-	no_errors	NID1	HGNC	ENSG00000116962				61	0	0	75	15	16.6667
RYR2	0	genome.wustl.edu	37	1	237656303	237656303	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	1	237656303	237656303	G	A	SNP	RYR2	ENST00000360064	human	ensembl	74_37	+1	known	missense	c.1871	p.R624H	1.000	pfam_Ca-rel_channel,pfscan_B30.2/SPRY	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ConA-like_lec_gl_sf,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_hand_dom,pfscan_MIR_motif	-	no_errors	RYR2	HGNC	ENSG00000198626				8	0	0	16	4	20
RYR2	0	genome.wustl.edu	37	1	237947036	237947036	+	Silent	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	1	237947036	237947036	C	T	SNP	RYR2	ENST00000360064	human	ensembl	74_37	+1	known	silent	c.12042	p.N4014	1.000	NULL	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ConA-like_lec_gl_sf,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_hand_dom,pfscan_MIR_motif	-	no_errors	RYR2	HGNC	ENSG00000198626				30	0	0	16	5	23.8095
WDR64	0	genome.wustl.edu	37	1	241907814	241907814	+	Silent	SNP	T	T	C			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	1	241907814	241907814	T	C	SNP	WDR64	ENST00000366552	human	ensembl	74_37	+1	known	silent	c.1560	p.Y520	0.979	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR64	HGNC	ENSG00000162843				75	0	0	109	30	21.5827
ZNF695	0	genome.wustl.edu	37	1	247151469	247151469	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	1	247151469	247151469	T	A	SNP	ZNF695	ENST00000339986	human	ensembl	74_37	-1	known	missense	c.348	p.R116S	0.488	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF695	HGNC	ENSG00000197472				276	0	0	253	63	19.9367
OR2T3	0	genome.wustl.edu	37	1	248636891	248636891	+	Silent	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	1	248636891	248636891	C	T	SNP	OR2T3	ENST00000359594	human	ensembl	74_37	+1	known	silent	c.240	p.C80	0.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2T3	HGNC	ENSG00000196539				38	0	0	18	13	41.9355
HMGN2	0	genome.wustl.edu	37	1	26801752	26801752	+	RNA	SNP	T	T	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	1	26801752	26801752	T	A	SNP	HMGN2	ENST00000460563	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	HMGN2	HGNC	ENSG00000198830				25	0	0	39	4	9.30233
ARID1A	0	genome.wustl.edu	37	1	27106648	27106648	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	1	27106648	27106648	G	A	SNP	ARID1A	ENST00000324856	human	ensembl	74_37	+1	known	missense	c.6259	p.G2087R	1.000	pfam_DUF3518	pfam_DUF3518,pfam_ARID/BRIGHT_DNA-bd,superfamily_ARID/BRIGHT_DNA-bd,superfamily_ARM-type_fold,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID1A	HGNC	ENSG00000117713				111	0	0	174	47	21.267
PIGV	0	genome.wustl.edu	37	1	27121087	27121087	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	1	27121087	27121087	C	T	SNP	PIGV	ENST00000078527	human	ensembl	74_37	+1	known	nonsense	c.562	p.R188*	1.000	pfam_GPI_Mannosyltransferase_2	pfam_GPI_Mannosyltransferase_2	-	no_errors	PIGV	HGNC	ENSG00000060642				92	0	0	125	26	17.2185
ACTRT2	0	genome.wustl.edu	37	1	2939191	2939191	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	1	2939191	2939191	G	A	SNP	ACTRT2	ENST00000378404	human	ensembl	74_37	+1	known	missense	c.941	p.R314Q	1.000	pfam_Actin-related,smart_Actin-related	pfam_Actin-related,smart_Actin-related,prints_Actin-related	-	no_errors	ACTRT2	HGNC	ENSG00000169717				145	1	0.684932	159	43	21.2871
SPOCD1	0	genome.wustl.edu	37	1	32280324	32280324	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	1	32280324	32280324	C	A	SNP	SPOCD1	ENST00000360482	human	ensembl	74_37	-1	known	missense	c.611	p.R204M	0.000	NULL	pfam_TFIIS_cen_dom,pfam_SPOC_C,superfamily_TFIIS_cen_dom,smart_TFS2M	-	no_errors	SPOCD1	HGNC	ENSG00000134668				203	0	0	286	62	17.8161
PRDM16	0	genome.wustl.edu	37	1	3328020	3328020	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	1	3328020	3328020	G	A	SNP	PRDM16	ENST00000270722	human	ensembl	74_37	+1	known	missense	c.1259	p.R420H	1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Znf_BED_prd,smart_SET_dom,smart_Znf_C2H2-like,pfscan_SET_dom,pfscan_Znf_C2H2	-	no_errors	PRDM16	HGNC	ENSG00000142611				85	0	0	107	12	10.084
MEGF6	0	genome.wustl.edu	37	1	3424477	3424477	+	Silent	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	1	3424477	3424477	C	T	SNP	MEGF6	ENST00000356575	human	ensembl	74_37	-1	known	silent	c.1671	p.P557	0.074	NULL	pfam_EGF_laminin,pfam_EGF-like_Ca-bd_dom,superfamily_Growth_fac_rcpt_N_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_EGF_laminin,pfscan_EG-like_dom,pfscan_EMI_domain	-	no_errors	MEGF6	HGNC	ENSG00000162591				51	0	0	76	16	17.3913
MEGF6	0	genome.wustl.edu	37	1	3432062	3432062	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	1	3432062	3432062	C	T	SNP	MEGF6	ENST00000356575	human	ensembl	74_37	-1	known	missense	c.634	p.G212S	0.998	smart_EGF-like_Ca-bd_dom,smart_EG-like_dom	pfam_EGF_laminin,pfam_EGF-like_Ca-bd_dom,superfamily_Growth_fac_rcpt_N_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_EGF_laminin,pfscan_EG-like_dom,pfscan_EMI_domain	-	no_errors	MEGF6	HGNC	ENSG00000162591				61	0	0	69	9	11.5385
THRAP3	0	genome.wustl.edu	37	1	36752135	36752135	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	1	36752135	36752135	G	T	SNP	THRAP3	ENST00000354618	human	ensembl	74_37	+1	known	nonsense	c.304	p.G102*	1.000	NULL	NULL	-	no_errors	THRAP3	HGNC	ENSG00000054118				235	0	0	246	64	20.6452
THRAP3	0	genome.wustl.edu	37	1	36756997	36756997	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	1	36756997	36756997	G	A	SNP	THRAP3	ENST00000354618	human	ensembl	74_37	+1	known	missense	c.1768	p.E590K	1.000	NULL	NULL	-	no_errors	THRAP3	HGNC	ENSG00000054118				49	0	0	48	12	20
CAP1	0	genome.wustl.edu	37	1	40533259	40533259	+	Silent	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	1	40533259	40533259	C	T	SNP	CAP1	ENST00000372792	human	ensembl	74_37	+1	known	silent	c.678	p.A226	1.000	pfam_Adenylate_cyclase-assoc_CAP_N,superfamily_Adenylate_cyclase-assoc_CAP_N	pfam_Adenylate_cyclase-assoc_CAP_N,pfam_Adenylate_cyclase-assoc_CAP_C,superfamily_Adenylate_cyclase-assoc_CAP_N,superfamily_Adenylate_cyclase-assoc_CAP_C,smart_CARP_motif	-	no_errors	CAP1	HGNC	ENSG00000131236				53	0	0	66	18	21.4286
SCMH1	0	genome.wustl.edu	37	1	41582667	41582667	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	1	41582667	41582667	G	A	SNP	SCMH1	ENST00000326197	human	ensembl	74_37	-1	known	missense	c.398	p.A133V	1.000	NULL	pfam_Mbt,pfam_DUF3588,pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_Mbt,smart_SAM,pfscan_Mbt,pfscan_SAM	-	no_errors	SCMH1	HGNC	ENSG00000010803				45	0	0	56	12	17.6471
SZT2	0	genome.wustl.edu	37	1	43908512	43908512	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	1	43908512	43908512	C	T	SNP	SZT2	ENST00000562955	human	ensembl	74_37	+1	known	missense	c.8003	p.P2668L	0.998	NULL	NULL	-	no_errors	SZT2	HGNC	ENSG00000198198				240	0	0	268	54	16.7702
PTPRF	0	genome.wustl.edu	37	1	44084972	44084972	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	1	44084972	44084972	C	T	SNP	PTPRF	ENST00000359947	human	ensembl	74_37	+1	known	missense	c.4660	p.R1554C	1.000	pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Fibronectin_type3,pfam_Ig_I-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like_dom,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRF	HGNC	ENSG00000142949				48	0	0	63	17	21.25
IPO13	0	genome.wustl.edu	37	1	44429947	44429947	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	1	44429947	44429947	G	A	SNP	IPO13	ENST00000372343	human	ensembl	74_37	+1	known	missense	c.2351	p.R784K	1.000	superfamily_ARM-type_fold	pfam_Exportin-1/Importin-b-like,pfam_Importin-beta_N,superfamily_ARM-type_fold,smart_Importin-beta_N,pfscan_Importin-beta_N	-	no_errors	IPO13	HGNC	ENSG00000117408				148	0	0	164	37	18.408
PLK3	0	genome.wustl.edu	37	1	45271288	45271288	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	1	45271288	45271288	C	T	SNP	PLK3	ENST00000372201	human	ensembl	74_37	+1	known	missense	c.1879	p.P627S	0.998	pfam_POLO_box_duplicated_dom,pfscan_POLO_box_duplicated_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_POLO_box_duplicated_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_POLO_box_duplicated_dom,pfscan_Prot_kinase_dom	-	no_errors	PLK3	HGNC	ENSG00000173846				155	0	0	181	35	16.2037
HECTD3	0	genome.wustl.edu	37	1	45470328	45470328	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	1	45470328	45470328	G	A	SNP	HECTD3	ENST00000372172	human	ensembl	74_37	-1	known	missense	c.2086	p.R696C	1.000	pfam_HECT,superfamily_HECT,smart_HECT,pfscan_HECT	pfam_HECT,pfam_APC_su10/DOC_dom,superfamily_HECT,superfamily_Galactose-bd-like,smart_HECT,pfscan_HECT	-	no_errors	HECTD3	HGNC	ENSG00000126107				200	0	0	233	48	17.0819
LURAP1	0	genome.wustl.edu	37	1	46669228	46669228	+	Silent	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	1	46669228	46669228	C	T	SNP	LURAP1	ENST00000371980	human	ensembl	74_37	+1	known	silent	c.130	p.L44	0.845	NULL	NULL	-	no_errors	LURAP1	HGNC	ENSG00000171357				58	0	0	82	16	16.3265
SLC5A9	0	genome.wustl.edu	37	1	48705022	48705022	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	1	48705022	48705022	T	C	SNP	SLC5A9	ENST00000236495	human	ensembl	74_37	+1	known	missense	c.1565	p.L522P	1.000	pfscan_Na/solute_symporter	pfam_Na/solute_symporter,pfscan_Na/solute_symporter,tigrfam_Na/solute_symporter_subgr	-	no_errors	SLC5A9	HGNC	ENSG00000117834				124	0	0	151	27	15.1685
ZFYVE9	0	genome.wustl.edu	37	1	52800392	52800392	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	1	52800392	52800392	G	A	SNP	ZFYVE9	ENST00000287727	human	ensembl	74_37	+1	known	missense	c.3622	p.A1208T	1.000	pfam_DUF3480,pirsf_Znf_FYVE_SARA/endofin	pfam_DUF3480,pfam_SARA_Smad-bd,pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,smart_Znf_FYVE,pirsf_Znf_FYVE_SARA/endofin,pfscan_Znf_FYVE-rel	-	no_errors	ZFYVE9	HGNC	ENSG00000157077				191	0	0	198	34	14.6552
ACOT11	0	genome.wustl.edu	37	1	55072856	55072856	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	1	55072856	55072856	G	A	SNP	ACOT11	ENST00000371316	human	ensembl	74_37	+1	known	missense	c.1420	p.V474I	0.936	pfam_START_lipid-bd_dom,smart_START_lipid-bd_dom,pfscan_START_lipid-bd_dom	pfam_START_lipid-bd_dom,pfam_Thioestr_supf,smart_START_lipid-bd_dom,pfscan_START_lipid-bd_dom	-	no_errors	ACOT11	HGNC	ENSG00000162390				78	0	0	75	18	19.3548
MROH7-TTC4	0	genome.wustl.edu	37	1	55167778	55167778	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	1	55167778	55167778	C	T	SNP	MROH7-TTC4	ENST00000414150	human	ensembl	74_37	+1	known	missense	c.3301	p.R1101C	0.999	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	MROH7-TTC4	HGNC	ENSG00000271723				29	0	0	41	11	21.1538
INADL	0	genome.wustl.edu	37	1	62341105	62341105	+	RNA	SNP	T	T	C			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	1	62341105	62341105	T	C	SNP	INADL	ENST00000488913	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	INADL	HGNC	ENSG00000132849				56	0	0	88	14	13.7255
L1TD1	0	genome.wustl.edu	37	1	62675694	62675694	+	Silent	SNP	A	A	G			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	1	62675694	62675694	A	G	SNP	L1TD1	ENST00000498273	human	ensembl	74_37	+1	known	silent	c.1248	p.E416	0.000	NULL	pfam_Transposase_22,superfamily_STAT_TF_coiled-coil	-	no_errors	L1TD1	HGNC	ENSG00000240563				66	0	0	91	17	15.7407
ATG4C	0	genome.wustl.edu	37	1	63329809	63329809	+	Silent	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	1	63329809	63329809	G	A	SNP	ATG4C	ENST00000317868	human	ensembl	74_37	+1	known	silent	c.1356	p.T452	0.997	NULL	pfam_Peptidase_C54	-	no_errors	ATG4C	HGNC	ENSG00000125703				58	0	0	78	22	22
UBE2U	0	genome.wustl.edu	37	1	64707368	64707368	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	1	64707368	64707368	A	G	SNP	UBE2U	ENST00000371076	human	ensembl	74_37	+1	known	missense	c.629	p.Y210C	0.874	NULL	pfam_UBQ-conjugat_E2,superfamily_UBQ-conjugating_enzyme/RWD,pfscan_UBQ-conjugat_E2	-	no_errors	UBE2U	HGNC	ENSG00000177414				55	0	0	54	15	21.7391
PLEKHG5	0	genome.wustl.edu	37	1	6533156	6533156	+	Silent	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	1	6533156	6533156	G	A	SNP	PLEKHG5	ENST00000537245	human	ensembl	74_37	-1	known	silent	c.1111	p.L371	1.000	NULL	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PLEKHG5	HGNC	ENSG00000171680				98	0	0	114	35	23.4899
DNAJC6	0	genome.wustl.edu	37	1	65858399	65858399	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	1	65858399	65858399	T	G	SNP	DNAJC6	ENST00000371069	human	ensembl	74_37	+1	known	missense	c.1754	p.F585C	1.000	NULL	pfam_Tensin_phosphatase_C2-dom,pfam_DnaJ_domain,superfamily_DnaJ_domain,superfamily_C2_dom,smart_DnaJ_domain,pfscan_Tyr/Dual-sp_Pase,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom,pfscan_DnaJ_domain	-	no_errors	DNAJC6	HGNC	ENSG00000116675				57	0	0	81	16	16.4948
TAS1R1	0	genome.wustl.edu	37	1	6634730	6634730	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	1	6634730	6634730	C	T	SNP	TAS1R1	ENST00000333172	human	ensembl	74_37	+1	known	missense	c.538	p.R180W	0.241	pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I,prints_GPCR_3	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_GPCR_3_9-Cys_dom,superfamily_Peripla_BP_I,pfscan_GPCR_3_C,prints_GPCR_3	-	no_errors	TAS1R1	HGNC	ENSG00000173662				76	0	0	104	19	15.4472
NEGR1	0	genome.wustl.edu	37	1	72400932	72400932	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	1	72400932	72400932	G	A	SNP	NEGR1	ENST00000357731	human	ensembl	74_37	-1	known	missense	c.239	p.A80V	1.000	pfam_Ig_I-set,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	NEGR1	HGNC	ENSG00000172260				120	0	0	143	29	16.8605
CAMTA1	0	genome.wustl.edu	37	1	7723546	7723546	+	Silent	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	1	7723546	7723546	C	T	SNP	CAMTA1	ENST00000303635	human	ensembl	74_37	+1	known	silent	c.939	p.H313	0.825	NULL	pfam_CG-1_dom,pfam_IPT,pfam_IQ_motif_EF-hand-BS,superfamily_Ig_E-set,superfamily_Ankyrin_rpt-contain_dom,superfamily_P-loop_NTPase,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_IQ_motif_EF-hand-BS	-	no_errors	CAMTA1	HGNC	ENSG00000171735				98	0	0	130	41	23.9766
RERE	0	genome.wustl.edu	37	1	8416191	8416191	+	Silent	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	1	8416191	8416191	G	A	SNP	RERE	ENST00000337907	human	ensembl	74_37	-1	known	silent	c.4455	p.H1485	0.997	pfam_Atrophin-like	pfam_Atrophin-like,pfam_BAH_dom,pfam_ELM2_dom,pfam_Znf_GATA,superfamily_Homeodomain-like,smart_BAH_dom,smart_SANT/Myb,smart_Znf_GATA,pfscan_BAH_dom,pfscan_ELM2_dom	-	no_errors	RERE	HGNC	ENSG00000142599				223	0	0	283	72	20.2817
LMO4	0	genome.wustl.edu	37	1	87810502	87810502	+	RNA	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	1	87810502	87810502	C	T	SNP	LMO4	ENST00000489303	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	LMO4	HGNC	ENSG00000143013				114	0	0	111	26	18.9781
SLC2A7	0	genome.wustl.edu	37	1	9078339	9078339	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	1	9078339	9078339	C	T	SNP	SLC2A7	ENST00000400906	human	ensembl	74_37	-1	known	missense	c.532	p.V178I	0.000	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Sugar/inositol_transpt	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,prints_Sugar/inositol_transpt,pfscan_MFS_dom,tigrfam_Sugar/inositol_transpt	-	no_errors	SLC2A7	HGNC	ENSG00000197241				61	0	0	64	15	18.9873
ZNF644	0	genome.wustl.edu	37	1	91406777	91406777	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	1	91406777	91406777	T	G	SNP	ZNF644	ENST00000337393	human	ensembl	74_37	-1	known	missense	c.134	p.D45A	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF644	HGNC	ENSG00000122482				173	0	0	202	54	21.0938
PIK3CD	0	genome.wustl.edu	37	1	9781845	9781845	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	1	9781845	9781845	C	T	SNP	PIK3CD	ENST00000536656	human	ensembl	74_37	+1	known	missense	c.2054	p.A685V	0.996	pfam_PInositide-3_kin_accessory_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom	pfam_PI3/4_kinase_cat_dom,pfam_PInositide-3_kin_accessory_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,pfam_PI3K_Ras-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_dom,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CD	HGNC	ENSG00000171608				102	0	0	120	31	20.5298
CLSTN1	0	genome.wustl.edu	37	1	9795563	9795563	+	Silent	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	1	9795563	9795563	C	T	SNP	CLSTN1	ENST00000377298	human	ensembl	74_37	-1	known	silent	c.1845	p.T615	0.131	NULL	pfam_Cadherin,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	CLSTN1	HGNC	ENSG00000171603				197	0	0	166	57	25.5605
DPYD	0	genome.wustl.edu	37	1	98058819	98058819	+	Silent	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	1	98058819	98058819	G	A	SNP	DPYD	ENST00000370192	human	ensembl	74_37	-1	known	silent	c.1083	p.I361	1.000	pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD	pfam_Dihydroorotate_DH_1_2,pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,pfam_tRNA_hU_synthase,superfamily_Helical_ferredxn,prints_FAD_pyr_nucl-diS_OxRdtase,tigrfam_Dihydroorotate_DH	-	no_errors	DPYD	HGNC	ENSG00000188641				172	0	0	216	43	16.6023
LPPR5	0	genome.wustl.edu	37	1	99469999	99469999	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	1	99469999	99469999	C	T	SNP	LPPR5	ENST00000263177	human	ensembl	74_37	-1	known	missense	c.229	p.V77M	0.995	superfamily_P_Acid_Pase_2/haloperoxidase	pfam_P_Acid_Pase_2/haloperoxidase,superfamily_P_Acid_Pase_2/haloperoxidase,smart_P_Acid_Pase_2/haloperoxidase	-	no_errors	LPPR5	Uniprot_gn	ENSG00000117598				19	0	0	26	9	25.7143
LBX1	0	genome.wustl.edu	37	10	102988431	102988431	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	10	102988431	102988431	G	A	SNP	LBX1	ENST00000370193	human	ensembl	74_37	-1	known	missense	c.142	p.R48W	1.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_HTH_motif	-	no_errors	LBX1	HGNC	ENSG00000138136				21	0	0	34	7	17.0732
GBF1	0	genome.wustl.edu	37	10	104018769	104018769	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	10	104018769	104018769	G	A	SNP	GBF1	ENST00000369983	human	ensembl	74_37	+1	known	missense	c.74	p.R25Q	1.000	NULL	pfam_Sec7_dom,superfamily_Sec7_dom,superfamily_ARM-type_fold,smart_Sec7_dom,pfscan_Sec7_dom	-	no_errors	GBF1	HGNC	ENSG00000107862				164	0	0	167	56	25.1121
NT5C2	0	genome.wustl.edu	37	10	104934693	104934693	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	10	104934693	104934693	C	T	SNP	NT5C2	ENST00000343289	human	ensembl	74_37	-1	known	missense	c.23	p.R8Q	1.000	pirsf_Pur_nucleotidase	pfam_HAD-SF_hydro_IG_5-nucl,superfamily_HAD-like_dom,pirsf_Pur_nucleotidase,tigrfam_HAD-SF_hydro_IG_5-nucl	-	no_errors	NT5C2	HGNC	ENSG00000076685				278	0	0	295	56	15.9544
PDCD11	0	genome.wustl.edu	37	10	105178356	105178356	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	10	105178356	105178356	C	T	SNP	PDCD11	ENST00000369797	human	ensembl	74_37	+1	known	nonsense	c.2071	p.R691*	0.134	superfamily_NA-bd_OB-fold,smart_RNA-binding_domain_S1,pfscan_Rbsml_prot_S1_RNA-bd_dom	pfam_Rbsml_prot_S1_RNA-bd_dom,pfam_Suf,superfamily_NA-bd_OB-fold,smart_RNA-binding_domain_S1,smart_HAT,pfscan_TPR-contain_dom,pfscan_Rbsml_prot_S1_RNA-bd_dom,prints_Ribosomal_S1	-	no_errors	PDCD11	HGNC	ENSG00000148843				57	0	0	97	19	16.3793
COL17A1	0	genome.wustl.edu	37	10	105816869	105816869	+	Silent	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	10	105816869	105816869	G	A	SNP	COL17A1	ENST00000353479	human	ensembl	74_37	-1	known	silent	c.1329	p.G443	0.000	NULL	pfam_Collagen	-	no_errors	COL17A1	HGNC	ENSG00000065618				61	0	0	92	26	22.0339
C10orf118	0	genome.wustl.edu	37	10	115884951	115884951	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	10	115884951	115884951	C	T	SNP	C10orf118	ENST00000369287	human	ensembl	74_37	-1	known	missense	c.2648	p.R883H	0.998	NULL	superfamily_Prefoldin	-	no_errors	C10orf118	HGNC	ENSG00000165813				64	0	0	49	9	15.5172
ABLIM1	0	genome.wustl.edu	37	10	116232891	116232891	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	10	116232891	116232891	C	T	SNP	ABLIM1	ENST00000277895	human	ensembl	74_37	-1	known	missense	c.1120	p.A374T	1.000	NULL	pfam_Znf_LIM,pfam_Villin_headpiece,superfamily_Villin_headpiece,smart_Znf_LIM,smart_Villin_headpiece,pfscan_Villin_headpiece,pfscan_Znf_LIM	-	no_errors	ABLIM1	HGNC	ENSG00000099204				161	0	0	162	43	20.9756
GFRA1	0	genome.wustl.edu	37	10	118030416	118030416	+	Silent	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	10	118030416	118030416	G	A	SNP	GFRA1	ENST00000355422	human	ensembl	74_37	-1	known	silent	c.252	p.L84	0.531	pfam_GDNF/GAS1,smart_GDNF/GAS1,pirsf_Glial_neurotroph_fac_rcpt_a1/2,prints_GDNF_rcpt_A1	pfam_GDNF/GAS1,smart_GDNF/GAS1,pirsf_Glial_neurotroph_fac_rcpt_a1/2,prints_GDNF_rcpt,prints_GDNF_rcpt_A1	-	no_errors	GFRA1	HGNC	ENSG00000151892				50	0	0	73	17	18.8889
PNLIP	0	genome.wustl.edu	37	10	118313341	118313341	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	10	118313341	118313341	C	T	SNP	PNLIP	ENST00000369221	human	ensembl	74_37	+1	known	missense	c.562	p.R188C	0.961	pfam_Lipase_N,pirsf_Lipoprotein_lipase_LIPH	pfam_Lipase_N,pfam_PLAT/LH2_dom,superfamily_Lipase_LipOase,smart_PLAT/LH2_dom,pirsf_Lipoprotein_lipase_LIPH,pfscan_PLAT/LH2_dom,prints_Lipase,prints_Lipase_panc	-	no_errors	PNLIP	HGNC	ENSG00000175535				58	0	0	58	14	19.4444
BAG3	0	genome.wustl.edu	37	10	121429560	121429560	+	Silent	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	10	121429560	121429560	G	A	SNP	BAG3	ENST00000369085	human	ensembl	74_37	+1	known	silent	c.378	p.A126	0.004	NULL	pfam_BAG_domain,pfam_WW_dom,superfamily_WW_dom,smart_WW_dom,smart_BAG_domain,pfscan_BAG_domain,pfscan_WW_dom	-	no_errors	BAG3	HGNC	ENSG00000151929				170	0	0	209	48	18.677
ACADSB	0	genome.wustl.edu	37	10	124810661	124810661	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	10	124810661	124810661	T	C	SNP	ACADSB	ENST00000358776	human	ensembl	74_37	+1	known	missense	c.1087	p.F363L	0.918	pfam_AcylCo_DH/oxidase_C,pfam_Acyl-CoA_DH_2_C,superfamily_AcylCo_DH/oxidase_C	pfam_AcylCo_DH/oxidase_C,pfam_AcylCoA_DH/ox_N,pfam_Acyl-CoA_DH_2_C,pfam_Acyl-CoA_Oxase/DH_cen-dom,superfamily_AcylCoA_DH/oxidase_NM_dom,superfamily_AcylCo_DH/oxidase_C	-	no_errors	ACADSB	HGNC	ENSG00000196177				17	0	0	37	8	17.7778
HMX2	0	genome.wustl.edu	37	10	124909353	124909353	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	10	124909353	124909353	G	A	SNP	HMX2	ENST00000339992	human	ensembl	74_37	+1	known	missense	c.536	p.R179H	1.000	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa	-	no_errors	HMX2	HGNC	ENSG00000188816				29	0	0	46	14	23.3333
DOCK1	0	genome.wustl.edu	37	10	128851016	128851016	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	10	128851016	128851016	A	C	SNP	DOCK1	ENST00000280333	human	ensembl	74_37	+1	known	missense	c.2210	p.K737T	0.999	superfamily_ARM-type_fold	pfam_DOCK_C,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,superfamily_ARM-type_fold,superfamily_Cyt_c-like_dom,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	DOCK1	HGNC	ENSG00000150760				80	0	0	78	25	24.2718
MCM10	0	genome.wustl.edu	37	10	13217572	13217572	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	10	13217572	13217572	C	T	SNP	MCM10	ENST00000484800	human	ensembl	74_37	+1	known	missense	c.658	p.R220W	0.884	NULL	pfam_Rep_factor_Mcm10,pfam_Znf_Mcm10/DnaG	-	no_errors	MCM10	HGNC	ENSG00000065328				203	0	0	230	50	17.8571
DPYSL4	0	genome.wustl.edu	37	10	134004293	134004293	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	10	134004293	134004293	G	A	SNP	DPYSL4	ENST00000338492	human	ensembl	74_37	+1	known	missense	c.82	p.D28N	1.000	superfamily_Metal-dep_hydrolase_composite,tigrfam_Hydantoinase/dihydroPyrase	pfam_Amidohydro_1,superfamily_Metal-dep_hydrolase_composite,tigrfam_Hydantoinase/dihydroPyrase	-	no_errors	DPYSL4	HGNC	ENSG00000151640				56	0	0	73	14	16.092
KNDC1	0	genome.wustl.edu	37	10	134999950	134999950	+	Silent	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	10	134999950	134999950	G	A	SNP	KNDC1	ENST00000368572	human	ensembl	74_37	+1	known	silent	c.1098	p.E366	0.047	NULL	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,superfamily_Ras_GEF_dom,superfamily_Kinase-like_dom,smart_KIND,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	KNDC1	HGNC	ENSG00000171798				41	0	0	40	16	28.5714
HSPA14	0	genome.wustl.edu	37	10	14881910	14881910	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	10	14881910	14881910	C	T	SNP	HSPA14	ENST00000378372	human	ensembl	74_37	+1	known	missense	c.64	p.R22W	1.000	pfam_Hsp_70_fam	pfam_Hsp_70_fam,pfam_MreB_Mrl,prints_Hsp_70_fam	-	no_errors	HSPA14	HGNC	ENSG00000187522				166	0	0	162	29	15.1832
CUBN	0	genome.wustl.edu	37	10	16948350	16948350	+	Silent	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	10	16948350	16948350	G	A	SNP	CUBN	ENST00000377833	human	ensembl	74_37	-1	known	silent	c.7764	p.D2588	0.479	pfam_CUB_dom,superfamily_CUB_dom,smart_CUB_dom,pfscan_CUB_dom	pfam_CUB_dom,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,superfamily_CUB_dom,superfamily_Growth_fac_rcpt_N_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_CUB_dom,pfscan_CUB_dom,pfscan_EG-like_dom	-	no_errors	CUBN	HGNC	ENSG00000107611				126	0	0	150	26	14.7727
KIAA1462	0	genome.wustl.edu	37	10	30318027	30318027	+	Silent	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	10	30318027	30318027	C	T	SNP	KIAA1462	ENST00000375377	human	ensembl	74_37	-1	known	silent	c.1050	p.P350	0.020	NULL	NULL	-	no_errors	KIAA1462	HGNC	ENSG00000165757				267	0	0	304	60	16.4835
PFKP	0	genome.wustl.edu	37	10	3155640	3155640	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	10	3155640	3155640	G	A	SNP	PFKP	ENST00000381125	human	ensembl	74_37	+1	known	missense	c.1301	p.R434H	0.995	pfam_Phosphofructokinase_dom,superfamily_Phosphofructokinase_dom,pirsf_6-phosphofructokinase_euk,tigrfam_6-phosphofructokinase_euk	pfam_Phosphofructokinase_dom,superfamily_Phosphofructokinase_dom,pirsf_6-phosphofructokinase_euk,prints_Phosphofructokinase,tigrfam_6-phosphofructokinase_euk	-	no_errors	PFKP	HGNC	ENSG00000067057				39	0	0	54	7	11.4754
ARHGAP12	0	genome.wustl.edu	37	10	32101590	32101590	+	RNA	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	10	32101590	32101590	C	T	SNP	ARHGAP12	ENST00000497103	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ARHGAP12	HGNC	ENSG00000165322				66	0	0	77	11	12.5
PARD3	0	genome.wustl.edu	37	10	34573135	34573135	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	10	34573135	34573135	G	A	SNP	PARD3	ENST00000374789	human	ensembl	74_37	-1	known	missense	c.3113	p.T1038M	1.000	NULL	pfam_DUF3534,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	PARD3	HGNC	ENSG00000148498				284	0	0	283	58	17.0088
FZD8	0	genome.wustl.edu	37	10	35929386	35929386	+	Silent	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	10	35929386	35929386	C	T	SNP	FZD8	ENST00000374694	human	ensembl	74_37	-1	known	silent	c.972	p.S324	0.055	pfam_Frizzled,pfscan_GPCR_2-like,prints_Frizzled	pfam_Frizzled,pfam_Frizzled_dom,superfamily_Frizzled_dom,smart_Frizzled_dom,pfscan_Frizzled_dom,pfscan_GPCR_2-like,prints_Frizzled	-	no_errors	FZD8	HGNC	ENSG00000177283				19	0	0	29	7	19.4444
C10orf10	0	genome.wustl.edu	37	10	45472904	45472904	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	10	45472904	45472904	C	T	SNP	C10orf10	ENST00000298295	human	ensembl	74_37	-1	known	missense	c.575	p.R192H	0.000	NULL	NULL	-	no_errors	C10orf10	HGNC	ENSG00000165507				134	0	0	180	37	17.0507
NPY4R	0	genome.wustl.edu	37	10	47087852	47087852	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	10	47087852	47087852	G	A	SNP	NPY4R	ENST00000374312	human	ensembl	74_37	+1	known	missense	c.1069	p.V357I	0.973	prints_NPY4_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_NPY4_rcpt,prints_GPCR_Rhodpsn,prints_NPY_rcpt	-	no_errors	NPY4R	HGNC	ENSG00000204174				260	0	0	361	30	7.67263
MAPK8	0	genome.wustl.edu	37	10	49632628	49632628	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	10	49632628	49632628	C	T	SNP	MAPK8	ENST00000374176	human	ensembl	74_37	+1	known	missense	c.688	p.H230Y	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_MAPK_JNK,pfscan_Prot_kinase_dom	-	no_errors	MAPK8	HGNC	ENSG00000107643				163	1	0.609756	130	31	19.2547
ERCC6	0	genome.wustl.edu	37	10	50736485	50736485	+	Silent	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	10	50736485	50736485	G	A	SNP	ERCC6	ENST00000355832	human	ensembl	74_37	-1	known	silent	c.630	p.H210	0.000	NULL	pfam_SNF2_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	ERCC6	HGNC	ENSG00000225830				109	0	0	125	31	19.8718
ANK3	0	genome.wustl.edu	37	10	62021646	62021646	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	10	62021646	62021646	G	A	SNP	ANK3	ENST00000280772	human	ensembl	74_37	-1	known	nonsense	c.769	p.R257*	1.000	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_ZU5,pfam_Death_domain,superfamily_Ankyrin_rpt-contain_dom,superfamily_DEATH-like_dom,smart_Ankyrin_rpt,smart_ZU5,smart_Death_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Death_domain,pfscan_ZU5,prints_Ankyrin_rpt	-	no_errors	ANK3	HGNC	ENSG00000151150				71	0	0	110	20	15.3846
ARID5B	0	genome.wustl.edu	37	10	63852248	63852248	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	10	63852248	63852248	C	G	SNP	ARID5B	ENST00000279873	human	ensembl	74_37	+1	known	missense	c.3026	p.A1009G	0.876	NULL	pfam_ARID/BRIGHT_DNA-bd,superfamily_ARID/BRIGHT_DNA-bd,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID5B	HGNC	ENSG00000150347				210	0	0	211	32	13.1687
ARID5B	0	genome.wustl.edu	37	10	63852392	63852392	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	10	63852392	63852392	C	T	SNP	ARID5B	ENST00000279873	human	ensembl	74_37	+1	known	missense	c.3170	p.A1057V	0.008	NULL	pfam_ARID/BRIGHT_DNA-bd,superfamily_ARID/BRIGHT_DNA-bd,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID5B	HGNC	ENSG00000150347				132	0	0	163	10	5.78035
PALD1	0	genome.wustl.edu	37	10	72324139	72324139	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	10	72324139	72324139	C	T	SNP	PALD1	ENST00000263563	human	ensembl	74_37	+1	known	missense	c.2282	p.A761V	0.994	NULL	smart_Tyr_Pase_cat	-	no_errors	PALD1	HGNC	ENSG00000107719				147	0	0	160	45	21.9512
SFMBT2	0	genome.wustl.edu	37	10	7290522	7290522	+	Silent	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	10	7290522	7290522	C	T	SNP	SFMBT2	ENST00000361972	human	ensembl	74_37	-1	known	silent	c.960	p.A320	0.998	pfam_Mbt,smart_Mbt,pfscan_Mbt	pfam_Mbt,pfam_DUF3588,pfam_SAM_type1,pfam_Pointed_dom,superfamily_SAM/pointed,superfamily_ARM-type_fold,smart_Mbt,smart_SAM,pfscan_Mbt	-	no_errors	SFMBT2	HGNC	ENSG00000198879				89	0	0	104	14	11.8644
AGAP5	0	genome.wustl.edu	37	10	75435611	75435611	+	Silent	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	10	75435611	75435611	C	T	SNP	AGAP5	ENST00000374094	human	ensembl	74_37	-1	known	silent	c.807	p.P269	1.000	NULL	pfam_ArfGAP,pfam_Pleckstrin_homology,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Pleckstrin_homology,smart_ArfGAP,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Pleckstrin_homology,pfscan_ArfGAP,prints_ArfGAP	-	no_errors	AGAP5	HGNC	ENSG00000172650				238	0	0	285	64	18.3381
ITIH2	0	genome.wustl.edu	37	10	7769693	7769693	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	10	7769693	7769693	G	A	SNP	ITIH2	ENST00000358415	human	ensembl	74_37	+1	known	missense	c.1181	p.R394Q	1.000	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_ITI_HC_C,pfam_VIT,pfam_VWF_A,smart_VIT,smart_VWF_A,pfscan_VWF_A	-	no_errors	ITIH2	HGNC	ENSG00000151655				81	0	0	106	20	15.873
DLG5	0	genome.wustl.edu	37	10	79576781	79576781	+	Silent	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	10	79576781	79576781	G	A	SNP	DLG5	ENST00000372391	human	ensembl	74_37	-1	known	silent	c.3858	p.V1286	0.031	NULL	pfam_PDZ,pfam_DUF622,pfam_GK/Ca_channel_bsu,superfamily_P-loop_NTPase,superfamily_PDZ,superfamily_SH3_domain,superfamily_DEATH-like_dom,smart_PDZ,smart_SH3_domain,smart_GK/Ca_channel_bsu,pfscan_CARD,pfscan_PDZ,pfscan_SH3_domain,pfscan_Guanylate_kin-like	-	no_errors	DLG5	HGNC	ENSG00000151208				128	0	0	97	28	22.4
POLR3A	0	genome.wustl.edu	37	10	79752975	79752975	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	10	79752975	79752975	T	C	SNP	POLR3A	ENST00000372371	human	ensembl	74_37	-1	known	missense	c.2767	p.R923G	1.000	pfam_RNA_pol_Rpb1_5	pfam_RNA_pol_Rpb1_1,pfam_RNA_pol_Rpb1_5,pfam_RNA_pol_asu,pfam_RNA_pol_Rpb1_3,pfam_RNA_pol_Rpb1_4,smart_RNA_pol_N	-	no_errors	POLR3A	HGNC	ENSG00000148606				249	0	0	234	67	22.2591
EIF5AL1	0	genome.wustl.edu	37	10	81272560	81272560	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	10	81272560	81272560	G	A	SNP	EIF5AL1	ENST00000520547	human	ensembl	74_37	+1	known	missense	c.155	p.G52D	1.000	superfamily_Translation_prot_SH3-like,pirsf_Transl_elong_IF5A,tigrfam_Transl_elong_IF5A	pfam_Transl_elong_IF5A_C,superfamily_Translation_prot_SH3-like,superfamily_NA-bd_OB-fold,pirsf_Transl_elong_IF5A,tigrfam_Transl_elong_IF5A	-	no_errors	EIF5AL1	HGNC	ENSG00000253626				19	0	0	21	10	32.2581
MAT1A	0	genome.wustl.edu	37	10	82033576	82033576	+	Silent	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	10	82033576	82033576	G	A	SNP	MAT1A	ENST00000372213	human	ensembl	74_37	-1	known	silent	c.1149	p.S383	0.083	pfam_S-AdoMet_synt_C,superfamily_S-AdoMet_synthetase_sfam,pirsf_S-AdoMet_synthetase,tigrfam_S-AdoMet_synthetase	pfam_S-AdoMet_synt_C,pfam_S-AdoMet_synt_central,pfam_S-AdoMet_synt_N,superfamily_S-AdoMet_synthetase_sfam,pirsf_S-AdoMet_synthetase,tigrfam_S-AdoMet_synthetase	-	no_errors	MAT1A	HGNC	ENSG00000151224				304	0	0	348	73	17.3397
LDB3	0	genome.wustl.edu	37	10	88439846	88439846	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	10	88439846	88439846	C	T	SNP	LDB3	ENST00000429277	human	ensembl	74_37	+1	known	missense	c.253	p.R85C	1.000	superfamily_PDZ	pfam_Znf_LIM,pfam_PDZ,superfamily_PDZ,smart_PDZ,smart_ZASP,smart_Znf_LIM,pfscan_Znf_LIM,pfscan_PDZ	-	no_errors	LDB3	HGNC	ENSG00000122367				69	0	0	85	17	16.6667
LIPA	0	genome.wustl.edu	37	10	91005477	91005477	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	10	91005477	91005477	C	T	SNP	LIPA	ENST00000336233	human	ensembl	74_37	-1	known	missense	c.185	p.C62Y	1.000	pfam_AB_hydrolase_lipase	pfam_AB_hydrolase_1,pfam_AB_hydrolase_lipase	-	no_errors	LIPA	HGNC	ENSG00000107798				120	0	0	139	34	19.6532
IFIT1B	0	genome.wustl.edu	37	10	91143252	91143252	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	10	91143252	91143252	T	C	SNP	IFIT1B	ENST00000371809	human	ensembl	74_37	+1	known	missense	c.182	p.V61A	0.956	smart_TPR_repeat	smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	IFIT1B	HGNC	ENSG00000204010				138	0	0	160	31	16.2304
PPP1R3C	0	genome.wustl.edu	37	10	93389996	93389996	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	10	93389996	93389996	A	T	SNP	PPP1R3C	ENST00000238994	human	ensembl	74_37	-1	known	missense	c.642	p.D214E	1.000	pfam_CBM_21,pirsf_Pase-1_Glycogen_target-su_met,pfscan_CBM_21	pfam_CBM_21,pirsf_Pase-1_Glycogen_target-su_met,pfscan_CBM_21	-	no_errors	PPP1R3C	HGNC	ENSG00000119938				166	0	0	179	34	15.9624
MARCH5	0	genome.wustl.edu	37	10	94109437	94109437	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	10	94109437	94109437	G	T	SNP	MARCH5	ENST00000358935	human	ensembl	74_37	+1	known	missense	c.563	p.C188F	1.000	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING-CH	-	no_errors	MARCH5	HGNC	ENSG00000198060				640	0	0	663	142	17.6398
TBC1D12	0	genome.wustl.edu	37	10	96259980	96259980	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	10	96259980	96259980	G	A	SNP	TBC1D12	ENST00000225235	human	ensembl	74_37	+1	known	missense	c.1415	p.R472H	1.000	superfamily_Rab-GTPase-TBC_dom	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D12	HGNC	ENSG00000108239				64	0	0	65	15	18.75
HELLS	0	genome.wustl.edu	37	10	96333921	96333921	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	10	96333921	96333921	G	A	SNP	HELLS	ENST00000371332	human	ensembl	74_37	+1	known	missense	c.682	p.V228I	1.000	pfam_SNF2_N,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd	pfam_SNF2_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	HELLS	HGNC	ENSG00000119969				155	0	0	183	33	15.2778
CYP2C19	0	genome.wustl.edu	37	10	96535238	96535238	+	Silent	SNP	T	T	C			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	10	96535238	96535238	T	C	SNP	CYP2C19	ENST00000371321	human	ensembl	74_37	+1	known	silent	c.423	p.I141	0.994	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_B	-	no_errors	CYP2C19	HGNC	ENSG00000165841				214	0	0	203	46	18.4739
SLIT1	0	genome.wustl.edu	37	10	98823348	98823348	+	Silent	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	10	98823348	98823348	G	A	SNP	SLIT1	ENST00000266058	human	ensembl	74_37	-1	known	silent	c.657	p.C219	0.828	smart_Cys-rich_flank_reg_C	pfam_Leu-rich_rpt,pfam_Laminin_G,pfam_EG-like_dom,pfam_LRR-contain_N,pfam_Cys-rich_flank_reg_C,superfamily_ConA-like_lec_gl_sf,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_Fol_N,smart_Laminin_G,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	SLIT1	HGNC	ENSG00000187122				29	0	0	36	10	21.7391
CRTAC1	0	genome.wustl.edu	37	10	99677361	99677361	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	10	99677361	99677361	C	T	SNP	CRTAC1	ENST00000370597	human	ensembl	74_37	-1	known	missense	c.611	p.G204D	1.000	NULL	pfam_FG-GAP,pfam_UnbV_ASPIC,pfam_EGF-like_Ca-bd_dom,smart_EGF-like_Ca-bd_dom	-	no_errors	CRTAC1	HGNC	ENSG00000095713				75	0	0	71	19	21.1111
MUC6	0	genome.wustl.edu	37	11	1018685	1018685	+	Silent	SNP	T	T	C			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	11	1018685	1018685	T	C	SNP	MUC6	ENST00000421673	human	ensembl	74_37	-1	known	silent	c.4116	p.P1372	0.203	NULL	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_Cys_knot_C,pfscan_Cys_knot_C	-	no_errors	MUC6	HGNC	ENSG00000184956				213	0	0	244	73	23.0284
MMP7	0	genome.wustl.edu	37	11	102398591	102398591	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	11	102398591	102398591	C	T	SNP	MMP7	ENST00000260227	human	ensembl	74_37	-1	known	missense	c.232	p.V78I	0.000	pfam_Peptidoglycan-bd-like,superfamily_Peptidoglycan-bd-like	pfam_Pept_M10_metallopeptidase,pfam_Peptidoglycan-bd-like,superfamily_Peptidoglycan-bd-like,smart_Peptidase_Metallo,prints_Pept_M10A	-	no_errors	MMP7	HGNC	ENSG00000137673				144	0	0	155	36	18.8482
EXPH5	0	genome.wustl.edu	37	11	108382068	108382068	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	11	108382068	108382068	A	G	SNP	EXPH5	ENST00000265843	human	ensembl	74_37	-1	known	missense	c.4166	p.L1389S	0.000	NULL	superfamily_Znf_FYVE_PHD,pfscan_Znf_FYVE-typ	-	no_errors	EXPH5	HGNC	ENSG00000110723				79	0	0	111	23	17.1642
ZBTB16	0	genome.wustl.edu	37	11	113934884	113934884	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	11	113934884	113934884	G	A	SNP	ZBTB16	ENST00000335953	human	ensembl	74_37	+1	known	missense	c.862	p.V288I	1.000	NULL	pfam_Znf_C2H2,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB16	HGNC	ENSG00000109906				101	0	0	122	30	19.7368
GALNT18	0	genome.wustl.edu	37	11	11470334	11470334	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	11	11470334	11470334	G	A	SNP	GALNT18	ENST00000227756	human	ensembl	74_37	-1	known	missense	c.385	p.R129C	1.000	NULL	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	GALNT18	HGNC	ENSG00000110328				35	0	0	28	14	33.3333
BUD13	0	genome.wustl.edu	37	11	116631626	116631626	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	11	116631626	116631626	C	T	SNP	BUD13	ENST00000260210	human	ensembl	74_37	-1	known	missense	c.1079	p.R360Q	0.808	NULL	pfam_Bud13	-	no_errors	BUD13	HGNC	ENSG00000137656				122	0	0	116	35	23.1788
APOA5	0	genome.wustl.edu	37	11	116661768	116661768	+	Silent	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	11	116661768	116661768	G	A	SNP	APOA5	ENST00000227665	human	ensembl	74_37	-1	known	silent	c.177	p.S59	0.001	pfam_ApoA1_A4_E	pfam_ApoA1_A4_E	-	no_errors	APOA5	HGNC	ENSG00000110243				50	0	0	54	15	21.7391
SIDT2	0	genome.wustl.edu	37	11	117064605	117064605	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	11	117064605	117064605	C	T	SNP	SIDT2	ENST00000278951	human	ensembl	74_37	+1	known	missense	c.2311	p.L771F	1.000	NULL	NULL	-	no_errors	SIDT2	HGNC	ENSG00000149577				111	1	0.892857	120	26	17.8082
PCSK7	0	genome.wustl.edu	37	11	117077045	117077045	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	11	117077045	117077045	C	T	SNP	PCSK7	ENST00000320934	human	ensembl	74_37	-1	known	missense	c.2026	p.V676I	0.868	NULL	pfam_Peptidase_S8/S53_dom,pfam_PrprotnconvertsP,superfamily_Peptidase_S8/S53_dom,superfamily_Galactose-bd-like,superfamily_Prot_inh_propept,prints_Peptidase_S8_subtilisin-rel	-	no_errors	PCSK7	HGNC	ENSG00000160613				110	0	0	129	25	16.2338
ARCN1	0	genome.wustl.edu	37	11	118454580	118454580	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	11	118454580	118454580	G	T	SNP	ARCN1	ENST00000264028	human	ensembl	74_37	+1	known	missense	c.504	p.Q168H	1.000	NULL	pfam_Clathrin_mu_C,pfam_AP_mu_sigma_su,superfamily_Clathrin_mu_C,superfamily_Longin-like_dom,pfscan_Clathrin_mu_C	-	no_errors	ARCN1	HGNC	ENSG00000095139				133	1	0.746269	169	32	15.9204
TMEM136	0	genome.wustl.edu	37	11	120201049	120201049	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	11	120201049	120201049	C	T	SNP	TMEM136	ENST00000314475	human	ensembl	74_37	+1	known	missense	c.629	p.T210M	0.719	pfam_TLC-dom,smart_TLC-dom,pfscan_TLC-dom	pfam_TLC-dom,smart_TLC-dom,pfscan_TLC-dom	-	no_errors	TMEM136	HGNC	ENSG00000181264				27	0	0	28	9	24.3243
MICAL2	0	genome.wustl.edu	37	11	12225908	12225908	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	11	12225908	12225908	G	A	SNP	MICAL2	ENST00000256194	human	ensembl	74_37	+1	known	missense	c.376	p.V126M	1.000	NULL	pfam_CH-domain,pfam_CAMSAP_CH,pfam_Znf_LIM,pfam_mOase_FAD-bd,pfam_FAD_bind_dom,superfamily_CH-domain,smart_CH-domain,smart_Znf_LIM,pfscan_CH-domain,pfscan_Znf_LIM,prints_Rng_hydrolase-like	-	no_errors	MICAL2	HGNC	ENSG00000133816				144	0	0	150	41	21.466
SCN3B	0	genome.wustl.edu	37	11	123508896	123508896	+	Silent	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	11	123508896	123508896	G	A	SNP	SCN3B	ENST00000299333	human	ensembl	74_37	-1	known	silent	c.582	p.N194	0.768	NULL	pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,pfscan_Ig-like_dom	-	no_errors	SCN3B	HGNC	ENSG00000166257				37	0	0	47	10	17.5439
OR10G8	0	genome.wustl.edu	37	11	123900389	123900389	+	Silent	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	11	123900389	123900389	G	A	SNP	OR10G8	ENST00000431524	human	ensembl	74_37	+1	known	silent	c.60	p.A20	0.003	NULL	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR10G8	HGNC	ENSG00000234560				249	0	0	279	62	18.1818
OR8G1	0	genome.wustl.edu	37	11	124121150	124121150	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	11	124121150	124121150	C	A	SNP	OR8G1	ENST00000341493	human	ensembl	74_37	+1	known	missense	c.728	p.S243Y	0.556	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR8G1	HGNC	ENSG00000197849				143	0	0	137	38	21.7143
MSANTD2	0	genome.wustl.edu	37	11	124637344	124637344	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	11	124637344	124637344	T	C	SNP	MSANTD2	ENST00000374979	human	ensembl	74_37	-1	known	missense	c.1408	p.T470A	0.624	NULL	NULL	-	no_errors	MSANTD2	HGNC	ENSG00000120458				284	0	0	288	69	19.3277
MUC5B	0	genome.wustl.edu	37	11	1250470	1250470	+	Silent	SNP	C	C	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	11	1250470	1250470	C	A	SNP	MUC5B	ENST00000447027	human	ensembl	74_37	+1	known	silent	c.1047	p.P349	0.038	pfam_TIL_dom,superfamily_TIL_dom	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,pfam_VWF_C,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_C	-	no_errors	MUC5B	HGNC	ENSG00000117983				12	0	0	13	5	27.7778
MUC5B	0	genome.wustl.edu	37	11	1250991	1250991	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	11	1250991	1250991	C	T	SNP	MUC5B	ENST00000447027	human	ensembl	74_37	+1	known	missense	c.1183	p.R395C	0.091	smart_VWC_out,smart_VWF_C	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,pfam_VWF_C,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_C	-	no_errors	MUC5B	HGNC	ENSG00000117983				11	0	0	9	4	30.7692
CDON	0	genome.wustl.edu	37	11	125867186	125867186	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	11	125867186	125867186	G	A	SNP	CDON	ENST00000392693	human	ensembl	74_37	-1	known	missense	c.2278	p.R760W	0.992	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	CDON	HGNC	ENSG00000064309				71	0	0	103	9	8.03571
TIRAP	0	genome.wustl.edu	37	11	126162425	126162425	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	11	126162425	126162425	G	A	SNP	TIRAP	ENST00000392678	human	ensembl	74_37	+1	known	missense	c.121	p.E41K	0.022	pirsf_Tol-interleuk_rcpt_adapt_Tirap	pfam_TIR_dom,superfamily_TIR_dom,pirsf_Tol-interleuk_rcpt_adapt_Tirap,pfscan_TIR_dom	-	no_errors	TIRAP	HGNC	ENSG00000150455				41	0	0	58	14	19.4444
FLI1	0	genome.wustl.edu	37	11	128638142	128638142	+	Silent	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	11	128638142	128638142	C	T	SNP	FLI1	ENST00000527786	human	ensembl	74_37	+1	known	silent	c.360	p.N120	0.987	pfam_Pointed_dom,superfamily_SAM/pointed,smart_Pointed_dom	pfam_Ets_dom,pfam_Pointed_dom,superfamily_SAM/pointed,smart_Pointed_dom,smart_Ets_dom,pfscan_Ets_dom,prints_Ets_dom	-	no_errors	FLI1	HGNC	ENSG00000151702				60	0	0	70	11	13.5802
BARX2	0	genome.wustl.edu	37	11	129306838	129306838	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	11	129306838	129306838	C	T	SNP	BARX2	ENST00000281437	human	ensembl	74_37	+1	known	missense	c.380	p.T127M	0.989	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_HTH_motif,prints_Homeobox_metazoa	-	no_errors	BARX2	HGNC	ENSG00000043039				36	0	0	50	8	13.7931
JAM3	0	genome.wustl.edu	37	11	134015869	134015869	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	11	134015869	134015869	C	T	SNP	JAM3	ENST00000529443	human	ensembl	74_37	+1	known	missense	c.776	p.S259F	0.995	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,pfam_CD80_C2-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,pfam_CD80_C2-set,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	-	no_errors	JAM3	HGNC	ENSG00000166086				120	0	0	144	30	17.2414
NCAPD3	0	genome.wustl.edu	37	11	134038926	134038926	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	11	134038926	134038926	T	C	SNP	NCAPD3	ENST00000534548	human	ensembl	74_37	-1	known	missense	c.3125	p.H1042R	1.000	superfamily_ARM-type_fold,pirsf_NCAPD3	superfamily_ARM-type_fold,pirsf_NCAPD3	-	no_errors	NCAPD3	HGNC	ENSG00000151503				69	0	0	60	18	23.0769
GLB1L3	0	genome.wustl.edu	37	11	134151966	134151966	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	11	134151966	134151966	G	A	SNP	GLB1L3	ENST00000431683	human	ensembl	74_37	+1	known	missense	c.479	p.R160H	1.000	pfam_Glycoside_Hdrlase_35,pfam_Glyco_hydro_42_N,superfamily_Glycoside_hydrolase_SF,prints_Glycoside_Hdrlase_35	pfam_Glycoside_Hdrlase_35,pfam_Glyco_hydro_42_N,superfamily_Glycoside_hydrolase_SF,superfamily_Galactose-bd-like,prints_Glycoside_Hdrlase_35	-	no_errors	GLB1L3	HGNC	ENSG00000166105				23	0	0	25	10	28.5714
MRGPRX2	0	genome.wustl.edu	37	11	19077199	19077199	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	11	19077199	19077199	T	C	SNP	MRGPRX2	ENST00000329773	human	ensembl	74_37	-1	known	missense	c.751	p.K251E	0.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	-	no_errors	MRGPRX2	HGNC	ENSG00000183695				121	0	0	134	30	18.2927
WT1	0	genome.wustl.edu	37	11	32450131	32450131	+	Silent	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	11	32450131	32450131	G	A	SNP	WT1	ENST00000332351	human	ensembl	74_37	-1	known	silent	c.681	p.S227	1.000	pfam_Wilms_tumour_N	pfam_Wilms_tumour_N,pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2,prints_Wilms_tumour	-	no_errors	WT1	HGNC	ENSG00000184937				62	0	0	85	20	19.0476
MRGPRE	0	genome.wustl.edu	37	11	3249826	3249826	+	Silent	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	11	3249826	3249826	C	T	SNP	MRGPRE	ENST00000389832	human	ensembl	74_37	-1	known	silent	c.204	p.A68	0.086	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	-	no_errors	MRGPRE	HGNC	ENSG00000184350				118	0	0	194	12	5.82524
DEPDC7	0	genome.wustl.edu	37	11	33047274	33047274	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	11	33047274	33047274	C	T	SNP	DEPDC7	ENST00000241051	human	ensembl	74_37	+1	known	missense	c.143	p.T48I	0.994	smart_DEP_dom,pfscan_DEP_dom	pfam_DEP_dom,smart_DEP_dom,pfscan_DEP_dom	-	no_errors	DEPDC7	HGNC	ENSG00000121690				242	1	0.411523	234	58	19.863
HIPK3	0	genome.wustl.edu	37	11	33308378	33308378	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	11	33308378	33308378	G	A	SNP	HIPK3	ENST00000303296	human	ensembl	74_37	+1	known	missense	c.418	p.A140T	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	HIPK3	HGNC	ENSG00000110422				67	0	0	115	32	21.7687
ZNF195	0	genome.wustl.edu	37	11	3392215	3392215	+	Silent	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	11	3392215	3392215	G	A	SNP	ZNF195	ENST00000399602	human	ensembl	74_37	-1	known	silent	c.216	p.D72	0.000	pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF195	HGNC	ENSG00000005801				484	0	0	486	97	16.6381
PAMR1	0	genome.wustl.edu	37	11	35456181	35456181	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	11	35456181	35456181	G	A	SNP	PAMR1	ENST00000278360	human	ensembl	74_37	-1	known	missense	c.1556	p.A519V	1.000	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,prints_Peptidase_S1A,pfscan_Peptidase_S1	pfam_Peptidase_S1,pfam_CUB_dom,pfam_Sushi_SCR_CCP,pfam_EG-like_dom,superfamily_Trypsin-like_Pept_dom,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_EG-like_dom,smart_CUB_dom,smart_EGF-like_Ca-bd_dom,smart_Sushi_SCR_CCP,smart_Peptidase_S1,prints_Peptidase_S1A,pfscan_CUB_dom,pfscan_EG-like_dom,pfscan_Sushi_SCR_CCP,pfscan_Peptidase_S1	-	no_errors	PAMR1	HGNC	ENSG00000149090				94	0	0	154	45	22.6131
RAG1	0	genome.wustl.edu	37	11	36596082	36596082	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	11	36596082	36596082	C	T	SNP	RAG1	ENST00000299440	human	ensembl	74_37	+1	known	missense	c.1228	p.R410W	1.000	NULL	pfam_Znf_VDJ_recomb-activ_1,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RAG1	HGNC	ENSG00000166349				115	0	0	154	39	20.2073
LRRC4C	0	genome.wustl.edu	37	11	40137608	40137608	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	11	40137608	40137608	G	A	SNP	LRRC4C	ENST00000527150	human	ensembl	74_37	-1	known	missense	c.235	p.R79W	0.201	smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	-	no_errors	LRRC4C	HGNC	ENSG00000148948				113	0	0	128	19	12.9252
SYT13	0	genome.wustl.edu	37	11	45273978	45273978	+	Silent	SNP	T	T	G			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	11	45273978	45273978	T	G	SNP	SYT13	ENST00000020926	human	ensembl	74_37	-1	known	silent	c.840	p.S280	0.001	NULL	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	-	no_errors	SYT13	HGNC	ENSG00000019505				178	0	0	186	32	14.6789
PEX16	0	genome.wustl.edu	37	11	45935724	45935724	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	11	45935724	45935724	G	A	SNP	PEX16	ENST00000241041	human	ensembl	74_37	-1	known	missense	c.725	p.S242L	1.000	pfam_Pex16	pfam_Pex16	-	no_errors	PEX16	HGNC	ENSG00000121680				25	0	0	32	3	8.57143
C11orf49	0	genome.wustl.edu	37	11	47183174	47183174	+	Silent	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	11	47183174	47183174	C	T	SNP	C11orf49	ENST00000378615	human	ensembl	74_37	+1	known	silent	c.999	p.D333	0.021	NULL	NULL	-	no_errors	C11orf49	HGNC	ENSG00000149179				71	0	0	74	15	16.8539
ACP2	0	genome.wustl.edu	37	11	47267247	47267247	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	11	47267247	47267247	T	C	SNP	ACP2	ENST00000256997	human	ensembl	74_37	-1	known	missense	c.436	p.I146V	0.000	pfam_His_Pase_superF_clade-2	pfam_His_Pase_superF_clade-2	-	no_errors	ACP2	HGNC	ENSG00000134575				126	1	0.787402	131	28	17.6101
FNBP4	0	genome.wustl.edu	37	11	47765532	47765532	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	11	47765532	47765532	G	A	SNP	FNBP4	ENST00000263773	human	ensembl	74_37	-1	known	nonsense	c.1429	p.R477*	1.000	NULL	pfam_WW_dom,superfamily_WW_dom,smart_WW_dom,pfscan_WW_dom	-	no_errors	FNBP4	HGNC	ENSG00000109920				85	0	0	103	7	6.36364
OR5W2	0	genome.wustl.edu	37	11	55681565	55681565	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	11	55681565	55681565	C	A	SNP	OR5W2	ENST00000344514	human	ensembl	74_37	-1	known	missense	c.494	p.R165L	0.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR5W2	HGNC	ENSG00000187612				139	0	0	157	29	15.5914
C11orf35	0	genome.wustl.edu	37	11	558939	558939	+	Silent	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	11	558939	558939	G	A	SNP	C11orf35	ENST00000329451	human	ensembl	74_37	-1	known	silent	c.75	p.G25	0.000	NULL	pfam_Lamin_tail_dom	-	no_errors	C11orf35	HGNC	ENSG00000185522				58	0	0	66	15	18.5185
OR4D6	0	genome.wustl.edu	37	11	59224664	59224664	+	Silent	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	11	59224664	59224664	C	T	SNP	OR4D6	ENST00000300127	human	ensembl	74_37	+1	known	silent	c.231	p.T77	0.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4D6	HGNC	ENSG00000166884				159	0	0	184	60	24.5902
OR56A3	0	genome.wustl.edu	37	11	5969078	5969078	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	11	5969078	5969078	G	A	SNP	OR56A3	ENST00000329564	human	ensembl	74_37	+1	known	missense	c.502	p.A168T	0.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR56A3	HGNC	ENSG00000184478				148	0	0	152	45	22.8426
MS4A14	0	genome.wustl.edu	37	11	60183466	60183466	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	11	60183466	60183466	C	T	SNP	MS4A14	ENST00000300187	human	ensembl	74_37	+1	known	missense	c.1025	p.S342F	0.000	NULL	pfam_CD20-like	-	no_errors	MS4A14	HGNC	ENSG00000166928				63	0	0	80	14	14.8936
TMEM132A	0	genome.wustl.edu	37	11	60702844	60702844	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	11	60702844	60702844	C	T	SNP	TMEM132A	ENST00000005286	human	ensembl	74_37	+1	known	missense	c.1960	p.R654W	1.000	NULL	NULL	-	no_errors	TMEM132A	HGNC	ENSG00000006118				34	0	0	38	7	15.5556
CD5	0	genome.wustl.edu	37	11	60885784	60885784	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	11	60885784	60885784	T	C	SNP	CD5	ENST00000347785	human	ensembl	74_37	+1	known	missense	c.232	p.S78P	0.000	pfam_SRCR,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_SRCR,prints_SRCR	pfam_SRCR,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_SRCR,prints_Tcell_CD5,prints_SRCR	-	no_errors	CD5	HGNC	ENSG00000110448				267	1	0.373134	329	58	14.9871
PHRF1	0	genome.wustl.edu	37	11	609248	609248	+	Silent	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	11	609248	609248	C	T	SNP	PHRF1	ENST00000264555	human	ensembl	74_37	+1	known	silent	c.3792	p.S1264	0.000	NULL	pfam_Znf_PHD-finger,pfam_Znf_C3HC4_RING-type,superfamily_Znf_FYVE_PHD,smart_Znf_RING,smart_Znf_PHD,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	PHRF1	HGNC	ENSG00000070047				94	0	0	111	25	18.3824
DDB1	0	genome.wustl.edu	37	11	61094323	61094323	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	11	61094323	61094323	G	A	SNP	DDB1	ENST00000301764	human	ensembl	74_37	-1	known	nonsense	c.592	p.R198*	0.996	NULL	pfam_Cleavage/polyA-sp_fac_asu_C	-	no_errors	DDB1	HGNC	ENSG00000167986				255	0	0	367	75	16.9683
DAGLA	0	genome.wustl.edu	37	11	61504756	61504756	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	11	61504756	61504756	C	T	SNP	DAGLA	ENST00000257215	human	ensembl	74_37	+1	known	missense	c.1474	p.L492F	1.000	pfam_Lipase_3	pfam_Lipase_3	-	no_errors	DAGLA	HGNC	ENSG00000134780				478	0	0	557	88	13.6434
DAGLA	0	genome.wustl.edu	37	11	61511578	61511578	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	11	61511578	61511578	T	C	SNP	DAGLA	ENST00000257215	human	ensembl	74_37	+1	known	missense	c.2746	p.F916L	1.000	NULL	pfam_Lipase_3	-	no_errors	DAGLA	HGNC	ENSG00000134780				67	0	0	86	5	5.49451
AHNAK	0	genome.wustl.edu	37	11	62303536	62303536	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	11	62303536	62303536	A	G	SNP	AHNAK	ENST00000378024	human	ensembl	74_37	-1	known	missense	c.35	p.L12P	1.000	superfamily_PDZ,pfscan_PDZ	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK	HGNC	ENSG00000124942				84	0	0	116	16	12.1212
LRRN4CL	0	genome.wustl.edu	37	11	62455946	62455946	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	11	62455946	62455946	G	A	SNP	LRRN4CL	ENST00000317449	human	ensembl	74_37	-1	known	missense	c.35	p.A12V	0.229	NULL	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	LRRN4CL	HGNC	ENSG00000177363				25	0	0	35	15	30
HNRNPUL2	0	genome.wustl.edu	37	11	62483395	62483395	+	Silent	SNP	G	G	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	11	62483395	62483395	G	T	SNP	HNRNPUL2	ENST00000301785	human	ensembl	74_37	-1	known	silent	c.1996	p.R666	1.000	NULL	pfam_SPRY_rcpt,pfam_SAP_dom,pfam_Zeta_toxin_domain,pfam_Chromatin_KTI12,superfamily_ConA-like_lec_gl_sf,superfamily_P-loop_NTPase,smart_SAP_dom,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_SAP_dom	-	no_errors	HNRNPUL2	HGNC	ENSG00000214753				43	0	0	63	12	16
ZBTB3	0	genome.wustl.edu	37	11	62519939	62519939	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	11	62519939	62519939	G	A	SNP	ZBTB3	ENST00000394807	human	ensembl	74_37	-1	known	missense	c.1348	p.P450S	1.000	NULL	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB3	HGNC	ENSG00000185670				86	0	0	131	28	17.6101
MAP4K2	0	genome.wustl.edu	37	11	64566893	64566893	+	Silent	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	11	64566893	64566893	C	T	SNP	MAP4K2	ENST00000294066	human	ensembl	74_37	-1	known	silent	c.1053	p.P351	1.000	NULL	pfam_Prot_kinase_dom,pfam_Citron,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Citron,pfscan_Prot_kinase_dom	-	no_errors	MAP4K2	HGNC	ENSG00000168067				158	0	0	163	39	19.3069
TRIM3	0	genome.wustl.edu	37	11	6477741	6477741	+	Silent	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	11	6477741	6477741	G	A	SNP	TRIM3	ENST00000345851	human	ensembl	74_37	-1	known	silent	c.1215	p.Y405	0.991	pfam_Filamin/ABP280_repeat-like,superfamily_Ig_E-set,smart_Filamin,pfscan_Filamin/ABP280_repeat-like	pfam_NHL_repeat,pfam_Filamin/ABP280_repeat-like,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_Ig_E-set,smart_Znf_RING,smart_Znf_B-box,smart_Bbox_C,smart_Filamin,pfscan_Filamin/ABP280_repeat-like,pfscan_NHL_repeat_subgr,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM3	HGNC	ENSG00000110171				32	0	0	45	8	15.0943
SCYL1	0	genome.wustl.edu	37	11	65302744	65302744	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	11	65302744	65302744	T	C	SNP	SCYL1	ENST00000270176	human	ensembl	74_37	+1	known	missense	c.1277	p.V426A	1.000	superfamily_ARM-type_fold	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_ARM-type_fold,superfamily_Kinase-like_dom,pfscan_Prot_kinase_dom	-	no_errors	SCYL1	HGNC	ENSG00000142186				162	1	0.613497	186	41	18.0617
DNHD1	0	genome.wustl.edu	37	11	6532612	6532612	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	11	6532612	6532612	C	T	SNP	DNHD1	ENST00000254579	human	ensembl	74_37	+1	known	missense	c.1345	p.R449W	0.001	NULL	pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom,superfamily_P-loop_NTPase,superfamily_t-SNARE	-	no_errors	DNHD1	HGNC	ENSG00000179532				137	0	0	183	40	17.9372
GAL3ST3	0	genome.wustl.edu	37	11	65810683	65810683	+	Silent	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	11	65810683	65810683	G	A	SNP	GAL3ST3	ENST00000312006	human	ensembl	74_37	-1	known	silent	c.591	p.F197	1.000	pfam_Gal-3-0_sulfotransfrase,superfamily_P-loop_NTPase	pfam_Gal-3-0_sulfotransfrase,superfamily_P-loop_NTPase	-	no_errors	GAL3ST3	HGNC	ENSG00000175229				102	1	0.970874	124	25	16.7785
CD248	0	genome.wustl.edu	37	11	66084469	66084469	+	Silent	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	11	66084469	66084469	C	T	SNP	CD248	ENST00000311330	human	ensembl	74_37	-1	known	silent	c.30	p.A10	0.980	NULL	pfam_C-type_lectin,pfam_EGF-like_Ca-bd_dom,superfamily_C-type_lectin_fold,smart_C-type_lectin,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_C-type_lectin	-	no_errors	CD248	HGNC	ENSG00000174807				11	0	0	6	3	33.3333
SPTBN2	0	genome.wustl.edu	37	11	66466195	66466195	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	11	66466195	66466195	C	T	SNP	SPTBN2	ENST00000309996	human	ensembl	74_37	-1	known	missense	c.3929	p.R1310H	1.000	pirsf_Spectrin_bsu,pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pirsf_Spectrin_bsu,pfam_Spectrin_repeat,pfam_CH-domain,pfam_Pleckstrin_homology,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Pleckstrin_homology,prints_PH_dom-spectrin-type,pfscan_CH-domain,pfscan_Pleckstrin_homology	-	no_errors	SPTBN2	HGNC	ENSG00000173898				99	0	0	155	22	12.4294
PPP6R3	0	genome.wustl.edu	37	11	68341618	68341618	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	11	68341618	68341618	C	T	SNP	PPP6R3	ENST00000393799	human	ensembl	74_37	+1	known	missense	c.1385	p.T462M	1.000	pfam_SAPS	pfam_SAPS,superfamily_ARM-type_fold	-	no_errors	PPP6R3	HGNC	ENSG00000110075				133	0	0	134	26	16.25
CPT1A	0	genome.wustl.edu	37	11	68574954	68574954	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	11	68574954	68574954	C	T	SNP	CPT1A	ENST00000265641	human	ensembl	74_37	-1	known	missense	c.434	p.R145H	0.548	NULL	pfam_Carn_acyl_trans	-	no_errors	CPT1A	HGNC	ENSG00000110090				38	0	0	53	9	14.5161
NADSYN1	0	genome.wustl.edu	37	11	71174487	71174487	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	11	71174487	71174487	G	A	SNP	NADSYN1	ENST00000319023	human	ensembl	74_37	+1	known	missense	c.273	p.M91I	1.000	pfam_C-N_Hydrolase,superfamily_C-N_Hydrolase,pirsf_Gln-dep_NAD_synthase,pfscan_C-N_Hydrolase	pfam_C-N_Hydrolase,pfam_NAD/GMP_synthase,superfamily_C-N_Hydrolase,pirsf_Gln-dep_NAD_synthase,pfscan_C-N_Hydrolase,tigrfam_NAD_synthase	-	no_errors	NADSYN1	HGNC	ENSG00000172890				40	0	0	66	13	16.4557
FOLR3	0	genome.wustl.edu	37	11	71850856	71850856	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	11	71850856	71850856	G	A	SNP	FOLR3	ENST00000456237	human	ensembl	74_37	+1	known	missense	c.845	p.R282H	0.001	NULL	pfam_Folate_rcpt-like	-	no_errors	FOLR3	HGNC	ENSG00000110203				49	0	0	49	14	22.2222
CLPB	0	genome.wustl.edu	37	11	72083976	72083976	+	Silent	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	11	72083976	72083976	G	A	SNP	CLPB	ENST00000294053	human	ensembl	74_37	-1	known	silent	c.729	p.P243	0.870	superfamily_Ankyrin_rpt-contain_dom,pfscan_Ankyrin_rpt-contain_dom	pfam_ATPase_AAA-2,pfam_Ankyrin_rpt,pfam_Clp_ATPase_C,pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA_core,pfam_Zeta_toxin_domain,pfam_Sigma_54_int,superfamily_P-loop_NTPase,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_AAA+_ATPase,prints_ClpA/B,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	CLPB	HGNC	ENSG00000162129				124	0	0	166	49	22.7907
RELT	0	genome.wustl.edu	37	11	73105600	73105600	+	Silent	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	11	73105600	73105600	G	A	SNP	RELT	ENST00000064780	human	ensembl	74_37	+1	known	silent	c.867	p.S289	0.075	prints_TNFR_19-like	pfam_TNF_rcpt_RELT,prints_TNFR_19-like	-	no_errors	RELT	HGNC	ENSG00000054967				125	0	0	184	32	14.8148
UVRAG	0	genome.wustl.edu	37	11	75852356	75852356	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	11	75852356	75852356	G	A	SNP	UVRAG	ENST00000356136	human	ensembl	74_37	+1	known	missense	c.1999	p.E667K	1.000	NULL	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom	-	no_errors	UVRAG	HGNC	ENSG00000198382				84	0	0	95	23	19.4915
TENM4	0	genome.wustl.edu	37	11	78381155	78381155	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	11	78381155	78381155	C	T	SNP	TENM4	ENST00000278550	human	ensembl	74_37	-1	known	missense	c.6235	p.A2079T	1.000	NULL	pfam_Ten_N,pfam_EGF_extracell,pfam_YD,superfamily_CarboxyPept-like_regulatory,smart_EG-like_dom,pfscan_EG-like_dom,tigrfam_YD,tigrfam_Rhs_assc_core	-	no_errors	TENM4	HGNC	ENSG00000149256				48	0	0	72	10	12.1951
TUB	0	genome.wustl.edu	37	11	8122081	8122081	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	11	8122081	8122081	G	A	SNP	TUB	ENST00000305253	human	ensembl	74_37	+1	known	missense	c.1313	p.R438Q	1.000	pfam_Tubby_C,superfamily_Tubby_C-like,prints_Tubby_C	pfam_Tubby_C,superfamily_Tubby_C-like,prints_Tubby_N,prints_Tubby_C	-	no_errors	TUB	HGNC	ENSG00000166402				49	0	0	64	23	26.4368
TUB	0	genome.wustl.edu	37	11	8123105	8123105	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	11	8123105	8123105	G	A	SNP	TUB	ENST00000305253	human	ensembl	74_37	+1	known	missense	c.1625	p.C542Y	1.000	pfam_Tubby_C,superfamily_Tubby_C-like,prints_Tubby_C	pfam_Tubby_C,superfamily_Tubby_C-like,prints_Tubby_N,prints_Tubby_C	-	no_errors	TUB	HGNC	ENSG00000166402				115	0	0	143	35	19.6629
SYTL2	0	genome.wustl.edu	37	11	85418474	85418474	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	11	85418474	85418474	G	A	SNP	SYTL2	ENST00000359152	human	ensembl	74_37	-1	known	missense	c.4639	p.R1547W	1.000	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	-	no_errors	SYTL2	HGNC	ENSG00000137501				137	0	0	147	37	20.1087
NRIP3	0	genome.wustl.edu	37	11	9007341	9007341	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	11	9007341	9007341	C	T	SNP	NRIP3	ENST00000309166	human	ensembl	74_37	-1	known	missense	c.479	p.R160Q	1.000	pfam_Peptidase_aspartic_DDI1-type,superfamily_Peptidase_aspartic_dom	pfam_Peptidase_aspartic_DDI1-type,superfamily_Peptidase_aspartic_dom	-	no_errors	NRIP3	HGNC	ENSG00000175352				241	0	0	257	41	13.7584
FAM76B	0	genome.wustl.edu	37	11	95516236	95516236	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	11	95516236	95516236	G	A	SNP	FAM76B	ENST00000358780	human	ensembl	74_37	-1	known	missense	c.556	p.H186Y	1.000	NULL	NULL	-	no_errors	FAM76B	HGNC	ENSG00000077458				56	0	0	56	14	20
AP2A2	0	genome.wustl.edu	37	11	993321	993321	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	11	993321	993321	A	G	SNP	AP2A2	ENST00000332231	human	ensembl	74_37	+1	known	missense	c.1493	p.K498R	1.000	pfam_Clathrin/coatomer_adapt-like_N,superfamily_ARM-type_fold,pirsf_AP2_complex_asu	pfam_Clathrin/coatomer_adapt-like_N,pfam_Clathrin_a-adaptin_app_sub_C,pfam_Clathrin_a/b/g-adaptin_app_Ig,superfamily_ARM-type_fold,superfamily_Coatomer/calthrin_app_sub_C,superfamily_Coatomer/clathrin_app_Ig-like,smart_Clathrin_a/b/g-adaptin_app_Ig,pirsf_AP2_complex_asu	-	no_errors	AP2A2	HGNC	ENSG00000183020				27	0	0	46	8	14.8148
SLC17A8	0	genome.wustl.edu	37	12	100774527	100774527	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	12	100774527	100774527	A	T	SNP	SLC17A8	ENST00000323346	human	ensembl	74_37	+1	known	missense	c.150	p.E50D	0.945	superfamily_MFS_dom_general_subst_transpt	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC17A8	HGNC	ENSG00000179520				244	0	0	228	124	35.2273
ALDH1L2	0	genome.wustl.edu	37	12	105467707	105467707	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	12	105467707	105467707	C	T	SNP	ALDH1L2	ENST00000258494	human	ensembl	74_37	-1	known	missense	c.125	p.R42H	0.999	pfam_Formyl_transf_N,superfamily_Formyl_transf_N,pirsf_10_FTHF_DH	pfam_Aldehyde_DH_dom,pfam_Formyl_transf_N,pfam_Formyl_trans_C,pfam_Acyl_carrier_prot-like,superfamily_Ald_DH/histidinol_DH,superfamily_Formyl_transf_N,superfamily_Formyl_transferase_C-like,superfamily_Acyl_carrier_prot-like,pirsf_10_FTHF_DH,pfscan_Acyl_carrier_prot-like	-	no_errors	ALDH1L2	HGNC	ENSG00000136010				180	0	0	140	85	37.7778
FAM109A	0	genome.wustl.edu	37	12	111801241	111801241	+	Silent	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	12	111801241	111801241	C	T	SNP	FAM109A	ENST00000361483	human	ensembl	74_37	-1	known	silent	c.30	p.A10	0.001	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	FAM109A	HGNC	ENSG00000198324				30	0	0	24	14	36.8421
HECTD4	0	genome.wustl.edu	37	12	112622701	112622701	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	12	112622701	112622701	C	T	SNP	HECTD4	ENST00000377560	human	ensembl	74_37	-1	known	missense	c.9553	p.A3185T	0.964	NULL	pfam_HECT,superfamily_HECT,superfamily_ConA-like_lec_gl_sf,smart_HECT,pfscan_HECT	-	no_errors	HECTD4	HGNC	ENSG00000173064				67	0	0	52	34	39.5349
TBX5	0	genome.wustl.edu	37	12	114804092	114804092	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	12	114804092	114804092	A	G	SNP	TBX5	ENST00000310346	human	ensembl	74_37	-1	known	missense	c.860	p.L287S	1.000	NULL	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box,prints_TF_T-box	-	no_errors	TBX5	HGNC	ENSG00000089225				164	0	0	112	78	41.0526
CCDC64	0	genome.wustl.edu	37	12	120530903	120530903	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	12	120530903	120530903	C	T	SNP	CCDC64	ENST00000257583	human	ensembl	74_37	+1	known	missense	c.751	p.R251W	0.982	NULL	NULL	-	no_errors	CCDC64	HGNC	ENSG00000135127				54	0	0	61	21	25.6098
ABCB9	0	genome.wustl.edu	37	12	123444274	123444274	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	12	123444274	123444274	G	T	SNP	ABCB9	ENST00000442028	human	ensembl	74_37	-1	known	missense	c.509	p.S170Y	0.988	superfamily_ABC1_TM_dom	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC1_TM_dom,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom	-	no_errors	ABCB9	HGNC	ENSG00000150967				89	0	0	62	34	35.4167
RIMBP2	0	genome.wustl.edu	37	12	130898786	130898786	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	12	130898786	130898786	C	T	SNP	RIMBP2	ENST00000261655	human	ensembl	74_37	-1	known	missense	c.2536	p.E846K	0.998	superfamily_SH3_domain	pfam_SH3_2,pfam_SH3_domain,superfamily_SH3_domain,superfamily_Fibronectin_type3,smart_SH3_domain,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_SH3_domain,prints_SH3_domain	-	no_errors	RIMBP2	HGNC	ENSG00000060709				117	0	0	94	66	41.25
SFSWAP	0	genome.wustl.edu	37	12	132237851	132237851	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	12	132237851	132237851	C	T	SNP	SFSWAP	ENST00000261674	human	ensembl	74_37	+1	known	missense	c.1265	p.P422L	0.986	NULL	pfam_SWAP_N_domain,pfam_Surp,superfamily_Surp,smart_Surp,pfscan_Surp	-	no_errors	SFSWAP	HGNC	ENSG00000061936				87	0	0	98	25	20.3252
ANKLE2	0	genome.wustl.edu	37	12	133304630	133304630	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	12	133304630	133304630	G	A	SNP	ANKLE2	ENST00000357997	human	ensembl	74_37	-1	known	missense	c.2603	p.S868L	0.006	NULL	pfam_LEM_dom,superfamily_LEM/LEM-like_dom,superfamily_Ankyrin_rpt-contain_dom,superfamily_Ribosomal_L9/RNase_H1_N,pfscan_LEM_dom	-	no_errors	ANKLE2	HGNC	ENSG00000176915				316	1	0.315457	358	105	22.6782
PTPRO	0	genome.wustl.edu	37	12	15637007	15637007	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	12	15637007	15637007	A	G	SNP	PTPRO	ENST00000281171	human	ensembl	74_37	+1	known	missense	c.175	p.K59E	1.000	superfamily_Fibronectin_type3	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRO	HGNC	ENSG00000151490				100	0	0	109	29	21.0145
AEBP2	0	genome.wustl.edu	37	12	19615474	19615474	+	Silent	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	12	19615474	19615474	C	T	SNP	AEBP2	ENST00000398864	human	ensembl	74_37	+1	known	silent	c.702	p.S234	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	AEBP2	HGNC	ENSG00000139154				21	0	0	31	8	20.5128
SLCO1B7	0	genome.wustl.edu	37	12	21201653	21201653	+	Silent	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	12	21201653	21201653	C	T	SNP	SLCO1B7	ENST00000554957	human	ensembl	74_37	+1	known	silent	c.1143	p.L381	0.000	pfam_OA_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_OA_transporter	pfam_OA_transporter,pfam_MFS,pfam_Kazal_dom,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_OA_transporter	-	no_errors	SLCO1B7	HGNC	ENSG00000205754				9	0	0	12	3	20
CACNA1C	0	genome.wustl.edu	37	12	2800256	2800256	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	12	2800256	2800256	C	T	SNP	CACNA1C	ENST00000399634	human	ensembl	74_37	+1	known	missense	c.6521	p.A2174V	0.991	NULL	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCC_L_a1csu,prints_VDCCAlpha1,prints_VDCC_L_a1su	-	no_errors	CACNA1C	HGNC	ENSG00000151067				27	0	0	33	8	19.5122
ITFG2	0	genome.wustl.edu	37	12	2929276	2929276	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	12	2929276	2929276	T	C	SNP	ITFG2	ENST00000228799	human	ensembl	74_37	+1	known	missense	c.431	p.V144A	1.000	superfamily_WD40_repeat_dom	pfam_FG-GAP,superfamily_WD40_repeat_dom	-	no_errors	ITFG2	HGNC	ENSG00000111203				65	0	0	100	19	15.9664
PRMT8	0	genome.wustl.edu	37	12	3678673	3678673	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	12	3678673	3678673	G	A	SNP	PRMT8	ENST00000382622	human	ensembl	74_37	+1	known	missense	c.655	p.A219T	1.000	pfam_Arg_MeTrfase	pfam_Ribosomal-L11_MeTrfase_PrmA,pfam_Arg_MeTrfase,pfam_Methyltransf_11,pfam_tRNA_Trfase_Trm5/Tyw2	-	no_errors	PRMT8	HGNC	ENSG00000111218				126	0	0	128	30	18.9873
PARP11	0	genome.wustl.edu	37	12	3921503	3921503	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	12	3921503	3921503	C	T	SNP	PARP11	ENST00000228820	human	ensembl	74_37	-1	known	missense	c.803	p.R268Q	1.000	pfam_Poly(ADP-ribose)pol_cat_dom,pfscan_Poly(ADP-ribose)pol_cat_dom	pfam_Poly(ADP-ribose)pol_cat_dom,pfam_WWE-dom,pfscan_WWE-dom,pfscan_Poly(ADP-ribose)pol_cat_dom	-	no_errors	PARP11	HGNC	ENSG00000111224				116	1	0.854701	126	16	11.2676
DBX2	0	genome.wustl.edu	37	12	45444539	45444539	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	12	45444539	45444539	C	T	SNP	DBX2	ENST00000332700	human	ensembl	74_37	-1	known	missense	c.172	p.A58T	0.002	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_HTH_motif,prints_Homeobox_metazoa	-	no_errors	DBX2	HGNC	ENSG00000185610				10	0	0	3	5	62.5
ARID2	0	genome.wustl.edu	37	12	46211654	46211654	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	12	46211654	46211654	C	T	SNP	ARID2	ENST00000334344	human	ensembl	74_37	+1	known	missense	c.620	p.A207V	1.000	NULL	pfam_ARID/BRIGHT_DNA-bd,pfam_DNA-bd_RFX,superfamily_ARID/BRIGHT_DNA-bd,superfamily_ARM-type_fold,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID2	HGNC	ENSG00000189079				53	0	0	57	11	16.1765
ARID2	0	genome.wustl.edu	37	12	46230382	46230382	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	12	46230382	46230382	A	T	SNP	ARID2	ENST00000334344	human	ensembl	74_37	+1	known	missense	c.716	p.D239V	1.000	NULL	pfam_ARID/BRIGHT_DNA-bd,pfam_DNA-bd_RFX,superfamily_ARID/BRIGHT_DNA-bd,superfamily_ARM-type_fold,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID2	HGNC	ENSG00000189079				46	0	0	37	14	27.451
COL2A1	0	genome.wustl.edu	37	12	48367966	48367966	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	12	48367966	48367966	T	C	SNP	COL2A1	ENST00000380518	human	ensembl	74_37	-1	known	missense	c.4223	p.K1408R	1.000	pfam_Fib_collagen_C,smart_Fib_collagen_C	pfam_Collagen,pfam_Fib_collagen_C,pfam_VWF_C,superfamily_Fibrinogen_a/b/g_C_dom,smart_VWF_C,smart_Fib_collagen_C,pfscan_VWF_C	-	no_errors	COL2A1	HGNC	ENSG00000139219				111	0	0	115	27	19.0141
KMT2D	0	genome.wustl.edu	37	12	49433849	49433849	+	Silent	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	12	49433849	49433849	G	A	SNP	KMT2D	ENST00000301067	human	ensembl	74_37	-1	known	silent	c.7704	p.P2568	0.037	NULL	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_box_dom,smart_Znf_PHD,smart_Znf_RING,smart_HMG_box_dom,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	KMT2D	HGNC	ENSG00000167548				39	0	0	51	6	10.5263
SPATS2	0	genome.wustl.edu	37	12	49908349	49908349	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	12	49908349	49908349	G	T	SNP	SPATS2	ENST00000321898	human	ensembl	74_37	+1	known	missense	c.851	p.R284L	1.000	pfam_DUF1387	pfam_DUF1387,superfamily_UBA-like	-	no_errors	SPATS2	HGNC	ENSG00000123352				36	0	0	31	4	11.4286
SPATS2	0	genome.wustl.edu	37	12	49918545	49918545	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	12	49918545	49918545	G	A	SNP	SPATS2	ENST00000321898	human	ensembl	74_37	+1	known	missense	c.1192	p.A398T	0.128	NULL	pfam_DUF1387,superfamily_UBA-like	-	no_errors	SPATS2	HGNC	ENSG00000123352				205	0	0	229	53	18.7943
FMNL3	0	genome.wustl.edu	37	12	50041505	50041505	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	12	50041505	50041505	C	T	SNP	FMNL3	ENST00000293590	human	ensembl	74_37	-1	known	missense	c.2759	p.R920Q	0.995	pfam_FH2_Formin,smart_FH2_Formin	pfam_FH2_Formin,pfam_FH3_dom,pfam_GTPase-bd,superfamily_ARM-type_fold,smart_FH2_Formin	-	no_errors	FMNL3	HGNC	ENSG00000161791				108	0	0	96	23	19.3277
KCNA5	0	genome.wustl.edu	37	12	5153999	5153999	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	12	5153999	5153999	G	A	SNP	KCNA5	ENST00000252321	human	ensembl	74_37	+1	known	missense	c.686	p.R229H	0.990	NULL	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,pfam_PKD1_2_channel,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv1.5,prints_K_chnl_volt-dep_Kv1,prints_K_chnl_volt-dep_Kv	-	no_errors	KCNA5	HGNC	ENSG00000130037				169	0	0	209	49	18.9922
NR4A1	0	genome.wustl.edu	37	12	52448715	52448715	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	12	52448715	52448715	C	A	SNP	NR4A1	ENST00000545748	human	ensembl	74_37	+1	known	missense	c.765	p.S255R	0.999	prints_Nuc_orp_HMR_rcpt	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Nuc_orph_rcpt,prints_Nuc_orp_HMR_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt	-	no_errors	NR4A1	HGNC	ENSG00000123358				278	0	0	238	133	35.8491
KRT77	0	genome.wustl.edu	37	12	53091532	53091532	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	12	53091532	53091532	G	A	SNP	KRT77	ENST00000341809	human	ensembl	74_37	-1	known	missense	c.692	p.A231V	0.000	pfam_IF	pfam_IF,superfamily_Prefoldin,prints_Keratin_II	-	no_errors	KRT77	HGNC	ENSG00000189182				597	1	0.167224	485	335	40.8537
KRT3	0	genome.wustl.edu	37	12	53189685	53189685	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	12	53189685	53189685	C	T	SNP	KRT3	ENST00000309505	human	ensembl	74_37	-1	known	missense	c.142	p.G48R	0.776	NULL	pfam_IF,superfamily_Prefoldin,prints_Keratin_II,prints_Keratin_I	-	no_errors	KRT3	HGNC	ENSG00000186442				90	0	0	94	53	36.0544
TENC1	0	genome.wustl.edu	37	12	53457026	53457026	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	12	53457026	53457026	C	T	SNP	TENC1	ENST00000314276	human	ensembl	74_37	+1	known	missense	c.4007	p.T1336M	0.999	pfam_PTB,smart_PTB/PI_dom	pfam_PTB,pfam_Tensin_phosphatase_C2-dom,pfam_SH2,superfamily_C2_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_SH2,smart_PTB/PI_dom,pfscan_SH2,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	TENC1	HGNC	ENSG00000111077				111	0	0	130	23	15.0327
ERBB3	0	genome.wustl.edu	37	12	56478927	56478927	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	12	56478927	56478927	G	A	SNP	ERBB3	ENST00000267101	human	ensembl	74_37	+1	known	missense	c.383	p.S128N	0.989	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_EGF_rcpt_L	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Furin-like_Cys-rich_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt_N_dom,smart_Furin_repeat,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	ERBB3	HGNC	ENSG00000065361				217	0	0	173	108	38.4342
ERBB3	0	genome.wustl.edu	37	12	56492521	56492521	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	12	56492521	56492521	A	G	SNP	ERBB3	ENST00000549832	human	ensembl	74_37	+1	putative	missense	c.31	p.S11G	0.000	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	ERBB3	HGNC	ENSG00000065361				144	0	0	178	36	16.8224
PA2G4	0	genome.wustl.edu	37	12	56505000	56505000	+	Silent	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	12	56505000	56505000	G	A	SNP	PA2G4	ENST00000303305	human	ensembl	74_37	+1	known	silent	c.972	p.L324	0.998	superfamily_Pept_M24_structural-domain,tigrfam_Pap_1	pfam_Pept_M24_structural-domain,superfamily_Pept_M24_structural-domain,tigrfam_Pap_1	-	no_errors	PA2G4	HGNC	ENSG00000170515				116	0	0	88	54	38.0282
PAN2	0	genome.wustl.edu	37	12	56721843	56721843	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	12	56721843	56721843	G	A	SNP	PAN2	ENST00000425394	human	ensembl	74_37	-1	known	missense	c.587	p.T196M	0.047	superfamily_WD40_repeat_dom	pfam_Exonuclease_RNaseT/DNA_pol3,pfam_Peptidase_C19/C67,superfamily_RNaseH-like_dom,superfamily_WD40_repeat_dom,smart_Exonuclease,pfscan_Peptidase_C19/C67	-	no_errors	PAN2	HGNC	ENSG00000135473				81	0	0	52	23	30.6667
BAZ2A	0	genome.wustl.edu	37	12	56995599	56995599	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	12	56995599	56995599	G	T	SNP	BAZ2A	ENST00000551812	human	ensembl	74_37	-1	known	missense	c.3808	p.L1270M	1.000	NULL	pfam_Bromodomain,pfam_Methyl_CpG_DNA-bd,pfam_DDT_dom,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_DNA-bd_dom,superfamily_Znf_FYVE_PHD,smart_Methyl_CpG_DNA-bd,smart_AT_hook_DNA-bd_motif,smart_DDT_dom_subgr,smart_Znf_PHD,smart_Bromodomain,pfscan_Methyl_CpG_DNA-bd,pfscan_Znf_PHD-finger,pfscan_DDT_dom_superfamily,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BAZ2A	HGNC	ENSG00000076108				141	0	0	172	15	8.02139
R3HDM2	0	genome.wustl.edu	37	12	57663593	57663593	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	12	57663593	57663593	T	C	SNP	R3HDM2	ENST00000347140	human	ensembl	74_37	-1	known	missense	c.1487	p.H496R	1.000	NULL	pfam_R3H_ss-bd,smart_R3H_ss-bd,pfscan_R3H_ss-bd	-	no_errors	R3HDM2	HGNC	ENSG00000179912				77	0	0	94	22	18.9655
TMEM5	0	genome.wustl.edu	37	12	64196138	64196138	+	Silent	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	12	64196138	64196138	C	T	SNP	TMEM5	ENST00000261234	human	ensembl	74_37	+1	known	silent	c.696	p.P232	0.487	NULL	pfam_Exostosin	-	no_errors	TMEM5	HGNC	ENSG00000118600				122	1	0.813008	140	32	18.6047
ZNF384	0	genome.wustl.edu	37	12	6776956	6776956	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	12	6776956	6776956	G	A	SNP	ZNF384	ENST00000361959	human	ensembl	74_37	-1	known	missense	c.1658	p.T553M	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF384	HGNC	ENSG00000126746				288	0	0	318	81	20.3008
CPSF6	0	genome.wustl.edu	37	12	69656202	69656202	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	12	69656202	69656202	C	T	SNP	CPSF6	ENST00000266679	human	ensembl	74_37	+1	known	nonsense	c.1630	p.R544*	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	CPSF6	HGNC	ENSG00000111605				115	0	0	103	36	25.8993
ACSM4	0	genome.wustl.edu	37	12	7463150	7463150	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	12	7463150	7463150	C	T	SNP	ACSM4	ENST00000399422	human	ensembl	74_37	+1	novel	missense	c.428	p.P143L	0.992	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig	-	no_errors	ACSM4	HGNC	ENSG00000215009				14	0	0	13	4	23.5294
LRRIQ1	0	genome.wustl.edu	37	12	85546106	85546106	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	12	85546106	85546106	T	A	SNP	LRRIQ1	ENST00000393217	human	ensembl	74_37	+1	known	missense	c.4378	p.S1460T	1.000	NULL	pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,smart_IQ_motif_EF-hand-BS,smart_Leu-rich_rpt_typical-subtyp,pfscan_IQ_motif_EF-hand-BS	-	no_errors	LRRIQ1	HGNC	ENSG00000133640				113	0	0	93	52	35.8621
TMCC3	0	genome.wustl.edu	37	12	94976112	94976112	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	12	94976112	94976112	G	T	SNP	TMCC3	ENST00000261226	human	ensembl	74_37	-1	known	missense	c.281	p.A94E	1.000	pfam_Predicted_TM_coiled-coil_2	pfam_Predicted_TM_coiled-coil_2	-	no_errors	TMCC3	HGNC	ENSG00000057704				231	0	0	213	117	35.4545
CLEC2D	0	genome.wustl.edu	37	12	9847427	9847427	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	12	9847427	9847427	C	T	SNP	CLEC2D	ENST00000290855	human	ensembl	74_37	+1	known	missense	c.533	p.T178I	0.177	superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	pfam_C-type_lectin,pfam_Herpes_UL45-like,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	-	no_errors	CLEC2D	HGNC	ENSG00000069493				77	0	0	78	16	17.0213
TPP2	0	genome.wustl.edu	37	13	103289546	103289546	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	13	103289546	103289546	G	A	SNP	TPP2	ENST00000376065	human	ensembl	74_37	+1	known	missense	c.1793	p.R598H	1.000	NULL	pfam_Peptidase_S8/S53_dom,pfam_Peptidase_S8A_TPPII,superfamily_Peptidase_S8/S53_dom,prints_Peptidase_S8_subtilisin-rel	-	no_errors	TPP2	HGNC	ENSG00000134900				79	0	0	96	20	17.2414
FAM155A	0	genome.wustl.edu	37	13	108518636	108518636	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	13	108518636	108518636	C	G	SNP	FAM155A	ENST00000375915	human	ensembl	74_37	-1	known	missense	c.309	p.W103C	1.000	NULL	NULL	-	no_errors	FAM155A	HGNC	ENSG00000204442				19	0	0	37	8	17.7778
MCF2L	0	genome.wustl.edu	37	13	113699074	113699074	+	Silent	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	13	113699074	113699074	G	A	SNP	MCF2L	ENST00000397021	human	ensembl	74_37	+1	putative	silent	c.36	p.P12	0.000	NULL	NULL	-	no_errors	MCF2L	HGNC	ENSG00000126217				37	0	0	47	11	18.9655
F10	0	genome.wustl.edu	37	13	113793678	113793678	+	Silent	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	13	113793678	113793678	C	T	SNP	F10	ENST00000375559	human	ensembl	74_37	+1	known	silent	c.264	p.D88	1.000	pirsf_Pept_S1A_FX,superfamily_GLA_domain,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom	pirsf_Pept_S1A_FX,pfam_Peptidase_S1,pfam_GLA_domain,pfam_EG-like_dom,superfamily_Trypsin-like_Pept_dom,superfamily_GLA_domain,smart_GLA_domain,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_Peptidase_S1,prints_Peptidase_S1A,prints_GLA_domain,pfscan_EG-like_dom,pfscan_GLA_domain,pfscan_Peptidase_S1	-	no_errors	F10	HGNC	ENSG00000126218				52	0	0	56	15	21.1268
TFDP1	0	genome.wustl.edu	37	13	114292018	114292018	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	13	114292018	114292018	C	T	SNP	TFDP1	ENST00000544902	human	ensembl	74_37	+1	known	missense	c.805	p.R269W	0.000	pirsf_Transcrpt_fac_DP	pfam_Transc_factor_DP_C,pfam_E2F_TDP,pirsf_Transcrpt_fac_DP	-	no_errors	TFDP1	HGNC	ENSG00000198176				11	0	0	24	7	22.5806
GAS6	0	genome.wustl.edu	37	13	114525103	114525103	+	Silent	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	13	114525103	114525103	G	A	SNP	GAS6	ENST00000357389	human	ensembl	74_37	-1	known	silent	c.1839	p.C613	0.979	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,pfam_EGF-like_Ca-bd_dom,pfam_GLA_domain,superfamily_ConA-like_lec_gl_sf,superfamily_GLA_domain,smart_GLA_domain,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_Laminin_G,pfscan_EG-like_dom,pfscan_GLA_domain,pfscan_Laminin_G,prints_GLA_domain	-	no_errors	GAS6	HGNC	ENSG00000183087				19	0	0	18	3	14.2857
TNFRSF19	0	genome.wustl.edu	37	13	24234605	24234605	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	13	24234605	24234605	C	T	SNP	TNFRSF19	ENST00000382258	human	ensembl	74_37	+1	known	missense	c.712	p.R238C	0.896	NULL	smart_TNFR/NGFR_Cys_rich_reg,pfscan_TNFR/NGFR_Cys_rich_reg,prints_TNFR_19	-	no_errors	TNFRSF19	HGNC	ENSG00000127863				54	0	0	46	21	31.3433
CENPJ	0	genome.wustl.edu	37	13	25487066	25487066	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	13	25487066	25487066	C	T	SNP	CENPJ	ENST00000381884	human	ensembl	74_37	-1	known	missense	c.98	p.R33H	1.000	NULL	pfam_Tcp10_C_dom	-	no_errors	CENPJ	HGNC	ENSG00000151849				94	0	0	119	32	21.1921
SHISA2	0	genome.wustl.edu	37	13	26621193	26621193	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	13	26621193	26621193	C	T	SNP	SHISA2	ENST00000319420	human	ensembl	74_37	-1	known	missense	c.346	p.V116M	1.000	NULL	NULL	-	no_errors	SHISA2	HGNC	ENSG00000180730				46	0	0	73	13	15.1163
MTUS2	0	genome.wustl.edu	37	13	29599208	29599208	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	13	29599208	29599208	C	T	SNP	MTUS2	ENST00000431530	human	ensembl	74_37	+1	known	missense	c.403	p.R135W	0.000	NULL	NULL	-	no_errors	MTUS2	HGNC	ENSG00000132938				121	0	0	166	21	11.2299
FRY	0	genome.wustl.edu	37	13	32792901	32792901	+	Silent	SNP	C	C	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	13	32792901	32792901	C	A	SNP	FRY	ENST00000380250	human	ensembl	74_37	+1	known	silent	c.4698	p.I1566	1.000	NULL	superfamily_ARM-type_fold	-	no_errors	FRY	HGNC	ENSG00000073910				47	0	0	68	11	13.9241
PDS5B	0	genome.wustl.edu	37	13	33344618	33344618	+	Silent	SNP	A	A	G			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	13	33344618	33344618	A	G	SNP	PDS5B	ENST00000315596	human	ensembl	74_37	+1	known	silent	c.3984	p.E1328	0.058	NULL	superfamily_ARM-type_fold	-	no_errors	PDS5B	HGNC	ENSG00000083642				45	0	0	74	15	16.8539
KL	0	genome.wustl.edu	37	13	33590992	33590992	+	Silent	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	13	33590992	33590992	G	A	SNP	KL	ENST00000380099	human	ensembl	74_37	+1	known	silent	c.414	p.A138	1.000	pfam_Glyco_hydro_1,superfamily_Glycoside_hydrolase_SF	pfam_Glyco_hydro_1,superfamily_Glycoside_hydrolase_SF,prints_Glyco_hydro_1	-	no_errors	KL	HGNC	ENSG00000133116				32	0	0	40	12	23.0769
SERTM1	0	genome.wustl.edu	37	13	37269458	37269458	+	Silent	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	13	37269458	37269458	C	T	SNP	SERTM1	ENST00000315190	human	ensembl	74_37	+1	known	silent	c.243	p.S81	0.953	NULL	NULL	-	no_errors	SERTM1	HGNC	ENSG00000180440				183	0	0	217	56	20.5128
FNDC3A	0	genome.wustl.edu	37	13	49705293	49705293	+	Silent	SNP	T	T	C			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	13	49705293	49705293	T	C	SNP	FNDC3A	ENST00000492622	human	ensembl	74_37	+1	known	silent	c.273	p.V91	1.000	NULL	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	FNDC3A	HGNC	ENSG00000102531				143	0	0	182	46	20.1754
CCDC70	0	genome.wustl.edu	37	13	52439593	52439593	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	13	52439593	52439593	C	T	SNP	CCDC70	ENST00000242819	human	ensembl	74_37	+1	known	missense	c.79	p.R27W	0.323	NULL	NULL	-	no_errors	CCDC70	HGNC	ENSG00000123171				100	0	0	123	22	15.1724
PIBF1	0	genome.wustl.edu	37	13	73369627	73369627	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	13	73369627	73369627	A	G	SNP	PIBF1	ENST00000326291	human	ensembl	74_37	+1	known	missense	c.484	p.T162A	0.985	NULL	superfamily_t-SNARE	-	no_errors	PIBF1	HGNC	ENSG00000083535				114	0	0	112	34	23.2877
MYCBP2	0	genome.wustl.edu	37	13	77672645	77672645	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	13	77672645	77672645	G	A	SNP	MYCBP2	ENST00000407578	human	ensembl	74_37	-1	known	missense	c.8644	p.R2882C	1.000	superfamily_ARM-type_fold	pfam_PHR,pfam_Reg_chr_condens,pfam_Filamin/ABP280_repeat-like,superfamily_RCC1/BLIP-II,superfamily_Galactose-bd-like,superfamily_Ig_E-set,superfamily_ARM-type_fold,smart_Znf_RING,pfscan_Filamin/ABP280_repeat-like,pfscan_Znf_RING,pfscan_Reg_chr_condens,prints_Reg_chr_condens	-	no_errors	MYCBP2	HGNC	ENSG00000005810				105	0	0	139	35	20.1149
MYCBP2	0	genome.wustl.edu	37	13	77714270	77714270	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	13	77714270	77714270	G	A	SNP	MYCBP2	ENST00000407578	human	ensembl	74_37	-1	known	missense	c.7430	p.A2477V	1.000	superfamily_ARM-type_fold	pfam_PHR,pfam_Reg_chr_condens,pfam_Filamin/ABP280_repeat-like,superfamily_RCC1/BLIP-II,superfamily_Galactose-bd-like,superfamily_Ig_E-set,superfamily_ARM-type_fold,smart_Znf_RING,pfscan_Filamin/ABP280_repeat-like,pfscan_Znf_RING,pfscan_Reg_chr_condens,prints_Reg_chr_condens	-	no_errors	MYCBP2	HGNC	ENSG00000005810				64	0	0	66	15	18.5185
MYCBP2	0	genome.wustl.edu	37	13	77779485	77779485	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	13	77779485	77779485	G	T	SNP	MYCBP2	ENST00000407578	human	ensembl	74_37	-1	known	nonsense	c.3749	p.S1250*	1.000	pfam_PHR,superfamily_ARM-type_fold	pfam_PHR,pfam_Reg_chr_condens,pfam_Filamin/ABP280_repeat-like,superfamily_RCC1/BLIP-II,superfamily_Galactose-bd-like,superfamily_Ig_E-set,superfamily_ARM-type_fold,smart_Znf_RING,pfscan_Filamin/ABP280_repeat-like,pfscan_Znf_RING,pfscan_Reg_chr_condens,prints_Reg_chr_condens	-	no_errors	MYCBP2	HGNC	ENSG00000005810				127	1	0.78125	122	37	23.2704
MYCBP2	0	genome.wustl.edu	37	13	77807400	77807400	+	Splice_Site	SNP	T	T	C			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	13	77807400	77807400	T	C	SNP	MYCBP2	ENST00000407578	human	ensembl	74_37	-1	known	splice_site	c.2630-2	e18-2	1.000	-	-	-	no_errors	MYCBP2	HGNC	ENSG00000005810				125	0	0	165	47	22.1698
SCEL-AS1	0	genome.wustl.edu	37	13	78173930	78173930	+	RNA	SNP	G	G	C			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	13	78173930	78173930	G	C	SNP	SCEL-AS1	ENST00000457528	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SCEL-AS1	HGNC	ENSG00000224347				37	0	0	46	19	29.2308
SLITRK1	0	genome.wustl.edu	37	13	84454312	84454312	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	13	84454312	84454312	G	A	SNP	SLITRK1	ENST00000377084	human	ensembl	74_37	-1	known	missense	c.1331	p.A444V	0.987	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	SLITRK1	HGNC	ENSG00000178235				159	0	0	177	40	18.4332
MIR17HG	0	genome.wustl.edu	37	13	92003501	92003501	+	RNA	SNP	T	T	C			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	13	92003501	92003501	T	C	SNP	MIR17HG	ENST00000384829	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	MIR17HG	HGNC	ENSG00000215417				200	0	0	221	51	18.75
UGGT2	0	genome.wustl.edu	37	13	96589280	96589280	+	Silent	SNP	A	A	G			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	13	96589280	96589280	A	G	SNP	UGGT2	ENST00000376747	human	ensembl	74_37	-1	known	silent	c.1875	p.G625	1.000	NULL	pfam_UDP-g_GGtrans,pfam_Glyco_trans_8	-	no_errors	UGGT2	HGNC	ENSG00000102595				160	0	0	175	42	19.3548
MBNL2	0	genome.wustl.edu	37	13	97999281	97999281	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	13	97999281	97999281	C	T	SNP	MBNL2	ENST00000376673	human	ensembl	74_37	+1	known	missense	c.764	p.A255V	1.000	NULL	pfam_Znf_CCCH,smart_Znf_CCCH	-	no_errors	MBNL2	HGNC	ENSG00000139793				36	0	0	23	12	34.2857
IPO5	0	genome.wustl.edu	37	13	98664543	98664543	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	13	98664543	98664543	C	T	SNP	IPO5	ENST00000261574	human	ensembl	74_37	+1	known	missense	c.2153	p.T718I	1.000	superfamily_ARM-type_fold	pfam_HEAT,superfamily_ARM-type_fold,pfscan_Importin-beta_N	-	no_errors	IPO5	HGNC	ENSG00000065150				195	0	0	186	39	17.3333
WARS	0	genome.wustl.edu	37	14	100801346	100801346	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	14	100801346	100801346	C	T	SNP	WARS	ENST00000355338	human	ensembl	74_37	-1	known	missense	c.1282	p.G428S	0.998	pfam_aa-tRNA-synth_Ic,tigrfam_Trp-tRNA-ligase	pfam_aa-tRNA-synth_Ic,pfam_WHEP-TRS,superfamily_S15_NS1_RNA-bd,pfscan_WHEP-TRS,prints_Trp-tRNA-ligase,tigrfam_Trp-tRNA-ligase	-	no_errors	WARS	HGNC	ENSG00000140105				75	0	0	85	15	15
MIR323B	0	genome.wustl.edu	37	14	101522631	101522631	+	RNA	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	14	101522631	101522631	G	A	SNP	MIR323B	ENST00000385269	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.950	-	-	-	no_errors	MIR323B	HGNC	ENSG00000208004				30	0	0	22	9	29.0323
DIO3OS	0	genome.wustl.edu	37	14	102026643	102026643	+	RNA	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	14	102026643	102026643	G	A	SNP	DIO3OS	ENST00000408206	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.938	-	-	-	no_errors	DIO3OS	HGNC	ENSG00000258498				15	0	0	24	5	17.2414
PPP1R13B	0	genome.wustl.edu	37	14	104201496	104201496	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	14	104201496	104201496	C	T	SNP	PPP1R13B	ENST00000202556	human	ensembl	74_37	-1	known	missense	c.3268	p.A1090T	1.000	NULL	pfam_Ankyrin_rpt,pfam_SH3_domain,pfam_SH3_2,superfamily_Ankyrin_rpt-contain_dom,superfamily_SH3_domain,smart_Ankyrin_rpt,smart_SH3_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SH3_domain,prints_SH3_domain	-	no_errors	PPP1R13B	HGNC	ENSG00000088808				88	0	0	74	16	17.7778
AHNAK2	0	genome.wustl.edu	37	14	105414292	105414292	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	14	105414292	105414292	C	T	SNP	AHNAK2	ENST00000333244	human	ensembl	74_37	-1	known	missense	c.7496	p.G2499D	0.116	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK2	HGNC	ENSG00000185567				386	2	0.515464	427	82	16.11
BRF1	0	genome.wustl.edu	37	14	105685344	105685344	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	14	105685344	105685344	C	A	SNP	BRF1	ENST00000546474	human	ensembl	74_37	-1	known	missense	c.1506	p.K502N	1.000	pfam_BRF1_TBP-bd	pfam_TFIIB_cyclin,pfam_BRF1_TBP-bd,pfam_Znf_TFIIB,superfamily_Cyclin-like,smart_Cyclin-like,pfscan_Znf_TFIIB,prints_TFIIB	-	no_errors	BRF1	HGNC	ENSG00000185024				232	0	0	252	74	22.6994
BRF1	0	genome.wustl.edu	37	14	105739058	105739058	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	14	105739058	105739058	G	A	SNP	BRF1	ENST00000546474	human	ensembl	74_37	-1	known	missense	c.439	p.H147Y	0.999	pfam_TFIIB_cyclin,superfamily_Cyclin-like,smart_Cyclin-like,prints_TFIIB	pfam_TFIIB_cyclin,pfam_BRF1_TBP-bd,pfam_Znf_TFIIB,superfamily_Cyclin-like,smart_Cyclin-like,pfscan_Znf_TFIIB,prints_TFIIB	-	no_errors	BRF1	HGNC	ENSG00000185024				76	0	0	71	25	26.0417
TEP1	0	genome.wustl.edu	37	14	20850088	20850088	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	14	20850088	20850088	C	T	SNP	TEP1	ENST00000262715	human	ensembl	74_37	-1	known	missense	c.4408	p.V1470I	0.989	NULL	pfam_TROVE,pfam_TEP1_N,pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_P-loop_NTPase,smart_WD40_repeat,pfscan_NACHT_NTPase,pfscan_TROVE,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	TEP1	HGNC	ENSG00000129566				155	0	0	173	47	21.3636
ECRP	0	genome.wustl.edu	37	14	21388395	21388395	+	RNA	SNP	A	A	G			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	14	21388395	21388395	A	G	SNP	ECRP	ENST00000555624	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RP11-84C10.2	Clone_based_vega_gene	ENSG00000136315				52	0	0	72	15	17.2414
ABHD4	0	genome.wustl.edu	37	14	23072897	23072897	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	14	23072897	23072897	C	T	SNP	ABHD4	ENST00000428304	human	ensembl	74_37	+1	known	missense	c.553	p.R185C	0.999	pfam_AB_hydrolase_1	pfam_AB_hydrolase_1,prints_AB_hydrolase_1	-	no_errors	ABHD4	HGNC	ENSG00000100439				186	0	0	188	54	22.314
IRF9	0	genome.wustl.edu	37	14	24632182	24632182	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	14	24632182	24632182	C	A	SNP	IRF9	ENST00000396864	human	ensembl	74_37	+1	known	missense	c.188	p.A63E	1.000	pfam_Interferon_reg_fact_DNA-bd_dom,smart_Interferon_reg_fact_DNA-bd_dom,prints_Interferon_reg_fact_DNA-bd_dom	pfam_Interferon_reg_fact_DNA-bd_dom,pfam_Interferon_reg_factor-3,superfamily_SMAD_FHA_domain,smart_Interferon_reg_fact_DNA-bd_dom,prints_Interferon_reg_fact_DNA-bd_dom	-	no_errors	IRF9	HGNC	ENSG00000213928				51	0	0	47	15	24.1935
NPAS3	0	genome.wustl.edu	37	14	34269189	34269189	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	14	34269189	34269189	G	A	SNP	NPAS3	ENST00000356141	human	ensembl	74_37	+1	known	missense	c.1676	p.R559H	1.000	NULL	pfam_PAS_fold_3,pfam_PAS_fold,superfamily_PAS,superfamily_bHLH_dom,smart_bHLH_dom,smart_PAS,pfscan_PAS,pfscan_bHLH_dom	-	no_errors	NPAS3	HGNC	ENSG00000151322				54	0	0	54	9	14.2857
BRMS1L	0	genome.wustl.edu	37	14	36302264	36302264	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	14	36302264	36302264	C	T	SNP	BRMS1L	ENST00000216807	human	ensembl	74_37	+1	known	missense	c.314	p.P105L	1.000	pfam_Sds3	pfam_Sds3	-	no_errors	BRMS1L	HGNC	ENSG00000100916				32	0	0	32	9	21.9512
BRMS1L	0	genome.wustl.edu	37	14	36304094	36304094	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	14	36304094	36304094	G	A	SNP	BRMS1L	ENST00000216807	human	ensembl	74_37	+1	known	missense	c.406	p.E136K	1.000	pfam_Sds3	pfam_Sds3	-	no_errors	BRMS1L	HGNC	ENSG00000100916				72	0	0	74	13	14.9425
TTC6	0	genome.wustl.edu	37	14	38295439	38295439	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	14	38295439	38295439	A	G	SNP	TTC6	ENST00000478811	human	ensembl	74_37	+1	known	missense	c.1207	p.I403V	0.323	smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	pfam_TPR_1,pfam_TPR_2,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC6	HGNC	ENSG00000139865				159	0	0	145	30	17.1429
FANCM	0	genome.wustl.edu	37	14	45605364	45605364	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	14	45605364	45605364	G	A	SNP	FANCM	ENST00000267430	human	ensembl	74_37	+1	known	missense	c.130	p.A44T	0.325	NULL	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,superfamily_Restrct_endonuc-II-like,superfamily_RuvA_2-like,smart_Helicase_ATP-bd,smart_Helicase_C,smart_ERCC4_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	FANCM	HGNC	ENSG00000187790				95	0	0	129	24	15.6863
MDGA2	0	genome.wustl.edu	37	14	47314993	47314993	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	14	47314993	47314993	C	T	SNP	MDGA2	ENST00000439988	human	ensembl	74_37	-1	known	missense	c.2965	p.A989T	1.000	pfam_MAM_dom,superfamily_ConA-like_lec_gl_sf,smart_MAM_dom,pfscan_MAM_dom	pfam_Ig_I-set,pfam_MAM_dom,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_MAM_dom,pfscan_MAM_dom,pfscan_Ig-like_dom	-	no_errors	MDGA2	Uniprot_gn	ENSG00000272781				63	0	0	76	13	14.6067
POLE2	0	genome.wustl.edu	37	14	50122404	50122404	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	14	50122404	50122404	G	A	SNP	POLE2	ENST00000216367	human	ensembl	74_37	-1	known	missense	c.913	p.R305C	1.000	pfam_DNA_pol_alpha/epsilon_bsu,pirsf_DNA_pol_e_bsu	pfam_DNA_pol_alpha/epsilon_bsu,pfam_DNA_pol_e_bsu_N,pirsf_DNA_pol_e_bsu	-	no_errors	POLE2	HGNC	ENSG00000100479				281	0	0	324	59	15.4047
OTX2	0	genome.wustl.edu	37	14	57271048	57271048	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	14	57271048	57271048	C	T	SNP	OTX2	ENST00000339475	human	ensembl	74_37	-1	known	missense	c.131	p.R44Q	1.000	superfamily_Homeodomain-like,pfscan_Homeobox_dom	pfam_Otx_TF_C,pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Otx2_TF,prints_Otx_TF	-	no_errors	OTX2	HGNC	ENSG00000165588				69	0	0	88	17	16.1905
DACT1	0	genome.wustl.edu	37	14	59113480	59113480	+	Silent	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	14	59113480	59113480	C	T	SNP	DACT1	ENST00000335867	human	ensembl	74_37	+1	known	silent	c.2139	p.Y713	0.001	NULL	NULL	-	no_errors	DACT1	HGNC	ENSG00000165617				73	0	0	87	25	22.3214
L3HYPDH	0	genome.wustl.edu	37	14	59950671	59950671	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	14	59950671	59950671	G	A	SNP	L3HYPDH	ENST00000247194	human	ensembl	74_37	-1	known	missense	c.364	p.P122S	0.981	pfam_Pro_racemase_fam,pirsf_Pro_racemase_fam	pfam_Pro_racemase_fam,pirsf_Pro_racemase_fam	-	no_errors	L3HYPDH	HGNC	ENSG00000126790				9	0	0	19	4	17.3913
C14orf39	0	genome.wustl.edu	37	14	60923730	60923730	+	Silent	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	14	60923730	60923730	C	T	SNP	C14orf39	ENST00000321731	human	ensembl	74_37	-1	known	silent	c.1263	p.T421	0.998	NULL	NULL	-	no_errors	C14orf39	HGNC	ENSG00000179008				319	0	0	327	57	14.8438
PPP2R5E	0	genome.wustl.edu	37	14	63848863	63848863	+	Silent	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	14	63848863	63848863	C	T	SNP	PPP2R5E	ENST00000337537	human	ensembl	74_37	-1	known	silent	c.1215	p.A405	0.001	pfam_PP2A_B56,superfamily_ARM-type_fold,pirsf_PP2A_B56	pfam_PP2A_B56,superfamily_ARM-type_fold,pirsf_PP2A_B56	-	no_errors	PPP2R5E	HGNC	ENSG00000154001				53	0	0	58	12	17.1429
ZBTB25	0	genome.wustl.edu	37	14	64954669	64954669	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	14	64954669	64954669	G	A	SNP	ZBTB25	ENST00000394715	human	ensembl	74_37	-1	known	missense	c.280	p.R94C	1.000	superfamily_BTB/POZ_fold,smart_BTB/POZ-like	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB25	HGNC	ENSG00000089775				124	0	0	142	44	23.6559
HSPA2	0	genome.wustl.edu	37	14	65008770	65008770	+	Silent	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	14	65008770	65008770	G	A	SNP	HSPA2	ENST00000247207	human	ensembl	74_37	+1	known	silent	c.1203	p.P401	0.214	pfam_Hsp_70_fam,prints_Hsp_70_fam	pfam_Hsp_70_fam,pfam_MreB_Mrl,prints_Hsp_70_fam	-	no_errors	HSPA2	HGNC	ENSG00000126803				108	0	0	141	35	19.8864
PAPLN	0	genome.wustl.edu	37	14	73718431	73718431	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	14	73718431	73718431	C	T	SNP	PAPLN	ENST00000427855	human	ensembl	74_37	+1	known	missense	c.730	p.R244W	0.991	pfam_ADAM_spacer1	pfam_Ig_I-set,pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_Ig_V-set,pfam_Immunoglobulin,pfam_Prot_inh_Kunz-m,pfam_PLAC,superfamily_Prot_inh_Kunz-m,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,smart_Prot_inh_Kunz-m,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Prot_inh_Kunz-m,pfscan_Ig-like_dom,prints_Peptidase_M12B_ADAM-TS,prints_Prot_inh_Kunz-m	-	no_errors	PAPLN	HGNC	ENSG00000100767				88	0	0	123	31	20.1299
ACOT1	0	genome.wustl.edu	37	14	74009849	74009849	+	Silent	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	14	74009849	74009849	C	T	SNP	ACOT1	ENST00000311148	human	ensembl	74_37	+1	known	silent	c.756	p.V252	0.000	pfam_BAAT_C,pfam_Dienelactn_hydro,pirsf_Acyl-CoA_thioEstase_long-chain	pfam_BAAT_C,pfam_Thio_Ohase/aa_AcTrfase,pfam_Dienelactn_hydro,pirsf_Acyl-CoA_thioEstase_long-chain	-	no_errors	ACOT1	HGNC	ENSG00000184227				74	0	0	84	30	26.3158
IFT43	0	genome.wustl.edu	37	14	76548898	76548898	+	RNA	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	14	76548898	76548898	G	A	SNP	IFT43	ENST00000553438	human	ensembl	74_37	+1	putative	rna	NULL	NULL	0.008	-	-	-	no_errors	IFT43	HGNC	ENSG00000119650				54	0	0	74	18	19.5652
ZC3H14	0	genome.wustl.edu	37	14	89075670	89075670	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	14	89075670	89075670	A	G	SNP	ZC3H14	ENST00000251038	human	ensembl	74_37	+1	known	missense	c.1928	p.Y643C	0.999	NULL	smart_Znf_CCCH	-	no_errors	ZC3H14	HGNC	ENSG00000100722				125	0	0	139	29	17.2619
UNC79	0	genome.wustl.edu	37	14	94088364	94088364	+	Silent	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	14	94088364	94088364	G	A	SNP	UNC79	ENST00000553484	human	ensembl	74_37	+1	known	silent	c.4851	p.S1617	0.675	superfamily_ARM-type_fold	superfamily_P-loop_NTPase,superfamily_ARM-type_fold	-	no_errors	UNC79	HGNC	ENSG00000133958				130	0	0	154	50	24.5098
CLMN	0	genome.wustl.edu	37	14	95688092	95688092	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	14	95688092	95688092	G	A	SNP	CLMN	ENST00000298912	human	ensembl	74_37	-1	known	missense	c.260	p.S87L	1.000	pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	-	no_errors	CLMN	HGNC	ENSG00000165959				100	0	0	85	26	23.4234
PAPOLA	0	genome.wustl.edu	37	14	96986562	96986562	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	14	96986562	96986562	G	A	SNP	PAPOLA	ENST00000216277	human	ensembl	74_37	+1	known	missense	c.179	p.R60H	1.000	pfam_PolA_pol_cen_dom,pirsf_PolyA_polymerase	pfam_PolA_pol_cen_dom,pfam_PolA_pol_RNA-bd_dom,pfam_Nucleotidyltransferase,superfamily_NuclTrfase_I_C,pirsf_PolyA_polymerase	-	no_errors	PAPOLA	HGNC	ENSG00000090060				113	0	0	132	38	22.3529
SNHG14	0	genome.wustl.edu	37	15	25425477	25425477	+	RNA	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	15	25425477	25425477	G	A	SNP	SNHG14	ENST00000441592	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SNHG14	HGNC	ENSG00000224078				33	0	0	31	10	24.3902
GABRB3	0	genome.wustl.edu	37	15	26793063	26793063	+	Silent	SNP	T	T	C			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	15	26793063	26793063	T	C	SNP	GABRB3	ENST00000299267	human	ensembl	74_37	-1	known	silent	c.1299	p.S433	0.149	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,tigrfam_Neur_channel	pfam_Neurotrans-gated_channel_TM,pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABAA_rcpt,prints_GABAAb_rcpt,prints_Neur_channel,prints_GABBAg_rcpt,tigrfam_Neur_channel	-	no_errors	GABRB3	HGNC	ENSG00000166206				98	0	0	121	24	16.5517
GABRB3	0	genome.wustl.edu	37	15	26812789	26812789	+	Silent	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	15	26812789	26812789	C	T	SNP	GABRB3	ENST00000299267	human	ensembl	74_37	-1	known	silent	c.774	p.T258	0.001	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,prints_GABAA_rcpt,tigrfam_Neur_channel	pfam_Neurotrans-gated_channel_TM,pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABAA_rcpt,prints_GABAAb_rcpt,prints_Neur_channel,prints_GABBAg_rcpt,tigrfam_Neur_channel	-	no_errors	GABRB3	HGNC	ENSG00000166206				113	0	0	124	31	20
HERC2	0	genome.wustl.edu	37	15	28474714	28474714	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	15	28474714	28474714	C	A	SNP	HERC2	ENST00000261609	human	ensembl	74_37	-1	known	missense	c.5012	p.G1671V	1.000	NULL	pfam_Reg_chr_condens,pfam_HECT,pfam_CPH_domain,pfam_Mib_Herc2,pfam_Cyt_B5-like_heme/steroid-bd,pfam_Znf_ZZ,pfam_APC_su10/DOC_dom,superfamily_RCC1/BLIP-II,superfamily_HECT,superfamily_Galactose-bd-like,superfamily_Cyt_B5-like_heme/steroid-bd,superfamily_UBA-like,superfamily_CUB_dom,smart_Beta-propeller_rpt_TECPR,smart_Znf_ZZ,smart_HECT,pfscan_HECT,pfscan_Znf_ZZ,pfscan_Reg_chr_condens,pfscan_Cyt_B5-like_heme/steroid-bd,prints_Reg_chr_condens	-	no_errors	HERC2	HGNC	ENSG00000128731				223	1	0.446429	258	68	20.8589
HERC2	0	genome.wustl.edu	37	15	28510807	28510807	+	Silent	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	15	28510807	28510807	C	T	SNP	HERC2	ENST00000261609	human	ensembl	74_37	-1	known	silent	c.1827	p.A609	0.000	pfam_Reg_chr_condens,superfamily_RCC1/BLIP-II,pfscan_Reg_chr_condens	pfam_Reg_chr_condens,pfam_HECT,pfam_CPH_domain,pfam_Mib_Herc2,pfam_Cyt_B5-like_heme/steroid-bd,pfam_Znf_ZZ,pfam_APC_su10/DOC_dom,superfamily_RCC1/BLIP-II,superfamily_HECT,superfamily_Galactose-bd-like,superfamily_Cyt_B5-like_heme/steroid-bd,superfamily_UBA-like,superfamily_CUB_dom,smart_Beta-propeller_rpt_TECPR,smart_Znf_ZZ,smart_HECT,pfscan_HECT,pfscan_Znf_ZZ,pfscan_Reg_chr_condens,pfscan_Cyt_B5-like_heme/steroid-bd,prints_Reg_chr_condens	-	no_errors	HERC2	HGNC	ENSG00000128731				128	0	0	141	27	16.0714
SCG5	0	genome.wustl.edu	37	15	32988792	32988792	+	Silent	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	15	32988792	32988792	G	A	SNP	SCG5	ENST00000300175	human	ensembl	74_37	+1	known	silent	c.621	p.E207	0.994	NULL	pfam_Secretogranin_V	-	no_errors	SCG5	HGNC	ENSG00000166922				36	0	0	29	8	21.6216
RYR3	0	genome.wustl.edu	37	15	34072445	34072445	+	Silent	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	15	34072445	34072445	G	A	SNP	RYR3	ENST00000389232	human	ensembl	74_37	+1	known	silent	c.9171	p.S3057	0.002	superfamily_ARM-type_fold	pfam_Ryanodine_rcpt,pfam_Ca-rel_channel,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ConA-like_lec_gl_sf,superfamily_4_helix_cytokine-like_core,superfamily_ARM-type_fold,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_hand_dom,pfscan_MIR_motif	-	no_errors	RYR3	HGNC	ENSG00000198838				28	0	0	33	8	19.5122
C15orf52	0	genome.wustl.edu	37	15	40630070	40630070	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	15	40630070	40630070	G	A	SNP	C15orf52	ENST00000559313	human	ensembl	74_37	-1	known	missense	c.670	p.P224S	0.006	NULL	NULL	-	no_errors	C15orf52	HGNC	ENSG00000188549				27	0	0	30	10	25
DNAJC17	0	genome.wustl.edu	37	15	41066555	41066555	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	15	41066555	41066555	G	A	SNP	DNAJC17	ENST00000220496	human	ensembl	74_37	-1	known	missense	c.680	p.A227V	1.000	pfam_RRM_dom	pfam_DnaJ_domain,pfam_RRM_dom,superfamily_DnaJ_domain,smart_DnaJ_domain,pfscan_DnaJ_domain,prints_DnaJ_domain	-	no_errors	DNAJC17	HGNC	ENSG00000104129				324	1	0.307692	338	79	18.9448
DLL4	0	genome.wustl.edu	37	15	41227195	41227195	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	15	41227195	41227195	G	A	SNP	DLL4	ENST00000249749	human	ensembl	74_37	+1	known	missense	c.1120	p.G374R	1.000	pfam_EG-like_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom	pfam_EG-like_dom,pfam_Notch_ligand_N,pfam_DSL,pfam_EGF_extracell,superfamily_Growth_fac_rcpt_N_dom,smart_DSL,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_DSL,pfscan_EG-like_dom	-	no_errors	DLL4	HGNC	ENSG00000128917				112	0	0	139	28	16.7665
MAPKBP1	0	genome.wustl.edu	37	15	42116010	42116010	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	15	42116010	42116010	C	T	SNP	MAPKBP1	ENST00000456763	human	ensembl	74_37	+1	known	missense	c.3982	p.P1328S	0.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	MAPKBP1	HGNC	ENSG00000137802				147	0	0	210	45	17.6471
GANC	0	genome.wustl.edu	37	15	42570682	42570682	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	15	42570682	42570682	G	A	SNP	GANC	ENST00000318010	human	ensembl	74_37	+1	known	missense	c.95	p.R32H	1.000	NULL	pfam_Glyco_hydro_31,superfamily_Glycoside_hydrolase_SF,superfamily_Gal_mutarotase_SF_dom	-	no_errors	GANC	HGNC	ENSG00000214013				86	0	0	121	19	13.5714
ZNF106	0	genome.wustl.edu	37	15	42717097	42717097	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	15	42717097	42717097	C	T	SNP	ZNF106	ENST00000263805	human	ensembl	74_37	-1	known	missense	c.5056	p.D1686N	1.000	superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_Znf_C2H2-like,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	ZNF106	HGNC	ENSG00000103994				70	0	0	61	19	23.75
CATSPER2	0	genome.wustl.edu	37	15	43925050	43925050	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	15	43925050	43925050	C	A	SNP	CATSPER2	ENST00000321596	human	ensembl	74_37	-1	known	nonsense	c.1261	p.E421*	0.001	NULL	pfam_Ion_trans_dom	-	no_errors	CATSPER2	HGNC	ENSG00000166762				53	0	0	43	23	34.8485
DUOX2	0	genome.wustl.edu	37	15	45401073	45401073	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	15	45401073	45401073	G	T	SNP	DUOX2	ENST00000389039	human	ensembl	74_37	-1	known	missense	c.1312	p.L438M	0.961	pfam_Haem_peroxidase_animal,superfamily_Haem_peroxidase,pfscan_Haem_peroxidase_animal	pfam_Haem_peroxidase_animal,pfam_Fe_red_NAD-bd_6,pfam_FAD-bd_8,pfam_Fe3_Rdtase_TM_dom,pfam_EF_hand_dom,superfamily_Haem_peroxidase,superfamily_Riboflavin_synthase-like_b-brl,smart_EF_hand_dom,pfscan_EF_hand_dom,pfscan_Haem_peroxidase_animal,prints_Haem_peroxidase_animal_subgr,prints_Recoverin	-	no_errors	DUOX2	HGNC	ENSG00000140279				93	0	0	128	36	21.9512
WDR72	0	genome.wustl.edu	37	15	53992122	53992122	+	Silent	SNP	A	A	G			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	15	53992122	53992122	A	G	SNP	WDR72	ENST00000360509	human	ensembl	74_37	-1	known	silent	c.1590	p.I530	0.362	superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR72	HGNC	ENSG00000166415				141	0	0	174	38	17.9245
ZNF280D	0	genome.wustl.edu	37	15	56974620	56974620	+	Nonsense_Mutation	SNP	G	G	C			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	15	56974620	56974620	G	C	SNP	ZNF280D	ENST00000267807	human	ensembl	74_37	-1	known	nonsense	c.836	p.S279*	0.980	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF280D	HGNC	ENSG00000137871				80	0	0	57	3	5
GCOM1	0	genome.wustl.edu	37	15	57918078	57918078	+	Silent	SNP	C	C	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	15	57918078	57918078	C	A	SNP	GCOM1	ENST00000380569	human	ensembl	74_37	+1	known	silent	c.513	p.S171	0.967	NULL	NULL	-	no_errors	GCOM1	HGNC	ENSG00000137878				58	0	0	86	14	14
ALDH1A2	0	genome.wustl.edu	37	15	58287308	58287308	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	15	58287308	58287308	C	T	SNP	ALDH1A2	ENST00000249750	human	ensembl	74_37	-1	known	missense	c.523	p.E175K	1.000	pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH	pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH	-	no_errors	ALDH1A2	HGNC	ENSG00000128918				247	0	0	260	60	18.75
ALDH1A2	0	genome.wustl.edu	37	15	58357786	58357786	+	Silent	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	15	58357786	58357786	C	T	SNP	ALDH1A2	ENST00000249750	human	ensembl	74_37	-1	known	silent	c.63	p.A21	1.000	superfamily_Ald_DH/histidinol_DH	pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH	-	no_errors	ALDH1A2	HGNC	ENSG00000128918				57	0	0	57	20	25.974
HERC1	0	genome.wustl.edu	37	15	63966684	63966684	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	15	63966684	63966684	C	T	SNP	HERC1	ENST00000443617	human	ensembl	74_37	-1	known	missense	c.7703	p.R2568Q	1.000	NULL	pfam_Reg_chr_condens,pfam_HECT,pfam_WD40_repeat,pfam_SPRY_rcpt,superfamily_RCC1/BLIP-II,superfamily_HECT,superfamily_WD40_repeat_dom,superfamily_ConA-like_lec_gl_sf,superfamily_UBA-like,superfamily_ARM-type_fold,smart_SPla/RYanodine_receptor_subgr,smart_WD40_repeat,smart_HECT,pfscan_B30.2/SPRY,pfscan_HECT,pfscan_Reg_chr_condens,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Reg_chr_condens	-	no_errors	HERC1	HGNC	ENSG00000103657				43	0	0	58	9	13.4328
ISLR2	0	genome.wustl.edu	37	15	74426801	74426801	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	15	74426801	74426801	C	T	SNP	ISLR2	ENST00000361742	human	ensembl	74_37	+1	known	missense	c.1706	p.A569V	1.000	superfamily_Fibronectin_type3	pfam_Leu-rich_rpt,superfamily_Fibronectin_type3,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,pfscan_Ig-like_dom	-	no_errors	ISLR2	HGNC	ENSG00000167178				29	0	0	36	7	16.2791
STRA6	0	genome.wustl.edu	37	15	74473191	74473191	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	15	74473191	74473191	G	A	SNP	STRA6	ENST00000563965	human	ensembl	74_37	-1	known	missense	c.1889	p.A630V	0.021	NULL	NULL	-	no_errors	STRA6	HGNC	ENSG00000137868				155	0	0	168	38	18.4466
CLK3	0	genome.wustl.edu	37	15	74912421	74912421	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	15	74912421	74912421	G	A	SNP	CLK3	ENST00000395066	human	ensembl	74_37	+1	known	missense	c.668	p.R223Q	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	CLK3	HGNC	ENSG00000179335				240	0	0	278	83	22.9917
CSPG4	0	genome.wustl.edu	37	15	75980305	75980305	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	15	75980305	75980305	C	T	SNP	CSPG4	ENST00000308508	human	ensembl	74_37	-1	known	missense	c.3101	p.R1034Q	0.997	NULL	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,pfscan_Laminin_G	-	no_errors	CSPG4	HGNC	ENSG00000173546				69	0	0	100	29	22.4806
CSPG4	0	genome.wustl.edu	37	15	75980366	75980366	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	15	75980366	75980366	C	T	SNP	CSPG4	ENST00000308508	human	ensembl	74_37	-1	known	missense	c.3040	p.V1014M	0.418	NULL	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,pfscan_Laminin_G	-	no_errors	CSPG4	HGNC	ENSG00000173546				98	0	0	119	28	19.0476
FBXO22	0	genome.wustl.edu	37	15	76225165	76225165	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	15	76225165	76225165	G	A	SNP	FBXO22	ENST00000308275	human	ensembl	74_37	+1	known	missense	c.934	p.A312T	0.997	pfam_FIST_C_domain	pfam_FIST_C_domain,pfam_F-box_dom,superfamily_F-box_dom	-	no_errors	FBXO22	HGNC	ENSG00000167196				110	0	0	144	27	15.7895
C15orf27	0	genome.wustl.edu	37	15	76430103	76430103	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	15	76430103	76430103	G	A	SNP	C15orf27	ENST00000388942	human	ensembl	74_37	+1	known	missense	c.94	p.E32K	0.992	NULL	NULL	-	no_errors	C15orf27	HGNC	ENSG00000169758				234	0	0	253	53	17.3203
ISL2	0	genome.wustl.edu	37	15	76632885	76632885	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	15	76632885	76632885	G	A	SNP	ISL2	ENST00000558656	human	ensembl	74_37	+1	known	missense	c.517	p.A173T	0.993	NULL	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	ISL2	HGNC	ENSG00000159556				47	0	0	56	14	20
LOC645752	0	genome.wustl.edu	37	15	78219094	78219094	+	RNA	SNP	A	A	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	15	78219094	78219094	A	T	SNP	LOC645752	ENST00000567226	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	RP11-114H24.2	Clone_based_vega_gene	ENSG00000260776				68	0	0	68	19	21.8391
TBC1D2B	0	genome.wustl.edu	37	15	78295700	78295700	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	15	78295700	78295700	C	T	SNP	TBC1D2B	ENST00000300584	human	ensembl	74_37	-1	known	missense	c.2521	p.V841I	1.000	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,superfamily_Prefoldin,smart_Pleckstrin_homology,smart_Rab-GTPase-TBC_dom,pfscan_Pleckstrin_homology,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D2B	HGNC	ENSG00000167202				59	0	0	87	19	17.9245
ENSG00000261303	0	genome.wustl.edu	37	15	79026027	79026027	+	RNA	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	15	79026027	79026027	G	A	SNP	ENSG00000261303	ENST00000568337	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	RP11-160C18.2	Clone_based_vega_gene	ENSG00000261303				42	0	0	62	14	18.4211
TMED3	0	genome.wustl.edu	37	15	79603625	79603625	+	Silent	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	15	79603625	79603625	C	T	SNP	TMED3	ENST00000299705	human	ensembl	74_37	+1	known	silent	c.34	p.L12	0.946	NULL	pfam_GOLD,superfamily_GOLD,pfscan_GOLD	-	no_errors	TMED3	HGNC	ENSG00000166557				23	0	0	21	9	30
KIAA1024	0	genome.wustl.edu	37	15	79748713	79748713	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	15	79748713	79748713	A	G	SNP	KIAA1024	ENST00000305428	human	ensembl	74_37	+1	known	missense	c.224	p.N75S	0.843	NULL	pfam_UPF0258	-	no_errors	KIAA1024	HGNC	ENSG00000169330				126	0	0	167	9	5.11364
ABHD17C	0	genome.wustl.edu	37	15	81046586	81046586	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	15	81046586	81046586	G	A	SNP	ABHD17C	ENST00000258884	human	ensembl	74_37	+1	known	missense	c.865	p.E289K	1.000	pfam_Peptidase_S9,pfam_Dienelactn_hydro	pfam_Peptidase_S9,pfam_Dienelactn_hydro	-	no_errors	ABHD17C	HGNC	ENSG00000136379				75	0	0	77	14	15.3846
EFTUD1	0	genome.wustl.edu	37	15	82443816	82443816	+	Silent	SNP	A	A	G			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	15	82443816	82443816	A	G	SNP	EFTUD1	ENST00000268206	human	ensembl	74_37	-1	known	silent	c.2979	p.G993	0.015	pfam_EFG_V,superfamily_EFG_III-V,smart_EFG_V	pfam_EF_GTP-bd_dom,pfam_EFG_V,pfam_Transl_elong_EFTu/EF1A_2,superfamily_P-loop_NTPase,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_EFG_III-V,superfamily_Transl_B-barrel,smart_EFG_V,prints_EF_GTP-bd_dom,tigrfam_Small_GTP-bd_dom	-	no_errors	EFTUD1	HGNC	ENSG00000140598				127	0	0	189	36	16
AKAP13	0	genome.wustl.edu	37	15	86286871	86286871	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	15	86286871	86286871	G	T	SNP	AKAP13	ENST00000361243	human	ensembl	74_37	+1	known	missense	c.8219	p.R2740L	1.000	NULL	pfam_DH-domain,pfam_Pleckstrin_homology,superfamily_DH-domain,superfamily_Ankyrin_rpt-contain_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_DH-domain	-	no_errors	AKAP13	HGNC	ENSG00000170776				305	0	0	346	70	16.8269
DET1	0	genome.wustl.edu	37	15	89074383	89074383	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	15	89074383	89074383	C	T	SNP	DET1	ENST00000444300	human	ensembl	74_37	-1	known	missense	c.587	p.R196Q	1.000	pfam_De-etiolated_protein_1_Det1	pfam_De-etiolated_protein_1_Det1	-	no_errors	DET1	HGNC	ENSG00000140543				69	0	0	74	13	14.9425
ZNF710	0	genome.wustl.edu	37	15	90611774	90611774	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	15	90611774	90611774	G	A	SNP	ZNF710	ENST00000268154	human	ensembl	74_37	+1	known	missense	c.1405	p.G469S	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF710	HGNC	ENSG00000140548				242	0	0	261	75	22.3214
SLCO3A1	0	genome.wustl.edu	37	15	92459652	92459652	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	15	92459652	92459652	G	A	SNP	SLCO3A1	ENST00000318445	human	ensembl	74_37	+1	known	missense	c.610	p.D204N	1.000	pfam_OA_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,tigrfam_OA_transporter	pfam_OA_transporter,pfam_MFS,pfam_Kazal_dom,superfamily_MFS_dom_general_subst_transpt,tigrfam_OA_transporter	-	no_errors	SLCO3A1	HGNC	ENSG00000176463				32	0	0	36	8	18.1818
MYH11	0	genome.wustl.edu	37	16	15797971	15797971	+	Silent	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	16	15797971	15797971	G	A	SNP	MYH11	ENST00000396324	human	ensembl	74_37	-1	known	silent	c.5817	p.N1939	1.000	NULL	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,superfamily_t-SNARE,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS	-	no_errors	MYH11	HGNC	ENSG00000133392				187	0	0	222	69	23.7113
ABCC6	0	genome.wustl.edu	37	16	16263538	16263538	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	16	16263538	16263538	C	T	SNP	ABCC6	ENST00000205557	human	ensembl	74_37	-1	known	missense	c.2960	p.R987H	0.988	superfamily_ABC1_TM_dom,pfscan_ABC1_TM_dom,tigrfam_Multidrug-R_assoc	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_P-loop_NTPase,superfamily_ABC1_TM_dom,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom,tigrfam_Multidrug-R_assoc	-	no_errors	ABCC6	HGNC	ENSG00000091262				34	0	0	37	10	21.2766
GPR139	0	genome.wustl.edu	37	16	20084882	20084882	+	Silent	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	16	20084882	20084882	G	A	SNP	GPR139	ENST00000570682	human	ensembl	74_37	-1	known	silent	c.57	p.P19	1.000	NULL	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srw,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	GPR139	HGNC	ENSG00000180269				27	0	0	34	10	22.7273
TBL3	0	genome.wustl.edu	37	16	2025196	2025196	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	16	2025196	2025196	G	A	SNP	TBL3	ENST00000568546	human	ensembl	74_37	+1	known	missense	c.644	p.R215H	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,pfam_SSU_processome_Utp13,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	TBL3	HGNC	ENSG00000183751				156	0	0	182	37	16.895
UMOD	0	genome.wustl.edu	37	16	20352615	20352615	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	16	20352615	20352615	G	A	SNP	UMOD	ENST00000424589	human	ensembl	74_37	-1	known	missense	c.1474	p.R492W	0.966	pfam_ZP_dom,smart_ZP_dom,pfscan_ZP_dom	pfam_ZP_dom,pfam_EGF-like_Ca-bd_dom,pfam_EG-like_dom,superfamily_Growth_fac_rcpt_N_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_ZP_dom,pfscan_EG-like_dom,pfscan_ZP_dom,prints_ZP_dom	-	no_errors	UMOD	HGNC	ENSG00000169344				88	0	0	106	22	17.1875
UMOD	0	genome.wustl.edu	37	16	20357449	20357449	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	16	20357449	20357449	G	A	SNP	UMOD	ENST00000424589	human	ensembl	74_37	-1	known	missense	c.1280	p.T427M	0.999	pfam_ZP_dom,smart_ZP_dom,pfscan_ZP_dom	pfam_ZP_dom,pfam_EGF-like_Ca-bd_dom,pfam_EG-like_dom,superfamily_Growth_fac_rcpt_N_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_ZP_dom,pfscan_EG-like_dom,pfscan_ZP_dom,prints_ZP_dom	-	no_errors	UMOD	HGNC	ENSG00000169344				68	0	0	74	9	10.8434
ACSM3	0	genome.wustl.edu	37	16	20796389	20796389	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	16	20796389	20796389	C	T	SNP	ACSM3	ENST00000289416	human	ensembl	74_37	+1	known	missense	c.1103	p.T368M	0.985	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig	-	no_errors	ACSM3	HGNC	ENSG00000005187				133	0	0	126	34	21.25
DNAH3	0	genome.wustl.edu	37	16	21117878	21117878	+	Silent	SNP	T	T	C			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	16	21117878	21117878	T	C	SNP	DNAH3	ENST00000261383	human	ensembl	74_37	-1	known	silent	c.2217	p.K739	0.985	superfamily_P-loop_NTPase	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,superfamily_Prefoldin,smart_AAA+_ATPase	-	no_errors	DNAH3	HGNC	ENSG00000158486				55	0	0	105	19	15.3226
ERN2	0	genome.wustl.edu	37	16	23717746	23717746	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	16	23717746	23717746	G	A	SNP	ERN2	ENST00000256797	human	ensembl	74_37	-1	known	missense	c.638	p.T213M	1.000	superfamily_Quinonprotein_ADH-like_supfam,smart_PQQ_beta_propeller_repeat	pfam_KEN_dom,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Quinonprotein_ADH-like_supfam,smart_PQQ_beta_propeller_repeat,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_PUG-dom,pfscan_Prot_kinase_dom	-	no_errors	ERN2	HGNC	ENSG00000134398				12	0	0	7	2	22.2222
PRKCB	0	genome.wustl.edu	37	16	24185846	24185846	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	16	24185846	24185846	G	A	SNP	PRKCB	ENST00000303531	human	ensembl	74_37	+1	known	missense	c.1339	p.A447T	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Protein_kinase_C_a/b/g,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_C2_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_C2_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_C2_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Protein_kinase_C_a/b/g,pfscan_C2_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_dom,prints_DAG/PE-bd,prints_C2_dom	-	no_errors	PRKCB	HGNC	ENSG00000166501				83	0	0	120	20	14.2857
RBBP6	0	genome.wustl.edu	37	16	24580149	24580149	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	16	24580149	24580149	G	A	SNP	RBBP6	ENST00000319715	human	ensembl	74_37	+1	known	missense	c.2138	p.R713H	1.000	NULL	pfam_DWNN_domain,pfam_Ubox_domain,pfam_Znf_CCHC,superfamily_Znf_CCHC,smart_Znf_CCHC,smart_Znf_RING,pfscan_Znf_RING,pfscan_Znf_CCHC	-	no_errors	RBBP6	HGNC	ENSG00000122257				123	0	0	147	40	21.3904
RBBP6	0	genome.wustl.edu	37	16	24583099	24583099	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	16	24583099	24583099	A	C	SNP	RBBP6	ENST00000319715	human	ensembl	74_37	+1	known	missense	c.4712	p.K1571T	1.000	NULL	pfam_DWNN_domain,pfam_Ubox_domain,pfam_Znf_CCHC,superfamily_Znf_CCHC,smart_Znf_CCHC,smart_Znf_RING,pfscan_Znf_RING,pfscan_Znf_CCHC	-	no_errors	RBBP6	HGNC	ENSG00000122257				127	1	0.78125	145	42	22.4599
TBC1D24	0	genome.wustl.edu	37	16	2546755	2546755	+	Silent	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	16	2546755	2546755	G	A	SNP	TBC1D24	ENST00000293970	human	ensembl	74_37	+1	known	silent	c.606	p.S202	0.019	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom	pfam_TLDc,pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,smart_TLDc	-	no_errors	TBC1D24	HGNC	ENSG00000162065				58	0	0	70	16	18.6047
SRRM2	0	genome.wustl.edu	37	16	2809396	2809396	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	16	2809396	2809396	C	T	SNP	SRRM2	ENST00000301740	human	ensembl	74_37	+1	known	nonsense	c.733	p.R245*	0.991	NULL	pfam_mRNA_splic_Cwf21	-	no_errors	SRRM2	HGNC	ENSG00000167978				95	0	0	98	23	19.0083
TUFM	0	genome.wustl.edu	37	16	28855746	28855746	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	16	28855746	28855746	C	T	SNP	TUFM	ENST00000313511	human	ensembl	74_37	-1	known	missense	c.811	p.V271I	0.732	superfamily_P-loop_NTPase,superfamily_Transl_B-barrel,tigrfam_Transl_elong_EFTu/EF1A_bac/org	pfam_EF_GTP-bd_dom,pfam_Transl_elong_EFTu/EF1A_C,pfam_Transl_elong_EFTu/EF1A_2,superfamily_P-loop_NTPase,superfamily_Transl_elong_EF1A/Init_IF2_C,superfamily_Transl_B-barrel,prints_EF_GTP-bd_dom,tigrfam_Transl_elong_EFTu/EF1A_bac/org	-	no_errors	TUFM	HGNC	ENSG00000178952				99	0	0	102	21	17.0732
PAQR4	0	genome.wustl.edu	37	16	3021597	3021597	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	16	3021597	3021597	C	T	SNP	PAQR4	ENST00000318782	human	ensembl	74_37	+1	known	missense	c.470	p.S157L	0.996	pfam_HlyIII-related	pfam_HlyIII-related	-	no_errors	PAQR4	HGNC	ENSG00000162073				122	0	0	139	39	21.9101
ITGAL	0	genome.wustl.edu	37	16	30507511	30507511	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	16	30507511	30507511	G	A	SNP	ITGAL	ENST00000356798	human	ensembl	74_37	+1	known	missense	c.1597	p.G533S	0.996	pfam_FG-GAP,smart_Int_alpha_beta-p,prints_Integrin_alpha	pfam_Integrin_alpha-2,pfam_VWF_A,pfam_FG-GAP,pfam_Integrin_alpha_C_CS,smart_Int_alpha_beta-p,smart_VWF_A,prints_Integrin_alpha,pfscan_VWF_A	-	no_errors	ITGAL	HGNC	ENSG00000005844				256	1	0.389105	311	51	14.0884
ZNF764	0	genome.wustl.edu	37	16	30566999	30566999	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	16	30566999	30566999	G	A	SNP	ZNF764	ENST00000252797	human	ensembl	74_37	-1	known	missense	c.743	p.S248L	0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF764	HGNC	ENSG00000169951				11	0	0	9	4	30.7692
ZNF785	0	genome.wustl.edu	37	16	30594406	30594406	+	Silent	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	16	30594406	30594406	G	A	SNP	ZNF785	ENST00000395216	human	ensembl	74_37	-1	known	silent	c.693	p.P231	0.050	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF785	HGNC	ENSG00000197162				58	0	0	71	25	26.0417
HSD3B7	0	genome.wustl.edu	37	16	30999391	30999391	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	16	30999391	30999391	G	A	SNP	HSD3B7	ENST00000297679	human	ensembl	74_37	+1	known	missense	c.997	p.V333I	1.000	NULL	pfam_3Beta_OHSteriod_DH/Estase,pfam_Epimerase_deHydtase,pfam_Male_sterile_NAD-bd,pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,pfam_Polysac_CapD-like,pfam_dTDP_dehydrorham_reduct,pfam_NmrA	-	no_errors	HSD3B7	HGNC	ENSG00000099377				62	0	0	63	13	17.1053
TRIM72	0	genome.wustl.edu	37	16	31235536	31235536	+	Silent	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	16	31235536	31235536	G	A	SNP	TRIM72	ENST00000322122	human	ensembl	74_37	+1	known	silent	c.894	p.A298	0.978	superfamily_ConA-like_lec_gl_sf,smart_PRY,pfscan_B30.2/SPRY,prints_Butyrophylin	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl_sf,smart_Znf_RING,smart_Znf_B-box,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	TRIM72	HGNC	ENSG00000177238				47	0	0	58	17	22.6667
ZSCAN10	0	genome.wustl.edu	37	16	3139113	3139113	+	Silent	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	16	3139113	3139113	G	A	SNP	ZSCAN10	ENST00000252463	human	ensembl	74_37	-1	known	silent	c.2157	p.H719	0.845	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZSCAN10	HGNC	ENSG00000130182				20	0	0	31	11	26.1905
ZNF263	0	genome.wustl.edu	37	16	3339480	3339480	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	16	3339480	3339480	G	A	SNP	ZNF263	ENST00000219069	human	ensembl	74_37	+1	known	missense	c.974	p.R325Q	0.002	NULL	pfam_Znf_C2H2,pfam_Tscrpt_reg_SCAN,pfam_Krueppel-associated_box,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF263	HGNC	ENSG00000006194				135	0	0	172	38	18.0952
DNASE1	0	genome.wustl.edu	37	16	3712984	3712984	+	RNA	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	16	3712984	3712984	C	T	SNP	DNASE1	ENST00000575152	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	DNASE1	HGNC	ENSG00000213918				27	0	0	33	6	15.3846
HMOX2	0	genome.wustl.edu	37	16	4555534	4555534	+	Silent	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	16	4555534	4555534	G	A	SNP	HMOX2	ENST00000219700	human	ensembl	74_37	+1	known	silent	c.9	p.A3	0.000	NULL	pfam_Haem_Oase-like,superfamily_Haem_Oase-like_multi-hlx,pirsf_Haem_Oase,prints_Haem_Oase	-	no_errors	HMOX2	HGNC	ENSG00000103415				18	0	0	29	6	17.1429
DECR2	0	genome.wustl.edu	37	16	461481	461481	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	16	461481	461481	C	T	SNP	DECR2	ENST00000219481	human	ensembl	74_37	+1	known	missense	c.782	p.T261M	0.999	smart_PKS/FAS_KR,prints_DHB_DH	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,smart_PKS/FAS_KR,prints_Glc/ribitol_DH,prints_DHB_DH,prints_DH_sc/Rdtase_SDR	-	no_errors	DECR2	HGNC	ENSG00000242612				100	0	0	104	31	22.963
ITFG1	0	genome.wustl.edu	37	16	47294490	47294490	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	16	47294490	47294490	G	A	SNP	ITFG1	ENST00000320640	human	ensembl	74_37	-1	known	missense	c.1187	p.A396V	1.000	NULL	NULL	-	no_errors	ITFG1	HGNC	ENSG00000129636				182	0	0	198	41	17.1548
GLYR1	0	genome.wustl.edu	37	16	4861191	4861191	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	16	4861191	4861191	T	C	SNP	GLYR1	ENST00000321919	human	ensembl	74_37	-1	known	missense	c.1567	p.M523V	0.997	superfamily_6-PGluconate_DH_C-like	pfam_6PGDH_NADP-bd,pfam_PWWP_dom,superfamily_6-PGluconate_DH_C-like,smart_PWWP_dom,pfscan_PWWP_dom	-	no_errors	GLYR1	HGNC	ENSG00000140632				150	0	0	194	48	19.8347
ZNF423	0	genome.wustl.edu	37	16	49671946	49671946	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	16	49671946	49671946	C	T	SNP	ZNF423	ENST00000262383	human	ensembl	74_37	-1	known	missense	c.1117	p.D373N	0.998	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF423	HGNC	ENSG00000102935				57	0	0	57	12	17.3913
ZNF423	0	genome.wustl.edu	37	16	49672418	49672418	+	Silent	SNP	G	G	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	16	49672418	49672418	G	T	SNP	ZNF423	ENST00000262383	human	ensembl	74_37	-1	known	silent	c.645	p.T215	0.902	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF423	HGNC	ENSG00000102935				94	0	0	113	12	9.6
ADCY7	0	genome.wustl.edu	37	16	50325704	50325704	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	16	50325704	50325704	C	T	SNP	ADCY7	ENST00000254235	human	ensembl	74_37	+1	known	missense	c.433	p.R145W	0.360	NULL	pfam_A/G_cyclase,pfam_Adenylate_cyclase-like,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY7	HGNC	ENSG00000121281				52	0	0	60	14	18.9189
NOD2	0	genome.wustl.edu	37	16	50745284	50745284	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	16	50745284	50745284	T	C	SNP	NOD2	ENST00000300589	human	ensembl	74_37	+1	known	missense	c.1462	p.F488L	1.000	NULL	pfam_CARD,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_CARD	-	no_errors	NOD2	HGNC	ENSG00000167207				190	0	0	234	63	21.2121
CHD9	0	genome.wustl.edu	37	16	53272439	53272439	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	16	53272439	53272439	G	T	SNP	CHD9	ENST00000398510	human	ensembl	74_37	+1	known	missense	c.2818	p.G940W	1.000	pfam_SNF2_N,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_SNF2_N,pfam_BRK_domain,pfam_Chromo_domain,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,smart_BRK_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD9	HGNC	ENSG00000177200				280	0	0	284	65	18.6246
IRX6	0	genome.wustl.edu	37	16	55363164	55363164	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	16	55363164	55363164	C	T	SNP	IRX6	ENST00000290552	human	ensembl	74_37	+1	known	missense	c.1274	p.A425V	0.964	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,smart_Iroquois_homeo,pfscan_Homeobox_dom	-	no_errors	IRX6	HGNC	ENSG00000159387				107	0	0	112	38	25.3333
NLRC5	0	genome.wustl.edu	37	16	57092032	57092032	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	16	57092032	57092032	C	T	SNP	NLRC5	ENST00000262510	human	ensembl	74_37	+1	known	missense	c.3802	p.P1268S	0.731	smart_Leu-rich_rpt_RNase_inh_sub-typ	pfam_Leu-rich_rpt,superfamily_P-loop_NTPase,smart_Leu-rich_rpt_RNase_inh_sub-typ,smart_Leu-rich_rpt_Cys-con_subtyp,pfscan_NACHT_NTPase	-	no_errors	NLRC5	HGNC	ENSG00000140853				11	0	0	12	5	29.4118
CDH8	0	genome.wustl.edu	37	16	61689517	61689517	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	16	61689517	61689517	C	T	SNP	CDH8	ENST00000577390	human	ensembl	74_37	-1	known	missense	c.1763	p.S588N	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH8	HGNC	ENSG00000150394				85	0	0	92	29	23.9669
EXOC3L1	0	genome.wustl.edu	37	16	67221273	67221273	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	16	67221273	67221273	G	T	SNP	EXOC3L1	ENST00000314586	human	ensembl	74_37	-1	known	missense	c.895	p.P299T	1.000	pfam_Sec6	pfam_Sec6	-	no_errors	EXOC3L1	HGNC	ENSG00000179044				42	0	0	67	15	18.2927
AGRP	0	genome.wustl.edu	37	16	67517002	67517002	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	16	67517002	67517002	G	A	SNP	AGRP	ENST00000290953	human	ensembl	74_37	-1	known	missense	c.142	p.R48W	0.000	pfam_Agouti,smart_Agouti	pfam_Agouti,superfamily_Agouti_dom,smart_Agouti,pfscan_Agouti_dom	-	no_errors	AGRP	HGNC	ENSG00000159723				133	0	0	167	38	18.5366
RLTPR	0	genome.wustl.edu	37	16	67683500	67683500	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	16	67683500	67683500	C	A	SNP	RLTPR	ENST00000334583	human	ensembl	74_37	+1	known	missense	c.1897	p.L633M	0.988	smart_Leu-rich_rpt_RNase_inh_sub-typ	smart_Leu-rich_rpt_RNase_inh_sub-typ	-	no_errors	RLTPR	HGNC	ENSG00000159753				29	0	0	42	15	26.3158
GFOD2	0	genome.wustl.edu	37	16	67709348	67709348	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	16	67709348	67709348	C	A	SNP	GFOD2	ENST00000268797	human	ensembl	74_37	-1	known	nonsense	c.868	p.G290*	0.946	NULL	pfam_Oxidoreductase_N	-	no_errors	GFOD2	HGNC	ENSG00000141098				79	0	0	98	30	23.4375
NFATC3	0	genome.wustl.edu	37	16	68191771	68191771	+	Splice_Site	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	16	68191771	68191771	G	A	SNP	NFATC3	ENST00000346183	human	ensembl	74_37	+1	known	splice_site	c.1402-1	e4-1	1.000	-	-	-	no_errors	NFATC3	HGNC	ENSG00000072736				39	0	0	64	8	11.1111
NOB1	0	genome.wustl.edu	37	16	69786254	69786254	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	16	69786254	69786254	T	C	SNP	NOB1	ENST00000268802	human	ensembl	74_37	-1	known	missense	c.217	p.T73A	1.000	smart_PIN_dom,pirsf_D-site_20S_pre-rRNA_nuclease	pfam_NOB1_Zn-bd,smart_PIN_dom,pirsf_D-site_20S_pre-rRNA_nuclease	-	no_errors	NOB1	HGNC	ENSG00000141101				147	1	0.675676	161	42	20.6897
WDR24	0	genome.wustl.edu	37	16	735692	735692	+	Silent	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	16	735692	735692	C	T	SNP	WDR24	ENST00000248142	human	ensembl	74_37	-1	known	silent	c.2055	p.P685	0.069	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR24	HGNC	ENSG00000127580				114	0	0	140	22	13.5802
CDYL2	0	genome.wustl.edu	37	16	80666968	80666968	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	16	80666968	80666968	G	A	SNP	CDYL2	ENST00000570137	human	ensembl	74_37	-1	known	missense	c.782	p.T261M	1.000	NULL	pfam_Crotonase_core_superfam,pfam_Chromo_domain,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,pfscan_Chromo_domain/shadow	-	no_errors	CDYL2	HGNC	ENSG00000166446				137	0	0	183	36	16.4384
CHTF18	0	genome.wustl.edu	37	16	840569	840569	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	16	840569	840569	C	A	SNP	CHTF18	ENST00000317063	human	ensembl	74_37	+1	known	missense	c.1382	p.P461H	0.066	NULL	pfam_ATPase_AAA_core,pfam_ATPase_dyneun-rel_AAA,pfam_DNA_helicase_Holl-junc_RuvB_N,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	CHTF18	HGNC	ENSG00000127586				10	0	0	13	3	18.75
JPH3	0	genome.wustl.edu	37	16	87636864	87636864	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	16	87636864	87636864	G	A	SNP	JPH3	ENST00000284262	human	ensembl	74_37	+1	known	missense	c.112	p.E38K	1.000	pirsf_Junctophilin,smart_MORN	pirsf_Junctophilin,pfam_MORN,smart_MORN	-	no_errors	JPH3	HGNC	ENSG00000154118				106	1	0.934579	104	23	18.1102
BANP	0	genome.wustl.edu	37	16	88105722	88105722	+	Silent	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	16	88105722	88105722	G	A	SNP	BANP	ENST00000286122	human	ensembl	74_37	+1	known	silent	c.1392	p.A464	0.000	NULL	pfam_BEN_domain	-	no_errors	BANP	HGNC	ENSG00000172530				17	0	0	21	5	19.2308
ZC3H18	0	genome.wustl.edu	37	16	88677712	88677712	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	16	88677712	88677712	C	T	SNP	ZC3H18	ENST00000301011	human	ensembl	74_37	+1	known	missense	c.1243	p.R415C	0.998	NULL	smart_Znf_CCCH	-	no_errors	ZC3H18	HGNC	ENSG00000158545				16	0	0	32	2	5.88235
APRT	0	genome.wustl.edu	37	16	88876484	88876484	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	16	88876484	88876484	T	C	SNP	APRT	ENST00000378364	human	ensembl	74_37	-1	known	missense	c.394	p.T132A	1.000	pfam_PRibTrfase_dom,tigrfam_Ade_phspho_trans	pfam_PRibTrfase_dom,tigrfam_Ade_phspho_trans	-	no_errors	APRT	HGNC	ENSG00000198931				210	0	0	275	68	19.8251
ANKRD11	0	genome.wustl.edu	37	16	89352563	89352563	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	16	89352563	89352563	T	C	SNP	ANKRD11	ENST00000301030	human	ensembl	74_37	-1	known	missense	c.776	p.N259S	1.000	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD11	HGNC	ENSG00000167522				193	1	0.515464	253	54	17.5896
MYH3	0	genome.wustl.edu	37	17	10546233	10546233	+	Silent	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	17	10546233	10546233	C	T	SNP	MYH3	ENST00000226209	human	ensembl	74_37	-1	known	silent	c.1491	p.L497	1.000	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH3	HGNC	ENSG00000109063				211	0	0	265	65	19.697
ARHGAP44	0	genome.wustl.edu	37	17	12893457	12893457	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	17	12893457	12893457	C	T	SNP	ARHGAP44	ENST00000379672	human	ensembl	74_37	+1	known	missense	c.2426	p.S809L	0.966	NULL	pfam_BAR_dom,pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_BAR_dom,smart_RhoGAP_dom,pfscan_BAR_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP44	HGNC	ENSG00000006740				52	0	0	69	16	18.8235
COX10	0	genome.wustl.edu	37	17	14110236	14110236	+	Silent	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	17	14110236	14110236	G	A	SNP	COX10	ENST00000261643	human	ensembl	74_37	+1	known	silent	c.1038	p.S346	0.441	pfam_UbiA_prenyltransferase,pirsf_Protohaem_IX_farnesylTrfase_mt,tigrfam_Protohaem_IX_farnesylTrfase	pfam_UbiA_prenyltransferase,pirsf_Protohaem_IX_farnesylTrfase_mt,tigrfam_Protohaem_IX_farnesylTrfase	-	no_errors	COX10	HGNC	ENSG00000006695				99	0	0	145	41	22.043
TVP23C	0	genome.wustl.edu	37	17	15441469	15441469	+	Splice_Site	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	17	15441469	15441469	C	T	SNP	TVP23C	ENST00000523573	human	ensembl	74_37	-1	known	splice_site	c.162-2	e5-2	0.998	-	-	-	no_errors	TVP23C	HGNC	ENSG00000175106				136	0	0	168	41	19.6172
NCOR1	0	genome.wustl.edu	37	17	15971388	15971388	+	Silent	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	17	15971388	15971388	G	A	SNP	NCOR1	ENST00000268712	human	ensembl	74_37	-1	known	silent	c.4561	p.L1521	0.998	NULL	pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	NCOR1	HGNC	ENSG00000141027				36	0	0	47	10	17.5439
NCOR1	0	genome.wustl.edu	37	17	16068428	16068428	+	Silent	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	17	16068428	16068428	C	T	SNP	NCOR1	ENST00000268712	human	ensembl	74_37	-1	known	silent	c.483	p.S161	1.000	NULL	pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	NCOR1	HGNC	ENSG00000141027				294	0	0	324	29	8.2153
RAI1	0	genome.wustl.edu	37	17	17699435	17699435	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	17	17699435	17699435	G	A	SNP	RAI1	ENST00000353383	human	ensembl	74_37	+1	known	missense	c.3173	p.R1058H	1.000	NULL	smart_Znf_PHD	-	no_errors	RAI1	HGNC	ENSG00000108557				16	0	0	6	2	25
HIC1	0	genome.wustl.edu	37	17	1961719	1961719	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	17	1961719	1961719	G	A	SNP	HIC1	ENST00000322941	human	ensembl	74_37	+1	known	missense	c.1792	p.G598S	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_BTB_POZ,pfam_Znf_C2H2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	HIC1	HGNC	ENSG00000177374				17	0	0	18	12	40
KCNJ12	0	genome.wustl.edu	37	17	21318826	21318826	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	17	21318826	21318826	G	A	SNP	KCNJ12	ENST00000331718	human	ensembl	74_37	+1	known	missense	c.172	p.A58T	0.993	pfam_K_chnl_inward-rec_Kir,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir2.2	pfam_K_chnl_inward-rec_Kir,pfam_K_chnl_inward-rec_Kir_N,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir2.2	-	no_errors	KCNJ12	HGNC	ENSG00000184185				73	0	0	102	8	7.27273
PAFAH1B1	0	genome.wustl.edu	37	17	2579901	2579901	+	Splice_Site	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	17	2579901	2579901	G	A	SNP	PAFAH1B1	ENST00000397195	human	ensembl	74_37	+1	known	splice_site	c.1002+1	e8+1	1.000	-	-	-	no_errors	PAFAH1B1	HGNC	ENSG00000007168				116	0	0	118	31	20.8054
TNFAIP1	0	genome.wustl.edu	37	17	26669336	26669336	+	Silent	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	17	26669336	26669336	C	T	SNP	TNFAIP1	ENST00000226225	human	ensembl	74_37	+1	known	silent	c.582	p.N194	0.153	NULL	pfam_T1-type_BTB,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like	-	no_errors	TNFAIP1	HGNC	ENSG00000109079				41	0	0	54	22	28.9474
KIAA0100	0	genome.wustl.edu	37	17	26951282	26951282	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	17	26951282	26951282	C	T	SNP	KIAA0100	ENST00000528896	human	ensembl	74_37	-1	known	missense	c.4721	p.R1574Q	1.000	NULL	pfam_FMP27_C,pfam_FMP27_N,pfam_FMP27_GFWDK_dom	-	no_errors	KIAA0100	HGNC	ENSG00000007202				140	0	0	143	31	17.8161
NEK8	0	genome.wustl.edu	37	17	27064633	27064633	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	17	27064633	27064633	C	A	SNP	NEK8	ENST00000543014	human	ensembl	74_37	+1	known	missense	c.928	p.L310I	0.000	superfamily_Kinase-like_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	NEK8	HGNC	ENSG00000160602				65	0	0	59	19	24.359
LHX1	0	genome.wustl.edu	37	17	35298059	35298059	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	17	35298059	35298059	C	T	SNP	LHX1	ENST00000254457	human	ensembl	74_37	+1	known	missense	c.550	p.R184C	1.000	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	pfam_Znf_LIM,pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Znf_LIM,smart_Homeobox_dom,pfscan_Znf_LIM,pfscan_Homeobox_dom	-	no_errors	LHX1	HGNC	ENSG00000132130				70	0	0	86	24	21.8182
MLLT6	0	genome.wustl.edu	37	17	36869018	36869018	+	Silent	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	17	36869018	36869018	G	A	SNP	MLLT6	ENST00000325718	human	ensembl	74_37	+1	known	silent	c.795	p.P265	0.870	NULL	superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	MLLT6	HGNC	ENSG00000108292				147	0	0	157	28	15.1351
CDK12	0	genome.wustl.edu	37	17	37686960	37686960	+	Silent	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	17	37686960	37686960	C	T	SNP	CDK12	ENST00000447079	human	ensembl	74_37	+1	known	silent	c.3864	p.S1288	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	CDK12	HGNC	ENSG00000167258				307	0	0	301	76	20.1592
ERBB2	0	genome.wustl.edu	37	17	37864636	37864636	+	Silent	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	17	37864636	37864636	G	A	SNP	ERBB2	ENST00000269571	human	ensembl	74_37	+1	known	silent	c.288	p.L96	1.000	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_EGF_rcpt_L	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Prot_kinase_dom,pfam_Furin-like_Cys-rich_dom,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt_N_dom,smart_Furin_repeat,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	ERBB2	HGNC	ENSG00000141736				159	0	0	195	44	18.41
ERBB2	0	genome.wustl.edu	37	17	37868208	37868208	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	17	37868208	37868208	C	T	SNP	ERBB2	ENST00000269571	human	ensembl	74_37	+1	known	missense	c.929	p.S310F	1.000	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Furin-like_Cys-rich_dom,superfamily_Growth_fac_rcpt_N_dom	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Prot_kinase_dom,pfam_Furin-like_Cys-rich_dom,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt_N_dom,smart_Furin_repeat,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	ERBB2	HGNC	ENSG00000141736				412	0	0	415	100	19.4175
KRT31	0	genome.wustl.edu	37	17	39550390	39550390	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	17	39550390	39550390	C	T	SNP	KRT31	ENST00000251645	human	ensembl	74_37	-1	known	missense	c.1129	p.A377T	0.503	NULL	pfam_IF,superfamily_Prefoldin,prints_Keratin_I	-	no_errors	KRT31	HGNC	ENSG00000094796				125	0	0	110	24	17.9104
KRT32	0	genome.wustl.edu	37	17	39623344	39623344	+	Silent	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	17	39623344	39623344	G	A	SNP	KRT32	ENST00000225899	human	ensembl	74_37	-1	known	silent	c.234	p.S78	0.044	NULL	pfam_IF,superfamily_Prefoldin,prints_Keratin_I	-	no_errors	KRT32	HGNC	ENSG00000108759				97	0	0	116	33	22.1477
CNP	0	genome.wustl.edu	37	17	40125660	40125660	+	Silent	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	17	40125660	40125660	C	T	SNP	CNP	ENST00000393892	human	ensembl	74_37	+1	known	silent	c.984	p.R328	0.579	pfam_CNPase,superfamily_RNA_ligase/cNuc_Pdiesterase,pirsf_CNPase	pfam_CNPase,pfam_Zeta_toxin_domain,superfamily_RNA_ligase/cNuc_Pdiesterase,superfamily_P-loop_NTPase,pirsf_CNPase	-	no_errors	CNP	HGNC	ENSG00000173786				108	0	0	155	19	10.9195
TUBG2	0	genome.wustl.edu	37	17	40815027	40815027	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	17	40815027	40815027	G	A	SNP	TUBG2	ENST00000251412	human	ensembl	74_37	+1	known	missense	c.436	p.G146S	1.000	pfam_Tubulin_FtsZ_GTPase,superfamily_Tubulin_FtsZ_GTPase,smart_Tubulin_FtsZ_GTPase,prints_Tubulin	pfam_Tubulin_FtsZ_GTPase,pfam_Tubulin/FtsZ_2-layer-sand-dom,pfam_Misato_II_tubulin-like,superfamily_Tubulin_FtsZ_GTPase,superfamily_Tub_FtsZ_C,smart_Tubulin_FtsZ_GTPase,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Gamma_tubulin,prints_Tubulin,prints_Epsilon_tubulin,prints_Delta_tubulin,prints_Beta_tubulin,prints_Alpha_tubulin	-	no_errors	TUBG2	HGNC	ENSG00000037042				126	0	0	185	24	11.4833
WNK4	0	genome.wustl.edu	37	17	40939916	40939916	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	17	40939916	40939916	C	T	SNP	WNK4	ENST00000246914	human	ensembl	74_37	+1	known	missense	c.1862	p.S621L	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Kinase_OSR1/WNK_CCT,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	WNK4	HGNC	ENSG00000126562				119	0	0	123	39	24.0741
TMUB2	0	genome.wustl.edu	37	17	42267869	42267869	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	17	42267869	42267869	C	T	SNP	TMUB2	ENST00000589184	human	ensembl	74_37	+1	putative	nonsense	c.46	p.Q16*	1.000	NULL	NULL	-	no_errors	TMUB2	HGNC	ENSG00000168591				57	0	0	65	19	22.619
KANSL1	0	genome.wustl.edu	37	17	44108963	44108963	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	17	44108963	44108963	C	T	SNP	KANSL1	ENST00000262419	human	ensembl	74_37	-1	known	missense	c.3197	p.R1066H	1.000	NULL	NULL	-	no_errors	KANSL1	HGNC	ENSG00000120071				35	0	0	55	9	14.0625
MYBBP1A	0	genome.wustl.edu	37	17	4442961	4442961	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	17	4442961	4442961	C	T	SNP	MYBBP1A	ENST00000381556	human	ensembl	74_37	-1	known	missense	c.3736	p.A1246T	0.967	NULL	pfam_DNA_pol_V,superfamily_ARM-type_fold	-	no_errors	MYBBP1A	HGNC	ENSG00000132382				320	0	0	325	85	20.7317
TBKBP1	0	genome.wustl.edu	37	17	45773500	45773500	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	17	45773500	45773500	G	A	SNP	TBKBP1	ENST00000361722	human	ensembl	74_37	+1	known	missense	c.22	p.D8N	0.998	NULL	NULL	-	no_errors	TBKBP1	HGNC	ENSG00000198933				65	0	0	79	16	16.8421
PLD2	0	genome.wustl.edu	37	17	4720531	4720531	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	17	4720531	4720531	G	A	SNP	PLD2	ENST00000263088	human	ensembl	74_37	+1	known	missense	c.1792	p.G598R	0.996	pirsf_PLipase_D_euk	pfam_Phox,pfam_PLipase_D/transphosphatidylase,superfamily_Phox,smart_Phox,smart_Pleckstrin_homology,smart_PLipase_D/transphosphatidylase,pirsf_PLipase_D_euk,pfscan_Phox,pfscan_PLipase_D/transphosphatidylase	-	no_errors	PLD2	HGNC	ENSG00000129219				249	1	0.4	291	69	19.1667
ZNF652	0	genome.wustl.edu	37	17	47394293	47394293	+	Silent	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	17	47394293	47394293	G	A	SNP	ZNF652	ENST00000362063	human	ensembl	74_37	-1	known	silent	c.795	p.N265	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF652	HGNC	ENSG00000198740				198	1	0.502513	205	38	15.6379
ENO3	0	genome.wustl.edu	37	17	4860322	4860322	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	17	4860322	4860322	C	T	SNP	ENO3	ENST00000323997	human	ensembl	74_37	+1	known	missense	c.1285	p.R429C	1.000	pfam_Enolase_C,pirsf_Enolase	pfam_Enolase_C,pfam_Enolase_N,pfam_MeAsp_NH4-lyase_C,pirsf_Enolase,prints_Enolase,tigrfam_Enolase	-	no_errors	ENO3	HGNC	ENSG00000108515				184	0	0	244	47	16.1512
CAMTA2	0	genome.wustl.edu	37	17	4889556	4889556	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	17	4889556	4889556	G	T	SNP	CAMTA2	ENST00000414043	human	ensembl	74_37	-1	known	missense	c.31	p.L11I	1.000	NULL	pfam_CG-1_dom,pfam_IPT,pfam_IQ_motif_EF-hand-BS,superfamily_Ig_E-set,superfamily_Ankyrin_rpt-contain_dom,superfamily_P-loop_NTPase,pfscan_Ankyrin_rpt-contain_dom,pfscan_IQ_motif_EF-hand-BS	-	no_errors	CAMTA2	HGNC	ENSG00000108509				34	0	0	48	17	26.1538
WFIKKN2	0	genome.wustl.edu	37	17	48917876	48917876	+	Silent	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	17	48917876	48917876	C	T	SNP	WFIKKN2	ENST00000311378	human	ensembl	74_37	+1	known	silent	c.1227	p.G409	0.548	pfam_Prot_inh_Kunz-m,superfamily_Prot_inh_Kunz-m,smart_Prot_inh_Kunz-m,pfscan_Prot_inh_Kunz-m	pfam_Prot_inh_Kunz-m,pfam_Ig_I-set,pfam_Netrin_module_non-TIMP,pfam_WAP-type_4-diS_core,pfam_Kazal_dom,pfam_Ig_V-set,superfamily_TIMP-like_OB-fold,superfamily_Prot_inh_Kunz-m,superfamily_WAP-type_4-diS_core,smart_WAP-type_4-diS_core,smart_Ig_sub,smart_Ig_sub2,smart_Prot_inh_Kunz-m,pfscan_Netrin_domain,pfscan_Prot_inh_Kunz-m,pfscan_Ig-like_dom,prints_Prot_inh_Kunz-m	-	no_errors	WFIKKN2	HGNC	ENSG00000173714				91	0	0	109	24	18.0451
SLC52A1	0	genome.wustl.edu	37	17	4937566	4937566	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	17	4937566	4937566	G	A	SNP	SLC52A1	ENST00000254853	human	ensembl	74_37	-1	known	missense	c.218	p.P73L	0.963	NULL	pfam_Endogenous_retrovirus_rcpt	-	no_errors	SLC52A1	HGNC	ENSG00000132517				96	0	0	125	32	20.3822
USP6	0	genome.wustl.edu	37	17	5042569	5042569	+	Silent	SNP	C	C	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	17	5042569	5042569	C	A	SNP	USP6	ENST00000250066	human	ensembl	74_37	+1	known	silent	c.1098	p.S366	0.016	NULL	pfam_Peptidase_C19/C67,pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom,pfscan_Peptidase_C19/C67	-	no_errors	USP6	HGNC	ENSG00000129204				128	0	0	177	30	14.4928
ANKFN1	0	genome.wustl.edu	37	17	54526505	54526505	+	Silent	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	17	54526505	54526505	C	T	SNP	ANKFN1	ENST00000318698	human	ensembl	74_37	+1	known	silent	c.1174	p.L392	1.000	NULL	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Fibronectin_type3,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Fibronectin_type3	-	no_errors	ANKFN1	HGNC	ENSG00000153930				124	0	0	95	21	18.1034
EPX	0	genome.wustl.edu	37	17	56274340	56274340	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	17	56274340	56274340	G	A	SNP	EPX	ENST00000225371	human	ensembl	74_37	+1	known	missense	c.842	p.C281Y	1.000	pfam_Haem_peroxidase_animal,superfamily_Haem_peroxidase,pfscan_Haem_peroxidase_animal	pfam_Haem_peroxidase_animal,superfamily_Haem_peroxidase,pfscan_Haem_peroxidase_animal,prints_Haem_peroxidase_animal_subgr	-	no_errors	EPX	HGNC	ENSG00000121053				199	1	0.5	256	47	15.5116
BZRAP1	0	genome.wustl.edu	37	17	56399703	56399703	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	17	56399703	56399703	C	T	SNP	BZRAP1	ENST00000355701	human	ensembl	74_37	-1	known	missense	c.1388	p.R463Q	1.000	NULL	pfam_SH3_2,superfamily_SH3_domain,superfamily_Fibronectin_type3,smart_SH3_domain,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_SH3_domain	-	no_errors	BZRAP1	HGNC	ENSG00000005379				130	0	0	173	19	9.89583
TANC2	0	genome.wustl.edu	37	17	61497863	61497863	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	17	61497863	61497863	C	T	SNP	TANC2	ENST00000424789	human	ensembl	74_37	+1	known	missense	c.4520	p.P1507L	1.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,superfamily_P-loop_NTPase,smart_Ankyrin_rpt,smart_TPR_repeat,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_TPR_repeat,pfscan_TPR-contain_dom,prints_Ankyrin_rpt	-	no_errors	TANC2	HGNC	ENSG00000170921				84	0	0	96	22	18.6441
PLEKHM1P	0	genome.wustl.edu	37	17	62818141	62818141	+	RNA	SNP	T	T	C			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	17	62818141	62818141	T	C	SNP	PLEKHM1P	ENST00000397718	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.158	-	-	-	no_errors	PLEKHM1P	HGNC	ENSG00000214176				54	0	0	80	19	19.1919
CDC42EP4	0	genome.wustl.edu	37	17	71282535	71282535	+	Silent	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	17	71282535	71282535	G	A	SNP	CDC42EP4	ENST00000335793	human	ensembl	74_37	-1	known	silent	c.105	p.R35	0.996	pfam_CRIB_dom,smart_CRIB_dom,pfscan_CRIB_dom	pfam_CRIB_dom,smart_CRIB_dom,pfscan_CRIB_dom	-	no_errors	CDC42EP4	HGNC	ENSG00000179604				68	0	0	80	16	16.6667
NEURL4	0	genome.wustl.edu	37	17	7224553	7224553	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	17	7224553	7224553	C	T	SNP	NEURL4	ENST00000399464	human	ensembl	74_37	-1	known	missense	c.3238	p.G1080S	0.995	pfscan_Neu_Z	pfam_Neu_Z,superfamily_ConA-like_lec_gl_sf,smart_Neu_Z,pfscan_Neu_Z	-	no_errors	NEURL4	HGNC	ENSG00000215041				97	0	0	110	24	17.9104
BTBD17	0	genome.wustl.edu	37	17	72353578	72353578	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	17	72353578	72353578	G	A	SNP	BTBD17	ENST00000375366	human	ensembl	74_37	-1	known	missense	c.655	p.R219C	1.000	pfam_BACK,smart_BACK	pfam_BACK,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,pfscan_BTB/POZ-like	-	no_errors	BTBD17	HGNC	ENSG00000204347				22	0	0	11	4	26.6667
KIAA0195	0	genome.wustl.edu	37	17	73487842	73487842	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	17	73487842	73487842	G	A	SNP	KIAA0195	ENST00000314256	human	ensembl	74_37	+1	known	missense	c.1457	p.R486H	0.017	NULL	pfam_ATPase_P-typ_cation-transptr_C	-	no_errors	KIAA0195	HGNC	ENSG00000177728				113	0	0	114	27	19.1489
GALK1	0	genome.wustl.edu	37	17	73761135	73761135	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	17	73761135	73761135	G	A	SNP	GALK1	ENST00000437911	human	ensembl	74_37	-1	known	missense	c.173	p.P58L	1.000	pfam_GalKase_gal-bd,superfamily_Ribosomal_S5_D2-typ_fold,pirsf_Galactokinase,tigrfam_Galactokinase	pfam_GalKase_gal-bd,pfam_GHMP_kinase_C_dom,pfam_GHMP_kinase_N_dom,superfamily_Ribosomal_S5_D2-typ_fold,pirsf_Galactokinase,prints_Mevalonate/galactokinase,prints_Galactokinase,prints_Galkinase,tigrfam_Galactokinase	-	no_errors	GALK1	HGNC	ENSG00000108479				9	0	0	21	6	22.2222
EVPL	0	genome.wustl.edu	37	17	74005204	74005204	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	17	74005204	74005204	A	G	SNP	EVPL	ENST00000301607	human	ensembl	74_37	-1	known	missense	c.4082	p.L1361P	1.000	NULL	pfam_Plectin_repeat,superfamily_Ferritin-like_SF,smart_Spectrin/alpha-actinin,smart_Plectin_repeat	-	no_errors	EVPL	HGNC	ENSG00000167880				183	0	0	239	59	19.7987
JMJD6	0	genome.wustl.edu	37	17	74714772	74714772	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	17	74714772	74714772	G	A	SNP	JMJD6	ENST00000585429	human	ensembl	74_37	-1	putative	missense	c.1112	p.A371V	0.005	NULL	pfam_JmjC_dom,smart_JmjC_dom,pfscan_JmjC_dom	-	no_errors	JMJD6	HGNC	ENSG00000070495				56	0	0	73	6	7.59494
MGAT5B	0	genome.wustl.edu	37	17	74936837	74936837	+	Silent	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	17	74936837	74936837	G	A	SNP	MGAT5B	ENST00000428789	human	ensembl	74_37	+1	known	silent	c.1782	p.A594	0.002	NULL	superfamily_PyrdxlP-dep_Trfase	-	no_errors	MGAT5B	HGNC	ENSG00000167889				127	0	0	134	41	23.4286
SEC14L1	0	genome.wustl.edu	37	17	75196655	75196655	+	Silent	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	17	75196655	75196655	G	A	SNP	SEC14L1	ENST00000392476	human	ensembl	74_37	+1	known	silent	c.909	p.T303	0.003	superfamily_CRAL/TRIO_N_dom	pfam_PRELI/MSF1,pfam_CRAL-TRIO_dom,pfam_CRAL/TRIO_N_dom,superfamily_CRAL-TRIO_dom,superfamily_CRAL/TRIO_N_dom,superfamily_GOLD,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom,pfscan_GOLD,pfscan_PRELI/MSF1	-	no_errors	SEC14L1	HGNC	ENSG00000129657				238	0	0	240	66	21.5686
ENGASE	0	genome.wustl.edu	37	17	77078044	77078044	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	17	77078044	77078044	C	T	SNP	ENGASE	ENST00000579016	human	ensembl	74_37	+1	known	missense	c.937	p.R313W	0.808	pfam_Glyco_hydro_85	pfam_Glyco_hydro_85,pfscan_BRCT_dom	-	no_errors	ENGASE	HGNC	ENSG00000167280				219	0	0	223	52	18.9091
CCDC40	0	genome.wustl.edu	37	17	78073485	78073485	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	17	78073485	78073485	G	A	SNP	CCDC40	ENST00000397545	human	ensembl	74_37	+1	known	missense	c.3340	p.V1114M	0.140	NULL	pfam_E3_ubiquit_lig_BRE1	-	no_errors	CCDC40	HGNC	ENSG00000141519				70	0	0	91	21	18.75
CHMP6	0	genome.wustl.edu	37	17	78972925	78972925	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	17	78972925	78972925	G	T	SNP	CHMP6	ENST00000325167	human	ensembl	74_37	+1	known	missense	c.578	p.R193M	0.932	NULL	pfam_Snf7	-	no_errors	CHMP6	HGNC	ENSG00000176108				135	0	0	180	21	10.4478
GUCY2D	0	genome.wustl.edu	37	17	7915631	7915631	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	17	7915631	7915631	G	C	SNP	GUCY2D	ENST00000254854	human	ensembl	74_37	+1	known	missense	c.1919	p.W640S	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Tyr_kinase_cat_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_dom	pfam_A/G_cyclase,pfam_ANF_lig-bd_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Haem_no_assoc-bd,superfamily_Peripla_BP_I,superfamily_A/G_cyclase,superfamily_Kinase-like_dom,smart_Tyr_kinase_cat_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_A/G_cyclase,pfscan_Prot_kinase_dom,pfscan_A/G_cyclase,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	GUCY2D	HGNC	ENSG00000132518				88	0	0	149	31	17.2222
AZI1	0	genome.wustl.edu	37	17	79164825	79164825	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	17	79164825	79164825	C	T	SNP	AZI1	ENST00000269392	human	ensembl	74_37	-1	known	missense	c.2834	p.R945Q	1.000	superfamily_t-SNARE	superfamily_t-SNARE	-	no_errors	AZI1	HGNC	ENSG00000141577				92	0	0	127	41	24.4048
GPS1	0	genome.wustl.edu	37	17	80014563	80014563	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	17	80014563	80014563	C	T	SNP	GPS1	ENST00000355130	human	ensembl	74_37	+1	known	missense	c.1295	p.T432M	0.999	pfam_PCI_dom,smart_PCI_dom	pfam_26S_proteasome_reg_su-Rpn7,pfam_PCI_dom,smart_PCI_dom	-	no_errors	GPS1	HGNC	ENSG00000169727				24	0	0	37	11	22.9167
ARHGEF15	0	genome.wustl.edu	37	17	8224243	8224243	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	17	8224243	8224243	C	T	SNP	ARHGEF15	ENST00000361926	human	ensembl	74_37	+1	known	missense	c.2458	p.R820C	1.000	NULL	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_DH-domain	-	no_errors	ARHGEF15	HGNC	ENSG00000198844				135	1	0.735294	153	37	19.4737
MYH10	0	genome.wustl.edu	37	17	8409746	8409746	+	Silent	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	17	8409746	8409746	G	A	SNP	MYH10	ENST00000396239	human	ensembl	74_37	-1	known	silent	c.3246	p.D1082	0.051	superfamily_HR1_rho-bd	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,superfamily_Prefoldin,superfamily_HR1_rho-bd,superfamily_UBA-like,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH10	HGNC	ENSG00000133026				137	1	0.724638	173	42	19.5349
MYH10	0	genome.wustl.edu	37	17	8508243	8508243	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	17	8508243	8508243	A	C	SNP	MYH10	ENST00000396239	human	ensembl	74_37	-1	known	missense	c.403	p.S135A	1.000	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,superfamily_Prefoldin,superfamily_HR1_rho-bd,superfamily_UBA-like,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH10	HGNC	ENSG00000133026				111	0	0	82	26	24.0741
RPH3AL	0	genome.wustl.edu	37	17	97063	97063	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	17	97063	97063	G	A	SNP	RPH3AL	ENST00000331302	human	ensembl	74_37	-1	known	missense	c.452	p.S151L	0.988	superfamily_Znf_FYVE_PHD,pfscan_Znf_FYVE-typ	pfam_Znf_FYVE-typ,superfamily_Znf_FYVE_PHD,pfscan_Znf_FYVE-typ,pfscan_Znf_FYVE-rel	-	no_errors	RPH3AL	HGNC	ENSG00000181031				36	0	0	45	15	25
ENSG00000266954	0	genome.wustl.edu	37	18	13645087	13645087	+	RNA	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	18	13645087	13645087	G	A	SNP	ENSG00000266954	ENST00000588397	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RP11-701H16.4	Clone_based_vega_gene	ENSG00000266954				107	0	0	93	24	20.5128
ANKRD30B	0	genome.wustl.edu	37	18	14757831	14757831	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	18	14757831	14757831	C	A	SNP	ANKRD30B	ENST00000358984	human	ensembl	74_37	+1	known	missense	c.635	p.A212D	0.067	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD30B	HGNC	ENSG00000180777				41	0	0	55	4	6.77966
RIOK3	0	genome.wustl.edu	37	18	21046208	21046208	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	18	21046208	21046208	C	T	SNP	RIOK3	ENST00000339486	human	ensembl	74_37	+1	known	missense	c.655	p.R219C	1.000	pirsf_Ser/Thr_kinase_Rio3	pfam_RIO-like_kinase,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_RIO_kinase,pirsf_Ser/Thr_kinase_Rio3	-	no_errors	RIOK3	HGNC	ENSG00000101782				64	0	0	91	19	17.2727
ZNF521	0	genome.wustl.edu	37	18	22804764	22804764	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	18	22804764	22804764	T	C	SNP	ZNF521	ENST00000361524	human	ensembl	74_37	-1	known	missense	c.3118	p.T1040A	1.000	smart_Znf_C2H2-like	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF521	HGNC	ENSG00000198795				65	0	0	100	23	18.6992
DSG1	0	genome.wustl.edu	37	18	28919904	28919904	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	18	28919904	28919904	G	A	SNP	DSG1	ENST00000257192	human	ensembl	74_37	+1	known	missense	c.1603	p.G535R	0.000	NULL	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Desmoglein,prints_Cadherin,prints_Desmosomal_cadherin	-	no_errors	DSG1	HGNC	ENSG00000134760				143	0	0	183	38	17.1946
DSG3	0	genome.wustl.edu	37	18	29040811	29040811	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	18	29040811	29040811	C	T	SNP	DSG3	ENST00000257189	human	ensembl	74_37	+1	known	missense	c.700	p.R234C	0.080	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin,prints_Desmoglein,prints_Desmosomal_cadherin	-	no_errors	DSG3	HGNC	ENSG00000134757				83	0	0	76	17	18.2796
LPIN2	0	genome.wustl.edu	37	18	2922171	2922171	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	18	2922171	2922171	G	A	SNP	LPIN2	ENST00000261596	human	ensembl	74_37	-1	known	missense	c.2201	p.S734L	1.000	pfam_LNS2,superfamily_HAD-like_dom,smart_LNS2	pfam_LNS2,pfam_Lipin_N,superfamily_HAD-like_dom,smart_LNS2	-	no_errors	LPIN2	HGNC	ENSG00000101577				50	0	0	63	20	24.0964
GAREM	0	genome.wustl.edu	37	18	29972872	29972872	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	18	29972872	29972872	G	A	SNP	GAREM	ENST00000269209	human	ensembl	74_37	-1	known	missense	c.248	p.P83L	1.000	NULL	superfamily_SAM/pointed	-	no_errors	GAREM	HGNC	ENSG00000141441				110	0	0	127	24	15.894
CELF4	0	genome.wustl.edu	37	18	34854793	34854793	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	18	34854793	34854793	G	A	SNP	CELF4	ENST00000420428	human	ensembl	74_37	-1	known	missense	c.632	p.A211V	0.969	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	CELF4	HGNC	ENSG00000101489				11	0	0	18	5	21.7391
DLGAP1-AS1	0	genome.wustl.edu	37	18	3597045	3597045	+	RNA	SNP	T	T	C			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	18	3597045	3597045	T	C	SNP	DLGAP1-AS1	ENST00000317114	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	DLGAP1-AS1	HGNC	ENSG00000177337				63	0	0	89	18	16.8224
SMAD7	0	genome.wustl.edu	37	18	46448019	46448019	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	18	46448019	46448019	C	T	SNP	SMAD7	ENST00000262158	human	ensembl	74_37	-1	known	missense	c.1004	p.R335H	1.000	pfam_SMAD_dom_Dwarfin-type,superfamily_SMAD_FHA_domain,smart_SMAD_dom_Dwarfin-type,pfscan_SMAD_dom_Dwarfin-type	pfam_SMAD_dom_Dwarfin-type,pfam_MAD_homology1_Dwarfin-type,superfamily_SMAD_FHA_domain,superfamily_MAD_homology_MH1,smart_MAD_homology1_Dwarfin-type,smart_SMAD_dom_Dwarfin-type,pfscan_MAD_homology_MH1,pfscan_SMAD_dom_Dwarfin-type	-	no_errors	SMAD7	HGNC	ENSG00000101665				48	0	0	56	10	15.1515
ST8SIA3	0	genome.wustl.edu	37	18	55027353	55027353	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	18	55027353	55027353	A	G	SNP	ST8SIA3	ENST00000324000	human	ensembl	74_37	+1	known	missense	c.988	p.T330A	1.000	pfam_Glyco_trans_29,pirsf_Sialyl_trans	pfam_Glyco_trans_29,pirsf_Sialyl_trans	-	no_errors	ST8SIA3	HGNC	ENSG00000177511				75	0	0	104	9	7.9646
ATP8B1	0	genome.wustl.edu	37	18	55365098	55365098	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	18	55365098	55365098	A	G	SNP	ATP8B1	ENST00000283684	human	ensembl	74_37	-1	known	missense	c.556	p.F186L	1.000	pfam_ATPase_P-typ_transduc_dom_A,tigrfam_ATPase_P-typ_Plipid-transp	pfam_ATPase_P-typ_transduc_dom_A,pfam_HAD-like_dom,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Plipid-transp,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP8B1	HGNC	ENSG00000081923				38	0	0	53	5	8.62069
PIGN	0	genome.wustl.edu	37	18	59828459	59828459	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	18	59828459	59828459	G	T	SNP	PIGN	ENST00000357637	human	ensembl	74_37	-1	known	missense	c.128	p.A43E	1.000	superfamily_Alkaline_phosphatase_core	pfam_GPI_EtnP_transferase_1_C,pfam_Phosphodiest/P_Trfase,pfam_Sulfatase,superfamily_Alkaline_phosphatase_core	-	no_errors	PIGN	HGNC	ENSG00000197563				81	0	0	85	15	15
ARHGAP28	0	genome.wustl.edu	37	18	6890442	6890442	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	18	6890442	6890442	T	C	SNP	ARHGAP28	ENST00000400091	human	ensembl	74_37	+1	known	missense	c.1748	p.L583S	0.986	NULL	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP28	HGNC	ENSG00000088756				61	0	0	40	6	13.0435
ZNF407	0	genome.wustl.edu	37	18	72775204	72775204	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	18	72775204	72775204	C	T	SNP	ZNF407	ENST00000299687	human	ensembl	74_37	+1	known	missense	c.5527	p.P1843S	0.171	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,smart_Znf_U1,pfscan_Znf_C2H2	-	no_errors	ZNF407	HGNC	ENSG00000215421				168	0	0	224	36	13.8462
ZNF236	0	genome.wustl.edu	37	18	74607223	74607223	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	18	74607223	74607223	C	A	SNP	ZNF236	ENST00000253159	human	ensembl	74_37	+1	known	missense	c.1666	p.H556N	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF236	HGNC	ENSG00000130856				44	0	0	61	11	15.2778
ZNF236	0	genome.wustl.edu	37	18	74627612	74627612	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	18	74627612	74627612	C	T	SNP	ZNF236	ENST00000253159	human	ensembl	74_37	+1	known	missense	c.3065	p.A1022V	0.001	pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF236	HGNC	ENSG00000130856				153	0	0	160	43	21.1823
ATP9B	0	genome.wustl.edu	37	18	77107847	77107847	+	Silent	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	18	77107847	77107847	C	T	SNP	ATP9B	ENST00000426216	human	ensembl	74_37	+1	known	silent	c.2760	p.H920	0.830	tigrfam_ATPase_P-typ_Plipid-transp,tigrfam_Cation_transp_P_typ_ATPase	pfam_ATPase_P-typ_transduc_dom_A,pfam_HAD-like_dom,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Plipid-transp,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP9B	HGNC	ENSG00000166377				91	0	0	108	23	17.5573
PTPRM	0	genome.wustl.edu	37	18	8394488	8394488	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	18	8394488	8394488	G	A	SNP	PTPRM	ENST00000400060	human	ensembl	74_37	+1	known	missense	c.4226	p.R1409H	1.000	pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_MAM_dom,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_MAM_dom,smart_Ig_sub,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_MAM_dom,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like_dom,prints_Tyr_Pase_rcpt/non-rcpt,prints_MAM_dom	-	no_errors	PTPRM	HGNC	ENSG00000173482				50	0	0	56	13	18.8406
DNMT1	0	genome.wustl.edu	37	19	10250716	10250716	+	RNA	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	19	10250716	10250716	G	A	SNP	DNMT1	ENST00000589538	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	DNMT1	HGNC	ENSG00000130816				71	0	0	113	27	19.2857
DNMT1	0	genome.wustl.edu	37	19	10267172	10267172	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	19	10267172	10267172	G	A	SNP	DNMT1	ENST00000359526	human	ensembl	74_37	-1	known	missense	c.1294	p.H432Y	0.478	pirsf_DNA_C5-MeTrfase_1_euk,pfam_Cytosine_MeTrfase1_RFD	pirsf_DNA_C5-MeTrfase_1_euk,pfam_C5_MeTfrase,pfam_BAH_dom,pfam_Cytosine_MeTrfase1_RFD,pfam_DMAP1-bd,pfam_Znf_CXXC,smart_BAH_dom,prints_C5_MeTfrase,pfscan_BAH_dom,pfscan_Znf_CXXC	-	no_errors	DNMT1	HGNC	ENSG00000130816				76	0	0	92	22	19.2982
SMARCA4	0	genome.wustl.edu	37	19	11144113	11144113	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	19	11144113	11144113	G	A	SNP	SMARCA4	ENST00000358026	human	ensembl	74_37	+1	known	missense	c.3694	p.G1232S	1.000	superfamily_P-loop_NTPase,pfscan_Helicase_C	pfam_SNF2_N,pfam_Bromodomain,pfam_BRK_domain,pfam_Helicase/SANT-assoc_DNA-bd,pfam_Helicase_C,pfam_Gln-Leu-Gln_QLQ,superfamily_P-loop_NTPase,superfamily_Bromodomain,smart_Gln-Leu-Gln_QLQ,smart_HAS_subgr,smart_BRK_domain,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Bromodomain,prints_Bromodomain,pfscan_Helicase/SANT-assoc_DNA-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Bromodomain	-	no_errors	SMARCA4	HGNC	ENSG00000127616				151	0	0	174	47	21.267
LDLR	0	genome.wustl.edu	37	19	11217255	11217255	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	19	11217255	11217255	C	T	SNP	LDLR	ENST00000558518	human	ensembl	74_37	+1	known	missense	c.709	p.R237C	1.000	pfam_LDrepeatLR_classA_rpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,pfscan_LDrepeatLR_classA_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,pfam_EGF-like_Ca-bd_dom,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LDLR	HGNC	ENSG00000130164				128	0	0	139	33	19.186
CCDC151	0	genome.wustl.edu	37	19	11537032	11537032	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	19	11537032	11537032	G	A	SNP	CCDC151	ENST00000356392	human	ensembl	74_37	-1	known	missense	c.895	p.R299C	0.459	NULL	NULL	-	no_errors	CCDC151	HGNC	ENSG00000198003				47	0	0	83	8	8.79121
ZNF653	0	genome.wustl.edu	37	19	11598206	11598206	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	19	11598206	11598206	T	C	SNP	ZNF653	ENST00000293771	human	ensembl	74_37	-1	known	missense	c.1072	p.M358V	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF653	HGNC	ENSG00000161914				65	0	0	76	10	11.6279
ZNF625	0	genome.wustl.edu	37	19	12256707	12256707	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	19	12256707	12256707	C	T	SNP	ZNF625	ENST00000439556	human	ensembl	74_37	-1	known	missense	c.524	p.R175H	0.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF625	HGNC	ENSG00000257591				196	1	0.507614	243	81	25
ZNF442	0	genome.wustl.edu	37	19	12461259	12461259	+	Silent	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	19	12461259	12461259	C	T	SNP	ZNF442	ENST00000242804	human	ensembl	74_37	-1	known	silent	c.1140	p.K380	0.008	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF442	HGNC	ENSG00000198342				377	2	0.527704	403	82	16.9072
TNPO2	0	genome.wustl.edu	37	19	12829855	12829855	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	19	12829855	12829855	G	A	SNP	TNPO2	ENST00000425528	human	ensembl	74_37	-1	known	nonsense	c.313	p.R105*	0.998	superfamily_ARM-type_fold	pfam_HEAT,pfam_Importin-beta_N,superfamily_ARM-type_fold,smart_Importin-beta_N	-	no_errors	TNPO2	HGNC	ENSG00000105576				165	0	0	199	50	20.0803
RNASEH2A	0	genome.wustl.edu	37	19	12918305	12918305	+	Silent	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	19	12918305	12918305	C	T	SNP	RNASEH2A	ENST00000221486	human	ensembl	74_37	+1	known	silent	c.396	p.G132	0.980	pfam_RNase_HII/HIII_dom,superfamily_RNaseH-like_dom,tigrfam_RNase_H2_suA	pfam_RNase_HII/HIII_dom,superfamily_RNaseH-like_dom,tigrfam_RNase_H2_suA	-	no_errors	RNASEH2A	HGNC	ENSG00000104889				67	0	0	66	21	24.1379
NANOS3	0	genome.wustl.edu	37	19	13988423	13988423	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	19	13988423	13988423	C	T	SNP	NANOS3	ENST00000339133	human	ensembl	74_37	+1	known	missense	c.361	p.R121C	0.917	pfam_Znf_nanos-typ	pfam_Znf_nanos-typ	-	no_errors	NANOS3	HGNC	ENSG00000187556				41	0	0	48	12	20
CD97	0	genome.wustl.edu	37	19	14507198	14507198	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	19	14507198	14507198	G	A	SNP	CD97	ENST00000242786	human	ensembl	74_37	+1	known	missense	c.391	p.G131S	0.000	pfam_EGF-like_Ca-bd_dom,pfam_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom	pfam_GPCR_2_secretin-like,pfam_EGF-like_Ca-bd_dom,pfam_GPS_dom,pfam_EG-like_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_GPS_dom,pfscan_EG-like_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_CD97,prints_GPCR_2_secretin-like,prints_GPCR_2_EMR1_rcpt	-	no_errors	CD97	HGNC	ENSG00000123146				151	0	0	182	26	12.5
BRD4	0	genome.wustl.edu	37	19	15349730	15349730	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	19	15349730	15349730	G	A	SNP	BRD4	ENST00000263377	human	ensembl	74_37	-1	known	missense	c.3844	p.R1282C	1.000	NULL	pfam_Bromodomain,superfamily_Bromodomain,smart_Bromodomain,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BRD4	HGNC	ENSG00000141867				13	0	0	19	6	24
C19orf44	0	genome.wustl.edu	37	19	16611979	16611979	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	19	16611979	16611979	G	A	SNP	C19orf44	ENST00000221671	human	ensembl	74_37	+1	known	missense	c.376	p.G126S	0.000	NULL	NULL	-	no_errors	C19orf44	HGNC	ENSG00000105072				110	0	0	126	34	21.25
ANO8	0	genome.wustl.edu	37	19	17438603	17438603	+	Silent	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	19	17438603	17438603	G	A	SNP	ANO8	ENST00000159087	human	ensembl	74_37	-1	known	silent	c.2313	p.C771	0.767	pfam_Anoctamin	pfam_Anoctamin	-	no_errors	ANO8	HGNC	ENSG00000074855				155	1	0.641026	200	29	12.6638
PLVAP	0	genome.wustl.edu	37	19	17476403	17476403	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	19	17476403	17476403	G	A	SNP	PLVAP	ENST00000252590	human	ensembl	74_37	-1	known	missense	c.871	p.R291W	0.001	pfam_PV-1	pfam_PV-1	-	no_errors	PLVAP	HGNC	ENSG00000130300				79	0	0	105	21	16.6667
SLC27A1	0	genome.wustl.edu	37	19	17608216	17608216	+	Silent	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	19	17608216	17608216	C	T	SNP	SLC27A1	ENST00000252595	human	ensembl	74_37	+1	known	silent	c.1149	p.I383	0.987	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig	-	no_errors	SLC27A1	HGNC	ENSG00000130304				40	0	0	48	15	23.8095
IL12RB1	0	genome.wustl.edu	37	19	18179309	18179309	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	19	18179309	18179309	C	A	SNP	IL12RB1	ENST00000593993	human	ensembl	74_37	-1	known	missense	c.1217	p.G406V	0.005	NULL	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	IL12RB1	HGNC	ENSG00000096996				231	1	0.431034	271	48	15.047
REXO1	0	genome.wustl.edu	37	19	1820125	1820125	+	RNA	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	19	1820125	1820125	G	A	SNP	REXO1	ENST00000586343	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	REXO1	HGNC	ENSG00000079313				40	0	0	53	10	15.873
SUGP1	0	genome.wustl.edu	37	19	19414736	19414736	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	19	19414736	19414736	G	A	SNP	SUGP1	ENST00000334782	human	ensembl	74_37	-1	known	missense	c.655	p.R219C	0.999	NULL	NULL	-	no_errors	SUGP1	HGNC	ENSG00000105705				256	0	0	309	65	17.3797
MAU2	0	genome.wustl.edu	37	19	19448072	19448072	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	19	19448072	19448072	G	A	SNP	MAU2	ENST00000262815	human	ensembl	74_37	+1	known	missense	c.454	p.A152T	1.000	pfam_Cohesin_loading_factor	pfam_Cohesin_loading_factor,smart_TPR_repeat	-	no_errors	MAU2	HGNC	ENSG00000129933				27	0	0	38	3	7.31707
GMIP	0	genome.wustl.edu	37	19	19744834	19744834	+	Silent	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	19	19744834	19744834	G	A	SNP	GMIP	ENST00000203556	human	ensembl	74_37	-1	known	silent	c.2250	p.I750	0.000	superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_RhoGAP_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_RhoGAP_dom	-	no_errors	GMIP	HGNC	ENSG00000089639				100	0	0	112	26	18.8406
ZNF431	0	genome.wustl.edu	37	19	21365877	21365877	+	Silent	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	19	21365877	21365877	G	A	SNP	ZNF431	ENST00000311048	human	ensembl	74_37	+1	known	silent	c.771	p.E257	1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF431	HGNC	ENSG00000196705				105	0	0	107	25	18.9394
DOT1L	0	genome.wustl.edu	37	19	2213582	2213582	+	Silent	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	19	2213582	2213582	C	T	SNP	DOT1L	ENST00000398665	human	ensembl	74_37	+1	known	silent	c.1602	p.S534	0.997	pirsf_Histone_H3-K79_MeTrfase_met	pfam_DOT1,pirsf_Histone_H3-K79_MeTrfase_met	-	no_errors	DOT1L	HGNC	ENSG00000104885				97	0	0	118	21	15.1079
ZNF676	0	genome.wustl.edu	37	19	22379411	22379411	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	19	22379411	22379411	C	T	SNP	ZNF676	ENST00000397121	human	ensembl	74_37	-1	known	missense	c.25	p.V9I	0.967	superfamily_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,superfamily_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF676	HGNC	ENSG00000196109				267	1	0.373134	285	47	14.1566
GNA11	0	genome.wustl.edu	37	19	3110179	3110179	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	19	3110179	3110179	A	C	SNP	GNA11	ENST00000078429	human	ensembl	74_37	+1	known	missense	c.169	p.K57Q	1.000	pfam_Gprotein_alpha_su,superfamily_P-loop_NTPase,smart_Gprotein_alpha_su	pfam_Gprotein_alpha_su,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,superfamily_GproteinA_insert,smart_Gprotein_alpha_su,prints_Gprotein_alpha_su,prints_Gprotein_alpha_Q,prints_Fungi_Gprotein_alpha	-	no_errors	GNA11	HGNC	ENSG00000088256				21	0	0	24	6	20
ANKRD27	0	genome.wustl.edu	37	19	33110407	33110407	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	19	33110407	33110407	G	A	SNP	ANKRD27	ENST00000306065	human	ensembl	74_37	-1	known	missense	c.1880	p.S627L	0.396	pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_VPS9,superfamily_Ankyrin_rpt-contain_dom,smart_VPS9_subgr,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_VPS9,prints_Ankyrin_rpt	-	no_errors	ANKRD27	HGNC	ENSG00000105186				134	0	0	148	35	19.1257
GPATCH1	0	genome.wustl.edu	37	19	33608733	33608733	+	Silent	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	19	33608733	33608733	C	T	SNP	GPATCH1	ENST00000170564	human	ensembl	74_37	+1	known	silent	c.2199	p.T733	0.000	NULL	pfam_DUF1604,pfam_G_patch_dom,superfamily_C-type_lectin_fold,pfscan_G_patch_dom	-	no_errors	GPATCH1	HGNC	ENSG00000076650				126	0	0	126	22	14.8649
LRP3	0	genome.wustl.edu	37	19	33687652	33687652	+	Silent	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	19	33687652	33687652	C	T	SNP	LRP3	ENST00000253193	human	ensembl	74_37	+1	known	silent	c.90	p.T30	0.119	NULL	pfam_LDrepeatLR_classA_rpt,pfam_CUB_dom,superfamily_CUB_dom,superfamily_LDrepeatLR_classA_rpt,smart_CUB_dom,smart_LDrepeatLR_classA_rpt,pfscan_CUB_dom,pfscan_LDrepeatLR_classA_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP3	HGNC	ENSG00000130881				151	0	0	168	31	15.5779
TMEM147	0	genome.wustl.edu	37	19	36036859	36036859	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	19	36036859	36036859	G	A	SNP	TMEM147	ENST00000593027	human	ensembl	74_37	+1	known	missense	c.46	p.D16N	1.000	NULL	NULL	-	no_errors	TMEM147	HGNC	ENSG00000105677				22	0	0	21	9	30
LRFN3	0	genome.wustl.edu	37	19	36435796	36435796	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	19	36435796	36435796	G	A	SNP	LRFN3	ENST00000246529	human	ensembl	74_37	+1	known	missense	c.1762	p.G588S	1.000	NULL	pfam_Leu-rich_rpt,pfam_Ig_I-set,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	LRFN3	HGNC	ENSG00000126243				14	0	0	23	5	17.8571
SIPA1L3	0	genome.wustl.edu	37	19	38572401	38572401	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	19	38572401	38572401	C	T	SNP	SIPA1L3	ENST00000222345	human	ensembl	74_37	+1	known	missense	c.196	p.R66C	0.764	NULL	pfam_DUF3401,pfam_Rap_GAP_dom,superfamily_PDZ,smart_PDZ,pfscan_PDZ,pfscan_Rap_GAP_dom	-	no_errors	SIPA1L3	HGNC	ENSG00000105738				19	0	0	36	11	23.4043
RYR1	0	genome.wustl.edu	37	19	38976748	38976748	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	19	38976748	38976748	C	T	SNP	RYR1	ENST00000359596	human	ensembl	74_37	+1	known	missense	c.5453	p.A1818V	1.000	NULL	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ConA-like_lec_gl_sf,superfamily_MG_RAP_rcpt_1,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_MIR_motif	-	no_errors	RYR1	HGNC	ENSG00000196218				123	0	0	207	39	15.8537
RYR1	0	genome.wustl.edu	37	19	39010019	39010019	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	19	39010019	39010019	G	A	SNP	RYR1	ENST00000359596	human	ensembl	74_37	+1	known	missense	c.10184	p.R3395Q	1.000	NULL	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ConA-like_lec_gl_sf,superfamily_MG_RAP_rcpt_1,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_MIR_motif	-	no_errors	RYR1	HGNC	ENSG00000196218				19	0	0	28	7	20
SIRT2	0	genome.wustl.edu	37	19	39380359	39380359	+	Silent	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	19	39380359	39380359	G	A	SNP	SIRT2	ENST00000249396	human	ensembl	74_37	-1	known	silent	c.402	p.L134	0.994	pfam_Sirtuin,pirsf_NAD-dep_deAcase_SIR2_class_I,pfscan_Ssirtuin_cat_dom	pfam_Sirtuin,pirsf_NAD-dep_deAcase_SIR2_class_I,pfscan_Ssirtuin_cat_dom	-	no_errors	SIRT2	HGNC	ENSG00000068903				74	0	0	92	24	20.6897
PLEKHG2	0	genome.wustl.edu	37	19	39905680	39905680	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	19	39905680	39905680	C	T	SNP	PLEKHG2	ENST00000409794	human	ensembl	74_37	+1	known	missense	c.158	p.T53I	1.000	NULL	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PLEKHG2	HGNC	ENSG00000090924				15	0	0	14	5	26.3158
RPS16	0	genome.wustl.edu	37	19	39924246	39924246	+	Silent	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	19	39924246	39924246	G	A	SNP	RPS16	ENST00000339471	human	ensembl	74_37	-1	novel	silent	c.306	p.S102	0.000	NULL	pfam_Ribosomal_S9,superfamily_Ribosomal_S5_D2-typ_fold	-	no_errors	RPS16	HGNC	ENSG00000105193				82	0	0	101	24	19.2
LGALS14	0	genome.wustl.edu	37	19	40197275	40197275	+	Silent	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	19	40197275	40197275	G	A	SNP	LGALS14	ENST00000360675	human	ensembl	74_37	+1	known	silent	c.141	p.S47	0.001	pfam_Galectin_CRD,superfamily_ConA-like_lec_gl_sf,smart_Galectin_CRD	pfam_Galectin_CRD,superfamily_ConA-like_lec_gl_sf,smart_Galectin_CRD	-	no_errors	LGALS14	HGNC	ENSG00000006659				259	0	0	276	77	21.813
PLD3	0	genome.wustl.edu	37	19	40877716	40877716	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	19	40877716	40877716	G	A	SNP	PLD3	ENST00000356508	human	ensembl	74_37	+1	known	missense	c.815	p.R272H	0.014	NULL	pfam_PLipase_D/transphosphatidylase,smart_PLipase_D/transphosphatidylase,pfscan_PLipase_D/transphosphatidylase	-	no_errors	PLD3	HGNC	ENSG00000105223				91	0	0	106	25	19.084
MEGF8	0	genome.wustl.edu	37	19	42879848	42879848	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	19	42879848	42879848	G	A	SNP	MEGF8	ENST00000251268	human	ensembl	74_37	+1	known	missense	c.7459	p.V2487M	1.000	NULL	pfam_CUB_dom,pfam_EGF_laminin,pfam_Plexin_repeat,superfamily_Gal_Oxase/kelch_b-propeller,superfamily_CUB_dom,superfamily_Plexin-like_fold,smart_CUB_dom,smart_EG-like_dom,smart_Plexin-like_fold,smart_EGF-like_Ca-bd_dom,smart_EGF_laminin,pfscan_CUB_dom,pfscan_EG-like_dom,pfscan_EGF_laminin	-	no_errors	MEGF8	HGNC	ENSG00000105429				19	0	0	19	6	24
PSG2	0	genome.wustl.edu	37	19	43585372	43585372	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	19	43585372	43585372	G	A	SNP	PSG2	ENST00000406487	human	ensembl	74_37	-1	known	missense	c.91	p.P31S	0.001	NULL	pfam_Ig_V-set,pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	PSG2	HGNC	ENSG00000242221				302	0	0	303	84	21.7054
BCL3	0	genome.wustl.edu	37	19	45262835	45262835	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	19	45262835	45262835	G	A	SNP	BCL3	ENST00000164227	human	ensembl	74_37	+1	known	missense	c.1328	p.R443Q	1.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	BCL3	HGNC	ENSG00000069399				181	0	0	232	60	20.5479
RELB	0	genome.wustl.edu	37	19	45540995	45540995	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	19	45540995	45540995	C	T	SNP	RELB	ENST00000221452	human	ensembl	74_37	+1	known	missense	c.1687	p.R563C	0.999	NULL	pfam_RHD,superfamily_p53-like_TF_DNA-bd,superfamily_Ig_E-set,smart_IPT,pfscan_RHD,prints_NF_Rel_Dor	-	no_errors	RELB	HGNC	ENSG00000104856				64	0	0	83	19	18.6275
ZNF296	0	genome.wustl.edu	37	19	45575762	45575762	+	Silent	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	19	45575762	45575762	G	A	SNP	ZNF296	ENST00000303809	human	ensembl	74_37	-1	known	silent	c.525	p.H175	0.011	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF296	HGNC	ENSG00000170684				118	1	0.840336	147	21	12.5
PPP1R13L	0	genome.wustl.edu	37	19	45900294	45900294	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	19	45900294	45900294	G	A	SNP	PPP1R13L	ENST00000360957	human	ensembl	74_37	-1	known	missense	c.221	p.S74L	0.988	NULL	pfam_Ankyrin_rpt,pfam_SH3_domain,pfam_SH3_2,superfamily_Ankyrin_rpt-contain_dom,superfamily_SH3_domain,smart_Ankyrin_rpt,smart_SH3_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SH3_domain,prints_SH3_domain	-	no_errors	PPP1R13L	HGNC	ENSG00000104881				13	0	0	10	5	33.3333
RTN2	0	genome.wustl.edu	37	19	45989353	45989353	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	19	45989353	45989353	C	T	SNP	RTN2	ENST00000245923	human	ensembl	74_37	-1	known	missense	c.1516	p.V506M	1.000	pfam_Reticulon,pfscan_Reticulon	pfam_Reticulon,pfscan_Reticulon	-	no_errors	RTN2	HGNC	ENSG00000125744				41	0	0	64	10	13.5135
FBXO46	0	genome.wustl.edu	37	19	46215117	46215117	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	19	46215117	46215117	C	T	SNP	FBXO46	ENST00000317683	human	ensembl	74_37	-1	known	missense	c.1637	p.R546H	1.000	superfamily_F-box_dom	superfamily_F-box_dom,smart_F-box_dom,pfscan_F-box_dom	-	no_errors	FBXO46	HGNC	ENSG00000177051				48	0	0	68	14	17.0732
PGLYRP1	0	genome.wustl.edu	37	19	46526000	46526000	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	19	46526000	46526000	C	G	SNP	PGLYRP1	ENST00000008938	human	ensembl	74_37	-1	known	missense	c.280	p.G94R	0.885	pfam_Amidase_domain,superfamily_Amidase_domain,smart_PGRP_domain_met/bac,smart_Amidase_domain,pirsf_Peptidoglycan_recognition	pfam_Amidase_domain,superfamily_Amidase_domain,smart_PGRP_domain_met/bac,smart_Amidase_domain,pirsf_Peptidoglycan_recognition	-	no_errors	PGLYRP1	HGNC	ENSG00000008438				92	0	0	138	11	7.38255
ARHGAP35	0	genome.wustl.edu	37	19	47492845	47492845	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	19	47492845	47492845	G	A	SNP	ARHGAP35	ENST00000404338	human	ensembl	74_37	+1	known	missense	c.3949	p.V1317M	1.000	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	pfam_RhoGAP_dom,pfam_Small_GTPase,pfam_FF_domain,superfamily_Rho_GTPase_activation_prot,superfamily_P-loop_NTPase,superfamily_FF_domain,smart_FF_domain,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP35	HGNC	ENSG00000160007				139	0	0	159	50	23.9234
LIG1	0	genome.wustl.edu	37	19	48620961	48620961	+	Silent	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	19	48620961	48620961	G	A	SNP	LIG1	ENST00000263274	human	ensembl	74_37	-1	known	silent	c.2517	p.S839	0.131	pfam_DNA_ligase_ATP-dep_C,superfamily_NA-bd_OB-fold,tigrfam_DNA_ligase_ATP-dep	pfam_DNA_ligase_ATP-dep_cent,pfam_DNA_ligase_ATP-dep_N,pfam_DNA_ligase_ATP-dep_C,superfamily_DNA_ligase_ATP-dep_N,superfamily_NA-bd_OB-fold,pfscan_DNA_ligase_ATP-dep_cent,tigrfam_DNA_ligase_ATP-dep	-	no_errors	LIG1	HGNC	ENSG00000105486				12	0	0	28	15	34.8837
ARRDC5	0	genome.wustl.edu	37	19	4891270	4891270	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	19	4891270	4891270	G	T	SNP	ARRDC5	ENST00000381781	human	ensembl	74_37	-1	known	missense	c.817	p.L273M	0.955	pfam_Arrestin_C-like,superfamily_Ig_E-set	pfam_Arrestin-like_N,pfam_Arrestin_C-like,superfamily_Ig_E-set	-	no_errors	ARRDC5	HGNC	ENSG00000205784				181	1	0.549451	208	53	20.3065
GRIN2D	0	genome.wustl.edu	37	19	48919411	48919411	+	Silent	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	19	48919411	48919411	C	T	SNP	GRIN2D	ENST00000263269	human	ensembl	74_37	+1	known	silent	c.1734	p.L578	0.681	pfam_SBP_bac_3,smart_Iontro_glu_rcpt	pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIN2D	HGNC	ENSG00000105464				47	0	0	74	7	8.64198
FUT1	0	genome.wustl.edu	37	19	49254356	49254356	+	Silent	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	19	49254356	49254356	C	T	SNP	FUT1	ENST00000310160	human	ensembl	74_37	-1	known	silent	c.183	p.A61	0.000	pfam_Glyco_trans_11	pfam_Glyco_trans_11	-	no_errors	FUT1	HGNC	ENSG00000174951				84	0	0	88	25	22.1239
PPFIA3	0	genome.wustl.edu	37	19	49646088	49646088	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	19	49646088	49646088	G	A	SNP	PPFIA3	ENST00000334186	human	ensembl	74_37	+1	known	missense	c.2572	p.V858M	1.000	pfam_SAM_2,pfam_SAM_type1,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	pfam_SAM_2,pfam_SAM_type1,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	-	no_errors	PPFIA3	HGNC	ENSG00000177380				128	0	0	160	17	9.60452
RCN3	0	genome.wustl.edu	37	19	50031892	50031892	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	19	50031892	50031892	G	A	SNP	RCN3	ENST00000270645	human	ensembl	74_37	+1	known	missense	c.163	p.D55N	1.000	NULL	smart_EF_hand_dom,pfscan_EF_hand_dom	-	no_errors	RCN3	HGNC	ENSG00000142552				147	1	0.675676	179	41	18.6364
FUZ	0	genome.wustl.edu	37	19	50312814	50312814	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	19	50312814	50312814	C	T	SNP	FUZ	ENST00000313777	human	ensembl	74_37	-1	known	missense	c.511	p.A171T	0.984	NULL	NULL	-	no_errors	FUZ	HGNC	ENSG00000010361				14	0	0	22	5	18.5185
KDM4B	0	genome.wustl.edu	37	19	5071059	5071059	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	19	5071059	5071059	G	A	SNP	KDM4B	ENST00000159111	human	ensembl	74_37	+1	known	missense	c.665	p.R222Q	1.000	pfam_JmjC_dom,smart_JmjC_dom,pfscan_JmjC_dom	pfam_JmjC_dom,pfam_TF_JmjN,superfamily_Znf_FYVE_PHD,smart_TF_JmjN,smart_JmjC_dom,smart_Znf_PHD,smart_Tudor,pfscan_TF_JmjN,pfscan_JmjC_dom	-	no_errors	KDM4B	HGNC	ENSG00000127663				41	0	0	69	16	18.8235
NAPSA	0	genome.wustl.edu	37	19	50864364	50864364	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	19	50864364	50864364	C	T	SNP	NAPSA	ENST00000253719	human	ensembl	74_37	-1	known	missense	c.502	p.G168R	1.000	pfam_Aspartic_peptidase,superfamily_Peptidase_aspartic_dom	pfam_Aspartic_peptidase,superfamily_Peptidase_aspartic_dom,prints_Aspartic_peptidase	-	no_errors	NAPSA	HGNC	ENSG00000131400				240	0	0	227	47	17.1533
KLK6	0	genome.wustl.edu	37	19	51466663	51466663	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	19	51466663	51466663	G	A	SNP	KLK6	ENST00000310157	human	ensembl	74_37	-1	known	missense	c.340	p.R114C	0.001	pfam_Peptidase_S1,pfam_Peptidase_S1A_nudel,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1,prints_Peptidase_S1A	pfam_Peptidase_S1,pfam_Peptidase_S1A_nudel,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	KLK6	HGNC	ENSG00000167755				54	0	0	96	17	15.0442
KLK6	0	genome.wustl.edu	37	19	51466771	51466771	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	19	51466771	51466771	G	A	SNP	KLK6	ENST00000310157	human	ensembl	74_37	-1	known	missense	c.232	p.R78W	0.007	pfam_Peptidase_S1,pfam_Peptidase_S1A_nudel,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1	pfam_Peptidase_S1,pfam_Peptidase_S1A_nudel,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	KLK6	HGNC	ENSG00000167755				95	0	0	127	26	16.9935
ZNF665	0	genome.wustl.edu	37	19	53669090	53669090	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	19	53669090	53669090	C	T	SNP	ZNF665	ENST00000396424	human	ensembl	74_37	-1	known	missense	c.653	p.R218H	0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF665	HGNC	ENSG00000197497				179	1	0.555556	178	44	19.8198
ZNRF4	0	genome.wustl.edu	37	19	5455726	5455726	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	19	5455726	5455726	G	A	SNP	ZNRF4	ENST00000222033	human	ensembl	74_37	+1	known	missense	c.224	p.R75Q	0.000	NULL	pfam_Protease-assoc_domain,pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	ZNRF4	HGNC	ENSG00000105428				100	0	0	146	27	15.6069
PRPF31	0	genome.wustl.edu	37	19	54625258	54625258	+	Silent	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	19	54625258	54625258	C	T	SNP	PRPF31	ENST00000321030	human	ensembl	74_37	+1	known	silent	c.258	p.A86	0.792	NULL	pfam_Nop_dom,pfam_Prp31_C,pfam_NOSIC,smart_NOSIC	-	no_errors	PRPF31	HGNC	ENSG00000105618				24	0	0	28	4	12.5
LAIR1	0	genome.wustl.edu	37	19	54876412	54876412	+	RNA	SNP	G	G	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	19	54876412	54876412	G	T	SNP	LAIR1	ENST00000484116	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.899	-	-	-	no_errors	LAIR1	HGNC	ENSG00000167613				84	0	0	101	29	22.3077
TTYH1	0	genome.wustl.edu	37	19	54930393	54930393	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	19	54930393	54930393	G	A	SNP	TTYH1	ENST00000376531	human	ensembl	74_37	+1	known	missense	c.218	p.R73Q	0.825	pfam_Tweety	pfam_Tweety	-	no_errors	TTYH1	HGNC	ENSG00000167614				116	0	0	152	30	16.4835
NLRP7	0	genome.wustl.edu	37	19	55450873	55450873	+	Silent	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	19	55450873	55450873	G	A	SNP	NLRP7	ENST00000446217	human	ensembl	74_37	-1	known	silent	c.1398	p.L466	0.000	NULL	pfam_DAPIN,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP7	HGNC	ENSG00000167634				97	0	0	116	26	18.3099
NLRP9	0	genome.wustl.edu	37	19	56241264	56241264	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	19	56241264	56241264	C	T	SNP	NLRP9	ENST00000332836	human	ensembl	74_37	-1	known	missense	c.1927	p.D643N	0.000	smart_Leu-rich_rpt_RNase_inh_sub-typ	pfam_DAPIN,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP9	HGNC	ENSG00000185792				135	0	0	143	46	24.3386
SAFB	0	genome.wustl.edu	37	19	5661542	5661542	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	19	5661542	5661542	C	T	SNP	SAFB	ENST00000588852	human	ensembl	74_37	+1	known	missense	c.1876	p.R626C	1.000	NULL	pfam_RRM_dom,pfam_SAP_dom,smart_SAP_dom,smart_RRM_dom,pfscan_SAP_dom,pfscan_RRM_dom	-	no_errors	SAFB	HGNC	ENSG00000160633				120	1	0.826446	162	38	19
ZNF71	0	genome.wustl.edu	37	19	57133642	57133642	+	Silent	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	19	57133642	57133642	C	T	SNP	ZNF71	ENST00000328070	human	ensembl	74_37	+1	known	silent	c.987	p.G329	0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF71	HGNC	ENSG00000197951				105	0	0	125	20	13.7931
ZNF835	0	genome.wustl.edu	37	19	57175745	57175745	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	19	57175745	57175745	C	A	SNP	ZNF835	ENST00000537055	human	ensembl	74_37	-1	known	missense	c.822	p.E274D	0.001	pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF835	HGNC	ENSG00000127903				13	0	0	30	12	28.5714
ZNF671	0	genome.wustl.edu	37	19	58232172	58232172	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	19	58232172	58232172	T	C	SNP	ZNF671	ENST00000317398	human	ensembl	74_37	-1	known	missense	c.1282	p.S428G	0.016	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF671	HGNC	ENSG00000083814				143	0	0	188	26	12.1495
ZNF814	0	genome.wustl.edu	37	19	58385329	58385329	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	19	58385329	58385329	G	A	SNP	ZNF814	ENST00000435989	human	ensembl	74_37	-1	known	missense	c.1429	p.R477C	0.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF814	HGNC	ENSG00000204514				64	0	0	72	18	20
ZSCAN1	0	genome.wustl.edu	37	19	58549583	58549583	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	19	58549583	58549583	C	T	SNP	ZSCAN1	ENST00000391700	human	ensembl	74_37	+1	known	missense	c.379	p.R127C	0.004	smart_Tscrpt_reg_SCAN	pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZSCAN1	HGNC	ENSG00000152467				15	0	0	17	4	19.0476
SLC27A5	0	genome.wustl.edu	37	19	59021257	59021257	+	Silent	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	19	59021257	59021257	G	A	SNP	SLC27A5	ENST00000263093	human	ensembl	74_37	-1	known	silent	c.1014	p.H338	0.031	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig	-	no_errors	SLC27A5	HGNC	ENSG00000083807				45	0	0	63	9	12.5
ZBTB45	0	genome.wustl.edu	37	19	59028288	59028288	+	Silent	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	19	59028288	59028288	G	A	SNP	ZBTB45	ENST00000354590	human	ensembl	74_37	-1	known	silent	c.753	p.S251	0.004	NULL	pfam_BTB_POZ,pfam_Znf_C2H2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB45	HGNC	ENSG00000119574				362	1	0.275482	403	104	20.5128
VAV1	0	genome.wustl.edu	37	19	6854032	6854032	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	19	6854032	6854032	C	A	SNP	VAV1	ENST00000602142	human	ensembl	74_37	+1	known	missense	c.2407	p.L803I	1.000	pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain,prints_SH3_domain	pfam_DH-domain,pfam_SH3_domain,pfam_SH3_2,pfam_CAMSAP_CH,pfam_SH2,pfam_CH-domain,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pleckstrin_homology,superfamily_DH-domain,superfamily_CH-domain,superfamily_SH3_domain,smart_CH-domain,smart_DH-domain,smart_Pleckstrin_homology,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_SH3_domain,smart_SH2,pfscan_CH-domain,pfscan_Pleckstrin_homology,pfscan_SH2,pfscan_SH3_domain,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_DH-domain,prints_SH3_domain,prints_SH2,prints_SM22_calponin	-	no_errors	VAV1	HGNC	ENSG00000141968				140	0	0	210	46	17.9688
HNRNPM	0	genome.wustl.edu	37	19	8527430	8527430	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	19	8527430	8527430	G	A	SNP	HNRNPM	ENST00000325495	human	ensembl	74_37	+1	known	missense	c.301	p.V101M	1.000	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,pfam_HnRNP_M_PY-NLS,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	HNRNPM	HGNC	ENSG00000099783				328	0	0	415	47	10.1732
ADAMTS10	0	genome.wustl.edu	37	19	8670129	8670129	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	19	8670129	8670129	G	A	SNP	ADAMTS10	ENST00000270328	human	ensembl	74_37	-1	known	missense	c.203	p.T68M	0.008	pfam_Peptidase_M12B_N	pfam_Peptidase_M12B_N,pfam_Peptidase_M12B,pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS10	HGNC	ENSG00000142303				34	0	0	37	8	17.7778
EIF5B	0	genome.wustl.edu	37	2	100010862	100010862	+	Splice_Site	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	2	100010862	100010862	G	A	SNP	EIF5B	ENST00000289371	human	ensembl	74_37	+1	known	splice_site	c.3012+1	e19+1	1.000	-	-	-	no_errors	EIF5B	HGNC	ENSG00000158417				141	0	0	171	38	18.1818
CREG2	0	genome.wustl.edu	37	2	101967439	101967439	+	Silent	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	2	101967439	101967439	G	A	SNP	CREG2	ENST00000324768	human	ensembl	74_37	-1	known	silent	c.819	p.G273	0.065	superfamily_Split_barrel_FMN-bd,pirsf_CREG	superfamily_Split_barrel_FMN-bd,pirsf_CREG	-	no_errors	CREG2	HGNC	ENSG00000175874				184	0	0	234	26	10
NCK2	0	genome.wustl.edu	37	2	106498310	106498310	+	Silent	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	2	106498310	106498310	C	T	SNP	NCK2	ENST00000233154	human	ensembl	74_37	+1	known	silent	c.753	p.Y251	0.991	pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pirsf_Cytoplasmic_NCK,pfscan_SH3_domain	pfam_SH3_domain,pfam_SH3_2,pfam_SH2,superfamily_SH3_domain,smart_SH3_domain,smart_SH2,pirsf_Cytoplasmic_NCK,pfscan_SH2,pfscan_SH3_domain,prints_SH2,prints_SH3_domain	-	no_errors	NCK2	HGNC	ENSG00000071051				85	0	0	127	24	15.894
UXS1	0	genome.wustl.edu	37	2	106715192	106715192	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	2	106715192	106715192	T	C	SNP	UXS1	ENST00000283148	human	ensembl	74_37	-1	known	missense	c.1022	p.Q341R	1.000	pfam_dTDP_dehydrorham_reduct	pfam_Epimerase_deHydtase,pfam_UXS1_N,pfam_dTDP_dehydrorham_reduct,pfam_Male_sterile_NAD-bd,pfam_3Beta_OHSteriod_DH/Estase	-	no_errors	UXS1	HGNC	ENSG00000115652				19	0	0	20	5	20
ST6GAL2	0	genome.wustl.edu	37	2	107423342	107423342	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	2	107423342	107423342	C	T	SNP	ST6GAL2	ENST00000361686	human	ensembl	74_37	-1	known	missense	c.1382	p.R461Q	0.996	pfam_Glyco_trans_29	pfam_Glyco_trans_29,superfamily_Glyco_hydro/deAcase_b/a-brl	-	no_errors	ST6GAL2	HGNC	ENSG00000144057				56	0	0	79	20	20.202
KCNF1	0	genome.wustl.edu	37	2	11053018	11053018	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	2	11053018	11053018	G	A	SNP	KCNF1	ENST00000295082	human	ensembl	74_37	+1	known	missense	c.466	p.A156T	0.959	NULL	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,pfam_PKD1_2_channel,superfamily_BTB/POZ_fold,prints_K_chnl,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv1,prints_K_chnl_volt-dep_Kv6	-	no_errors	KCNF1	HGNC	ENSG00000162975				65	0	0	104	24	18.75
ENSG00000273471	0	genome.wustl.edu	37	2	111144803	111144803	+	RNA	SNP	G	G	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	2	111144803	111144803	G	T	SNP	ENSG00000273471	ENST00000488671	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.992	-	-	-	no_errors	RP13-1039J1.4	Clone_based_vega_gene	ENSG00000273471				29	0	0	46	6	11.5385
FBLN7	0	genome.wustl.edu	37	2	112942900	112942900	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	2	112942900	112942900	G	A	SNP	FBLN7	ENST00000331203	human	ensembl	74_37	+1	known	missense	c.931	p.V311M	1.000	pfam_EGF-like_Ca-bd_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom	pfam_EGF-like_Ca-bd_dom,pfam_Sushi_SCR_CCP,pfam_EG-like_dom,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Sushi_SCR_CCP	-	no_errors	FBLN7	HGNC	ENSG00000144152				98	0	0	116	16	12.1212
EN1	0	genome.wustl.edu	37	2	119604372	119604372	+	Silent	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	2	119604372	119604372	C	T	SNP	EN1	ENST00000295206	human	ensembl	74_37	-1	known	silent	c.372	p.P124	0.001	NULL	pfam_Homeobox_dom,pfam_Homeobox-engrailed_C-terminal,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeodomain_engrailed,prints_Homeobox_metazoa,prints_Antifreeze_1,prints_K_chnl_volt-dep_Kv1.4	-	no_errors	EN1	HGNC	ENSG00000163064				61	0	0	78	20	20.4082
WDR33	0	genome.wustl.edu	37	2	128477227	128477227	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	2	128477227	128477227	C	T	SNP	WDR33	ENST00000322313	human	ensembl	74_37	-1	known	missense	c.2372	p.R791Q	1.000	NULL	pfam_WD40_repeat,pfam_Collagen,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR33	HGNC	ENSG00000136709				67	0	0	77	18	18.9474
ACMSD	0	genome.wustl.edu	37	2	135625178	135625178	+	Silent	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	2	135625178	135625178	C	T	SNP	ACMSD	ENST00000356140	human	ensembl	74_37	+1	known	silent	c.516	p.F172	0.972	pfam_Amidohydro_2	pfam_Amidohydro_2	-	no_errors	ACMSD	HGNC	ENSG00000153086				147	0	0	165	41	19.9029
TPO	0	genome.wustl.edu	37	2	1418199	1418199	+	Silent	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	2	1418199	1418199	C	T	SNP	TPO	ENST00000329066	human	ensembl	74_37	+1	known	silent	c.19	p.L7	0.178	NULL	pfam_Haem_peroxidase_animal,pfam_EGF-like_Ca-bd_dom,superfamily_Haem_peroxidase,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Sushi_SCR_CCP,pfscan_Haem_peroxidase_animal,prints_Haem_peroxidase_animal_subgr	-	no_errors	TPO	HGNC	ENSG00000115705				51	0	0	47	9	16.0714
SCN3A	0	genome.wustl.edu	37	2	165956828	165956828	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	2	165956828	165956828	C	T	SNP	SCN3A	ENST00000283254	human	ensembl	74_37	-1	known	missense	c.3950	p.R1317Q	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_DUF3451,pfam_Na_trans_assoc,pfam_PKD1_2_channel,pfscan_IQ_motif_EF-hand-BS,prints_Na_channel_asu,prints_PKD_2	-	no_errors	SCN3A	HGNC	ENSG00000153253				99	0	0	100	21	17.3554
SCN3A	0	genome.wustl.edu	37	2	165984285	165984285	+	Silent	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	2	165984285	165984285	G	A	SNP	SCN3A	ENST00000283254	human	ensembl	74_37	-1	known	silent	c.3249	p.Y1083	0.323	pfam_Na_trans_assoc	pfam_Ion_trans_dom,pfam_DUF3451,pfam_Na_trans_assoc,pfam_PKD1_2_channel,pfscan_IQ_motif_EF-hand-BS,prints_Na_channel_asu,prints_PKD_2	-	no_errors	SCN3A	HGNC	ENSG00000153253				92	0	0	127	33	20.625
SCN1A	0	genome.wustl.edu	37	2	166848275	166848275	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	2	166848275	166848275	G	A	SNP	SCN1A	ENST00000303395	human	ensembl	74_37	-1	known	missense	c.5510	p.P1837L	0.996	NULL	pfam_Ion_trans_dom,pfam_DUF3451,pfam_Na_trans_assoc,pfam_PKD1_2_channel,prints_Na_channel_a1su,prints_Na_channel_asu,prints_PKD_2	-	no_errors	SCN1A	HGNC	ENSG00000144285				161	0	0	199	37	15.678
ZAK	0	genome.wustl.edu	37	2	174074513	174074513	+	Silent	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	2	174074513	174074513	G	A	SNP	ZAK	ENST00000375213	human	ensembl	74_37	+1	known	silent	c.801	p.T267	0.466	pfscan_Prot_kinase_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_SAM_type1,pfam_SAM_2,superfamily_Kinase-like_dom,superfamily_SAM/pointed,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,pfscan_SAM,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	MLTK	Uniprot_gn	ENSG00000091436				107	0	0	128	11	7.91367
SP3	0	genome.wustl.edu	37	2	174774779	174774779	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	2	174774779	174774779	A	G	SNP	SP3	ENST00000310015	human	ensembl	74_37	-1	known	missense	c.2236	p.S746P	1.000	NULL	pfam_Znf_C2H2,superfamily_Galactose-bd-like,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	SP3	HGNC	ENSG00000172845				115	0	0	134	40	22.9885
EVX2	0	genome.wustl.edu	37	2	176948177	176948177	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	2	176948177	176948177	C	T	SNP	EVX2	ENST00000308618	human	ensembl	74_37	-1	known	missense	c.328	p.A110T	1.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Antifreeze_1,prints_Homeobox_metazoa	-	no_errors	EVX2	HGNC	ENSG00000174279				40	0	0	49	9	15.5172
HOXD12	0	genome.wustl.edu	37	2	176965131	176965131	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	2	176965131	176965131	G	A	SNP	HOXD12	ENST00000404162	human	ensembl	74_37	+1	novel	missense	c.602	p.R201Q	0.000	NULL	NULL	-	no_errors	HOXD12	HGNC	ENSG00000170178				21	0	0	32	8	20
TTN	0	genome.wustl.edu	37	2	179391930	179391930	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	2	179391930	179391930	T	C	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.100081	p.T33361A	0.997	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				45	0	0	52	6	10.3448
TTN	0	genome.wustl.edu	37	2	179395635	179395635	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	2	179395635	179395635	G	A	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.98003	p.S32668F	1.000	superfamily_RNaseH-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				240	0	0	227	49	17.7536
TTN	0	genome.wustl.edu	37	2	179426759	179426759	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	2	179426759	179426759	C	T	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.76396	p.E25466K	1.000	pfam_Ig_I-set,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				32	0	0	42	7	14.2857
TTN	0	genome.wustl.edu	37	2	179428010	179428010	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	2	179428010	179428010	A	G	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.75145	p.W25049R	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				107	0	0	142	29	16.9591
TTN	0	genome.wustl.edu	37	2	179440367	179440367	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	2	179440367	179440367	C	T	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.62788	p.G20930S	0.976	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				171	0	0	193	48	19.917
TTN	0	genome.wustl.edu	37	2	179472567	179472567	+	Silent	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	2	179472567	179472567	G	A	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	silent	c.45243	p.A15081	0.001	pfam_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_Fibronectin_type3,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				146	0	0	178	48	21.2389
PDE1A	0	genome.wustl.edu	37	2	183094749	183094749	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	2	183094749	183094749	A	C	SNP	PDE1A	ENST00000456212	human	ensembl	74_37	-1	known	missense	c.707	p.L236R	1.000	pfam_PDEase_catalytic_dom,smart_HD/PDEase_dom	pfam_PDEase_catalytic_dom,pfam_PDEase_N,superfamily_GRIP,smart_HD/PDEase_dom,prints_PDEase	-	no_errors	PDE1A	HGNC	ENSG00000115252				76	0	0	83	23	21.6981
FRZB	0	genome.wustl.edu	37	2	183731002	183731002	+	Silent	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	2	183731002	183731002	C	T	SNP	FRZB	ENST00000295113	human	ensembl	74_37	-1	known	silent	c.279	p.A93	0.802	pfam_Frizzled_dom,superfamily_Frizzled_dom,smart_Frizzled_dom,pfscan_Frizzled_dom	pfam_Frizzled_dom,pfam_Netrin_module_non-TIMP,superfamily_Frizzled_dom,superfamily_TIMP-like_OB-fold,smart_Frizzled_dom,smart_Netrin_module_non-TIMP,pfscan_Frizzled_dom,pfscan_Netrin_domain	-	no_errors	FRZB	HGNC	ENSG00000162998				63	0	0	111	20	15.2672
WDR75	0	genome.wustl.edu	37	2	190328454	190328454	+	Silent	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	2	190328454	190328454	C	T	SNP	WDR75	ENST00000314761	human	ensembl	74_37	+1	known	silent	c.972	p.S324	0.808	superfamily_WD40_repeat_dom,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR75	HGNC	ENSG00000115368				123	1	0.806452	145	27	15.6977
DNAH7	0	genome.wustl.edu	37	2	196759791	196759791	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	2	196759791	196759791	C	T	SNP	DNAH7	ENST00000312428	human	ensembl	74_37	-1	known	missense	c.4805	p.R1602H	1.000	superfamily_P-loop_NTPase	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,superfamily_P-loop_NTPase,superfamily_Signal_recog_particle_SRP9/14,smart_AAA+_ATPase,pfscan_EF_hand_dom	-	no_errors	DNAH7	HGNC	ENSG00000118997				69	0	0	68	18	20.9302
STK17B	0	genome.wustl.edu	37	2	197008310	197008310	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	2	197008310	197008310	T	C	SNP	STK17B	ENST00000263955	human	ensembl	74_37	-1	known	missense	c.581	p.E194G	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	STK17B	HGNC	ENSG00000081320				173	0	0	181	50	21.645
HECW2	0	genome.wustl.edu	37	2	197080603	197080603	+	Silent	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	2	197080603	197080603	G	A	SNP	HECW2	ENST00000260983	human	ensembl	74_37	-1	known	silent	c.4593	p.I1531	1.000	pfam_HECT,superfamily_HECT,smart_HECT,pfscan_HECT	pfam_HECT,pfam_WW_dom,pfam_C2_dom,superfamily_HECT,superfamily_WW_dom,superfamily_C2_dom,smart_C2_dom,smart_WW_dom,smart_HECT,pfscan_HECT,pfscan_C2_dom,pfscan_WW_dom	-	no_errors	HECW2	HGNC	ENSG00000138411				80	0	0	97	24	19.8347
FAM117B	0	genome.wustl.edu	37	2	203620321	203620321	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	2	203620321	203620321	C	T	SNP	FAM117B	ENST00000392238	human	ensembl	74_37	+1	known	missense	c.1021	p.R341W	0.998	NULL	NULL	-	no_errors	FAM117B	HGNC	ENSG00000138439				237	0	0	270	58	17.6829
TTLL4	0	genome.wustl.edu	37	2	219611871	219611871	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	2	219611871	219611871	G	A	SNP	TTLL4	ENST00000258398	human	ensembl	74_37	+1	known	missense	c.2120	p.R707H	1.000	pfam_TTL/TTLL_fam	pfam_TTL/TTLL_fam	-	no_errors	TTLL4	HGNC	ENSG00000135912				82	0	0	71	21	22.8261
SPEG	0	genome.wustl.edu	37	2	220336640	220336640	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	2	220336640	220336640	G	A	SNP	SPEG	ENST00000312358	human	ensembl	74_37	+1	novel	missense	c.3766	p.G1256S	0.999	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	SPEG	HGNC	ENSG00000072195				52	0	0	62	16	20.5128
STK11IP	0	genome.wustl.edu	37	2	220473425	220473425	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	2	220473425	220473425	G	A	SNP	STK11IP	ENST00000456909	human	ensembl	74_37	+1	novel	missense	c.1724	p.R575H	0.115	NULL	NULL	-	no_errors	STK11IP	HGNC	ENSG00000144589				41	0	0	54	12	18.1818
CCDC140	0	genome.wustl.edu	37	2	223168942	223168942	+	Silent	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	2	223168942	223168942	G	A	SNP	CCDC140	ENST00000295226	human	ensembl	74_37	+1	known	silent	c.321	p.A107	0.000	NULL	NULL	-	no_errors	CCDC140	HGNC	ENSG00000163081				42	0	0	50	17	25.3731
MFF	0	genome.wustl.edu	37	2	228195480	228195480	+	Silent	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	2	228195480	228195480	C	T	SNP	MFF	ENST00000353339	human	ensembl	74_37	+1	known	silent	c.177	p.N59	0.836	pfam_FATE/Miff/Tango-11	pfam_FATE/Miff/Tango-11	-	no_errors	MFF	HGNC	ENSG00000168958				63	0	0	83	22	20.9524
GPR55	0	genome.wustl.edu	37	2	231775009	231775009	+	Silent	SNP	G	G	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	2	231775009	231775009	G	T	SNP	GPR55	ENST00000392039	human	ensembl	74_37	-1	known	silent	c.669	p.A223	0.997	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	GPR55	HGNC	ENSG00000135898				128	0	0	170	26	13.2653
NGEF	0	genome.wustl.edu	37	2	233756178	233756178	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	2	233756178	233756178	G	A	SNP	NGEF	ENST00000264051	human	ensembl	74_37	-1	known	missense	c.1162	p.R388W	1.000	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_DH-domain	pfam_DH-domain,pfam_SH3_domain,pfam_SH3_2,superfamily_DH-domain,superfamily_SH3_domain,smart_DH-domain,smart_Pleckstrin_homology,smart_SH3_domain,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_DH-domain	-	no_errors	NGEF	HGNC	ENSG00000066248				90	0	0	110	20	15.3846
HJURP	0	genome.wustl.edu	37	2	234754463	234754463	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	2	234754463	234754463	C	T	SNP	HJURP	ENST00000411486	human	ensembl	74_37	-1	known	missense	c.406	p.A136T	0.981	NULL	pfam_HJURP,pfam_HJURP_C,pfam_Centromere_Scm3_N	-	no_errors	HJURP	HGNC	ENSG00000123485				113	0	0	126	28	18.1818
GBX2	0	genome.wustl.edu	37	2	237074757	237074757	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	2	237074757	237074757	C	T	SNP	GBX2	ENST00000306318	human	ensembl	74_37	-1	known	missense	c.847	p.A283T	1.000	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa	-	no_errors	GBX2	HGNC	ENSG00000168505				145	0	0	182	37	16.895
COL6A3	0	genome.wustl.edu	37	2	238274435	238274435	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	2	238274435	238274435	C	T	SNP	COL6A3	ENST00000295550	human	ensembl	74_37	-1	known	missense	c.5744	p.R1915Q	0.000	smart_VWF_A,pfscan_VWF_A	pfam_VWF_A,pfam_Collagen,pfam_Prot_inh_Kunz-m,superfamily_Prot_inh_Kunz-m,superfamily_Fibronectin_type3,smart_VWF_A,smart_Prot_inh_Kunz-m,pfscan_Fibronectin_type3,pfscan_VWF_A,pfscan_Prot_inh_Kunz-m,prints_Prot_inh_Kunz-m	-	no_errors	COL6A3	HGNC	ENSG00000163359				119	0	0	164	28	14.5833
ATAD2B	0	genome.wustl.edu	37	2	24103515	24103515	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	2	24103515	24103515	G	A	SNP	ATAD2B	ENST00000238789	human	ensembl	74_37	-1	known	missense	c.895	p.P299S	1.000	NULL	pfam_ATPase_AAA_core,pfam_Bromodomain,pfam_IstB_ATP-bd,superfamily_P-loop_NTPase,superfamily_Bromodomain,smart_AAA+_ATPase,smart_Bromodomain,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	ATAD2B	HGNC	ENSG00000119778				23	0	0	31	6	16.2162
AGXT	0	genome.wustl.edu	37	2	241818169	241818169	+	Silent	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	2	241818169	241818169	C	T	SNP	AGXT	ENST00000307503	human	ensembl	74_37	+1	known	silent	c.1110	p.R370	0.000	pfam_Aminotrans_V/Cys_dSase,superfamily_PyrdxlP-dep_Trfase	pfam_Aminotrans_V/Cys_dSase,superfamily_PyrdxlP-dep_Trfase	-	no_errors	AGXT	HGNC	ENSG00000172482				9	0	0	10	4	28.5714
SNED1	0	genome.wustl.edu	37	2	242009422	242009422	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	2	242009422	242009422	T	C	SNP	SNED1	ENST00000310397	human	ensembl	74_37	+1	known	missense	c.3395	p.L1132S	0.003	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_EG-like_dom,pfam_Fibronectin_type3,pfam_Nidogen_extracell_dom,pfam_EGF_extracell,pfam_EGF-like_Ca-bd_dom,superfamily_Fibronectin_type3,superfamily_Sushi_SCR_CCP,smart_Nidogen_extracell_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Sushi_SCR_CCP,smart_Fibronectin_type3,pfscan_EG-like_dom,pfscan_Fibronectin_type3,pfscan_Sushi_SCR_CCP	-	no_errors	SNED1	HGNC	ENSG00000162804				38	0	0	61	12	16.4384
PDCD1	0	genome.wustl.edu	37	2	242793372	242793372	+	Silent	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	2	242793372	242793372	C	T	SNP	PDCD1	ENST00000334409	human	ensembl	74_37	-1	known	silent	c.705	p.P235	0.993	NULL	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	-	no_errors	PDCD1	HGNC	ENSG00000188389				55	0	0	72	29	28.7129
OTOF	0	genome.wustl.edu	37	2	26688695	26688695	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	2	26688695	26688695	C	A	SNP	OTOF	ENST00000272371	human	ensembl	74_37	-1	known	missense	c.4644	p.E1548D	1.000	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	pfam_C2_dom,pfam_Ferlin_B-domain,pfam_FerIin-domain,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	-	no_errors	OTOF	HGNC	ENSG00000115155				68	0	0	102	20	16.3934
TRIM54	0	genome.wustl.edu	37	2	27521604	27521604	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	2	27521604	27521604	C	T	SNP	TRIM54	ENST00000296098	human	ensembl	74_37	+1	known	missense	c.338	p.S113F	0.908	NULL	pfam_Znf_C3HC4_RING-type,pfam_Znf_B-box,superfamily_Chorismate_mutase_type_II,smart_Znf_RING,smart_Znf_B-box,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM54	HGNC	ENSG00000138100				42	0	0	58	9	13.4328
IFT172	0	genome.wustl.edu	37	2	27703932	27703932	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	2	27703932	27703932	C	T	SNP	IFT172	ENST00000260570	human	ensembl	74_37	-1	known	missense	c.766	p.V256M	1.000	superfamily_WD40_repeat_dom,smart_WD40_repeat	pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat	-	no_errors	IFT172	HGNC	ENSG00000138002				59	0	0	64	15	18.9873
PREPL	0	genome.wustl.edu	37	2	44549925	44549925	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	2	44549925	44549925	A	T	SNP	PREPL	ENST00000260648	human	ensembl	74_37	-1	known	missense	c.1965	p.S655R	0.532	pfam_Peptidase_S9,prints_Peptidase_S9A	pfam_Peptidase_S9,pfam_Pept_S9A_N,prints_Peptidase_S9A	-	no_errors	PREPL	HGNC	ENSG00000138078				273	0	0	326	30	8.42697
TTC7A	0	genome.wustl.edu	37	2	47202114	47202114	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	2	47202114	47202114	C	A	SNP	TTC7A	ENST00000319190	human	ensembl	74_37	+1	known	missense	c.520	p.L174I	1.000	NULL	pfam_TPR_2,pfam_TPR_1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC7A	HGNC	ENSG00000068724				134	0	0	134	30	18.2927
MSH6	0	genome.wustl.edu	37	2	48018188	48018188	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	2	48018188	48018188	G	A	SNP	MSH6	ENST00000234420	human	ensembl	74_37	+1	known	missense	c.383	p.R128H	0.708	pfam_PWWP_dom,smart_PWWP_dom,pirsf_DNA_mismatch_repair_Msh6,pfscan_PWWP_dom	pfam_DNA_mismatch_repair_MutS_C,pfam_DNA_mismatch_repair_MutS-lik_N,pfam_DNA_mismatch_repair_MutS_core,pfam_PWWP_dom,pfam_DNA_mismatch_repair_MutS_clamp,pfam_DNA_mmatch_repair_MutS_con_dom,superfamily_DNA_mismatch_repair_MutS_core,superfamily_P-loop_NTPase,superfamily_DNA_mismatch_repair_MutS_N,superfamily_DNA_mmatch_repair_MutS_con_dom,smart_PWWP_dom,smart_DNA_mismatch_repair_MutS_core,smart_DNA_mismatch_repair_MutS_C,pirsf_DNA_mismatch_repair_Msh6,pfscan_PWWP_dom	-	no_errors	MSH6	HGNC	ENSG00000116062				162	0	0	161	32	16.5803
SPTBN1	0	genome.wustl.edu	37	2	54876812	54876812	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	2	54876812	54876812	G	A	SNP	SPTBN1	ENST00000356805	human	ensembl	74_37	+1	known	missense	c.5263	p.V1755M	1.000	pirsf_Spectrin_bsu,pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pirsf_Spectrin_bsu,pfam_Spectrin_repeat,pfam_CH-domain,pfam_Pleckstrin_homology,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Pleckstrin_homology,prints_PH_dom-spectrin-type,pfscan_CH-domain,pfscan_Pleckstrin_homology	-	no_errors	SPTBN1	HGNC	ENSG00000115306				42	0	0	91	17	15.7407
EFEMP1	0	genome.wustl.edu	37	2	56098226	56098226	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	2	56098226	56098226	G	A	SNP	EFEMP1	ENST00000355426	human	ensembl	74_37	-1	known	missense	c.1033	p.R345W	1.000	pfam_EGF-like_Ca-bd_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom	pfam_EGF-like_Ca-bd_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom	-	no_errors	EFEMP1	HGNC	ENSG00000115380				107	0	0	104	24	18.75
CCDC85A	0	genome.wustl.edu	37	2	56420402	56420402	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	2	56420402	56420402	G	A	SNP	CCDC85A	ENST00000407595	human	ensembl	74_37	+1	known	missense	c.1067	p.G356D	1.000	NULL	pfam_DUF2216_coiled-coil	-	no_errors	CCDC85A	HGNC	ENSG00000055813				47	0	0	72	12	14.2857
MDH1	0	genome.wustl.edu	37	2	63832498	63832498	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	2	63832498	63832498	G	A	SNP	MDH1	ENST00000539945	human	ensembl	74_37	+1	known	missense	c.814	p.V272I	0.997	pfam_Lactate/malate_DH_C,superfamily_Lactate_DH/Glyco_Ohase_4_C,pirsf_L-lactate/malate_DH,tigrfam_Malate_DH_NAD-dep_euk,tigrfam_Malate_DH_type2	pfam_Lactate/malate_DH_C,pfam_Lactate/malate_DH_N,superfamily_Lactate_DH/Glyco_Ohase_4_C,pirsf_L-lactate/malate_DH,tigrfam_Malate_DH_NAD-dep_euk,tigrfam_Malate_DH_type2	-	no_errors	MDH1	HGNC	ENSG00000014641				72	0	0	88	18	16.9811
PROKR1	0	genome.wustl.edu	37	2	68873189	68873189	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	2	68873189	68873189	G	A	SNP	PROKR1	ENST00000303786	human	ensembl	74_37	+1	known	missense	c.236	p.G79E	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_NPY_rcpt	-	no_errors	PROKR1	HGNC	ENSG00000169618				266	0	0	283	59	17.2515
ARHGAP25	0	genome.wustl.edu	37	2	69014990	69014990	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	2	69014990	69014990	G	A	SNP	ARHGAP25	ENST00000409202	human	ensembl	74_37	+1	known	missense	c.368	p.R123H	0.666	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_RhoGAP_dom,pfam_Pleckstrin_homology,superfamily_Rho_GTPase_activation_prot,smart_Pleckstrin_homology,smart_RhoGAP_dom,pfscan_Pleckstrin_homology,pfscan_RhoGAP_dom	-	no_errors	ARHGAP25	HGNC	ENSG00000163219				162	0	0	217	39	15.2344
ARHGAP25	0	genome.wustl.edu	37	2	69034552	69034552	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	2	69034552	69034552	A	G	SNP	ARHGAP25	ENST00000409202	human	ensembl	74_37	+1	known	missense	c.614	p.D205G	1.000	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	pfam_RhoGAP_dom,pfam_Pleckstrin_homology,superfamily_Rho_GTPase_activation_prot,smart_Pleckstrin_homology,smart_RhoGAP_dom,pfscan_Pleckstrin_homology,pfscan_RhoGAP_dom	-	no_errors	ARHGAP25	HGNC	ENSG00000163219				111	0	0	119	30	20.1342
TGFA	0	genome.wustl.edu	37	2	70741999	70741999	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	2	70741999	70741999	G	A	SNP	TGFA	ENST00000295400	human	ensembl	74_37	-1	known	missense	c.86	p.P29L	0.070	NULL	pfscan_EG-like_dom	-	no_errors	TGFA	HGNC	ENSG00000163235				23	0	0	32	6	15.7895
ALMS1	0	genome.wustl.edu	37	2	73681186	73681186	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	2	73681186	73681186	G	A	SNP	ALMS1	ENST00000264448	human	ensembl	74_37	+1	known	missense	c.7529	p.R2510Q	1.000	NULL	NULL	-	no_errors	ALMS1	HGNC	ENSG00000116127				27	0	0	20	5	20
POLR1A	0	genome.wustl.edu	37	2	86292608	86292608	+	RNA	SNP	A	A	G			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	2	86292608	86292608	A	G	SNP	POLR1A	ENST00000483538	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	POLR1A	HGNC	ENSG00000068654				109	0	0	133	33	19.8795
THNSL2	0	genome.wustl.edu	37	2	88482275	88482275	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	2	88482275	88482275	G	A	SNP	THNSL2	ENST00000324166	human	ensembl	74_37	+1	known	missense	c.860	p.R287H	0.001	pfam_Trp_syn_b_sub_like_PLP_eny_SF,superfamily_Trp_syn_b_sub_like_PLP_eny_SF,tigrfam_Thr_synthase_like	pfam_Trp_syn_b_sub_like_PLP_eny_SF,superfamily_Trp_syn_b_sub_like_PLP_eny_SF,tigrfam_Thr_synthase_like	-	no_errors	THNSL2	HGNC	ENSG00000144115				98	0	0	103	34	24.8175
NCAPH	0	genome.wustl.edu	37	2	97019989	97019989	+	Silent	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	2	97019989	97019989	C	T	SNP	NCAPH	ENST00000240423	human	ensembl	74_37	+1	known	silent	c.1071	p.D357	0.031	pfam_Condensin_barren_su2,pirsf_Condensin_barren_su2	pfam_Condensin_barren_su2,pirsf_Condensin_barren_su2	-	no_errors	NCAPH	HGNC	ENSG00000121152				245	0	0	271	73	21.2209
KIAA1211L	0	genome.wustl.edu	37	2	99439344	99439344	+	Silent	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	2	99439344	99439344	C	T	SNP	KIAA1211L	ENST00000397899	human	ensembl	74_37	-1	known	silent	c.1392	p.A464	0.647	NULL	NULL	-	no_errors	KIAA1211L	HGNC	ENSG00000196872				34	0	0	50	17	25.3731
SPTLC3	0	genome.wustl.edu	37	20	13071817	13071817	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	20	13071817	13071817	G	A	SNP	SPTLC3	ENST00000399002	human	ensembl	74_37	+1	known	missense	c.694	p.A232T	1.000	pfam_Aminotransferase_I/II,pfam_ArAA_b-elim_lyase/Thr_aldolase,superfamily_PyrdxlP-dep_Trfase	pfam_Aminotransferase_I/II,pfam_ArAA_b-elim_lyase/Thr_aldolase,superfamily_PyrdxlP-dep_Trfase	-	no_errors	SPTLC3	HGNC	ENSG00000172296				159	0	0	152	32	17.3913
SEL1L2	0	genome.wustl.edu	37	20	13847380	13847380	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	20	13847380	13847380	C	A	SNP	SEL1L2	ENST00000284951	human	ensembl	74_37	-1	known	nonsense	c.1372	p.G458*	1.000	pfam_Sel1-like,smart_Sel1-like	pfam_Sel1-like,smart_Sel1-like	-	no_errors	SEL1L2	HGNC	ENSG00000101251				189	0	0	240	41	14.5907
FLRT3	0	genome.wustl.edu	37	20	14306569	14306569	+	Silent	SNP	A	A	C			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	20	14306569	14306569	A	C	SNP	FLRT3	ENST00000341420	human	ensembl	74_37	-1	known	silent	c.1584	p.P528	0.966	NULL	pfam_Leu-rich_rpt,superfamily_Fibronectin_type3,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,pfscan_Fibronectin_type3	-	no_errors	FLRT3	HGNC	ENSG00000125848				158	0	0	158	20	11.236
SIRPD	0	genome.wustl.edu	37	20	1532450	1532450	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	20	1532450	1532450	C	T	SNP	SIRPD	ENST00000381623	human	ensembl	74_37	-1	known	missense	c.308	p.R103H	0.020	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like_dom	-	no_errors	SIRPD	HGNC	ENSG00000125900				140	0	0	127	26	16.9935
PAX1	0	genome.wustl.edu	37	20	21687260	21687260	+	Silent	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	20	21687260	21687260	C	T	SNP	PAX1	ENST00000398485	human	ensembl	74_37	+1	known	silent	c.471	p.T157	0.005	pfam_Paired_dom,superfamily_Homeodomain-like,smart_Paired_dom,pfscan_Paired_dom,prints_Paired_dom	pfam_Paired_dom,superfamily_Homeodomain-like,smart_Paired_dom,pfscan_Paired_dom,prints_Paired_dom	-	no_errors	PAX1	HGNC	ENSG00000125813				111	0	0	146	32	17.9775
XKR7	0	genome.wustl.edu	37	20	30585220	30585220	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	20	30585220	30585220	G	T	SNP	XKR7	ENST00000562532	human	ensembl	74_37	+1	known	missense	c.1700	p.G567V	0.998	NULL	pfam_Transport_prot_XK	-	no_errors	XKR7	HGNC	ENSG00000260903				116	0	0	132	24	15.3846
DNMT3B	0	genome.wustl.edu	37	20	31386314	31386314	+	Silent	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	20	31386314	31386314	G	A	SNP	DNMT3B	ENST00000328111	human	ensembl	74_37	+1	known	silent	c.1539	p.A513	0.000	superfamily_Znf_FYVE_PHD	pfam_PWWP_dom,pfam_C5_MeTfrase,superfamily_Znf_FYVE_PHD,smart_PWWP_dom,pfscan_PWWP_dom	-	no_errors	DNMT3B	HGNC	ENSG00000088305				85	0	0	83	13	13.5417
BPIFB6	0	genome.wustl.edu	37	20	31619533	31619533	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	20	31619533	31619533	G	A	SNP	BPIFB6	ENST00000349552	human	ensembl	74_37	+1	known	missense	c.80	p.G27D	1.000	pfam_Lipid-bd_serum_glycop_N,superfamily_Bactericidal_perm-incr_a/b_dom	pfam_Lipid-bd_serum_glycop_N,pfam_Lipid-bd_serum_glycop_C,superfamily_Bactericidal_perm-incr_a/b_dom,smart_Lipid-bd_serum_glycop_C	-	no_errors	BPIFB6	HGNC	ENSG00000167104				57	0	0	68	11	13.9241
KIAA1755	0	genome.wustl.edu	37	20	36841597	36841597	+	Silent	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	20	36841597	36841597	G	A	SNP	KIAA1755	ENST00000279024	human	ensembl	74_37	-1	known	silent	c.3450	p.R1150	0.000	NULL	superfamily_CRAL-TRIO_dom	-	no_errors	KIAA1755	HGNC	ENSG00000149633				87	0	0	86	16	15.6863
SLC32A1	0	genome.wustl.edu	37	20	37356214	37356214	+	Silent	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	20	37356214	37356214	G	A	SNP	SLC32A1	ENST00000217420	human	ensembl	74_37	+1	known	silent	c.510	p.L170	1.000	pfam_AA_transpt_TM	pfam_AA_transpt_TM	-	no_errors	SLC32A1	HGNC	ENSG00000101438				107	0	0	115	26	18.4397
CENPB	0	genome.wustl.edu	37	20	3766632	3766632	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	20	3766632	3766632	C	T	SNP	CENPB	ENST00000379751	human	ensembl	74_37	-1	known	missense	c.499	p.G167R	0.131	NULL	pfam_Centromere_CenpB_dimerisation,pfam_DDE_SF_endonuclease_CENPB-like,pfam_HTH_Psq,pfam_HTH_CenpB_DNA-bd_dom,superfamily_Homeodomain-like,smart_HTH_CenpB_DNA-bd_dom,pfscan_HTH_Psq	-	no_errors	CENPB	HGNC	ENSG00000125817				19	0	0	29	8	21.6216
MMP9	0	genome.wustl.edu	37	20	44639240	44639240	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	20	44639240	44639240	G	A	SNP	MMP9	ENST00000372330	human	ensembl	74_37	+1	known	missense	c.490	p.A164T	0.993	pfam_Pept_M10_metallopeptidase,smart_Peptidase_Metallo,prints_Pept_M10A	pfam_Pept_M10_metallopeptidase,pfam_FN_type2_col-bd,pfam_Hemopexin-like_repeat,pfam_PT,pfam_Peptidoglycan-bd-like,superfamily_Hemopexin-like_dom,superfamily_Kringle-like,superfamily_Peptidoglycan-bd-like,smart_Peptidase_Metallo,smart_FN_type2_col-bd,smart_Hemopexin-like_repeat,pfscan_FN_type2_col-bd,prints_Pept_M10A	-	no_errors	MMP9	HGNC	ENSG00000100985				37	0	0	43	10	18.8679
SLC2A10	0	genome.wustl.edu	37	20	45353775	45353775	+	Silent	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	20	45353775	45353775	C	T	SNP	SLC2A10	ENST00000359271	human	ensembl	74_37	+1	known	silent	c.100	p.L34	1.000	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,prints_Sugar/inositol_transpt	-	no_errors	SLC2A10	HGNC	ENSG00000197496				101	0	0	117	37	24.026
ZMYND8	0	genome.wustl.edu	37	20	45853197	45853197	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	20	45853197	45853197	G	A	SNP	ZMYND8	ENST00000536340	human	ensembl	74_37	-1	known	missense	c.3050	p.A1017V	1.000	NULL	pfam_DUF3544,pfam_Bromodomain,pfam_PWWP_dom,pfam_Znf_PHD-finger,pfam_Znf_MYND,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_Bromodomain,smart_PWWP_dom,pfscan_PWWP_dom,pfscan_Znf_MYND,pfscan_Znf_PHD-finger,pfscan_Bromodomain	-	no_errors	ZMYND8	HGNC	ENSG00000101040				182	0	0	210	56	21.0526
ADNP	0	genome.wustl.edu	37	20	49510461	49510461	+	Silent	SNP	G	G	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	20	49510461	49510461	G	T	SNP	ADNP	ENST00000349014	human	ensembl	74_37	-1	known	silent	c.790	p.R264	0.998	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	ADNP	HGNC	ENSG00000101126				83	0	0	73	17	18.8889
ZNF217	0	genome.wustl.edu	37	20	52199236	52199236	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	20	52199236	52199236	C	T	SNP	ZNF217	ENST00000302342	human	ensembl	74_37	-1	known	missense	c.130	p.A44T	0.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF217	HGNC	ENSG00000171940				101	0	0	128	22	14.6667
CTCFL	0	genome.wustl.edu	37	20	56099084	56099084	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	20	56099084	56099084	C	T	SNP	CTCFL	ENST00000423479	human	ensembl	74_37	-1	known	missense	c.178	p.V60I	0.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	CTCFL	HGNC	ENSG00000124092				377	1	0.26455	402	81	16.7702
APCDD1L	0	genome.wustl.edu	37	20	57035905	57035905	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	20	57035905	57035905	T	C	SNP	APCDD1L	ENST00000439429	human	ensembl	74_37	-1	known	missense	c.1480	p.I494V	0.000	NULL	NULL	-	no_errors	APCDD1L	HGNC	ENSG00000198768				78	0	0	79	22	21.7822
LAMA5	0	genome.wustl.edu	37	20	60895632	60895632	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	20	60895632	60895632	G	A	SNP	LAMA5	ENST00000252999	human	ensembl	74_37	-1	known	missense	c.6742	p.R2248W	0.000	pfam_Laminin_I	pfam_EGF_laminin,pfam_Laminin_I,pfam_Laminin_G,pfam_Laminin_N,pfam_Laminin_II,pfam_Laminin_B_type_IV,superfamily_ConA-like_lec_gl_sf,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N,pfscan_TNFR/NGFR_Cys_rich_reg	-	no_errors	LAMA5	HGNC	ENSG00000130702				16	0	0	27	3	10
SLC17A9	0	genome.wustl.edu	37	20	61598484	61598484	+	RNA	SNP	C	C	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	20	61598484	61598484	C	A	SNP	SLC17A9	ENST00000488738	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	SLC17A9	HGNC	ENSG00000101194				16	0	0	9	6	40
CHRNA4	0	genome.wustl.edu	37	20	61981936	61981936	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	20	61981936	61981936	G	A	SNP	CHRNA4	ENST00000370263	human	ensembl	74_37	-1	known	missense	c.827	p.T276M	1.000	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,tigrfam_Neur_channel	pfam_Neurotrans-gated_channel_TM,pfam_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,prints_Nicotinic_acetylcholine_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	CHRNA4	HGNC	ENSG00000101204				82	0	0	120	26	17.8082
HAO1	0	genome.wustl.edu	37	20	7875863	7875863	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	20	7875863	7875863	C	T	SNP	HAO1	ENST00000378789	human	ensembl	74_37	-1	known	missense	c.730	p.A244T	1.000	pfam_FMN-dep_DH,pirsf_Alpha-hydoxy_acid_DH_FMN	pfam_FMN-dep_DH,pfam_Glu_synth_centr_C,pirsf_Alpha-hydoxy_acid_DH_FMN	-	no_errors	HAO1	HGNC	ENSG00000101323				133	0	0	150	30	16.6667
PLCB1	0	genome.wustl.edu	37	20	8696934	8696934	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	20	8696934	8696934	C	T	SNP	PLCB1	ENST00000338037	human	ensembl	74_37	+1	known	missense	c.1274	p.A425V	1.000	pirsf_PLC-beta,pfam_PLipase_C_PInositol-sp_X_dom,superfamily_PLC-like_Pdiesterase_TIM-brl,smart_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_PInositol-sp_X_dom	pirsf_PLC-beta,pfam_PLC-beta_C,pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_dom,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_dom,prints_Pinositol_PLipase_C,pfscan_C2_dom,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y	-	no_errors	PLCB1	HGNC	ENSG00000182621				74	0	0	75	16	17.5824
GRIK1	0	genome.wustl.edu	37	21	31311854	31311854	+	RNA	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	21	31311854	31311854	G	A	SNP	GRIK1	ENST00000472429	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.090	-	-	-	no_errors	GRIK1	HGNC	ENSG00000171189				33	0	0	20	10	33.3333
KRTAP24-1	0	genome.wustl.edu	37	21	31655009	31655009	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	21	31655009	31655009	C	T	SNP	KRTAP24-1	ENST00000340345	human	ensembl	74_37	-1	known	missense	c.242	p.C81Y	0.065	pfam_KRTAP_PMG	pfam_KRTAP_PMG	-	no_errors	KRTAP24-1	HGNC	ENSG00000188694				102	0	0	138	32	18.8235
KRTAP6-3	0	genome.wustl.edu	37	21	31965058	31965058	+	Silent	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	21	31965058	31965058	C	T	SNP	KRTAP6-3	ENST00000391624	human	ensembl	74_37	+1	known	silent	c.273	p.C91	0.445	NULL	NULL	-	no_errors	KRTAP6-3	HGNC	ENSG00000212938				17	0	0	26	5	16.129
SYNJ1	0	genome.wustl.edu	37	21	34058147	34058147	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	21	34058147	34058147	C	A	SNP	SYNJ1	ENST00000433931	human	ensembl	74_37	-1	known	missense	c.1146	p.K382N	0.436	pfam_Syja_N,pfscan_Syja_N	pfam_Syja_N,pfam_Endo/exonuclease/phosphatase,pfam_DUF1866,superfamily_Endo/exonuclease/phosphatase,smart_IPPc,pfscan_RRM_dom,pfscan_Syja_N	-	no_errors	SYNJ1	HGNC	ENSG00000159082				126	0	0	111	27	19.5652
DSCAM	0	genome.wustl.edu	37	21	41385022	41385022	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	21	41385022	41385022	A	G	SNP	DSCAM	ENST00000400454	human	ensembl	74_37	-1	known	missense	c.5978	p.L1993P	1.000	NULL	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub2,smart_Ig_sub,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	DSCAM	HGNC	ENSG00000171587				53	0	0	60	18	23.0769
DSCAM	0	genome.wustl.edu	37	21	41561090	41561090	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	21	41561090	41561090	G	A	SNP	DSCAM	ENST00000400454	human	ensembl	74_37	-1	known	missense	c.2432	p.A811V	1.000	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub2,smart_Ig_sub,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	DSCAM	HGNC	ENSG00000171587				148	0	0	162	37	18.593
TFF2	0	genome.wustl.edu	37	21	43771089	43771089	+	RNA	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	21	43771089	43771089	G	A	SNP	TFF2	ENST00000463771	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	TFF2	HGNC	ENSG00000160181				75	0	0	79	17	17.7083
CRYAA	0	genome.wustl.edu	37	21	44589335	44589335	+	Silent	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	21	44589335	44589335	C	T	SNP	CRYAA	ENST00000291554	human	ensembl	74_37	+1	known	silent	c.126	p.S42	1.000	pfam_Alpha-crystallin_N	pfam_a-crystallin/Hsp20_dom,pfam_Alpha-crystallin_N,superfamily_HSP20-like_chaperone,pfscan_a-crystallin/Hsp20_dom,prints_Alpha-crystallin/HSP	-	no_errors	CRYAA	HGNC	ENSG00000160202				265	0	0	275	63	18.6391
KRTAP10-2	0	genome.wustl.edu	37	21	45971248	45971248	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	21	45971248	45971248	C	T	SNP	KRTAP10-2	ENST00000391621	human	ensembl	74_37	-1	known	missense	c.94	p.G32S	0.999	NULL	NULL	-	no_errors	KRTAP10-2	HGNC	ENSG00000205445				130	0	0	153	33	17.7419
KRTAP12-2	0	genome.wustl.edu	37	21	46086433	46086433	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	21	46086433	46086433	C	A	SNP	KRTAP12-2	ENST00000360770	human	ensembl	74_37	-1	known	missense	c.371	p.G124V	0.104	pfam_KRTAP_PMG	pfam_KRTAP_PMG	-	no_errors	KRTAP12-2	HGNC	ENSG00000221864				117	0	0	104	23	18.1102
COL18A1	0	genome.wustl.edu	37	21	46924384	46924384	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	21	46924384	46924384	G	A	SNP	COL18A1	ENST00000359759	human	ensembl	74_37	+1	known	missense	c.4027	p.G1343R	0.924	NULL	pfam_Collagenase_NC10/endostatin,pfam_DUF959_COL18_N,pfam_Collagen,pfam_Frizzled_dom,superfamily_C-type_lectin_fold,superfamily_ConA-like_lec_gl_sf,superfamily_Frizzled_dom,smart_Frizzled_dom,smart_Laminin_G,pfscan_Frizzled_dom	-	no_errors	COL18A1	HGNC	ENSG00000182871				32	0	0	32	6	15.7895
MCM3AP	0	genome.wustl.edu	37	21	47685900	47685900	+	Silent	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	21	47685900	47685900	G	A	SNP	MCM3AP	ENST00000291688	human	ensembl	74_37	-1	known	silent	c.2970	p.I990	0.000	NULL	pfam_SAC3/GANP/Nin1/mts3/eIF-3-p25	-	no_errors	MCM3AP	HGNC	ENSG00000160294				233	0	0	262	66	20.122
TRMT2A	0	genome.wustl.edu	37	22	20100722	20100722	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	22	20100722	20100722	C	T	SNP	TRMT2A	ENST00000252136	human	ensembl	74_37	-1	known	missense	c.1468	p.E490K	0.998	pfam_U5_MeTrfase,pfam_RNA_methylase_dom,pfam_RNA_MeTrfase_RsmD,pfam_Methyltransf_11,pfam_tRNA_(Gua-N-7)_MeTrfase,pfam_UbiE/COQ5_MeTrFase	pfam_U5_MeTrfase,pfam_PCMT,pfam_Small_mtfrase_dom,pfam_RNA_methylase_dom,pfam_RNA_MeTrfase_RsmD,pfam_Methyltransf_11,pfam_tRNA_(Gua-N-7)_MeTrfase,pfam_UbiE/COQ5_MeTrFase,pfscan_RRM_dom	-	no_errors	TRMT2A	HGNC	ENSG00000099899				81	0	0	86	23	21.1009
SCARF2	0	genome.wustl.edu	37	22	20780227	20780227	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	22	20780227	20780227	C	T	SNP	SCARF2	ENST00000405555	human	ensembl	74_37	-1	known	missense	c.2036	p.R679H	0.000	NULL	pfam_EGF_laminin,superfamily_Growth_fac_rcpt_N_dom,smart_EGF_laminin,smart_EG-like_dom,pfscan_EG-like_dom	-	no_errors	SCARF2	HGNC	ENSG00000244486				35	0	0	37	11	22.9167
KLHL22	0	genome.wustl.edu	37	22	20800951	20800951	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	22	20800951	20800951	C	T	SNP	KLHL22	ENST00000328879	human	ensembl	74_37	-1	known	missense	c.1318	p.A440T	1.000	pfam_Kelch_1,smart_Kelch_1,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BTB_POZ,pfam_Kelch_2,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL22	HGNC	ENSG00000099910				112	0	0	130	24	15.5844
SLC7A4	0	genome.wustl.edu	37	22	21384385	21384385	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	22	21384385	21384385	C	T	SNP	SLC7A4	ENST00000382932	human	ensembl	74_37	-1	known	missense	c.1238	p.R413H	1.000	pfam_AA-permease/SLC12A_dom,pirsf_AA/rel_permease1	pfam_AA-permease/SLC12A_dom,pirsf_AA/rel_permease1	-	no_errors	SLC7A4	HGNC	ENSG00000099960				26	0	0	39	5	11.3636
TOP3B	0	genome.wustl.edu	37	22	22319678	22319678	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	22	22319678	22319678	G	A	SNP	TOP3B	ENST00000357179	human	ensembl	74_37	-1	known	missense	c.922	p.R308C	0.979	pfam_Topo_IA_cen,superfamily_Topo_IA_core_domain,smart_Topo_IA_DNA-bd	pfam_Topo_IA_cen,pfam_Toprim_domain,superfamily_Topo_IA_core_domain,smart_Toprim_domain,smart_Topo_IA_2,smart_Topo_IA_DNA-bd,prints_Topo_IA	-	no_errors	TOP3B	HGNC	ENSG00000100038				33	0	0	26	8	23.5294
ENSG00000207834	0	genome.wustl.edu	37	22	23006960	23006960	+	RNA	SNP	C	C	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	22	23006960	23006960	C	A	SNP	ENSG00000207834	ENST00000385099	human	ensembl	74_37	+1	novel	rna	NULL	NULL	0.876	-	-	-	no_errors	D86994.2	Clone_based_ensembl_gene	ENSG00000207834				8	0	0	19	6	24
ENSG00000207834	0	genome.wustl.edu	37	22	23006961	23006961	+	RNA	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	22	23006961	23006961	C	T	SNP	ENSG00000207834	ENST00000385099	human	ensembl	74_37	+1	novel	rna	NULL	NULL	0.759	-	-	-	no_errors	D86994.2	Clone_based_ensembl_gene	ENSG00000207834				8	0	0	19	6	24
GNAZ	0	genome.wustl.edu	37	22	23438372	23438372	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	22	23438372	23438372	G	A	SNP	GNAZ	ENST00000248996	human	ensembl	74_37	+1	known	missense	c.490	p.A164T	0.890	pfam_Gprotein_alpha_su,superfamily_P-loop_NTPase,superfamily_GproteinA_insert,smart_Gprotein_alpha_su	pfam_Gprotein_alpha_su,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,superfamily_GproteinA_insert,smart_Gprotein_alpha_su,prints_Gprotein_alpha_su,prints_Gprotein_alpha_I	-	no_errors	GNAZ	HGNC	ENSG00000128266				94	0	0	144	27	15.7895
BCR	0	genome.wustl.edu	37	22	23523754	23523754	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	22	23523754	23523754	C	A	SNP	BCR	ENST00000305877	human	ensembl	74_37	+1	known	missense	c.607	p.L203M	1.000	NULL	pfam_RhoGAP_dom,pfam_Bcr-Abl_oncoprot_oligo,pfam_DH-domain,pfam_C2_dom,pfam_Pleckstrin_homology,superfamily_Rho_GTPase_activation_prot,superfamily_DH-domain,superfamily_Bcr-Abl_oncoprot_oligo,superfamily_C2_dom,smart_DH-domain,smart_Pleckstrin_homology,smart_C2_dom,smart_RhoGAP_dom,pfscan_C2_dom,pfscan_Pleckstrin_homology,pfscan_RhoGAP_dom,pfscan_DH-domain	-	no_errors	BCR	HGNC	ENSG00000186716				96	0	0	117	30	20.4082
ZDHHC8P1	0	genome.wustl.edu	37	22	23741971	23741971	+	RNA	SNP	C	C	G			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	22	23741971	23741971	C	G	SNP	ZDHHC8P1	ENST00000255890	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.867	-	-	-	no_errors	ZDHHC8P1	HGNC	ENSG00000133519				10	0	0	19	8	29.6296
GGT1	0	genome.wustl.edu	37	22	25024147	25024147	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	22	25024147	25024147	C	T	SNP	GGT1	ENST00000248923	human	ensembl	74_37	+1	known	missense	c.1436	p.T479M	1.000	pfam_GGT_peptidase,prints_GGT_peptidase,tigrfam_GGT_peptidase	pfam_GGT_peptidase,prints_GGT_peptidase,tigrfam_GGT_peptidase	-	no_errors	GGT1	HGNC	ENSG00000100031				137	0	0	177	30	14.4928
LIF	0	genome.wustl.edu	37	22	30639661	30639661	+	Silent	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	22	30639661	30639661	G	A	SNP	LIF	ENST00000249075	human	ensembl	74_37	-1	known	silent	c.588	p.A196	0.000	pfam_Leukemia_IF/oncostatin,superfamily_4_helix_cytokine-like_core	pfam_Leukemia_IF/oncostatin,superfamily_4_helix_cytokine-like_core,smart_Leukemia_IF/oncostatin,prints_Leukemia_IF	-	no_errors	LIF	HGNC	ENSG00000128342				136	0	0	172	41	19.2488
OSM	0	genome.wustl.edu	37	22	30661062	30661062	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	22	30661062	30661062	G	A	SNP	OSM	ENST00000215781	human	ensembl	74_37	-1	known	missense	c.106	p.R36C	0.000	pfam_Leukemia_IF/oncostatin,superfamily_4_helix_cytokine-like_core,smart_Leukemia_IF/oncostatin	pfam_Leukemia_IF/oncostatin,superfamily_4_helix_cytokine-like_core,smart_Leukemia_IF/oncostatin	-	no_errors	OSM	HGNC	ENSG00000099985				221	0	0	264	28	9.58904
GAL3ST1	0	genome.wustl.edu	37	22	30951307	30951307	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	22	30951307	30951307	A	G	SNP	GAL3ST1	ENST00000338911	human	ensembl	74_37	-1	known	missense	c.905	p.M302T	0.393	pfam_Gal-3-0_sulfotransfrase	pfam_Gal-3-0_sulfotransfrase,superfamily_P-loop_NTPase	-	no_errors	GAL3ST1	HGNC	ENSG00000128242				25	0	0	46	12	20.6897
MCM5	0	genome.wustl.edu	37	22	35808554	35808554	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	22	35808554	35808554	G	A	SNP	MCM5	ENST00000216122	human	ensembl	74_37	+1	known	missense	c.971	p.R324H	0.994	pfam_MCM_DNA-dep_ATPase,smart_MCM_DNA-dep_ATPase	pfam_MCM_DNA-dep_ATPase,superfamily_NA-bd_OB-fold,superfamily_P-loop_NTPase,smart_MCM_DNA-dep_ATPase,pfscan_MCM_DNA-dep_ATPase,prints_MCM5,prints_MCM_DNA-dep_ATPase	-	no_errors	MCM5	HGNC	ENSG00000100297				152	0	0	169	42	19.9052
MYH9	0	genome.wustl.edu	37	22	36723530	36723530	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	22	36723530	36723530	C	T	SNP	MYH9	ENST00000216181	human	ensembl	74_37	-1	known	missense	c.494	p.R165Q	1.000	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,superfamily_Regulat_G_prot_signal_superfam,superfamily_Prefoldin,superfamily_Myosin_S1_N,superfamily_STAT_TF_coiled-coil,superfamily_tRNA-bd_arm,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH9	HGNC	ENSG00000100345				52	0	0	66	18	21.4286
FOXRED2	0	genome.wustl.edu	37	22	36902310	36902310	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	22	36902310	36902310	G	A	SNP	FOXRED2	ENST00000216187	human	ensembl	74_37	-1	known	missense	c.160	p.R54C	0.905	pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD	pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD	-	no_errors	FOXRED2	HGNC	ENSG00000100350				41	0	0	47	6	11.3208
TRIOBP	0	genome.wustl.edu	37	22	38130975	38130975	+	Silent	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	22	38130975	38130975	G	A	SNP	TRIOBP	ENST00000406386	human	ensembl	74_37	+1	known	silent	c.4632	p.A1544	0.000	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	TRIOBP	HGNC	ENSG00000100106				121	0	0	161	37	18.6869
APOBEC3G	0	genome.wustl.edu	37	22	39477083	39477083	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	22	39477083	39477083	C	T	SNP	APOBEC3G	ENST00000407997	human	ensembl	74_37	+1	known	missense	c.317	p.T106M	0.000	pfam_APOBEC_N,superfamily_Cytidine_deaminase-like	pfam_APOBEC_N,pfam_APOBEC_C,superfamily_Cytidine_deaminase-like	-	no_errors	APOBEC3G	HGNC	ENSG00000239713				127	0	0	138	29	17.3653
RPL3	0	genome.wustl.edu	37	22	39710758	39710758	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	22	39710758	39710758	C	T	SNP	RPL3	ENST00000216146	human	ensembl	74_37	-1	known	missense	c.782	p.R261H	1.000	pfam_Ribosomal_L3,superfamily_Transl_B-barrel	pfam_Ribosomal_L3,superfamily_Transl_B-barrel	-	no_errors	RPL3	HGNC	ENSG00000100316				83	0	0	98	24	19.6721
TCF20	0	genome.wustl.edu	37	22	42608248	42608248	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	22	42608248	42608248	G	A	SNP	TCF20	ENST00000359486	human	ensembl	74_37	-1	known	missense	c.3064	p.R1022W	0.895	NULL	smart_Znf_PHD	-	no_errors	TCF20	HGNC	ENSG00000100207				89	0	0	99	17	14.6552
PACSIN2	0	genome.wustl.edu	37	22	43272302	43272302	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	22	43272302	43272302	C	T	SNP	PACSIN2	ENST00000263246	human	ensembl	74_37	-1	known	missense	c.1189	p.D397N	1.000	superfamily_SH3_domain	pfam_FCH_dom,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_FCH_dom,smart_SH3_domain,pfscan_FCH_dom,pfscan_SH3_domain,prints_SH3_domain	-	no_errors	PACSIN2	HGNC	ENSG00000100266				72	0	0	120	21	14.8936
ATXN10	0	genome.wustl.edu	37	22	46085740	46085740	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	22	46085740	46085740	C	T	SNP	ATXN10	ENST00000252934	human	ensembl	74_37	+1	known	missense	c.265	p.R89C	0.612	superfamily_ARM-type_fold	pfam_Ataxin-10_domain,superfamily_ARM-type_fold	-	no_errors	ATXN10	HGNC	ENSG00000130638				93	0	0	93	18	16.2162
CELSR1	0	genome.wustl.edu	37	22	46792521	46792521	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	22	46792521	46792521	C	T	SNP	CELSR1	ENST00000262738	human	ensembl	74_37	-1	known	missense	c.5824	p.G1942R	1.000	smart_EG-like_dom,pfscan_EG-like_dom	pfam_Cadherin,pfam_DUF3497,pfam_Laminin_G,pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_EG-like_dom,pfam_EGF_laminin,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,smart_EGF_laminin,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_GPS_dom,pfscan_Laminin_G,pfscan_Cadherin,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_Cadherin,prints_GPCR_2_secretin-like	-	no_errors	CELSR1	HGNC	ENSG00000075275				41	0	0	45	13	22.4138
PANX2	0	genome.wustl.edu	37	22	50615987	50615987	+	Silent	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	22	50615987	50615987	G	A	SNP	PANX2	ENST00000395842	human	ensembl	74_37	+1	known	silent	c.846	p.P282	0.530	pfscan_Innexin	pfam_Innexin,pfscan_Innexin	-	no_errors	PANX2	HGNC	ENSG00000073150				50	0	0	58	19	24.6753
SELO	0	genome.wustl.edu	37	22	50649342	50649342	+	Splice_Site	SNP	T	T	C			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	22	50649342	50649342	T	C	SNP	SELO	ENST00000492092	human	ensembl	74_37	+1	known	splice_site	c.NULL	NULL	1.000	-	-	-	no_errors	SELO	Uniprot_gn	ENSG00000073169				193	0	0	225	52	18.7726
SBF1	0	genome.wustl.edu	37	22	50885774	50885774	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	22	50885774	50885774	C	T	SNP	SBF1	ENST00000380817	human	ensembl	74_37	-1	known	missense	c.5560	p.V1854M	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_SBF2,pfam_DENN_dom,pfam_uDENN_dom,pfam_Myotubularin-like_Pase_dom,pfam_dDENN_dom,pfam_GRAM,pfam_Pleckstrin_homology,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,smart_GRAM,smart_Pleckstrin_homology,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom,pfscan_Pleckstrin_homology	-	no_errors	SBF1	HGNC	ENSG00000100241				122	0	0	146	30	17.0455
RPL23AP82	0	genome.wustl.edu	37	22	51237224	51237224	+	RNA	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	22	51237224	51237224	G	A	SNP	RPL23AP82	ENST00000462238	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.995	-	-	-	no_errors	AC002055.4	Clone_based_vega_gene	ENSG00000184319				65	0	0	73	17	18.8889
HRH1	0	genome.wustl.edu	37	3	11301418	11301418	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	3	11301418	11301418	C	A	SNP	HRH1	ENST00000397056	human	ensembl	74_37	+1	known	missense	c.695	p.P232H	0.983	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Histamine_H1_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Histamine_H1_rcpt,prints_GPCR_Rhodpsn,prints_Musac_Ach_rcpt	-	no_errors	HRH1	HGNC	ENSG00000196639				129	0	0	133	39	22.6744
TAMM41	0	genome.wustl.edu	37	3	11871205	11871205	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	3	11871205	11871205	G	A	SNP	TAMM41	ENST00000273037	human	ensembl	74_37	-1	known	missense	c.545	p.A182V	0.999	pfam_Mmp37,pirsf_Mmp37	pfam_Mmp37,pirsf_Mmp37	-	no_errors	TAMM41	HGNC	ENSG00000144559				219	1	0.454545	232	54	18.8811
POLQ	0	genome.wustl.edu	37	3	121207935	121207935	+	Silent	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	3	121207935	121207935	C	T	SNP	POLQ	ENST00000264233	human	ensembl	74_37	-1	known	silent	c.3843	p.Q1281	0.098	NULL	pfam_DNA-dir_DNA_pol_A_palm_dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,superfamily_RNaseH-like_dom,smart_Helicase_ATP-bd,smart_Helicase_C,smart_DNA-dir_DNA_pol_A_palm_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,prints_DNA_polymerase_A	-	no_errors	POLQ	HGNC	ENSG00000051341				211	0	0	224	73	24.5791
SYN2	0	genome.wustl.edu	37	3	12211375	12211375	+	RNA	SNP	C	C	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	3	12211375	12211375	C	A	SNP	SYN2	ENST00000425297	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	SYN2	HGNC	ENSG00000157152				22	0	0	22	4	15.3846
CCDC14	0	genome.wustl.edu	37	3	123666111	123666111	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	3	123666111	123666111	G	C	SNP	CCDC14	ENST00000488653	human	ensembl	74_37	-1	known	missense	c.884	p.A295G	0.224	NULL	NULL	-	no_errors	CCDC14	HGNC	ENSG00000175455				76	0	0	87	23	20.9091
SNX4	0	genome.wustl.edu	37	3	125216990	125216990	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	3	125216990	125216990	C	T	SNP	SNX4	ENST00000251775	human	ensembl	74_37	-1	known	nonsense	c.312	p.W104*	1.000	pfam_Phox,superfamily_Phox,smart_Phox,pfscan_Phox	pfam_Phox,superfamily_Phox,smart_Phox,pfscan_Phox	-	no_errors	SNX4	HGNC	ENSG00000114520				87	0	0	120	43	26.3804
TSEN2	0	genome.wustl.edu	37	3	12545181	12545181	+	Silent	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	3	12545181	12545181	C	T	SNP	TSEN2	ENST00000284995	human	ensembl	74_37	+1	known	silent	c.729	p.I243	0.000	pirsf_tRNA_splic_SEN2	pfam_tRNA_intron_Endonuc_cat-like,pfam_tRNA_intron_Endonuc_N,superfamily_tRNA_intron_Endonuc_cat-like,pirsf_tRNA_splic_SEN2	-	no_errors	TSEN2	HGNC	ENSG00000154743				33	0	0	34	11	24.4444
KLF15	0	genome.wustl.edu	37	3	126071104	126071104	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	3	126071104	126071104	A	G	SNP	KLF15	ENST00000296233	human	ensembl	74_37	-1	known	missense	c.662	p.L221P	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	KLF15	HGNC	ENSG00000163884				23	0	0	16	7	30.4348
PLXNA1	0	genome.wustl.edu	37	3	126736387	126736387	+	Silent	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	3	126736387	126736387	C	T	SNP	PLXNA1	ENST00000393409	human	ensembl	74_37	+1	known	silent	c.3396	p.N1132	0.995	superfamily_Ig_E-set,smart_IPT	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_Semap_dom,pfam_IPT,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_IPT,pfscan_Semap_dom	-	no_errors	PLXNA1	HGNC	ENSG00000114554				279	0	0	331	80	19.4647
DNAJB8	0	genome.wustl.edu	37	3	128181483	128181483	+	Silent	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	3	128181483	128181483	G	A	SNP	DNAJB8	ENST00000319153	human	ensembl	74_37	-1	known	silent	c.606	p.N202	0.997	NULL	pfam_DnaJ_domain,superfamily_DnaJ_domain,smart_DnaJ_domain,pfscan_DnaJ_domain,prints_DnaJ_domain	-	no_errors	DNAJB8	HGNC	ENSG00000179407				181	0	0	176	51	22.467
CAND2	0	genome.wustl.edu	37	3	12869032	12869032	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	3	12869032	12869032	C	A	SNP	CAND2	ENST00000456430	human	ensembl	74_37	+1	known	missense	c.3304	p.L1102M	1.000	pfam_TATA-bd_TIP120,superfamily_ARM-type_fold	pfam_TATA-bd_TIP120,pfam_HEAT,superfamily_ARM-type_fold	-	no_errors	CAND2	HGNC	ENSG00000144712				140	0	0	155	36	18.8482
FAM86HP	0	genome.wustl.edu	37	3	129821709	129821709	+	RNA	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	3	129821709	129821709	G	A	SNP	FAM86HP	ENST00000511564	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.460	-	-	-	no_errors	FAM86HP	HGNC	ENSG00000253540				88	0	0	119	19	13.7681
TOPBP1	0	genome.wustl.edu	37	3	133327401	133327401	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	3	133327401	133327401	T	C	SNP	TOPBP1	ENST00000260810	human	ensembl	74_37	-1	known	missense	c.4403	p.Y1468C	1.000	superfamily_BRCT_dom	pfam_BRCT_dom,superfamily_BRCT_dom,superfamily_Secretoglobin,smart_BRCT_dom,pfscan_BRCT_dom	-	no_errors	TOPBP1	HGNC	ENSG00000163781				123	0	0	131	25	16.0256
NUP210	0	genome.wustl.edu	37	3	13381471	13381471	+	Silent	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	3	13381471	13381471	G	A	SNP	NUP210	ENST00000254508	human	ensembl	74_37	-1	known	silent	c.3354	p.S1118	0.000	pfam_Big_2,superfamily_Invasin/intimin_cell_adhesion,smart_Big_2	pfam_Big_2,superfamily_Invasin/intimin_cell_adhesion,superfamily_Cadherin-like,smart_Big_2	-	no_errors	NUP210	HGNC	ENSG00000132182				239	0	0	229	77	25.1634
NCK1	0	genome.wustl.edu	37	3	136665004	136665004	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	3	136665004	136665004	T	C	SNP	NCK1	ENST00000288986	human	ensembl	74_37	+1	known	missense	c.806	p.I269T	1.000	pirsf_Cytoplasmic_NCK	pfam_SH3_domain,pfam_SH3_2,pfam_SH2,superfamily_SH3_domain,smart_SH3_domain,smart_SH2,pirsf_Cytoplasmic_NCK,pfscan_SH2,pfscan_SH3_domain,prints_SH2,prints_SH3_domain	-	no_errors	NCK1	HGNC	ENSG00000158092				287	0	0	292	57	16.3324
RBP1	0	genome.wustl.edu	37	3	139257784	139257784	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	3	139257784	139257784	G	A	SNP	RBP1	ENST00000232219	human	ensembl	74_37	-1	known	missense	c.277	p.R93C	1.000	pfam_Lipocln_cytosolic_FA-bd_dom,superfamily_Calycin-like	pfam_Lipocln_cytosolic_FA-bd_dom,superfamily_Calycin-like,prints_Fatty_acid-bd	-	no_errors	RBP1	HGNC	ENSG00000114115				159	0	0	178	28	13.5922
ACPL2	0	genome.wustl.edu	37	3	141011879	141011879	+	Silent	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	3	141011879	141011879	C	T	SNP	ACPL2	ENST00000286353	human	ensembl	74_37	+1	known	silent	c.1275	p.G425	0.001	NULL	pfam_His_Pase_superF_clade-2	-	no_errors	ACPL2	HGNC	ENSG00000155893				154	0	0	186	44	19.1304
RASA2	0	genome.wustl.edu	37	3	141295889	141295889	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	3	141295889	141295889	C	T	SNP	RASA2	ENST00000452898	human	ensembl	74_37	+1	known	missense	c.1531	p.R511C	1.000	pfam_RasGAP,superfamily_Rho_GTPase_activation_prot,smart_RasGAP,pfscan_RasGAP	pfam_RasGAP,pfam_C2_dom,pfam_Pleckstrin_homology,pfam_Znf_Btk_motif,superfamily_Rho_GTPase_activation_prot,superfamily_C2_dom,smart_C2_dom,smart_RasGAP,smart_Pleckstrin_homology,smart_Znf_Btk_motif,pfscan_C2_dom,pfscan_Pleckstrin_homology,pfscan_Znf_Btk_motif,pfscan_RasGAP,prints_Znf_Btk_motif	-	no_errors	RASA2	HGNC	ENSG00000155903				219	1	0.454545	211	45	17.5781
XRN1	0	genome.wustl.edu	37	3	142166864	142166864	+	RNA	SNP	T	T	C			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	3	142166864	142166864	T	C	SNP	XRN1	ENST00000465074	human	ensembl	74_37	-1	putative	rna	NULL	NULL	1.000	-	-	-	no_errors	XRN1	HGNC	ENSG00000114127				35	0	0	53	11	17.1875
ANKRD28	0	genome.wustl.edu	37	3	15765943	15765943	+	Silent	SNP	T	T	G			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	3	15765943	15765943	T	G	SNP	ANKRD28	ENST00000383777	human	ensembl	74_37	-1	known	silent	c.738	p.A246	1.000	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	ANKRD28	HGNC	ENSG00000206560				17	0	0	18	3	14.2857
GPR160	0	genome.wustl.edu	37	3	169802275	169802275	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	3	169802275	169802275	G	A	SNP	GPR160	ENST00000355897	human	ensembl	74_37	+1	known	missense	c.515	p.R172H	0.000	pfscan_GPCR_Rhodpsn_7TM	pfscan_GPCR_Rhodpsn_7TM	-	no_errors	GPR160	HGNC	ENSG00000173890				73	0	0	91	22	19.469
USP13	0	genome.wustl.edu	37	3	179474922	179474922	+	RNA	SNP	A	A	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	3	179474922	179474922	A	T	SNP	USP13	ENST00000482333	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	USP13	HGNC	ENSG00000058056				122	0	0	143	25	14.881
PEX5L	0	genome.wustl.edu	37	3	179519507	179519507	+	RNA	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	3	179519507	179519507	G	A	SNP	PEX5L	ENST00000467440	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.994	-	-	-	no_errors	PEX5L	HGNC	ENSG00000114757				22	0	0	30	7	18.9189
CCDC39	0	genome.wustl.edu	37	3	180364954	180364954	+	Silent	SNP	A	A	G			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	3	180364954	180364954	A	G	SNP	CCDC39	ENST00000442201	human	ensembl	74_37	-1	known	silent	c.1440	p.L480	1.000	NULL	superfamily_Prefoldin,superfamily_tRNA-bd_arm	-	no_errors	CCDC39	HGNC	ENSG00000145075				57	0	0	53	14	20.8955
FAM131A	0	genome.wustl.edu	37	3	184062384	184062384	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	3	184062384	184062384	G	A	SNP	FAM131A	ENST00000383847	human	ensembl	74_37	+1	known	missense	c.727	p.D243N	1.000	NULL	NULL	-	no_errors	FAM131A	HGNC	ENSG00000175182				161	0	0	178	51	22.2707
IGF2BP2	0	genome.wustl.edu	37	3	185363326	185363326	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	3	185363326	185363326	C	T	SNP	IGF2BP2	ENST00000382199	human	ensembl	74_37	-1	known	missense	c.1793	p.S598N	1.000	NULL	pfam_KH_dom_type_1,pfam_RRM_dom,smart_RRM_dom,smart_KH_dom,pfscan_KH_dom_type_1,pfscan_RRM_dom	-	no_errors	IGF2BP2	HGNC	ENSG00000073792				73	0	0	118	28	19.1781
BCL6	0	genome.wustl.edu	37	3	187447327	187447327	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	3	187447327	187447327	C	T	SNP	BCL6	ENST00000232014	human	ensembl	74_37	-1	known	missense	c.866	p.R289Q	1.000	NULL	pfam_BTB_POZ,pfam_Znf_C2H2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	BCL6	HGNC	ENSG00000113916				166	0	0	188	51	21.3389
CLDN1	0	genome.wustl.edu	37	3	190030818	190030818	+	Silent	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	3	190030818	190030818	C	T	SNP	CLDN1	ENST00000295522	human	ensembl	74_37	-1	known	silent	c.231	p.L77	0.923	pfam_PMP22/EMP/MP20/Claudin	pfam_PMP22/EMP/MP20/Claudin,prints_Claudin,prints_Claudin1,prints_Claudin14	-	no_errors	CLDN1	HGNC	ENSG00000163347				287	0	0	267	69	20.5357
KCNH8	0	genome.wustl.edu	37	3	19436644	19436644	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	3	19436644	19436644	C	T	SNP	KCNH8	ENST00000328405	human	ensembl	74_37	+1	known	missense	c.1018	p.R340C	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_cNMP-bd_dom,pfam_2pore_dom_K_chnl_dom,pfam_PAS_fold_3,pfam_PAS_4,pfam_PAS_fold,superfamily_cNMP-bd-like,superfamily_PAS,superfamily_tRNA-bd_arm,smart_PAC,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom,pfscan_PAS-assoc_C,prints_K_chnl_volt-dep_EAG/ELK/ERG,prints_K_chnl_volt-dep_ELK,prints_K_chnl_volt-dep_ERG,prints_K_chnl_volt-dep_EAG,tigrfam_PAS	-	no_errors	KCNH8	HGNC	ENSG00000183960				157	0	0	172	41	19.2488
PCYT1A	0	genome.wustl.edu	37	3	195975116	195975116	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	3	195975116	195975116	G	A	SNP	PCYT1A	ENST00000292823	human	ensembl	74_37	-1	known	missense	c.296	p.A99V	1.000	pfam_Cyt_trans-like,tigrfam_Cyt_trans-like	pfam_Cyt_trans-like,superfamily_NA-bd_OB-fold,tigrfam_Cyt_trans-like	-	no_errors	PCYT1A	HGNC	ENSG00000161217				185	0	0	165	48	22.5352
MFI2	0	genome.wustl.edu	37	3	196736547	196736547	+	Silent	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	3	196736547	196736547	G	A	SNP	MFI2	ENST00000296350	human	ensembl	74_37	-1	known	silent	c.1467	p.P489	0.967	pfam_Transferrin_fam,smart_Transferrin_fam,pirsf_Transferrin	pfam_Transferrin_fam,smart_Transferrin_fam,pirsf_Transferrin,prints_Transferrin_fam	-	no_errors	MFI2	HGNC	ENSG00000163975				109	0	0	133	23	14.7436
ZNF385D	0	genome.wustl.edu	37	3	21552413	21552413	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	3	21552413	21552413	C	T	SNP	ZNF385D	ENST00000281523	human	ensembl	74_37	-1	known	missense	c.379	p.A127T	1.000	NULL	pfam_Znf_C2H2_jaz,smart_Znf_U1,smart_Znf_C2H2-like	-	no_errors	ZNF385D	HGNC	ENSG00000151789				137	0	0	157	40	20.3046
MLH1	0	genome.wustl.edu	37	3	37090086	37090086	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	3	37090086	37090086	C	T	SNP	MLH1	ENST00000231790	human	ensembl	74_37	+1	known	nonsense	c.1975	p.R659*	1.000	NULL	pfam_DNA_mismatch_repair_C,pfam_HATPase_ATP-bd,superfamily_HATPase_ATP-bd,superfamily_Ribosomal_S5_D2-typ_fold,tigrfam_DNA_mismatch_repair_N	-	no_errors	MLH1	HGNC	ENSG00000076242				70	0	0	84	21	20
CTDSPL	0	genome.wustl.edu	37	3	37998618	37998618	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	3	37998618	37998618	T	C	SNP	CTDSPL	ENST00000273179	human	ensembl	74_37	+1	known	missense	c.251	p.V84A	1.000	NULL	pfam_NIF,superfamily_HAD-like_dom,smart_NIF,pfscan_NIF,tigrfam_Dullard_phosphatase	-	no_errors	CTDSPL	HGNC	ENSG00000144677				82	0	0	82	15	15.4639
XIRP1	0	genome.wustl.edu	37	3	39227527	39227527	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	3	39227527	39227527	G	A	SNP	XIRP1	ENST00000340369	human	ensembl	74_37	-1	known	missense	c.3410	p.T1137I	0.970	NULL	pfam_Actin-binding_Xin_repeat	-	no_errors	XIRP1	HGNC	ENSG00000168334				184	0	0	184	39	17.4888
XCR1	0	genome.wustl.edu	37	3	46062693	46062693	+	Silent	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	3	46062693	46062693	C	T	SNP	XCR1	ENST00000309285	human	ensembl	74_37	-1	known	silent	c.747	p.T249	0.001	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Chemokine_XCR1,prints_GPCR_Rhodpsn,prints_Chemokine_rcpt,prints_Brdyknn_rcpt	-	no_errors	XCR1	HGNC	ENSG00000173578				89	0	0	93	16	14.6789
SHISA5	0	genome.wustl.edu	37	3	48510563	48510563	+	Silent	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	3	48510563	48510563	G	A	SNP	SHISA5	ENST00000296444	human	ensembl	74_37	-1	known	silent	c.666	p.P222	0.929	NULL	NULL	-	no_errors	SHISA5	HGNC	ENSG00000164054				77	0	0	120	31	20.5298
WDR6	0	genome.wustl.edu	37	3	49049119	49049119	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	3	49049119	49049119	G	A	SNP	WDR6	ENST00000395474	human	ensembl	74_37	+1	known	missense	c.242	p.R81Q	0.446	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_Quino_amine_DH_bsu,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR6	HGNC	ENSG00000178252				518	0	0	561	124	18.1022
AMT	0	genome.wustl.edu	37	3	49454819	49454819	+	RNA	SNP	G	G	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	3	49454819	49454819	G	T	SNP	AMT	ENST00000476226	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	AMT	HGNC	ENSG00000145020				126	0	0	148	37	20
DAG1	0	genome.wustl.edu	37	3	49568875	49568875	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	3	49568875	49568875	C	T	SNP	DAG1	ENST00000308775	human	ensembl	74_37	+1	known	missense	c.931	p.R311W	1.000	NULL	pfam_DAG1,superfamily_Alpha-dystroglycan_domain_2,superfamily_Cadherin-like,smart_Cadg	-	no_errors	DAG1	HGNC	ENSG00000173402				143	0	0	170	43	20.1878
ZMYND10	0	genome.wustl.edu	37	3	50379246	50379246	+	Silent	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	3	50379246	50379246	C	T	SNP	ZMYND10	ENST00000231749	human	ensembl	74_37	-1	known	silent	c.1116	p.A372	0.001	pirsf_UCP037948_Znf-MYND	pfam_Znf_MYND,pirsf_UCP037948_Znf-MYND,pfscan_Znf_MYND	-	no_errors	ZMYND10	HGNC	ENSG00000004838				67	0	0	94	32	25.3968
DOCK3	0	genome.wustl.edu	37	3	51273835	51273835	+	Silent	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	3	51273835	51273835	C	T	SNP	DOCK3	ENST00000266037	human	ensembl	74_37	+1	known	silent	c.1977	p.Y659	0.826	superfamily_ARM-type_fold	pfam_DOCK_C,pfam_SH3_2,superfamily_SH3_domain,superfamily_ARM-type_fold,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	DOCK3	HGNC	ENSG00000088538				95	0	0	95	14	12.844
RBM15B	0	genome.wustl.edu	37	3	51431126	51431126	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	3	51431126	51431126	G	A	SNP	RBM15B	ENST00000323686	human	ensembl	74_37	+1	known	missense	c.2296	p.A766T	1.000	pfam_SPOC_C,superfamily_SPOC_like_C_dom,pfscan_SPOC_met	pfam_RRM_dom,pfam_SPOC_C,superfamily_SPOC_like_C_dom,smart_RRM_dom,pfscan_SPOC_met,pfscan_RRM_dom	-	no_errors	RBM15B	HGNC	ENSG00000179837				103	0	0	127	43	25.2941
GPR62	0	genome.wustl.edu	37	3	51990299	51990299	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	3	51990299	51990299	C	T	SNP	GPR62	ENST00000322241	human	ensembl	74_37	+1	known	missense	c.631	p.R211C	0.117	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	-	no_errors	GPR62	HGNC	ENSG00000180929				20	0	0	16	7	30.4348
CCDC66	0	genome.wustl.edu	37	3	56651196	56651196	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	3	56651196	56651196	G	T	SNP	CCDC66	ENST00000394672	human	ensembl	74_37	+1	known	nonsense	c.1900	p.E634*	0.005	NULL	NULL	-	no_errors	CCDC66	HGNC	ENSG00000180376				77	0	0	77	24	23.7624
PTPRG	0	genome.wustl.edu	37	3	62189088	62189088	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	3	62189088	62189088	C	T	SNP	PTPRG	ENST00000474889	human	ensembl	74_37	+1	known	missense	c.1619	p.T540M	0.788	NULL	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Carbonic_anhydrase_a,pfam_Fibronectin_type3,superfamily_Carbonic_anhydrase_a,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Carbonic_anhydrase_a,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRG	HGNC	ENSG00000144724				18	0	0	25	8	24.2424
ATXN7	0	genome.wustl.edu	37	3	63973914	63973914	+	Silent	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	3	63973914	63973914	G	A	SNP	ATXN7	ENST00000398590	human	ensembl	74_37	+1	known	silent	c.1275	p.P425	1.000	NULL	pfam_SCA7_dom	-	no_errors	ATXN7	HGNC	ENSG00000163635				330	1	0.302115	364	98	21.2121
EOGT	0	genome.wustl.edu	37	3	69053564	69053564	+	Silent	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	3	69053564	69053564	C	T	SNP	EOGT	ENST00000383701	human	ensembl	74_37	-1	known	silent	c.585	p.T195	0.895	pfam_Glycosyltransferase_AER61	pfam_Glycosyltransferase_AER61	-	no_errors	EOGT	HGNC	ENSG00000163378				86	0	0	110	19	14.7287
PDZRN3	0	genome.wustl.edu	37	3	73432925	73432925	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	3	73432925	73432925	C	T	SNP	PDZRN3	ENST00000263666	human	ensembl	74_37	-1	known	missense	c.2792	p.R931H	1.000	NULL	pfam_PDZ,pfam_Znf_C3HC4_RING-type,superfamily_PDZ,superfamily_TRAF-like,smart_Znf_RING,smart_PDZ,pfscan_PDZ,pfscan_Znf_RING,pfscan_Znf_TRAF	-	no_errors	PDZRN3	HGNC	ENSG00000121440				77	0	0	75	24	24.2424
ROBO1	0	genome.wustl.edu	37	3	78766491	78766491	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	3	78766491	78766491	T	C	SNP	ROBO1	ENST00000464233	human	ensembl	74_37	-1	known	missense	c.851	p.E284G	1.000	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	ROBO1	HGNC	ENSG00000169855				207	0	0	243	60	19.802
DCBLD2	0	genome.wustl.edu	37	3	98600451	98600451	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	3	98600451	98600451	A	T	SNP	DCBLD2	ENST00000326857	human	ensembl	74_37	-1	known	missense	c.366	p.D122E	1.000	pfam_CUB_dom,superfamily_CUB_dom,smart_CUB_dom,pfscan_CUB_dom	pfam_Coagulation_fac_5/8-C_type_dom,pfam_CUB_dom,pfam_LCCL,superfamily_Galactose-bd-like,superfamily_CUB_dom,superfamily_LCCL,smart_CUB_dom,smart_LCCL,smart_Coagulation_fac_5/8-C_type_dom,pfscan_CUB_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_LCCL	-	no_errors	DCBLD2	HGNC	ENSG00000057019				201	0	0	239	48	16.7247
ZNF518B	0	genome.wustl.edu	37	4	10445916	10445916	+	Silent	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	4	10445916	10445916	C	T	SNP	ZNF518B	ENST00000326756	human	ensembl	74_37	-1	known	silent	c.2037	p.P679	0.234	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF518B	HGNC	ENSG00000178163				195	1	0.510204	227	48	17.4545
PAPSS1	0	genome.wustl.edu	37	4	108565999	108565999	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	4	108565999	108565999	C	T	SNP	PAPSS1	ENST00000265174	human	ensembl	74_37	-1	known	missense	c.1465	p.A489T	1.000	pfam_Sulfurylase_cat_dom,tigrfam_Sulphate_adenylyltransferase	pfam_Sulfurylase_cat_dom,pfam_APS_kinase,superfamily_PUA-like_domain,superfamily_P-loop_NTPase,tigrfam_Sulphate_adenylyltransferase,tigrfam_APS_kinase	-	no_errors	PAPSS1	HGNC	ENSG00000138801				98	0	0	93	18	16.2162
PITX2	0	genome.wustl.edu	37	4	111553569	111553569	+	Silent	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	4	111553569	111553569	C	T	SNP	PITX2	ENST00000354925	human	ensembl	74_37	-1	known	silent	c.114	p.T38	0.044	pirsf_Homeobox_Pitx/unc30	pfam_Homeobox_dom,pfam_OAR_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pirsf_Homeobox_Pitx/unc30,pfscan_OAR_dom,pfscan_Homeobox_dom	-	no_errors	PITX2	HGNC	ENSG00000164093				113	0	0	102	16	13.5593
UGT8	0	genome.wustl.edu	37	4	115544628	115544628	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	4	115544628	115544628	G	A	SNP	UGT8	ENST00000310836	human	ensembl	74_37	+1	known	missense	c.592	p.G198S	0.945	pfam_UDP_glucos_trans	pfam_UDP_glucos_trans,pfam_Glyco_trans_28_C	-	no_errors	UGT8	HGNC	ENSG00000174607				154	0	0	192	20	9.43396
PRSS12	0	genome.wustl.edu	37	4	119203326	119203326	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	4	119203326	119203326	T	C	SNP	PRSS12	ENST00000296498	human	ensembl	74_37	-1	known	missense	c.2393	p.Y798C	0.949	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1	pfam_SRCR,pfam_Peptidase_S1,pfam_Kringle,superfamily_Trypsin-like_Pept_dom,superfamily_Srcr_rcpt-rel,superfamily_Kringle-like,smart_Kringle,smart_Srcr_rcpt-rel,smart_Peptidase_S1,pfscan_Kringle,pfscan_SRCR,pfscan_Peptidase_S1,prints_SRCR,prints_Peptidase_S1A	-	no_errors	PRSS12	HGNC	ENSG00000164099				169	0	0	178	54	23.2759
PRDM5	0	genome.wustl.edu	37	4	121738035	121738035	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	4	121738035	121738035	C	T	SNP	PRDM5	ENST00000264808	human	ensembl	74_37	-1	known	missense	c.695	p.R232Q	0.747	pirsf_Znf_PRDM5	pfam_Znf_C2H2,pfam_Znf_C2H2_jaz,smart_SET_dom,smart_Znf_C2H2-like,pirsf_Znf_PRDM5,pfscan_SET_dom,pfscan_Znf_C2H2	-	no_errors	PRDM5	HGNC	ENSG00000138738				296	0	0	334	74	18.1373
TNIP3	0	genome.wustl.edu	37	4	122075821	122075821	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	4	122075821	122075821	C	T	SNP	TNIP3	ENST00000057513	human	ensembl	74_37	-1	known	missense	c.377	p.R126H	0.000	NULL	NULL	-	no_errors	TNIP3	HGNC	ENSG00000050730				60	0	0	46	8	14.8148
KIAA1109	0	genome.wustl.edu	37	4	123097031	123097031	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	4	123097031	123097031	G	A	SNP	KIAA1109	ENST00000264501	human	ensembl	74_37	+1	known	missense	c.320	p.R107Q	1.000	NULL	pfam_Fragile_site-assoc_C	-	no_errors	KIAA1109	HGNC	ENSG00000138688				88	0	0	104	21	16.8
KIAA1109	0	genome.wustl.edu	37	4	123176343	123176343	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	4	123176343	123176343	C	T	SNP	KIAA1109	ENST00000264501	human	ensembl	74_37	+1	known	missense	c.6283	p.R2095C	1.000	NULL	pfam_Fragile_site-assoc_C	-	no_errors	KIAA1109	HGNC	ENSG00000138688				130	0	0	117	27	18.75
KIAA1109	0	genome.wustl.edu	37	4	123227182	123227182	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	4	123227182	123227182	C	G	SNP	KIAA1109	ENST00000264501	human	ensembl	74_37	+1	known	missense	c.9823	p.P3275A	1.000	NULL	pfam_Fragile_site-assoc_C	-	no_errors	KIAA1109	HGNC	ENSG00000138688				110	0	0	107	26	19.5489
BBS12	0	genome.wustl.edu	37	4	123664621	123664621	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	4	123664621	123664621	G	A	SNP	BBS12	ENST00000314218	human	ensembl	74_37	+1	known	missense	c.1574	p.R525H	0.994	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1,superfamily_GroEL-like_apical_dom	-	no_errors	BBS12	HGNC	ENSG00000181004				213	0	0	215	57	20.9559
FAT4	0	genome.wustl.edu	37	4	126411904	126411904	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	4	126411904	126411904	C	T	SNP	FAT4	ENST00000394329	human	ensembl	74_37	+1	known	missense	c.13927	p.R4643C	1.000	NULL	pfam_Cadherin,pfam_Laminin_G,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,superfamily_Cadherin-like,superfamily_ConA-like_lec_gl_sf,smart_Cadherin,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT4	HGNC	ENSG00000196159				79	0	0	110	7	5.98291
PCDH10	0	genome.wustl.edu	37	4	134071459	134071459	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	4	134071459	134071459	C	T	SNP	PCDH10	ENST00000264360	human	ensembl	74_37	+1	known	missense	c.164	p.T55M	1.000	pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH10	HGNC	ENSG00000138650				153	0	0	180	48	21.0526
BOD1L1	0	genome.wustl.edu	37	4	13601751	13601751	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	4	13601751	13601751	G	A	SNP	BOD1L1	ENST00000040738	human	ensembl	74_37	-1	known	missense	c.6773	p.T2258M	0.118	NULL	NULL	-	no_errors	BOD1L1	HGNC	ENSG00000038219				38	0	0	56	16	22.2222
SLC7A11	0	genome.wustl.edu	37	4	139140513	139140513	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	4	139140513	139140513	G	A	SNP	SLC7A11	ENST00000280612	human	ensembl	74_37	-1	known	missense	c.653	p.T218M	1.000	pfam_AA-permease/SLC12A_dom,pfam_AA_transpt_TM,pirsf_AA/rel_permease1,tigrfam_L_AA_transporter	pfam_AA-permease/SLC12A_dom,pfam_AA_transpt_TM,pirsf_AA/rel_permease1,tigrfam_L_AA_transporter	-	no_errors	SLC7A11	HGNC	ENSG00000151012				95	0	0	129	25	16.2338
CLGN	0	genome.wustl.edu	37	4	141321537	141321537	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	4	141321537	141321537	T	A	SNP	CLGN	ENST00000325617	human	ensembl	74_37	-1	known	missense	c.668	p.D223V	1.000	pfam_Calret/calnex,superfamily_ConA-like_lec_gl_sf	pfam_Calret/calnex,superfamily_ConA-like_lec_gl_sf,superfamily_Calreticulin/calnexin_P_dom,prints_Calret/calnex	-	no_errors	CLGN	HGNC	ENSG00000153132				177	0	0	153	26	14.5251
HHIP	0	genome.wustl.edu	37	4	145636548	145636548	+	Silent	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	4	145636548	145636548	C	T	SNP	HHIP	ENST00000296575	human	ensembl	74_37	+1	known	silent	c.1644	p.S548	0.271	NULL	pfam_Folate_rcpt-like,superfamily_Quinoprot_gluc/sorb_DH,smart_EG-like_dom,pfscan_EG-like_dom	-	no_errors	HHIP	HGNC	ENSG00000164161				146	1	0.680272	163	30	15.544
ANAPC10	0	genome.wustl.edu	37	4	145916496	145916496	+	RNA	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	4	145916496	145916496	C	T	SNP	ANAPC10	ENST00000502651	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ANAPC10	HGNC	ENSG00000164162				84	0	0	77	16	17.2043
ZNF827	0	genome.wustl.edu	37	4	146697029	146697029	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	4	146697029	146697029	C	T	SNP	ZNF827	ENST00000508784	human	ensembl	74_37	-1	known	missense	c.2605	p.V869M	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF827	HGNC	ENSG00000151612				102	0	0	136	38	21.8391
KIAA0922	0	genome.wustl.edu	37	4	154548824	154548824	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	4	154548824	154548824	G	A	SNP	KIAA0922	ENST00000409959	human	ensembl	74_37	+1	known	missense	c.4192	p.V1398I	0.003	NULL	pfam_DUF3651_TMEM131	-	no_errors	KIAA0922	HGNC	ENSG00000121210				61	0	0	79	20	20.202
TLR2	0	genome.wustl.edu	37	4	154625419	154625419	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	4	154625419	154625419	T	C	SNP	TLR2	ENST00000260010	human	ensembl	74_37	+1	known	missense	c.1360	p.C454R	0.998	pirsf_Toll-like_receptor	pirsf_Toll-like_receptor,pfam_TIR_dom,pfam_Leu-rich_rpt,superfamily_TIR_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_TIR_dom,pfscan_TIR_dom	-	no_errors	TLR2	HGNC	ENSG00000137462				159	0	0	171	43	20.0935
GUCY1A3	0	genome.wustl.edu	37	4	156617922	156617922	+	RNA	SNP	A	A	G			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	4	156617922	156617922	A	G	SNP	GUCY1A3	ENST00000515602	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	GUCY1A3	HGNC	ENSG00000164116				24	0	0	19	7	26.9231
PDGFC	0	genome.wustl.edu	37	4	157684304	157684304	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	4	157684304	157684304	C	T	SNP	PDGFC	ENST00000502773	human	ensembl	74_37	-1	known	missense	c.976	p.D326N	1.000	pfam_PDGF/VEGF_dom,smart_PDGF/VEGF_dom,pfscan_PDGF/VEGF_dom	pfam_CUB_dom,pfam_PDGF/VEGF_dom,superfamily_CUB_dom,smart_CUB_dom,smart_PDGF/VEGF_dom,pfscan_CUB_dom,pfscan_PDGF/VEGF_dom	-	no_errors	PDGFC	HGNC	ENSG00000145431				125	0	0	164	37	18.408
GLRB	0	genome.wustl.edu	37	4	158065087	158065087	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	4	158065087	158065087	G	A	SNP	GLRB	ENST00000264428	human	ensembl	74_37	+1	known	missense	c.880	p.A294T	1.000	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_Glycine_rcpt_B,prints_GABAA_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	GLRB	HGNC	ENSG00000109738				149	1	0.666667	140	42	23.0769
GRIA2	0	genome.wustl.edu	37	4	158233934	158233934	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	4	158233934	158233934	G	A	SNP	GRIA2	ENST00000264426	human	ensembl	74_37	+1	known	missense	c.573	p.M191I	0.770	pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I	pfam_Iontro_glu_rcpt,pfam_ANF_lig-bd_rcpt,pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,superfamily_Peripla_BP_I,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIA2	HGNC	ENSG00000120251				156	0	0	156	33	17.4603
GRIA2	0	genome.wustl.edu	37	4	158233975	158233975	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	4	158233975	158233975	G	T	SNP	GRIA2	ENST00000264426	human	ensembl	74_37	+1	known	missense	c.614	p.R205L	1.000	pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I	pfam_Iontro_glu_rcpt,pfam_ANF_lig-bd_rcpt,pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,superfamily_Peripla_BP_I,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIA2	HGNC	ENSG00000120251				203	0	0	209	49	18.9922
FSTL5	0	genome.wustl.edu	37	4	162680595	162680595	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	4	162680595	162680595	T	C	SNP	FSTL5	ENST00000306100	human	ensembl	74_37	-1	known	missense	c.695	p.H232R	1.000	NULL	pfam_Ig_I-set,pfam_Kazal_dom,pfam_Ig_V-set,smart_Kazal_dom,smart_Ig_sub,smart_Ig_sub2,pfscan_EF_hand_dom,pfscan_Ig-like_dom	-	no_errors	FSTL5	HGNC	ENSG00000168843				125	0	0	123	37	23.125
TLL1	0	genome.wustl.edu	37	4	166924664	166924664	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	4	166924664	166924664	C	T	SNP	TLL1	ENST00000061240	human	ensembl	74_37	+1	known	missense	c.754	p.H252Y	1.000	pfam_Peptidase_M12A,smart_Peptidase_Metallo,pirsf_BMP_1/tolloid-like,prints_Peptidase_M12A	pfam_CUB_dom,pfam_Peptidase_M12A,pfam_EGF-like_Ca-bd_dom,superfamily_CUB_dom,smart_Peptidase_Metallo,smart_CUB_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pirsf_BMP_1/tolloid-like,pfscan_CUB_dom,pfscan_EG-like_dom,prints_Peptidase_M12A	-	no_errors	TLL1	HGNC	ENSG00000038295				130	0	0	150	34	18.4783
TLL1	0	genome.wustl.edu	37	4	167020437	167020437	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	4	167020437	167020437	G	A	SNP	TLL1	ENST00000061240	human	ensembl	74_37	+1	known	missense	c.2665	p.G889R	1.000	pfam_CUB_dom,superfamily_CUB_dom,smart_CUB_dom,pirsf_BMP_1/tolloid-like,pfscan_CUB_dom	pfam_CUB_dom,pfam_Peptidase_M12A,pfam_EGF-like_Ca-bd_dom,superfamily_CUB_dom,smart_Peptidase_Metallo,smart_CUB_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pirsf_BMP_1/tolloid-like,pfscan_CUB_dom,pfscan_EG-like_dom,prints_Peptidase_M12A	-	no_errors	TLL1	HGNC	ENSG00000038295				161	0	0	178	44	19.8198
DDX60	0	genome.wustl.edu	37	4	169227765	169227765	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	4	169227765	169227765	G	A	SNP	DDX60	ENST00000393743	human	ensembl	74_37	-1	known	missense	c.371	p.S124L	0.994	NULL	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase/UvrB_dom,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DDX60	HGNC	ENSG00000137628				173	0	0	148	44	22.9167
SH3RF1	0	genome.wustl.edu	37	4	170190147	170190147	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	4	170190147	170190147	G	T	SNP	SH3RF1	ENST00000284637	human	ensembl	74_37	-1	known	missense	c.217	p.L73M	0.985	NULL	pfam_SH3_domain,pfam_SH3_2,pfam_Znf_C3HC4_RING-type,superfamily_SH3_domain,smart_Znf_RING,smart_SH3_domain,pfscan_SH3_domain,pfscan_Znf_RING,prints_p67phox,prints_SH3_domain	-	no_errors	SH3RF1	HGNC	ENSG00000154447				87	0	0	113	37	24.6667
VEGFC	0	genome.wustl.edu	37	4	177713367	177713367	+	Silent	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	4	177713367	177713367	C	T	SNP	VEGFC	ENST00000280193	human	ensembl	74_37	-1	known	silent	c.99	p.E33	1.000	NULL	pfam_PDGF/VEGF_dom,pfam_CXCXC_repeat,smart_PDGF/VEGF_dom,pfscan_PDGF/VEGF_dom	-	no_errors	VEGFC	HGNC	ENSG00000150630				38	0	0	42	8	16
FGFR3	0	genome.wustl.edu	37	4	1801064	1801064	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	4	1801064	1801064	G	A	SNP	FGFR3	ENST00000340107	human	ensembl	74_37	+1	known	missense	c.193	p.G65R	0.001	pirsf_FGF_rcpt_fam,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pirsf_FGF_rcpt_fam,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	FGFR3	HGNC	ENSG00000068078				117	0	0	118	30	20.2703
TENM3	0	genome.wustl.edu	37	4	183267888	183267888	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	4	183267888	183267888	C	T	SNP	TENM3	ENST00000406950	human	ensembl	74_37	+1	known	missense	c.317	p.P106L	1.000	pfam_Ten_N	pfam_Ten_N,pfam_EGF_extracell,superfamily_CarboxyPept-like_regulatory,superfamily_Cyt_c-like_dom,smart_EG-like_dom,pfscan_EG-like_dom,tigrfam_YD,tigrfam_Rhs_assc_core	-	no_errors	TENM3	HGNC	ENSG00000218336				42	0	0	59	12	16.9014
TRAPPC11	0	genome.wustl.edu	37	4	184614172	184614172	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	4	184614172	184614172	G	A	SNP	TRAPPC11	ENST00000334690	human	ensembl	74_37	+1	known	nonsense	c.2109	p.W703*	1.000	NULL	pfam_Foie-gras_1,pfam_DUF1683_C	-	no_errors	TRAPPC11	HGNC	ENSG00000168538				121	0	0	168	22	11.5789
IRF2	0	genome.wustl.edu	37	4	185340636	185340636	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	4	185340636	185340636	C	A	SNP	IRF2	ENST00000393593	human	ensembl	74_37	-1	known	missense	c.174	p.W58C	1.000	pfam_Interferon_reg_fact_DNA-bd_dom,smart_Interferon_reg_fact_DNA-bd_dom,pirsf_Interferon_reg_fac-1/2,prints_Interferon_reg_fact_DNA-bd_dom	pfam_Interferon_reg_fact_DNA-bd_dom,smart_Interferon_reg_fact_DNA-bd_dom,pirsf_Interferon_reg_fac-1/2,prints_Interferon_reg_fact_DNA-bd_dom	-	no_errors	IRF2	HGNC	ENSG00000168310				199	1	0.5	220	45	16.9811
ZFYVE28	0	genome.wustl.edu	37	4	2343127	2343127	+	RNA	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	4	2343127	2343127	C	T	SNP	ZFYVE28	ENST00000504743	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	ZFYVE28	HGNC	ENSG00000159733				11	0	0	17	7	29.1667
SEL1L3	0	genome.wustl.edu	37	4	25760663	25760663	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	4	25760663	25760663	C	T	SNP	SEL1L3	ENST00000399878	human	ensembl	74_37	-1	known	missense	c.2983	p.E995K	0.995	NULL	pfam_Sel1-like,superfamily_ConA-like_lec_gl_sf,smart_Sel1-like	-	no_errors	SEL1L3	HGNC	ENSG00000091490				131	0	0	158	32	16.8421
FAM193A	0	genome.wustl.edu	37	4	2641566	2641566	+	Silent	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	4	2641566	2641566	C	T	SNP	FAM193A	ENST00000324666	human	ensembl	74_37	+1	known	silent	c.270	p.P90	0.185	NULL	NULL	-	no_errors	FAM193A	HGNC	ENSG00000125386				71	0	0	82	19	18.8119
STIM2	0	genome.wustl.edu	37	4	27024297	27024297	+	Silent	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	4	27024297	27024297	G	A	SNP	STIM2	ENST00000382009	human	ensembl	74_37	+1	known	silent	c.2205	p.S735	0.000	NULL	pfam_SAM_2,pfam_SAM_type1,superfamily_SAM/pointed,pfscan_SAM	-	no_errors	STIM2	HGNC	ENSG00000109689				144	0	0	152	41	21.2435
HTT	0	genome.wustl.edu	37	4	3158843	3158843	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	4	3158843	3158843	T	A	SNP	HTT	ENST00000355072	human	ensembl	74_37	+1	known	missense	c.3670	p.S1224T	1.000	NULL	pfam_Huntingtin_middle-repeat,pfam_HEAT,superfamily_ARM-type_fold,prints_Huntingtin	-	no_errors	HTT	HGNC	ENSG00000197386				142	0	0	166	20	10.7527
HTT	0	genome.wustl.edu	37	4	3215861	3215861	+	Silent	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	4	3215861	3215861	C	T	SNP	HTT	ENST00000355072	human	ensembl	74_37	+1	known	silent	c.6951	p.A2317	1.000	NULL	pfam_Huntingtin_middle-repeat,pfam_HEAT,superfamily_ARM-type_fold,prints_Huntingtin	-	no_errors	HTT	HGNC	ENSG00000197386				43	0	0	57	7	10.9375
RELL1	0	genome.wustl.edu	37	4	37636637	37636637	+	Silent	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	4	37636637	37636637	G	A	SNP	RELL1	ENST00000314117	human	ensembl	74_37	-1	known	silent	c.552	p.G184	0.268	NULL	pfam_TNF_rcpt_RELT	-	no_errors	RELL1	HGNC	ENSG00000181826				76	0	0	104	24	18.75
UGDH	0	genome.wustl.edu	37	4	39515753	39515753	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	4	39515753	39515753	A	G	SNP	UGDH	ENST00000316423	human	ensembl	74_37	-1	known	missense	c.214	p.S72P	1.000	pfam_UDP-Glc/GDP-Man_DH_N,tigrfam_UDP-Glc/GDP-Man	pfam_UDP-Glc/GDP-Man_DH_N,pfam_UDP-Glc/GDP-Man_DH_C,pfam_UDP-Glc/GDP-Man_DH_dimer,superfamily_UDP-Glc/GDP-Man_DH_C,superfamily_6-PGluconate_DH_C-like,tigrfam_UDP-Glc/GDP-Man	-	no_errors	UGDH	HGNC	ENSG00000109814				79	0	0	94	20	17.5439
ZBTB49	0	genome.wustl.edu	37	4	4304082	4304082	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	4	4304082	4304082	G	A	SNP	ZBTB49	ENST00000503703	human	ensembl	74_37	+1	known	missense	c.197	p.R66H	0.000	NULL	pfam_BTB_POZ,superfamily_BTB/POZ_fold,pfscan_BTB/POZ-like	-	no_errors	ZBTB49	HGNC	ENSG00000168826				168	0	0	169	32	15.9204
FRYL	0	genome.wustl.edu	37	4	48578234	48578234	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	4	48578234	48578234	G	A	SNP	FRYL	ENST00000358350	human	ensembl	74_37	-1	known	missense	c.2534	p.P845L	1.000	NULL	superfamily_ARM-type_fold	-	no_errors	FRYL	HGNC	ENSG00000075539				72	0	0	82	20	19.6078
FRYL	0	genome.wustl.edu	37	4	48622707	48622707	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	4	48622707	48622707	G	A	SNP	FRYL	ENST00000358350	human	ensembl	74_37	-1	known	missense	c.263	p.T88M	1.000	NULL	superfamily_ARM-type_fold	-	no_errors	FRYL	HGNC	ENSG00000075539				207	0	0	200	42	17.3554
FIP1L1	0	genome.wustl.edu	37	4	54249979	54249979	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	4	54249979	54249979	G	A	SNP	FIP1L1	ENST00000337488	human	ensembl	74_37	+1	known	missense	c.268	p.D90N	1.000	NULL	pfam_Fip1	-	no_errors	FIP1L1	HGNC	ENSG00000145216				70	0	0	81	25	23.5849
FIP1L1	0	genome.wustl.edu	37	4	54325608	54325608	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	4	54325608	54325608	G	A	SNP	FIP1L1	ENST00000337488	human	ensembl	74_37	+1	known	missense	c.1777	p.A593T	1.000	NULL	pfam_Fip1	-	no_errors	FIP1L1	HGNC	ENSG00000145216				205	1	0.485437	184	45	19.6507
LPHN3	0	genome.wustl.edu	37	4	62599176	62599176	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	4	62599176	62599176	G	A	SNP	LPHN3	ENST00000507625	human	ensembl	74_37	+1	known	missense	c.1303	p.V435M	1.000	pfam_Olfac-like,smart_Olfac-like,pfscan_Olfac-like	pfam_GPCR_2_latrophilin_rcpt_C,pfam_Olfac-like,pfam_DUF3497,pfam_GPCR_2_secretin-like,pfam_Lectin_gal-bd_dom,pfam_GPS_dom,pfam_GPCR_2_extracellular_dom,smart_Olfac-like,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_GPS_dom,pfscan_Lectin_gal-bd_dom,pfscan_Olfac-like,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GPCR_2_latrophilin,prints_GPCR_2_secretin-like	-	no_errors	LPHN3	HGNC	ENSG00000150471				54	0	0	59	9	13.2353
PPP2R2C	0	genome.wustl.edu	37	4	6349592	6349592	+	Silent	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	4	6349592	6349592	C	T	SNP	PPP2R2C	ENST00000335585	human	ensembl	74_37	-1	known	silent	c.771	p.L257	1.000	superfamily_WD40_repeat_dom,pirsf_PP2A_PR55,prints_PP2A_PR55	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pirsf_PP2A_PR55,prints_PP2A_PR55	-	no_errors	PPP2R2C	HGNC	ENSG00000074211				26	0	0	33	10	23.2558
MAN2B2	0	genome.wustl.edu	37	4	6588807	6588807	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	4	6588807	6588807	C	T	SNP	MAN2B2	ENST00000285599	human	ensembl	74_37	+1	known	missense	c.476	p.T159M	1.000	pfam_Glyco_hydro_38_N,superfamily_Glyco_hydro/deAcase_b/a-brl	pfam_Glyco_hydro_38_N,pfam_Glyco_hydro_38_C,pfam_Glyco_hydro_38_cen_dom,superfamily_Gal_mutarotase_SF_dom,superfamily_Glyco_hydro/deAcase_b/a-brl,smart_Glyco_hydro_38_cen_dom	-	no_errors	MAN2B2	HGNC	ENSG00000013288				76	0	0	102	22	17.7419
UGT2B28	0	genome.wustl.edu	37	4	70152481	70152481	+	Silent	SNP	A	A	G			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	4	70152481	70152481	A	G	SNP	UGT2B28	ENST00000335568	human	ensembl	74_37	+1	known	silent	c.882	p.E294	0.999	pfam_UDP_glucos_trans	pfam_UDP_glucos_trans,pfam_Glyco_trans_28_C	-	no_errors	UGT2B28	HGNC	ENSG00000135226				155	0	0	181	16	8.12183
NPFFR2	0	genome.wustl.edu	37	4	73012837	73012837	+	Silent	SNP	C	C	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	4	73012837	73012837	C	A	SNP	NPFFR2	ENST00000308744	human	ensembl	74_37	+1	known	silent	c.877	p.R293	0.995	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_NPFF_rcpt_2	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_NPFF_rcpt_2,prints_NPFF_rcpt,prints_GPCR_Rhodpsn,prints_NPY_rcpt	-	no_errors	NPFFR2	HGNC	ENSG00000056291				226	0	0	249	56	18.3607
AFAP1	0	genome.wustl.edu	37	4	7780516	7780516	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	4	7780516	7780516	C	T	SNP	AFAP1	ENST00000420658	human	ensembl	74_37	-1	known	missense	c.1870	p.A624T	0.000	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	AFAP1	HGNC	ENSG00000196526				219	2	0.904977	266	63	19.1489
ABLIM2	0	genome.wustl.edu	37	4	7985012	7985012	+	Silent	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	4	7985012	7985012	G	A	SNP	ABLIM2	ENST00000447017	human	ensembl	74_37	-1	known	silent	c.1803	p.D601	0.967	superfamily_Villin_headpiece,pfscan_Villin_headpiece	pfam_Znf_LIM,pfam_Villin_headpiece,superfamily_Villin_headpiece,smart_Znf_LIM,smart_Villin_headpiece,pfscan_Villin_headpiece,pfscan_Znf_LIM	-	no_errors	ABLIM2	HGNC	ENSG00000163995				21	0	0	17	4	19.0476
PRDM8	0	genome.wustl.edu	37	4	81123474	81123474	+	Silent	SNP	T	T	C			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	4	81123474	81123474	T	C	SNP	PRDM8	ENST00000339711	human	ensembl	74_37	+1	known	silent	c.858	p.G286	0.001	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	PRDM8	HGNC	ENSG00000152784				23	0	0	42	9	17.6471
SH3TC1	0	genome.wustl.edu	37	4	8216302	8216302	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	4	8216302	8216302	C	T	SNP	SH3TC1	ENST00000245105	human	ensembl	74_37	+1	known	missense	c.476	p.A159V	0.975	NULL	superfamily_SH3_domain,smart_SH3_domain,smart_TPR_repeat,pfscan_SH3_domain	-	no_errors	SH3TC1	HGNC	ENSG00000125089				57	0	0	84	7	7.69231
HTRA3	0	genome.wustl.edu	37	4	8307814	8307814	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	4	8307814	8307814	G	A	SNP	HTRA3	ENST00000307358	human	ensembl	74_37	+1	known	missense	c.1313	p.R438Q	1.000	superfamily_PDZ,smart_PDZ	pfam_Peptidase_S1,pfam_Kazal_dom,pfam_PDZ,superfamily_Trypsin-like_Pept_dom,superfamily_PDZ,smart_IGFBP-like,smart_Kazal_dom,smart_PDZ,pfscan_PDZ,prints_Peptidase_S1C	-	no_errors	HTRA3	HGNC	ENSG00000170801				72	0	0	118	21	15.1079
HELQ	0	genome.wustl.edu	37	4	84370022	84370022	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	4	84370022	84370022	C	A	SNP	HELQ	ENST00000295488	human	ensembl	74_37	-1	known	missense	c.1105	p.A369S	1.000	pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,superfamily_DNA_repair_Rad51/TF_NusA_a-hlx,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	HELQ	HGNC	ENSG00000163312				129	0	0	149	29	16.2921
WDFY3	0	genome.wustl.edu	37	4	85638104	85638104	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	4	85638104	85638104	C	A	SNP	WDFY3	ENST00000295888	human	ensembl	74_37	-1	known	missense	c.7820	p.S2607I	1.000	NULL	pfam_BEACH_dom,pfam_Znf_FYVE,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_Znf_FYVE_PHD,superfamily_ConA-like_lec_gl_sf,superfamily_Cyclin-like,superfamily_ARM-type_fold,smart_WD40_repeat,smart_Znf_FYVE,pfscan_BEACH_dom,pfscan_Znf_FYVE-rel,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDFY3	HGNC	ENSG00000163625				159	0	0	176	32	15.3846
WDFY3	0	genome.wustl.edu	37	4	85738729	85738729	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	4	85738729	85738729	C	T	SNP	WDFY3	ENST00000295888	human	ensembl	74_37	-1	known	missense	c.1703	p.R568Q	1.000	superfamily_ARM-type_fold	pfam_BEACH_dom,pfam_Znf_FYVE,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_Znf_FYVE_PHD,superfamily_ConA-like_lec_gl_sf,superfamily_Cyclin-like,superfamily_ARM-type_fold,smart_WD40_repeat,smart_Znf_FYVE,pfscan_BEACH_dom,pfscan_Znf_FYVE-rel,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDFY3	HGNC	ENSG00000163625				178	0	0	158	32	16.8421
PDHA2	0	genome.wustl.edu	37	4	96761910	96761910	+	Silent	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	4	96761910	96761910	C	T	SNP	PDHA2	ENST00000295266	human	ensembl	74_37	+1	known	silent	c.609	p.A203	0.856	pfam_DH_E1,tigrfam_Pyrv_DH_E1_asu_subgrp-y	pfam_DH_E1,tigrfam_Pyrv_DH_E1_asu_subgrp-y	-	no_errors	PDHA2	HGNC	ENSG00000163114				105	0	0	128	22	14.6667
SLC26A1	0	genome.wustl.edu	37	4	983202	983202	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	4	983202	983202	G	A	SNP	SLC26A1	ENST00000361661	human	ensembl	74_37	-1	known	missense	c.1525	p.R509C	0.000	tigrfam_SulP_transpt	pfam_Sulph_transpt,pfam_STAS_dom,superfamily_STAS_dom,pfscan_STAS_dom,tigrfam_SulP_transpt	-	no_errors	SLC26A1	HGNC	ENSG00000145217				10	0	0	8	3	27.2727
ST8SIA4	0	genome.wustl.edu	37	5	100147676	100147676	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	5	100147676	100147676	C	T	SNP	ST8SIA4	ENST00000231461	human	ensembl	74_37	-1	known	missense	c.955	p.D319N	1.000	pfam_Glyco_trans_29,pirsf_Sialyl_trans	pfam_Glyco_trans_29,pirsf_Sialyl_trans	-	no_errors	ST8SIA4	HGNC	ENSG00000113532				42	0	0	60	11	15.493
SLC12A7	0	genome.wustl.edu	37	5	1083980	1083980	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	5	1083980	1083980	C	T	SNP	SLC12A7	ENST00000264930	human	ensembl	74_37	-1	known	missense	c.1009	p.A337T	0.000	tigrfam_Na/K/Cl_cotransptS	pfam_AA-permease/SLC12A_dom,prints_KCL_cotranspt,tigrfam_Na/K/Cl_cotransptS	-	no_errors	SLC12A7	HGNC	ENSG00000113504				69	0	0	76	20	20.8333
GFRA3	0	genome.wustl.edu	37	5	137593578	137593578	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	5	137593578	137593578	G	A	SNP	GFRA3	ENST00000274721	human	ensembl	74_37	-1	known	missense	c.535	p.R179C	1.000	pfam_GDNF/GAS1,smart_GDNF/GAS1	pfam_GDNF/GAS1,smart_GDNF/GAS1,prints_GDNF_rcpt,prints_GDNF_rcpt_A3	-	no_errors	GFRA3	HGNC	ENSG00000146013				45	0	0	55	13	19.1176
KDM3B	0	genome.wustl.edu	37	5	137729043	137729043	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	5	137729043	137729043	G	A	SNP	KDM3B	ENST00000314358	human	ensembl	74_37	+1	known	missense	c.2813	p.R938H	1.000	NULL	pfam_JmjC_dom,smart_JmjC_dom,pfscan_JmjC_dom	-	no_errors	KDM3B	HGNC	ENSG00000120733				38	0	0	39	8	17.0213
CXXC5	0	genome.wustl.edu	37	5	139061006	139061006	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	5	139061006	139061006	A	G	SNP	CXXC5	ENST00000302517	human	ensembl	74_37	+1	known	missense	c.898	p.K300E	1.000	NULL	pfam_Znf_CXXC,pfscan_Znf_CXXC	-	no_errors	CXXC5	HGNC	ENSG00000171604				249	0	0	298	33	9.96979
PSD2	0	genome.wustl.edu	37	5	139189047	139189047	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	5	139189047	139189047	T	C	SNP	PSD2	ENST00000274710	human	ensembl	74_37	+1	known	missense	c.22	p.S8P	0.000	NULL	pfam_Sec7_dom,pfam_Pleckstrin_homology,superfamily_Sec7_dom,smart_Sec7_dom,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Sec7_dom,prints_PH_dom-spectrin-type	-	no_errors	PSD2	HGNC	ENSG00000146005				21	0	0	13	8	38.0952
HARS	0	genome.wustl.edu	37	5	140059380	140059380	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	5	140059380	140059380	T	C	SNP	HARS	ENST00000504156	human	ensembl	74_37	-1	known	missense	c.389	p.D130G	1.000	pfam_aa-tRNA-synt_IIb_cons-dom,pirsf_HisRS/HisZ,pfscan_aa-tRNA-synth_II,tigrfam_His-tRNA-ligase	pfam_aa-tRNA-synt_IIb_cons-dom,pfam_Anticodon-bd,pfam_WHEP-TRS,superfamily_Anticodon-bd,superfamily_S15_NS1_RNA-bd,pirsf_HisRS/HisZ,pfscan_aa-tRNA-synth_II,pfscan_WHEP-TRS,tigrfam_His-tRNA-ligase	-	no_errors	HARS	HGNC	ENSG00000170445				67	0	0	84	12	12.5
PCDHA7	0	genome.wustl.edu	37	5	140216233	140216233	+	Silent	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	5	140216233	140216233	G	A	SNP	PCDHA7	ENST00000525929	human	ensembl	74_37	+1	known	silent	c.2265	p.R755	0.000	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA7	HGNC	ENSG00000204963				71	0	0	75	24	24.2424
PCDHA13	0	genome.wustl.edu	37	5	140262138	140262138	+	Silent	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	5	140262138	140262138	G	A	SNP	PCDHA13	ENST00000289272	human	ensembl	74_37	+1	known	silent	c.285	p.L95	1.000	pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA13	HGNC	ENSG00000239389				439	0	0	501	104	17.1901
PCDHB4	0	genome.wustl.edu	37	5	140503140	140503140	+	Silent	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	5	140503140	140503140	C	T	SNP	PCDHB4	ENST00000194152	human	ensembl	74_37	+1	known	silent	c.1560	p.Y520	0.993	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB4	HGNC	ENSG00000081818				158	0	0	228	43	15.8672
PCDHGA2	0	genome.wustl.edu	37	5	140719316	140719316	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	5	140719316	140719316	C	T	SNP	PCDHGA2	ENST00000394576	human	ensembl	74_37	+1	known	missense	c.778	p.R260W	0.000	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA2	HGNC	ENSG00000081853				159	1	0.625	181	41	18.4685
PCDHGA2	0	genome.wustl.edu	37	5	140720770	140720770	+	Silent	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	5	140720770	140720770	C	T	SNP	PCDHGA2	ENST00000394576	human	ensembl	74_37	+1	known	silent	c.2232	p.D744	0.448	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA2	HGNC	ENSG00000081853				123	0	0	201	41	16.9421
PCDHGA4	0	genome.wustl.edu	37	5	140735546	140735546	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	5	140735546	140735546	G	A	SNP	PCDHGA4	ENST00000571252	human	ensembl	74_37	+1	known	missense	c.779	p.R260Q	0.000	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA4	HGNC	ENSG00000262576				27	0	0	38	10	20.8333
PCDHGA6	0	genome.wustl.edu	37	5	140754301	140754301	+	Silent	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	5	140754301	140754301	C	T	SNP	PCDHGA6	ENST00000517434	human	ensembl	74_37	+1	known	silent	c.651	p.G217	0.019	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA6	HGNC	ENSG00000253731				18	0	0	30	6	16.6667
PCDHGC5	0	genome.wustl.edu	37	5	140869617	140869617	+	Silent	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	5	140869617	140869617	C	T	SNP	PCDHGC5	ENST00000252087	human	ensembl	74_37	+1	known	silent	c.810	p.D270	0.004	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGC5	HGNC	ENSG00000240764				256	0	0	317	77	19.5431
PCDH12	0	genome.wustl.edu	37	5	141335044	141335044	+	Silent	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	5	141335044	141335044	G	A	SNP	PCDH12	ENST00000231484	human	ensembl	74_37	-1	known	silent	c.2373	p.V791	0.000	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH12	HGNC	ENSG00000113555				57	0	0	60	15	20
TRIO	0	genome.wustl.edu	37	5	14363855	14363855	+	Silent	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	5	14363855	14363855	C	T	SNP	TRIO	ENST00000344204	human	ensembl	74_37	+1	known	silent	c.2406	p.L802	0.276	NULL	pfam_DH-domain,pfam_Prot_kinase_dom,pfam_Spectrin_repeat,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ig_I-set,pfam_SH3_domain,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_SH3_domain,superfamily_CRAL-TRIO_dom,superfamily_Capsid/spike_ssDNA_virus,smart_CRAL-TRIO_dom,smart_Spectrin/alpha-actinin,smart_DH-domain,smart_Pleckstrin_homology,smart_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_CRAL-TRIO_dom,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,pfscan_DH-domain	-	no_errors	TRIO	HGNC	ENSG00000038382				110	0	0	127	28	18.0645
PCYOX1L	0	genome.wustl.edu	37	5	148745703	148745703	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	5	148745703	148745703	G	A	SNP	PCYOX1L	ENST00000274569	human	ensembl	74_37	+1	known	missense	c.669	p.M223I	1.000	pfam_Prenylcys_lyase,pirsf_Prenylcysteine_Oxase	pfam_Prenylcys_lyase,pirsf_Prenylcysteine_Oxase	-	no_errors	PCYOX1L	HGNC	ENSG00000145882				30	0	0	39	6	13.3333
PPARGC1B	0	genome.wustl.edu	37	5	149210433	149210433	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	5	149210433	149210433	G	A	SNP	PPARGC1B	ENST00000309241	human	ensembl	74_37	+1	known	missense	c.569	p.R190Q	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	PPARGC1B	HGNC	ENSG00000155846				132	0	0	198	34	14.6552
GRIA1	0	genome.wustl.edu	37	5	153026617	153026617	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	5	153026617	153026617	C	T	SNP	GRIA1	ENST00000448073	human	ensembl	74_37	+1	known	missense	c.380	p.T127I	1.000	pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I	pfam_ANF_lig-bd_rcpt,pfam_Iontro_glu_rcpt,pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,superfamily_Peripla_BP_I,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIA1	HGNC	ENSG00000155511				169	0	0	202	46	18.5484
ITK	0	genome.wustl.edu	37	5	156672939	156672939	+	Silent	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	5	156672939	156672939	G	A	SNP	ITK	ENST00000422843	human	ensembl	74_37	+1	known	silent	c.1563	p.P521	0.001	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_SH2,pfam_Znf_Btk_motif,pfam_SH3_domain,pfam_Pleckstrin_homology,pfam_SH3_2,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_Pleckstrin_homology,smart_Znf_Btk_motif,smart_SH3_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Pleckstrin_homology,pfscan_SH2,pfscan_SH3_domain,pfscan_Znf_Btk_motif,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2	-	no_errors	ITK	HGNC	ENSG00000113263				199	1	0.5	202	52	20.4724
ITK	0	genome.wustl.edu	37	5	156673004	156673004	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	5	156673004	156673004	C	T	SNP	ITK	ENST00000422843	human	ensembl	74_37	+1	known	missense	c.1628	p.S543L	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_SH2,pfam_Znf_Btk_motif,pfam_SH3_domain,pfam_Pleckstrin_homology,pfam_SH3_2,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_Pleckstrin_homology,smart_Znf_Btk_motif,smart_SH3_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Pleckstrin_homology,pfscan_SH2,pfscan_SH3_domain,pfscan_Znf_Btk_motif,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2	-	no_errors	ITK	HGNC	ENSG00000113263				332	2	0.598802	318	58	15.4255
CYFIP2	0	genome.wustl.edu	37	5	156816213	156816213	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	5	156816213	156816213	G	A	SNP	CYFIP2	ENST00000318218	human	ensembl	74_37	+1	known	missense	c.3299	p.R1100H	1.000	pfam_Cytoplasmic_FMR1-int,pirsf_Cytoplasmic_FMR1-int_sub	pfam_Cytoplasmic_FMR1-int,pirsf_Cytoplasmic_FMR1-int_sub,prints_Cytoplasmic_FMR1-int	-	no_errors	CYFIP2	HGNC	ENSG00000055163				54	0	0	64	12	15.7895
EBF1	0	genome.wustl.edu	37	5	158267047	158267047	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	5	158267047	158267047	C	T	SNP	EBF1	ENST00000313708	human	ensembl	74_37	-1	known	missense	c.626	p.R209Q	1.000	NULL	pfam_IPT,superfamily_Ig_E-set,superfamily_bHLH_dom,smart_IPT	-	no_errors	EBF1	HGNC	ENSG00000164330				125	0	0	152	27	15.0838
GABRB2	0	genome.wustl.edu	37	5	160838047	160838047	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	5	160838047	160838047	C	T	SNP	GABRB2	ENST00000274547	human	ensembl	74_37	-1	known	missense	c.475	p.A159T	1.000	pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,tigrfam_Neur_channel	pfam_Neurotrans-gated_channel_TM,pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABAA_rcpt,prints_GABAAb_rcpt,prints_Neur_channel,prints_GABBAg_rcpt,prints_GABAAa_rcpt,tigrfam_Neur_channel	-	no_errors	GABRB2	HGNC	ENSG00000145864				124	0	0	134	34	20.2381
LCP2	0	genome.wustl.edu	37	5	169714973	169714973	+	Splice_Site	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	5	169714973	169714973	C	T	SNP	LCP2	ENST00000046794	human	ensembl	74_37	-1	known	splice_site	c.188+1	e3+1	1.000	-	-	-	no_errors	LCP2	HGNC	ENSG00000043462				59	0	0	57	14	19.7183
STC2	0	genome.wustl.edu	37	5	172744894	172744894	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	5	172744894	172744894	C	T	SNP	STC2	ENST00000265087	human	ensembl	74_37	-1	known	missense	c.865	p.E289K	0.999	NULL	pfam_Stanniocalcin	-	no_errors	STC2	HGNC	ENSG00000113739				175	1	0.568182	213	60	21.978
CDHR2	0	genome.wustl.edu	37	5	176011557	176011557	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	5	176011557	176011557	C	T	SNP	CDHR2	ENST00000261944	human	ensembl	74_37	+1	known	missense	c.2275	p.R759W	0.163	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDHR2	HGNC	ENSG00000074276				164	1	0.606061	205	43	17.3387
HK3	0	genome.wustl.edu	37	5	176309124	176309124	+	Silent	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	5	176309124	176309124	G	A	SNP	HK3	ENST00000292432	human	ensembl	74_37	-1	known	silent	c.2058	p.T686	0.147	pfam_Hexokinase_C,prints_Hexokinase	pfam_Hexokinase_C,pfam_Hexokinase_N,prints_Hexokinase	-	no_errors	HK3	HGNC	ENSG00000160883				81	0	0	108	25	18.797
SLC34A1	0	genome.wustl.edu	37	5	176823997	176823997	+	Silent	SNP	T	T	C			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	5	176823997	176823997	T	C	SNP	SLC34A1	ENST00000324417	human	ensembl	74_37	+1	known	silent	c.1338	p.G446	0.998	pfam_Na/Pi_transpt,tigrfam_Na/Pi_transpt	pfam_Na/Pi_transpt,tigrfam_Na/Pi_transpt	-	no_errors	SLC34A1	HGNC	ENSG00000131183				86	0	0	81	23	22.1154
NHP2	0	genome.wustl.edu	37	5	177580535	177580535	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	5	177580535	177580535	C	T	SNP	NHP2	ENST00000274606	human	ensembl	74_37	-1	known	missense	c.187	p.G63R	1.000	pfam_Ribosomal_L7Ae/L30e/S12e/Gad45,prints_Ribosomal_L7Ae/L8/Nhp2,prints_H/ACA_rnp_Nhp2_euk	pfam_Ribosomal_L7Ae/L30e/S12e/Gad45,prints_Ribosomal_L7Ae/L8/Nhp2,prints_H/ACA_rnp_Nhp2_euk	-	no_errors	NHP2	HGNC	ENSG00000145912				315	0	0	359	88	19.6868
ZNF354B	0	genome.wustl.edu	37	5	178311021	178311021	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	5	178311021	178311021	G	A	SNP	ZNF354B	ENST00000322434	human	ensembl	74_37	+1	known	missense	c.1568	p.R523Q	0.001	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF354B	HGNC	ENSG00000178338				149	0	0	129	27	17.3077
MGAT1	0	genome.wustl.edu	37	5	180218922	180218922	+	Silent	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	5	180218922	180218922	C	T	SNP	MGAT1	ENST00000307826	human	ensembl	74_37	-1	known	silent	c.1050	p.Q350	0.006	pfam_Glyco_trans_13	pfam_Glyco_trans_13	-	no_errors	MGAT1	HGNC	ENSG00000131446				86	0	0	134	36	21.1765
IRX4	0	genome.wustl.edu	37	5	1879904	1879904	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	5	1879904	1879904	C	T	SNP	IRX4	ENST00000508261	human	ensembl	74_37	-1	known	missense	c.488	p.R163H	0.973	NULL	NULL	-	no_errors	IRX4	HGNC	ENSG00000113430				76	0	0	100	23	18.6992
C5orf22	0	genome.wustl.edu	37	5	31534451	31534451	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	5	31534451	31534451	G	A	SNP	C5orf22	ENST00000325366	human	ensembl	74_37	+1	known	missense	c.154	p.D52N	1.000	NULL	superfamily_ICAT	-	no_errors	C5orf22	HGNC	ENSG00000082213				199	0	0	179	45	20.0893
CAPSL	0	genome.wustl.edu	37	5	35921207	35921207	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	5	35921207	35921207	G	A	SNP	CAPSL	ENST00000397366	human	ensembl	74_37	-1	known	missense	c.16	p.R6C	0.896	NULL	pfam_EF_hand_dom,smart_EF_hand_dom,prints_Recoverin,pfscan_EF_hand_dom	-	no_errors	CAPSL	HGNC	ENSG00000152611				51	0	0	68	15	18.0723
ITGA1	0	genome.wustl.edu	37	5	52227934	52227934	+	Silent	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	5	52227934	52227934	G	A	SNP	ITGA1	ENST00000282588	human	ensembl	74_37	+1	known	silent	c.2829	p.P943	0.829	pfam_Integrin_alpha-2	pfam_Integrin_alpha-2,pfam_VWF_A,pfam_FG-GAP,smart_Int_alpha_beta-p,smart_VWF_A,pfscan_VWF_A,prints_Integrin_alpha	-	no_errors	ITGA1	HGNC	ENSG00000213949				63	0	0	66	10	13.1579
PAPD7	0	genome.wustl.edu	37	5	6754978	6754978	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	5	6754978	6754978	C	T	SNP	PAPD7	ENST00000230859	human	ensembl	74_37	+1	known	missense	c.1549	p.H517Y	1.000	NULL	pfam_PAP_assoc,pfam_Nucleotidyltransferase	-	no_errors	PAPD7	HGNC	ENSG00000112941				62	0	0	81	12	12.9032
HMGCR	0	genome.wustl.edu	37	5	74647031	74647031	+	Silent	SNP	A	A	G			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	5	74647031	74647031	A	G	SNP	HMGCR	ENST00000287936	human	ensembl	74_37	+1	known	silent	c.1080	p.T360	0.109	tigrfam_HMG_CoA_Rdtase_metazoan	pfam_HMG_CoA_Rdtase,pfam_Patched,superfamily_HMG_CoA_Rdtase_sub-bd,superfamily_HMG_CoA_Rdtase_NAD(P)-bd,pfscan_SSD,pfscan_HMG_CoA_Rdtase,prints_HMG_CoA_Rdtase,tigrfam_HMG_CoA_Rdtase_metazoan,tigrfam_HMG_CoA_Rdtase_eu_arc	-	no_errors	HMGCR	HGNC	ENSG00000113161				119	0	0	133	23	14.7436
CMYA5	0	genome.wustl.edu	37	5	79033262	79033262	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	5	79033262	79033262	T	C	SNP	CMYA5	ENST00000446378	human	ensembl	74_37	+1	known	missense	c.8674	p.Y2892H	0.003	NULL	pfam_Fibronectin_type3,pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_B30.2/SPRY,pfscan_Fibronectin_type3	-	no_errors	CMYA5	HGNC	ENSG00000164309				98	0	0	81	27	25
ZDHHC11	0	genome.wustl.edu	37	5	819657	819657	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	5	819657	819657	C	T	SNP	ZDHHC11	ENST00000283441	human	ensembl	74_37	-1	known	missense	c.1129	p.G377R	0.000	NULL	pfam_Znf_DHHC_palmitoyltrfase,pfscan_Znf_DHHC_palmitoyltrfase	-	no_errors	ZDHHC11	HGNC	ENSG00000188818				127	0	0	161	34	17.4359
VCAN	0	genome.wustl.edu	37	5	82818051	82818051	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	5	82818051	82818051	C	T	SNP	VCAN	ENST00000265077	human	ensembl	74_37	+1	known	missense	c.3926	p.T1309M	0.982	NULL	pfam_Link,pfam_C-type_lectin,pfam_Ig_V-set,pfam_EG-like_dom,pfam_Sushi_SCR_CCP,superfamily_C-type_lectin_fold,superfamily_Sushi_SCR_CCP,smart_Ig_sub,smart_Link,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_C-type_lectin,smart_Sushi_SCR_CCP,pfscan_EG-like_dom,pfscan_C-type_lectin,pfscan_Link,pfscan_Sushi_SCR_CCP,pfscan_Ig-like_dom,prints_Link	-	no_errors	VCAN	HGNC	ENSG00000038427				144	0	0	174	36	17.1429
ENSG00000250320	0	genome.wustl.edu	37	5	83680326	83680326	+	RNA	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	5	83680326	83680326	C	T	SNP	ENSG00000250320	ENST00000509406	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.984	-	-	-	no_errors	CTD-2269F5.1	Clone_based_vega_gene	ENSG00000250320				15	0	0	21	8	27.5862
NR2F1	0	genome.wustl.edu	37	5	92923980	92923980	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	5	92923980	92923980	C	T	SNP	NR2F1	ENST00000327111	human	ensembl	74_37	+1	known	missense	c.821	p.A274V	1.000	pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Nucl_hrmn_rcpt_lig-bd_core,prints_COUP_TF	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_COUP_TF,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,prints_Retinoid-X_rcpt/HNF4	-	no_errors	NR2F1	HGNC	ENSG00000175745				86	0	0	86	26	23.2143
FAM172A	0	genome.wustl.edu	37	5	93217343	93217343	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	5	93217343	93217343	C	A	SNP	FAM172A	ENST00000395965	human	ensembl	74_37	-1	known	nonsense	c.619	p.E207*	1.000	pfam_Arb2_domain	pfam_Arb2_domain	-	no_errors	FAM172A	HGNC	ENSG00000113391				93	0	0	97	12	11.0092
RGMB	0	genome.wustl.edu	37	5	98115503	98115503	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	5	98115503	98115503	G	T	SNP	RGMB	ENST00000308234	human	ensembl	74_37	+1	known	missense	c.479	p.R160M	1.000	pfam_RGM_N	pfam_RGM_C,pfam_RGM_N	-	no_errors	RGMB	HGNC	ENSG00000174136				57	0	0	68	17	20
PRDM13	0	genome.wustl.edu	37	6	100061351	100061351	+	Silent	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	6	100061351	100061351	G	A	SNP	PRDM13	ENST00000369215	human	ensembl	74_37	+1	known	silent	c.840	p.A280	0.000	NULL	smart_Znf_C2H2-like,pfscan_SET_dom,pfscan_Znf_C2H2	-	no_errors	PRDM13	HGNC	ENSG00000112238				9	0	0	5	2	28.5714
MCHR2	0	genome.wustl.edu	37	6	100390836	100390836	+	Silent	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	6	100390836	100390836	G	A	SNP	MCHR2	ENST00000281806	human	ensembl	74_37	-1	known	silent	c.576	p.D192	0.162	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_MCH2_receptor,prints_GPCR_Rhodpsn,prints_MCH_rcpt	-	no_errors	MCHR2	HGNC	ENSG00000152034				162	0	0	173	37	17.619
BEND3	0	genome.wustl.edu	37	6	107390065	107390065	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	6	107390065	107390065	A	G	SNP	BEND3	ENST00000369042	human	ensembl	74_37	-1	known	missense	c.2330	p.L777P	1.000	pfam_BEN_domain	pfam_BEN_domain	-	no_errors	BEND3	HGNC	ENSG00000178409				91	0	0	110	36	24.6575
FOXO3	0	genome.wustl.edu	37	6	108882671	108882671	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	6	108882671	108882671	C	T	SNP	FOXO3	ENST00000343882	human	ensembl	74_37	+1	known	missense	c.260	p.T87M	0.003	NULL	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXO3	HGNC	ENSG00000118689				9	0	0	1	2	66.6667
NEDD9	0	genome.wustl.edu	37	6	11190803	11190803	+	Silent	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	6	11190803	11190803	G	A	SNP	NEDD9	ENST00000379446	human	ensembl	74_37	-1	known	silent	c.1299	p.T433	0.001	pfam_Serine_rich	pfam_CAS_DUF3513,pfam_Serine_rich,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	NEDD9	HGNC	ENSG00000111859				82	0	0	107	24	18.3206
GPRC6A	0	genome.wustl.edu	37	6	117113654	117113654	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	6	117113654	117113654	G	A	SNP	GPRC6A	ENST00000310357	human	ensembl	74_37	-1	known	missense	c.2432	p.P811L	0.998	pfam_GPCR_3_C,pfscan_GPCR_3_C	pfam_GPCR_3_C,pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_9-Cys_dom,superfamily_Peripla_BP_I,pfscan_GPCR_3_C,prints_GPCR_3,prints_GPCR_3_vmron_rcpt_2	-	no_errors	GPRC6A	HGNC	ENSG00000173612				93	0	0	126	16	11.2676
ENSG00000227678	0	genome.wustl.edu	37	6	130454848	130454848	+	RNA	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	6	130454848	130454848	G	A	SNP	ENSG00000227678	ENST00000415964	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RP11-73O6.3	Clone_based_vega_gene	ENSG00000227678				24	0	0	20	16	44.4444
MOXD1	0	genome.wustl.edu	37	6	132618385	132618385	+	Silent	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	6	132618385	132618385	C	T	SNP	MOXD1	ENST00000367963	human	ensembl	74_37	-1	known	silent	c.1749	p.T583	0.000	NULL	pfam_Cu2_ascorb_mOase_N,pfam_DOMON_domain,superfamily_PHM/PNGase_F_dom,smart_DOMON_domain,pfscan_DOMON_domain,prints_Dopamine_b_mOase	-	no_errors	MOXD1	HGNC	ENSG00000079931				155	1	0.641026	201	41	16.9421
GFOD1	0	genome.wustl.edu	37	6	13365237	13365237	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	6	13365237	13365237	C	T	SNP	GFOD1	ENST00000379287	human	ensembl	74_37	-1	known	missense	c.911	p.R304H	0.919	NULL	pfam_Oxidoreductase_N,pfam_OxRdtase_C	-	no_errors	GFOD1	HGNC	ENSG00000145990				107	0	0	128	30	18.9873
HECA	0	genome.wustl.edu	37	6	139488244	139488244	+	Silent	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	6	139488244	139488244	C	T	SNP	HECA	ENST00000367658	human	ensembl	74_37	+1	known	silent	c.1095	p.H365	0.992	superfamily_Glycoside_hydrolase_SF	superfamily_Glycoside_hydrolase_SF	-	no_errors	HECA	HGNC	ENSG00000112406				88	0	0	99	20	16.8067
UTRN	0	genome.wustl.edu	37	6	144898290	144898290	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	6	144898290	144898290	C	T	SNP	UTRN	ENST00000367545	human	ensembl	74_37	+1	known	missense	c.7345	p.R2449C	0.551	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin,pirsf_Dystrophin/utrophin	pfam_Spectrin_repeat,pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_CH-domain,pfam_Znf_ZZ,pfam_WW_dom,superfamily_CH-domain,superfamily_WW_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_WW_dom,smart_Znf_ZZ,pirsf_Dystrophin/utrophin,pfscan_CH-domain,pfscan_WW_dom,pfscan_Znf_ZZ	-	no_errors	UTRN	HGNC	ENSG00000152818				84	0	0	93	19	16.9643
PLEKHG1	0	genome.wustl.edu	37	6	151152273	151152273	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	6	151152273	151152273	C	T	SNP	PLEKHG1	ENST00000358517	human	ensembl	74_37	+1	known	missense	c.2026	p.R676W	0.999	NULL	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PLEKHG1	HGNC	ENSG00000120278				84	0	0	86	26	23.2143
CLDN20	0	genome.wustl.edu	37	6	155597113	155597113	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	6	155597113	155597113	C	T	SNP	CLDN20	ENST00000367165	human	ensembl	74_37	+1	known	missense	c.260	p.A87V	0.997	pfam_PMP22/EMP/MP20/Claudin,prints_Claudin	pfam_PMP22/EMP/MP20/Claudin,prints_Claudin	-	no_errors	CLDN20	HGNC	ENSG00000171217				127	0	0	164	9	5.20231
MRPL18	0	genome.wustl.edu	37	6	160219129	160219129	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	6	160219129	160219129	C	T	SNP	MRPL18	ENST00000367034	human	ensembl	74_37	+1	known	missense	c.517	p.R173W	0.040	NULL	pfam_Ribosomal_L18/L5	-	no_errors	MRPL18	HGNC	ENSG00000112110				91	0	0	100	14	12.2807
IGF2R	0	genome.wustl.edu	37	6	160501175	160501175	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	6	160501175	160501175	G	A	SNP	IGF2R	ENST00000356956	human	ensembl	74_37	+1	known	missense	c.5701	p.V1901I	0.015	superfamily_Man6P_isomerase_rcpt-bd_dom,superfamily_Kringle-like,smart_FN_type2_col-bd,pfscan_FN_type2_col-bd	pfam_CIMR,pfam_FN_type2_col-bd,superfamily_Man6P_isomerase_rcpt-bd_dom,superfamily_Kringle-like,smart_FN_type2_col-bd,pfscan_FN_type2_col-bd	-	no_errors	IGF2R	HGNC	ENSG00000197081				242	0	0	246	54	18
PARK2	0	genome.wustl.edu	37	6	161771140	161771140	+	Silent	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	6	161771140	161771140	G	A	SNP	PARK2	ENST00000366898	human	ensembl	74_37	-1	known	silent	c.1389	p.F463	1.000	pirsf_Parkin,prints_Parkin	pfam_Ubiquitin_dom,pfam_Znf_C6HC,pfam_Rad60/SUMO_like,smart_Ubiquitin_dom,smart_Znf_C6HC,pirsf_Parkin,pfscan_Ubiquitin_supergroup,prints_Parkin,prints_Ubiquitin	-	no_errors	PARK2	HGNC	ENSG00000185345				28	0	0	39	8	17.0213
ATXN1	0	genome.wustl.edu	37	6	16306662	16306662	+	Silent	SNP	C	C	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	6	16306662	16306662	C	A	SNP	ATXN1	ENST00000244769	human	ensembl	74_37	-1	known	silent	c.2346	p.L782	1.000	NULL	pfam_Ataxin-1_HBP1,pfam_Capicua_tscrpt_rep_mod,superfamily_Ataxin-1_HBP1,smart_Ataxin_AXH_dom,pfscan_Ataxin-1_HBP1	-	no_errors	ATXN1	HGNC	ENSG00000124788				123	0	0	163	26	13.7566
C6orf118	0	genome.wustl.edu	37	6	165706906	165706906	+	Silent	SNP	T	T	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	6	165706906	165706906	T	A	SNP	C6orf118	ENST00000230301	human	ensembl	74_37	-1	known	silent	c.1116	p.R372	0.000	NULL	superfamily_Ribonuclease/ribotoxin	-	no_errors	C6orf118	HGNC	ENSG00000112539				226	0	0	263	70	21.021
C6orf118	0	genome.wustl.edu	37	6	165715084	165715084	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	6	165715084	165715084	C	T	SNP	C6orf118	ENST00000230301	human	ensembl	74_37	-1	known	missense	c.727	p.A243T	0.000	NULL	superfamily_Ribonuclease/ribotoxin	-	no_errors	C6orf118	HGNC	ENSG00000112539				101	0	0	118	28	19.1781
UNC93A	0	genome.wustl.edu	37	6	167709603	167709603	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	6	167709603	167709603	C	T	SNP	UNC93A	ENST00000230256	human	ensembl	74_37	+1	known	missense	c.353	p.T118M	0.006	pfam_Ion_channel_UNC-93,superfamily_MFS_dom_general_subst_transpt	pfam_Ion_channel_UNC-93,superfamily_MFS_dom_general_subst_transpt	-	no_errors	UNC93A	HGNC	ENSG00000112494				124	1	0.8	154	34	18.0851
TCP10	0	genome.wustl.edu	37	6	167789540	167789540	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	6	167789540	167789540	G	A	SNP	TCP10	ENST00000397829	human	ensembl	74_37	-1	known	missense	c.602	p.P201L	0.002	NULL	NULL	-	no_errors	TCP10	HGNC	ENSG00000203690				62	0	0	54	7	11.4754
KIF25	0	genome.wustl.edu	37	6	168443281	168443281	+	Silent	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	6	168443281	168443281	G	A	SNP	KIF25	ENST00000354419	human	ensembl	74_37	+1	known	silent	c.870	p.A290	0.002	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF25	HGNC	ENSG00000125337				145	1	0.684932	168	35	17.2414
KIF25	0	genome.wustl.edu	37	6	168443315	168443315	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	6	168443315	168443315	G	A	SNP	KIF25	ENST00000354419	human	ensembl	74_37	+1	known	missense	c.904	p.V302I	0.979	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF25	HGNC	ENSG00000125337				128	0	0	157	27	14.6739
DLL1	0	genome.wustl.edu	37	6	170592774	170592774	+	Silent	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	6	170592774	170592774	G	A	SNP	DLL1	ENST00000366756	human	ensembl	74_37	-1	known	silent	c.1593	p.D531	0.631	NULL	pfam_EG-like_dom,pfam_Notch_ligand_N,pfam_DSL,pfam_EGF_extracell,pfam_EGF-like_Ca-bd_dom,smart_DSL,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_DSL,pfscan_EG-like_dom	-	no_errors	DLL1	HGNC	ENSG00000198719				13	0	0	25	3	10.7143
CAP2	0	genome.wustl.edu	37	6	17507411	17507411	+	Silent	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	6	17507411	17507411	C	T	SNP	CAP2	ENST00000229922	human	ensembl	74_37	+1	known	silent	c.312	p.A104	0.058	pfam_Adenylate_cyclase-assoc_CAP_N,superfamily_Adenylate_cyclase-assoc_CAP_N	pfam_Adenylate_cyclase-assoc_CAP_N,pfam_Adenylate_cyclase-assoc_CAP_C,superfamily_Adenylate_cyclase-assoc_CAP_N,superfamily_Adenylate_cyclase-assoc_CAP_C,smart_CARP_motif	-	no_errors	CAP2	HGNC	ENSG00000112186				101	0	0	120	28	18.9189
BTN3A3	0	genome.wustl.edu	37	6	26448537	26448537	+	Silent	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	6	26448537	26448537	G	A	SNP	BTN3A3	ENST00000244519	human	ensembl	74_37	+1	known	silent	c.777	p.S259	0.000	NULL	pfam_SPRY_rcpt,pfam_Ig_V-set,superfamily_ConA-like_lec_gl_sf,smart_Ig_sub,smart_Ig_V-set_subgr,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Ig-like_dom,prints_Butyrophylin	-	no_errors	BTN3A3	HGNC	ENSG00000111801				114	0	0	121	28	18.7919
HIST1H2AG	0	genome.wustl.edu	37	6	27101205	27101205	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	6	27101205	27101205	A	C	SNP	HIST1H2AG	ENST00000359193	human	ensembl	74_37	+1	known	missense	c.355	p.K119Q	1.000	superfamily_Histone-fold,smart_Histone_H2A	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2A,prints_Histone_H2A	-	no_errors	HIST1H2AG	HGNC	ENSG00000196787				127	1	0.78125	138	22	13.75
ZNF165	0	genome.wustl.edu	37	6	28056479	28056479	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	6	28056479	28056479	C	T	SNP	ZNF165	ENST00000377325	human	ensembl	74_37	+1	known	missense	c.689	p.A230V	0.013	NULL	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF165	HGNC	ENSG00000197279				221	0	0	213	42	16.4706
HLA-F	0	genome.wustl.edu	37	6	29694737	29694737	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	6	29694737	29694737	T	C	SNP	HLA-F	ENST00000259951	human	ensembl	74_37	+1	known	missense	c.1114	p.Y372H	1.000	NULL	pfam_MHC_I_a_a1/a2,pfam_Ig_C1-set,superfamily_MHC_I/II-like_Ag-recog,smart_Ig_C1-set,pfscan_Ig-like_dom,prints_MHC_I_a	-	no_errors	HLA-F	HGNC	ENSG00000204642				270	0	0	256	90	26.0116
HLA-J	0	genome.wustl.edu	37	6	29975983	29975983	+	RNA	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	6	29975983	29975983	C	T	SNP	HLA-J	ENST00000462773	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	HLA-J	HGNC	ENSG00000204622				58	0	0	63	14	18.1818
TRIM39	0	genome.wustl.edu	37	6	30303703	30303703	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	6	30303703	30303703	C	T	SNP	TRIM39	ENST00000376656	human	ensembl	74_37	+1	known	missense	c.731	p.A244V	1.000	NULL	pfam_SPRY_rcpt,pfam_Znf_C3HC4_RING-type,pfam_Znf_B-box,superfamily_ConA-like_lec_gl_sf,smart_Znf_RING,smart_Znf_B-box,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	TRIM39	HGNC	ENSG00000204599				73	0	0	101	24	19.2
ABCF1	0	genome.wustl.edu	37	6	30554267	30554267	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	6	30554267	30554267	C	A	SNP	ABCF1	ENST00000326195	human	ensembl	74_37	+1	known	nonsense	c.1902	p.Y634*	0.987	superfamily_P-loop_NTPase,pfscan_ABC_transporter-like	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCF1	HGNC	ENSG00000204574				268	0	0	312	56	15.2174
PPP1R10	0	genome.wustl.edu	37	6	30569867	30569867	+	Silent	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	6	30569867	30569867	G	A	SNP	PPP1R10	ENST00000376511	human	ensembl	74_37	-1	known	silent	c.2559	p.H853	0.930	NULL	pfam_TFIIS_N,pfam_Znf_CCCH,superfamily_TFIIS_N,smart_TFIIS/CRSP70_N_sub,smart_Znf_CCCH	-	no_errors	PPP1R10	HGNC	ENSG00000204569				142	0	0	162	36	18.1818
PPP1R10	0	genome.wustl.edu	37	6	30574379	30574379	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	6	30574379	30574379	C	T	SNP	PPP1R10	ENST00000376511	human	ensembl	74_37	-1	known	missense	c.500	p.R167Q	0.846	NULL	pfam_TFIIS_N,pfam_Znf_CCCH,superfamily_TFIIS_N,smart_TFIIS/CRSP70_N_sub,smart_Znf_CCCH	-	no_errors	PPP1R10	HGNC	ENSG00000204569				130	0	0	163	40	19.7044
AIF1	0	genome.wustl.edu	37	6	31584597	31584597	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	6	31584597	31584597	C	A	SNP	AIF1	ENST00000376059	human	ensembl	74_37	+1	known	missense	c.364	p.L122M	1.000	NULL	pfscan_EF_hand_dom	-	no_errors	AIF1	HGNC	ENSG00000204472				54	0	0	57	16	21.9178
DDAH2	0	genome.wustl.edu	37	6	31696699	31696699	+	Silent	SNP	C	C	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	6	31696699	31696699	C	A	SNP	DDAH2	ENST00000375787	human	ensembl	74_37	-1	known	silent	c.240	p.V80	1.000	pfam_Amidino_trans	pfam_Amidino_trans	-	no_errors	DDAH2	HGNC	ENSG00000213722				100	0	0	125	26	17.2185
SKIV2L	0	genome.wustl.edu	37	6	31931880	31931880	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	6	31931880	31931880	G	A	SNP	SKIV2L	ENST00000375394	human	ensembl	74_37	+1	known	missense	c.1838	p.G613D	1.000	superfamily_P-loop_NTPase,pirsf_RNA_helicase_ATP-dep_SK12/DOB1,pfscan_Helicase_C	pfam_DSH_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pirsf_RNA_helicase_ATP-dep_SK12/DOB1,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	SKIV2L	HGNC	ENSG00000204351				53	0	0	73	17	18.8889
CYP21A2	0	genome.wustl.edu	37	6	32008351	32008351	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	6	32008351	32008351	C	T	SNP	CYP21A2	ENST00000418967	human	ensembl	74_37	+1	known	missense	c.1108	p.R370W	0.101	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_B	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_B	-	no_errors	CYP21A2	HGNC	ENSG00000231852				22	0	0	36	15	29.4118
PRRT1	0	genome.wustl.edu	37	6	32117088	32117088	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	6	32117088	32117088	C	T	SNP	PRRT1	ENST00000211413	human	ensembl	74_37	-1	known	missense	c.832	p.V278M	0.999	pfam_CD225/Dispanin_fam	pfam_CD225/Dispanin_fam	-	no_errors	PRRT1	HGNC	ENSG00000204314				28	0	0	26	7	21.2121
SLC22A23	0	genome.wustl.edu	37	6	3273381	3273381	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	6	3273381	3273381	C	T	SNP	SLC22A23	ENST00000406686	human	ensembl	74_37	-1	known	missense	c.1969	p.E657K	0.997	NULL	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC22A23	HGNC	ENSG00000137266				151	0	0	163	24	12.8342
ITPR3	0	genome.wustl.edu	37	6	33658886	33658886	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	6	33658886	33658886	G	T	SNP	ITPR3	ENST00000374316	human	ensembl	74_37	+1	known	missense	c.7225	p.A2409S	1.000	pfam_Ion_trans_dom	pfam_Ca-rel_channel,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ARM-type_fold,smart_MIR_motif,prints_InsP3_rcpt-bd,pfscan_MIR_motif	-	no_errors	ITPR3	HGNC	ENSG00000096433				85	0	0	102	27	20.9302
PPARD	0	genome.wustl.edu	37	6	35392119	35392119	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	6	35392119	35392119	A	T	SNP	PPARD	ENST00000311565	human	ensembl	74_37	+1	known	missense	c.641	p.H214L	1.000	superfamily_Nucl_hormone_rcpt_ligand-bd	pfam_Znf_hrmn_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_1Cnucl_rcpt,prints_Str_hrmn_rcpt,prints_1Cnucl_rcpt_B,prints_Znf_hrmn_rcpt,prints_1Cnucl_rcpt_A	-	no_errors	PPARD	HGNC	ENSG00000112033				53	0	0	79	11	12.2222
BRPF3	0	genome.wustl.edu	37	6	36193095	36193095	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	6	36193095	36193095	A	T	SNP	BRPF3	ENST00000357641	human	ensembl	74_37	+1	known	missense	c.3233	p.E1078V	1.000	pfam_PWWP_dom,smart_PWWP_dom,pfscan_PWWP_dom	pfam_Enhancer_polycomb-like_N,pfam_Bromodomain,pfam_PWWP_dom,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_Bromodomain,smart_PWWP_dom,pfscan_PWWP_dom,pfscan_Znf_PHD-finger,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BRPF3	HGNC	ENSG00000096070				81	0	0	109	22	16.7939
MDGA1	0	genome.wustl.edu	37	6	37619886	37619886	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	6	37619886	37619886	G	T	SNP	MDGA1	ENST00000297153	human	ensembl	74_37	-1	known	missense	c.1213	p.L405M	0.997	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_MAM_dom,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_MAM_dom,pfscan_Fibronectin_type3,pfscan_MAM_dom,pfscan_Ig-like_dom	-	no_errors	MDGA1	HGNC	ENSG00000112139				76	0	0	110	23	17.2932
FOXP4	0	genome.wustl.edu	37	6	41562617	41562617	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	6	41562617	41562617	C	T	SNP	FOXP4	ENST00000307972	human	ensembl	74_37	+1	known	missense	c.1546	p.R516C	1.000	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXP4	HGNC	ENSG00000137166				65	0	0	88	21	19.2661
PRICKLE4	0	genome.wustl.edu	37	6	41751963	41751963	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	6	41751963	41751963	C	T	SNP	PRICKLE4	ENST00000335515	human	ensembl	74_37	+1	known	missense	c.227	p.P76L	0.992	pfam_PET_domain	pfam_Znf_LIM,pfam_PET_domain,smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	PRICKLE4	HGNC	ENSG00000124593				78	0	0	84	19	18.4466
CUL9	0	genome.wustl.edu	37	6	43163940	43163940	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	6	43163940	43163940	C	T	SNP	CUL9	ENST00000252050	human	ensembl	74_37	+1	known	missense	c.2522	p.P841L	0.380	superfamily_ARM-type_fold	pfam_Cullin_N,pfam_CPH_domain,pfam_Znf_C6HC,pfam_APC_su10/DOC_dom,superfamily_Galactose-bd-like,superfamily_Cullin_homology,superfamily_ARM-type_fold,superfamily_UBA-like,smart_Cullin_neddylation_domain,smart_Znf_C6HC,pfscan_Znf_RING,pfscan_Cullin_homology	-	no_errors	CUL9	HGNC	ENSG00000112659				123	0	0	141	24	14.5455
TTBK1	0	genome.wustl.edu	37	6	43230733	43230733	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	6	43230733	43230733	T	C	SNP	TTBK1	ENST00000259750	human	ensembl	74_37	+1	known	missense	c.1631	p.V544A	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	TTBK1	HGNC	ENSG00000146216				22	0	0	34	6	15
SLC22A7	0	genome.wustl.edu	37	6	43270090	43270090	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	6	43270090	43270090	C	T	SNP	SLC22A7	ENST00000372585	human	ensembl	74_37	+1	known	missense	c.1214	p.T405M	0.142	pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Orgcat_transp	pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Orgcat_transp	-	no_errors	SLC22A7	HGNC	ENSG00000137204				30	0	0	49	17	25.7576
TFAP2B	0	genome.wustl.edu	37	6	50810964	50810964	+	Silent	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	6	50810964	50810964	C	T	SNP	TFAP2B	ENST00000263046	human	ensembl	74_37	+1	known	silent	c.1269	p.L423	1.000	pfam_TF_AP2_C	pfam_TF_AP2_C,prints_TF_AP2_beta,prints_TF_AP2_C	-	no_errors	TFAP2B	HGNC	ENSG00000008196				139	1	0.714286	172	41	19.2488
MLIP	0	genome.wustl.edu	37	6	53883888	53883888	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	6	53883888	53883888	C	T	SNP	MLIP	ENST00000274897	human	ensembl	74_37	+1	known	missense	c.62	p.T21M	0.990	NULL	NULL	-	no_errors	MLIP	HGNC	ENSG00000146147				52	0	0	53	9	14.5161
DST	0	genome.wustl.edu	37	6	56485219	56485219	+	Nonsense_Mutation	SNP	T	T	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	6	56485219	56485219	T	A	SNP	DST	ENST00000370765	human	ensembl	74_37	-1	known	nonsense	c.3613	p.R1205*	0.000	NULL	pfam_Plectin_repeat,pfam_Spectrin_repeat,superfamily_Ig/albumin-bd,smart_Spectrin/alpha-actinin,smart_Plectin_repeat	-	no_errors	DST	HGNC	ENSG00000151914				119	1	0.833333	130	36	21.6867
DST	0	genome.wustl.edu	37	6	56505005	56505005	+	Nonsense_Mutation	SNP	A	A	C			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	6	56505005	56505005	A	C	SNP	DST	ENST00000370754	human	ensembl	74_37	-1	known	nonsense	c.2327	p.L776*	1.000	superfamily_ABC1_TM_dom	pfam_Spectrin_repeat,pfam_Plectin_repeat,pfam_CH-domain,pfam_GAS2_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_GAS2_dom,superfamily_ABC1_TM_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,smart_EF_hand_dom,smart_GAS2_dom,pfscan_CH-domain,pfscan_EF_hand_dom	-	no_errors	DST	HGNC	ENSG00000151914				74	0	0	90	19	17.4312
DST	0	genome.wustl.edu	37	6	56507562	56507562	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	6	56507562	56507562	G	A	SNP	DST	ENST00000446842	human	ensembl	74_37	-1	known	missense	c.25	p.R9C	0.964	NULL	pfam_Spectrin_repeat,pfam_Plectin_repeat,pfam_GAS2_dom,superfamily_GAS2_dom,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,smart_EF_hand_dom,smart_GAS2_dom,pfscan_EF_hand_dom	-	no_errors	DST	HGNC	ENSG00000151914				115	0	0	128	23	15.2318
EYS	0	genome.wustl.edu	37	6	66054021	66054021	+	Silent	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	6	66054021	66054021	C	T	SNP	EYS	ENST00000370616	human	ensembl	74_37	-1	known	silent	c.1509	p.L503	0.000	NULL	pfam_Laminin_G,pfam_EG-like_dom,superfamily_ConA-like_lec_gl_sf,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	EYS	HGNC	ENSG00000188107				74	0	0	97	25	20.4918
RREB1	0	genome.wustl.edu	37	6	7231875	7231875	+	Silent	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	6	7231875	7231875	C	T	SNP	RREB1	ENST00000379938	human	ensembl	74_37	+1	known	silent	c.3543	p.I1181	0.313	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	RREB1	HGNC	ENSG00000124782				28	0	0	42	7	14.2857
CD109	0	genome.wustl.edu	37	6	74497026	74497026	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	6	74497026	74497026	G	T	SNP	CD109	ENST00000287097	human	ensembl	74_37	+1	known	missense	c.2407	p.G803C	0.005	NULL	pfam_A2M_comp,pfam_A2M_N_2,pfam_Macroglobln_a2,pfam_A-macroglobulin_rcpt-bd,pfam_A2M_N,pfam_MacrogloblnA2_thiol-ester-bond,superfamily_Terpenoid_cyclase/PrenylTrfase,superfamily_A-macroglobulin_rcpt-bd	-	no_errors	CD109	HGNC	ENSG00000156535				99	0	0	147	38	20.5405
DSP	0	genome.wustl.edu	37	6	7583008	7583008	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	6	7583008	7583008	G	A	SNP	DSP	ENST00000379802	human	ensembl	74_37	+1	known	missense	c.5513	p.R1838H	0.841	NULL	pfam_Plectin_repeat,smart_Spectrin/alpha-actinin,smart_Plectin_repeat	-	no_errors	DSP	HGNC	ENSG00000096696				186	1	0.534759	203	45	18.1452
TTK	0	genome.wustl.edu	37	6	80751905	80751905	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	6	80751905	80751905	A	G	SNP	TTK	ENST00000369798	human	ensembl	74_37	+1	known	missense	c.2560	p.R854G	0.014	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	TTK	HGNC	ENSG00000112742				55	0	0	50	14	21.875
FAXC	0	genome.wustl.edu	37	6	99729068	99729068	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	6	99729068	99729068	T	G	SNP	FAXC	ENST00000389677	human	ensembl	74_37	-1	known	missense	c.1202	p.D401A	1.000	NULL	superfamily_Thioredoxin-like_fold,superfamily_Glutathione-S-Trfase_C-like	-	no_errors	FAXC	HGNC	ENSG00000146267				116	1	0.854701	125	34	21.3836
ZAN	0	genome.wustl.edu	37	7	100361492	100361492	+	Silent	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	7	100361492	100361492	G	A	SNP	ZAN	ENST00000546292	human	ensembl	74_37	+1	known	silent	c.4050	p.S1350	0.019	smart_Unchr_dom_Cys-rich	pfam_VWF_type-D,pfam_MAM_dom,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_ConA-like_lec_gl_sf,superfamily_TIL_dom,smart_MAM_dom,smart_VWC_out,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_MAM_dom	-	no_errors	ZAN	HGNC	ENSG00000146839				232	0	0	307	55	15.1934
CUX1	0	genome.wustl.edu	37	7	101921277	101921277	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	7	101921277	101921277	C	T	SNP	CUX1	ENST00000292538	human	ensembl	74_37	+1	known	missense	c.1621	p.R541C	0.994	pfam_CASP_C	pfam_CASP_C,superfamily_LemA-like_dom	-	no_errors	CUX1	HGNC	ENSG00000257923				25	0	0	37	8	17.7778
CUX1	0	genome.wustl.edu	37	7	101925162	101925162	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	7	101925162	101925162	C	T	SNP	CUX1	ENST00000292538	human	ensembl	74_37	+1	known	missense	c.1852	p.R618C	0.963	pfam_CASP_C	pfam_CASP_C,superfamily_LemA-like_dom	-	no_errors	CUX1	HGNC	ENSG00000257923				72	0	0	117	15	11.3636
ALKBH4	0	genome.wustl.edu	37	7	102098010	102098010	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	7	102098010	102098010	G	A	SNP	ALKBH4	ENST00000292566	human	ensembl	74_37	-1	known	missense	c.740	p.A247V	0.042	pfam_Oxoglu/Fe-dep_dioxygenase	pfam_Oxoglu/Fe-dep_dioxygenase	-	no_errors	ALKBH4	HGNC	ENSG00000160993				27	0	0	55	8	12.6984
RELN	0	genome.wustl.edu	37	7	103155812	103155812	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	7	103155812	103155812	C	T	SNP	RELN	ENST00000424685	human	ensembl	74_37	-1	known	missense	c.7939	p.G2647S	1.000	superfamily_Sialidases	pfam_EGF_extracell,pfam_Reeler_dom,pfam_BNR_rpt,superfamily_Sialidases,superfamily_Growth_fac_rcpt_N_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Reeler_dom	-	no_errors	RELN	HGNC	ENSG00000189056				41	0	0	69	11	13.75
RELN	0	genome.wustl.edu	37	7	103163922	103163922	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	7	103163922	103163922	G	A	SNP	RELN	ENST00000424685	human	ensembl	74_37	-1	known	missense	c.7406	p.T2469I	1.000	superfamily_Sialidases	pfam_EGF_extracell,pfam_Reeler_dom,pfam_BNR_rpt,superfamily_Sialidases,superfamily_Growth_fac_rcpt_N_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Reeler_dom	-	no_errors	RELN	HGNC	ENSG00000189056				195	0	0	256	57	18.2109
RINT1	0	genome.wustl.edu	37	7	105182968	105182968	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	7	105182968	105182968	C	T	SNP	RINT1	ENST00000497979	human	ensembl	74_37	+1	known	missense	c.166	p.R56C	0.008	NULL	NULL	-	no_errors	RINT1	HGNC	ENSG00000135249				105	0	0	158	11	6.50888
ATXN7L1	0	genome.wustl.edu	37	7	105516960	105516960	+	Silent	SNP	A	A	G			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	7	105516960	105516960	A	G	SNP	ATXN7L1	ENST00000419735	human	ensembl	74_37	-1	known	silent	c.45	p.A15	0.998	NULL	pfam_SCA7_dom	-	no_errors	ATXN7L1	HGNC	ENSG00000146776				35	0	0	49	10	16.9492
DLD	0	genome.wustl.edu	37	7	107559493	107559493	+	Silent	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	7	107559493	107559493	G	A	SNP	DLD	ENST00000205402	human	ensembl	74_37	+1	known	silent	c.1413	p.L471	1.000	pfam_Pyr_nucl-diS_OxRdtase_dimer,superfamily_FAD/NAD-linked_Rdtase_dimer,tigrfam_Lipoamide_DH	pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,pfam_Pyr_nucl-diS_OxRdtase_dimer,pfam_Pyr_OxRdtase_NAD-bd_dom,pfam_FAD_bind_dom,pfam_GIDA-rel,superfamily_FAD/NAD-linked_Rdtase_dimer,prints_FAD_pyr_nucl-diS_OxRdtase,prints_Hg_reductase,prints_Pyridine_nuc-diS_OxRdtase_2,tigrfam_Lipoamide_DH	-	no_errors	DLD	HGNC	ENSG00000091140				144	0	0	215	14	6.11354
NRCAM	0	genome.wustl.edu	37	7	107818475	107818475	+	Silent	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	7	107818475	107818475	C	T	SNP	NRCAM	ENST00000379028	human	ensembl	74_37	-1	known	silent	c.2934	p.P978	0.993	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	NRCAM	HGNC	ENSG00000091129				93	0	0	92	18	16.3636
GPER1	0	genome.wustl.edu	37	7	1131745	1131745	+	Silent	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	7	1131745	1131745	C	T	SNP	GPER1	ENST00000297469	human	ensembl	74_37	+1	known	silent	c.381	p.A127	0.003	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	-	no_errors	GPER1	HGNC	ENSG00000164850				141	0	0	203	71	25.9124
PPP1R3A	0	genome.wustl.edu	37	7	113519666	113519666	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	7	113519666	113519666	G	A	SNP	PPP1R3A	ENST00000284601	human	ensembl	74_37	-1	known	missense	c.1481	p.S494L	0.000	NULL	pfam_CBM_21,pfscan_CBM_21	-	no_errors	PPP1R3A	HGNC	ENSG00000154415				96	0	0	95	19	16.6667
HYAL4	0	genome.wustl.edu	37	7	123516944	123516944	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	7	123516944	123516944	C	T	SNP	HYAL4	ENST00000223026	human	ensembl	74_37	+1	known	missense	c.1181	p.A394V	0.069	pirsf_Hyaluronidase	pfam_Hyaluronidase,superfamily_Glycoside_hydrolase_SF,pirsf_Hyaluronidase,prints_Hyaluronidase	-	no_errors	HYAL4	HGNC	ENSG00000106302				135	0	0	163	30	15.544
GCC1	0	genome.wustl.edu	37	7	127222456	127222456	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	7	127222456	127222456	G	A	SNP	GCC1	ENST00000321407	human	ensembl	74_37	-1	known	missense	c.1940	p.A647V	0.015	superfamily_ARM-type_fold	pfam_GRIP,superfamily_ARM-type_fold,smart_GRIP,pfscan_GRIP	-	no_errors	GCC1	HGNC	ENSG00000179562				134	1	0.740741	211	40	15.9363
SND1	0	genome.wustl.edu	37	7	127729627	127729627	+	Silent	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	7	127729627	127729627	C	T	SNP	SND1	ENST00000354725	human	ensembl	74_37	+1	known	silent	c.2505	p.A835	0.972	superfamily_Staphylococal_nuclease_OB-fold,pirsf_Silence_cplx_Nase-comp_TudorSN	pfam_Staphylococal_nuclease_OB-fold,pfam_Tudor,superfamily_Staphylococal_nuclease_OB-fold,smart_Staphylococal_nuclease_OB-fold,smart_Tudor,pirsf_Silence_cplx_Nase-comp_TudorSN,pfscan_Tudor,pfscan_Staphylococal_nuclease_OB-fold	-	no_errors	SND1	HGNC	ENSG00000197157				108	0	0	157	14	8.18713
HILPDA	0	genome.wustl.edu	37	7	128097324	128097324	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	7	128097324	128097324	T	C	SNP	HILPDA	ENST00000257696	human	ensembl	74_37	+1	known	missense	c.2	p.M1T	1.000	NULL	NULL	-	no_errors	HILPDA	HGNC	ENSG00000135245				83	0	0	130	14	9.72222
TSGA13	0	genome.wustl.edu	37	7	130356601	130356601	+	Silent	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	7	130356601	130356601	G	A	SNP	TSGA13	ENST00000356588	human	ensembl	74_37	-1	known	silent	c.558	p.S186	0.992	NULL	NULL	-	no_errors	TSGA13	HGNC	ENSG00000213265				118	0	0	174	36	17.1429
MKLN1	0	genome.wustl.edu	37	7	131172535	131172535	+	RNA	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	7	131172535	131172535	G	A	SNP	MKLN1	ENST00000498778	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.736	-	-	-	no_errors	MKLN1	HGNC	ENSG00000128585				44	0	0	56	14	20
EXOC4	0	genome.wustl.edu	37	7	132973839	132973839	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	7	132973839	132973839	G	A	SNP	EXOC4	ENST00000253861	human	ensembl	74_37	+1	known	missense	c.440	p.S147N	1.000	NULL	pfam_Sec8_exocyst	-	no_errors	EXOC4	HGNC	ENSG00000131558				47	0	0	72	15	17.2414
CALD1	0	genome.wustl.edu	37	7	134632499	134632499	+	Silent	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	7	134632499	134632499	C	T	SNP	CALD1	ENST00000361388	human	ensembl	74_37	+1	known	silent	c.1086	p.A362	0.311	pfam_Caldesmon_LSP	pfam_Caldesmon_LSP,prints_Caldesmon	-	no_errors	CALD1	HGNC	ENSG00000122786				63	0	0	78	13	14.2857
MIR490	0	genome.wustl.edu	37	7	136587905	136587905	+	RNA	SNP	T	T	C			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	7	136587905	136587905	T	C	SNP	MIR490	ENST00000608269	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	hsa-mir-490	miRBase	ENSG00000234352				171	0	0	252	45	15.1515
MKRN1	0	genome.wustl.edu	37	7	140156541	140156541	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	7	140156541	140156541	G	A	SNP	MKRN1	ENST00000495305	human	ensembl	74_37	-1	known	missense	c.440	p.S147L	0.569	NULL	pfam_Znf_CCCH,smart_Znf_CCCH	-	no_errors	MKRN1	HGNC	ENSG00000133606				70	0	0	98	15	13.2743
MGAM	0	genome.wustl.edu	37	7	141727518	141727518	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	7	141727518	141727518	G	A	SNP	MGAM	ENST00000549489	human	ensembl	74_37	+1	known	missense	c.1204	p.A402T	0.503	pfam_Glyco_hydro_31,superfamily_Glycoside_hydrolase_SF	pfam_Glyco_hydro_31,pfam_P_trefoil,superfamily_Glycoside_hydrolase_SF,superfamily_Gal_mutarotase_SF_dom,smart_P_trefoil	-	no_errors	MGAM	HGNC	ENSG00000257335				30	0	0	51	14	21.5385
EPHB6	0	genome.wustl.edu	37	7	142564290	142564290	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	7	142564290	142564290	C	T	SNP	EPHB6	ENST00000392957	human	ensembl	74_37	+1	known	missense	c.1514	p.T505M	0.967	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,pfam_SAM_2,pfam_SAM_type1,pfam_Tyr-kin_ephrin_A/B_rcpt-like,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt_N_dom,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_dom	-	no_errors	EPHB6	HGNC	ENSG00000106123				95	0	0	124	14	10.1449
NOBOX	0	genome.wustl.edu	37	7	144098303	144098303	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	7	144098303	144098303	C	T	SNP	NOBOX	ENST00000467773	human	ensembl	74_37	-1	known	missense	c.680	p.R227H	0.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	-	no_errors	NOBOX	HGNC	ENSG00000106410				35	0	0	53	7	11.6667
ZNF425	0	genome.wustl.edu	37	7	148801229	148801229	+	Silent	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	7	148801229	148801229	G	A	SNP	ZNF425	ENST00000378061	human	ensembl	74_37	-1	known	silent	c.1734	p.D578	0.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Krueppel-associated_box-rel	-	no_errors	ZNF425	HGNC	ENSG00000204947				102	0	0	138	40	22.4719
ZNF862	0	genome.wustl.edu	37	7	149545202	149545202	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	7	149545202	149545202	C	T	SNP	ZNF862	ENST00000223210	human	ensembl	74_37	+1	known	missense	c.620	p.A207V	0.981	smart_Znf_TTF	pfam_Krueppel-associated_box,pfam_HATC_dom_C,superfamily_Krueppel-associated_box,superfamily_RNaseH-like_dom,smart_Krueppel-associated_box,smart_Znf_TTF,pfscan_Krueppel-associated_box	-	no_errors	ZNF862	HGNC	ENSG00000106479				61	0	0	126	10	7.35294
ABCB8	0	genome.wustl.edu	37	7	150730745	150730745	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	7	150730745	150730745	G	A	SNP	ABCB8	ENST00000297504	human	ensembl	74_37	+1	known	missense	c.200	p.R67Q	0.421	NULL	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_P-loop_NTPase,superfamily_ABC1_TM_dom,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom	-	no_errors	ABCB8	HGNC	ENSG00000197150				101	0	0	128	18	12.3288
CRYGN	0	genome.wustl.edu	37	7	151135151	151135151	+	Silent	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	7	151135151	151135151	G	A	SNP	CRYGN	ENST00000337323	human	ensembl	74_37	-1	known	silent	c.201	p.G67	0.376	pfam_Beta/gamma_crystallin,superfamily_G_crystallin-rel,smart_Beta/gamma_crystallin,pfscan_Beta/gamma_crystallin,prints_Beta/gamma_crystallin	pfam_Beta/gamma_crystallin,superfamily_G_crystallin-rel,smart_Beta/gamma_crystallin,pfscan_Beta/gamma_crystallin,prints_Beta/gamma_crystallin	-	no_errors	CRYGN	HGNC	ENSG00000127377				75	0	0	98	27	21.6
PTPRN2	0	genome.wustl.edu	37	7	157931052	157931052	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	7	157931052	157931052	C	A	SNP	PTPRN2	ENST00000404321	human	ensembl	74_37	-1	known	missense	c.1135	p.A379S	0.000	NULL	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Receptor_IA-2,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRN2	HGNC	ENSG00000155093				66	0	0	104	25	19.3798
WDR60	0	genome.wustl.edu	37	7	158738447	158738447	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	7	158738447	158738447	C	T	SNP	WDR60	ENST00000407559	human	ensembl	74_37	+1	known	missense	c.3178	p.P1060S	0.001	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat	-	no_errors	WDR60	HGNC	ENSG00000126870				21	0	0	33	5	13.1579
SOSTDC1	0	genome.wustl.edu	37	7	16502286	16502286	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	7	16502286	16502286	G	A	SNP	SOSTDC1	ENST00000307068	human	ensembl	74_37	-1	known	missense	c.508	p.R170W	0.998	pfam_Sclerostin/SOSTDC1,pfam_Cys_knot,pfscan_Cys_knot_C	pfam_Sclerostin/SOSTDC1,pfam_Cys_knot,pfam_DAN,pfscan_Cys_knot_C	-	no_errors	SOSTDC1	HGNC	ENSG00000171243				207	0	0	275	68	19.8251
SOSTDC1	0	genome.wustl.edu	37	7	16502300	16502300	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	7	16502300	16502300	C	T	SNP	SOSTDC1	ENST00000307068	human	ensembl	74_37	-1	known	missense	c.494	p.C165Y	1.000	pfam_Sclerostin/SOSTDC1,pfam_Cys_knot,pfam_DAN,pfscan_Cys_knot_C	pfam_Sclerostin/SOSTDC1,pfam_Cys_knot,pfam_DAN,pfscan_Cys_knot_C	-	no_errors	SOSTDC1	HGNC	ENSG00000171243				228	0	0	316	71	18.3463
DNAH11	0	genome.wustl.edu	37	7	21760398	21760398	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	7	21760398	21760398	G	A	SNP	DNAH11	ENST00000328843	human	ensembl	74_37	+1	known	missense	c.7211	p.S2404N	1.000	NULL	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH11	HGNC	ENSG00000105877				32	0	0	45	4	8.16327
SNX8	0	genome.wustl.edu	37	7	2317940	2317940	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	7	2317940	2317940	T	A	SNP	SNX8	ENST00000222990	human	ensembl	74_37	-1	known	missense	c.95	p.D32V	0.826	NULL	pfam_Phox,superfamily_Phox,smart_Phox,pfscan_Phox	-	no_errors	SNX8	HGNC	ENSG00000106266				38	0	0	66	4	5.71429
FAM221A	0	genome.wustl.edu	37	7	23741751	23741751	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	7	23741751	23741751	G	A	SNP	FAM221A	ENST00000344962	human	ensembl	74_37	+1	known	missense	c.865	p.A289T	0.982	NULL	NULL	-	no_errors	FAM221A	HGNC	ENSG00000188732				41	0	0	48	8	14.2857
CHST12	0	genome.wustl.edu	37	7	2472943	2472943	+	Silent	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	7	2472943	2472943	C	T	SNP	CHST12	ENST00000258711	human	ensembl	74_37	+1	known	silent	c.669	p.Y223	0.950	pfam_Sulfotransferase	pfam_Sulfotransferase,superfamily_P-loop_NTPase	-	no_errors	CHST12	HGNC	ENSG00000136213				95	0	0	118	35	22.8758
BRAT1	0	genome.wustl.edu	37	7	2580614	2580614	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	7	2580614	2580614	G	A	SNP	BRAT1	ENST00000340611	human	ensembl	74_37	-1	known	missense	c.1394	p.T465M	0.998	superfamily_ARM-type_fold	pfam_HEAT,superfamily_ARM-type_fold	-	no_errors	BRAT1	HGNC	ENSG00000106009				18	0	0	28	10	26.3158
HOXA2	0	genome.wustl.edu	37	7	27140938	27140938	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	7	27140938	27140938	G	T	SNP	HOXA2	ENST00000222718	human	ensembl	74_37	-1	known	missense	c.538	p.L180M	1.000	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa	-	no_errors	HOXA2	HGNC	ENSG00000105996				105	0	0	175	38	17.8404
HOXA3	0	genome.wustl.edu	37	7	27147924	27147924	+	Silent	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	7	27147924	27147924	C	T	SNP	HOXA3	ENST00000317201	human	ensembl	74_37	-1	known	silent	c.942	p.A314	0.869	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa	-	no_errors	HOXA3	HGNC	ENSG00000105997				20	0	0	27	8	22.8571
HOXA3	0	genome.wustl.edu	37	7	27150221	27150221	+	Silent	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	7	27150221	27150221	G	A	SNP	HOXA3	ENST00000317201	human	ensembl	74_37	-1	known	silent	c.39	p.Y13	1.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa	-	no_errors	HOXA3	HGNC	ENSG00000105997				87	0	0	116	24	17.1429
HOXA9	0	genome.wustl.edu	37	7	27204724	27204724	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	7	27204724	27204724	G	A	SNP	HOXA9	ENST00000343483	human	ensembl	74_37	-1	known	missense	c.353	p.A118V	1.000	pfam_Hox9_activation_N,pirsf_Homeobox_Hox9	pfam_Hox9_activation_N,pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pirsf_Homeobox_Hox9,pfscan_Homeobox_dom,prints_Homeobox_metazoa	-	no_errors	HOXA9	HGNC	ENSG00000078399				26	0	0	39	9	18.75
NME8	0	genome.wustl.edu	37	7	37901657	37901657	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	7	37901657	37901657	G	T	SNP	NME8	ENST00000199447	human	ensembl	74_37	+1	known	missense	c.298	p.G100C	0.994	pfam_Thioredoxin_domain,superfamily_Thioredoxin-like_fold	pfam_Nucleoside_diP_kinase,pfam_Thioredoxin_domain,superfamily_Nucleoside_diP_kinase,superfamily_Thioredoxin-like_fold,smart_Nucleoside_diP_kinase	-	no_errors	NME8	HGNC	ENSG00000086288				91	0	0	116	21	15.3285
GLI3	0	genome.wustl.edu	37	7	42005905	42005905	+	Silent	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	7	42005905	42005905	C	T	SNP	GLI3	ENST00000395925	human	ensembl	74_37	-1	known	silent	c.2766	p.T922	0.855	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	GLI3	HGNC	ENSG00000106571				34	0	0	68	6	8.10811
POLM	0	genome.wustl.edu	37	7	44112960	44112960	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	7	44112960	44112960	G	A	SNP	POLM	ENST00000242248	human	ensembl	74_37	-1	known	missense	c.1415	p.A472V	0.000	smart_DNA-dir_DNA_pol_X,pirsf_TdT/Mu	pfam_DNA_pol_lambd_fingers_domain,superfamily_DNA_pol_b-like_N,superfamily_DNA_pol_lambd_fingers_domain,superfamily_BRCT_dom,smart_DNA-dir_DNA_pol_X,pirsf_TdT/Mu,pfscan_BRCT_dom,prints_TdT/Mu,prints_DNA_pol_X,prints_DNA_pol_X_beta-like	-	no_errors	POLM	HGNC	ENSG00000122678				51	0	0	80	8	9.09091
OGDH	0	genome.wustl.edu	37	7	44734127	44734127	+	Silent	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	7	44734127	44734127	C	T	SNP	OGDH	ENST00000222673	human	ensembl	74_37	+1	known	silent	c.1620	p.Y540	0.960	pfam_DH_E1,pirsf_2oxoglutarate_DH_E1,tigrfam_2oxoglutarate_DH_E1	pfam_DH_E1,pfam_Transketolase-like_Pyr-bd,smart_Transketolase-like_Pyr-bd,pirsf_2oxoglutarate_DH_E1,tigrfam_2oxoglutarate_DH_E1	-	no_errors	OGDH	HGNC	ENSG00000105953				57	0	0	107	16	13.0081
TNS3	0	genome.wustl.edu	37	7	47343041	47343041	+	Silent	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	7	47343041	47343041	G	A	SNP	TNS3	ENST00000311160	human	ensembl	74_37	-1	known	silent	c.2964	p.F988	0.845	NULL	pfam_PTB,pfam_Tensin_phosphatase_C2-dom,pfam_SH2,superfamily_C2_dom,smart_Tyr_Pase_cat,smart_SH2,smart_PTB/PI_dom,pfscan_SH2,pfscan_Tyr/Dual-sp_Pase,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	TNS3	HGNC	ENSG00000136205				51	0	0	96	7	6.79612
PKD1L1	0	genome.wustl.edu	37	7	47879214	47879214	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	7	47879214	47879214	C	T	SNP	PKD1L1	ENST00000289672	human	ensembl	74_37	-1	known	missense	c.5599	p.D1867N	0.959	pfam_PLAT/LH2_dom,superfamily_Lipase_LipOase,smart_PLAT/LH2_dom,pfscan_PLAT/LH2_dom	pfam_PKD/REJ-like,pfam_PKD1_2_channel,pfam_PKD_dom,pfam_PLAT/LH2_dom,superfamily_Lipase_LipOase,superfamily_PKD_dom,smart_PKD/Chitinase_dom,smart_PLAT/LH2_dom,pfscan_PKD_dom,pfscan_PLAT/LH2_dom,pfscan_REJ-like	-	no_errors	PKD1L1	HGNC	ENSG00000158683				14	0	0	22	4	15.3846
RADIL	0	genome.wustl.edu	37	7	4841602	4841602	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	7	4841602	4841602	C	T	SNP	RADIL	ENST00000399583	human	ensembl	74_37	-1	known	missense	c.2524	p.G842R	0.025	NULL	pfam_Dil_domain,pfam_Ras-assoc,pfam_PDZ,superfamily_PDZ,superfamily_SMAD_FHA_domain,smart_Ras-assoc,smart_PDZ,pfscan_Dilute,pfscan_PDZ,pfscan_Ras-assoc	-	no_errors	RADIL	HGNC	ENSG00000157927				16	0	0	28	4	12.5
PAPOLB	0	genome.wustl.edu	37	7	4901260	4901260	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	7	4901260	4901260	C	T	SNP	PAPOLB	ENST00000404991	human	ensembl	74_37	-1	known	missense	c.179	p.R60H	0.971	pfam_PolA_pol_cen_dom,pirsf_PolyA_polymerase	pfam_PolA_pol_cen_dom,pfam_PolA_pol_RNA-bd_dom,pfam_Nucleotidyltransferase,superfamily_NuclTrfase_I_C,pirsf_PolyA_polymerase	-	no_errors	PAPOLB	HGNC	ENSG00000218823				35	0	0	51	13	20.3125
MMD2	0	genome.wustl.edu	37	7	4949602	4949602	+	Silent	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	7	4949602	4949602	G	A	SNP	MMD2	ENST00000404774	human	ensembl	74_37	-1	known	silent	c.519	p.G173	0.000	pfam_HlyIII-related	pfam_HlyIII-related	-	no_errors	MMD2	HGNC	ENSG00000136297				92	0	0	153	24	13.5593
SLC29A4	0	genome.wustl.edu	37	7	5327554	5327554	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	7	5327554	5327554	C	A	SNP	SLC29A4	ENST00000297195	human	ensembl	74_37	+1	known	missense	c.107	p.A36E	0.001	NULL	pfam_Eqnu_transpt,superfamily_MFS_dom_general_subst_transpt,prints_Eqnu_transpt	-	no_errors	SLC29A4	HGNC	ENSG00000164638				59	0	0	77	15	16.3043
FBXL18	0	genome.wustl.edu	37	7	5540290	5540290	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	7	5540290	5540290	G	A	SNP	FBXL18	ENST00000453700	human	ensembl	74_37	-1	known	missense	c.1610	p.T537M	1.000	NULL	pfam_F-box_dom,superfamily_F-box_dom,pfscan_F-box_dom	-	no_errors	FBXL18	HGNC	ENSG00000155034				34	0	0	47	10	17.5439
ZNF713	0	genome.wustl.edu	37	7	56007338	56007338	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	7	56007338	56007338	G	A	SNP	ZNF713	ENST00000429591	human	ensembl	74_37	+1	known	missense	c.932	p.R311H	0.165	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF713	HGNC	ENSG00000178665				192	1	0.518135	255	37	12.6712
FSCN1	0	genome.wustl.edu	37	7	5643549	5643549	+	Silent	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	7	5643549	5643549	C	T	SNP	FSCN1	ENST00000382361	human	ensembl	74_37	+1	known	silent	c.1167	p.R389	0.157	superfamily_Actin_cross-linking	pfam_Fascin-domain,superfamily_Actin_cross-linking	-	no_errors	FSCN1	HGNC	ENSG00000075618				80	0	0	115	20	14.8148
AUTS2	0	genome.wustl.edu	37	7	70254984	70254984	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	7	70254984	70254984	G	A	SNP	AUTS2	ENST00000342771	human	ensembl	74_37	+1	known	missense	c.2782	p.A928T	0.002	NULL	prints_AUTS2	-	no_errors	AUTS2	HGNC	ENSG00000158321				25	0	0	32	4	11.1111
WBSCR17	0	genome.wustl.edu	37	7	70885914	70885914	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	7	70885914	70885914	G	A	SNP	WBSCR17	ENST00000333538	human	ensembl	74_37	+1	known	missense	c.785	p.R262H	1.000	pfam_Glyco_trans_2	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	WBSCR17	HGNC	ENSG00000185274				412	1	0.242131	529	83	13.5621
NCF1B	0	genome.wustl.edu	37	7	72645891	72645891	+	RNA	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	7	72645891	72645891	C	T	SNP	NCF1B	ENST00000423083	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.982	-	-	-	no_errors	NCF1B	HGNC	ENSG00000182487				19	0	0	38	9	19.1489
TRIM50	0	genome.wustl.edu	37	7	72738631	72738631	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	7	72738631	72738631	C	T	SNP	TRIM50	ENST00000333149	human	ensembl	74_37	-1	known	missense	c.155	p.R52H	0.985	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl_sf,smart_Znf_RING,smart_Znf_B-box,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	TRIM50	HGNC	ENSG00000146755				76	0	0	104	19	15.4472
TBL2	0	genome.wustl.edu	37	7	72985188	72985188	+	Silent	SNP	A	A	G			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	7	72985188	72985188	A	G	SNP	TBL2	ENST00000305632	human	ensembl	74_37	-1	known	silent	c.993	p.G331	0.003	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,prints_G-protein_beta_WD-40_rep,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	TBL2	HGNC	ENSG00000106638				117	0	0	171	37	17.7885
WBSCR22	0	genome.wustl.edu	37	7	73106929	73106929	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	7	73106929	73106929	C	T	SNP	WBSCR22	ENST00000265758	human	ensembl	74_37	+1	known	missense	c.463	p.R155W	0.982	NULL	pfam_Unchr_MeTrfase_Williams-Beuren,pfam_Methyltransf_11	-	no_errors	WBSCR22	HGNC	ENSG00000071462				96	0	0	150	26	14.7727
POM121C	0	genome.wustl.edu	37	7	75052146	75052146	+	Silent	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	7	75052146	75052146	G	A	SNP	POM121C	ENST00000257665	human	ensembl	74_37	-1	known	silent	c.2115	p.F705	1.000	NULL	NULL	-	no_errors	POM121C	HGNC	ENSG00000135213				14	0	0	23	12	34.2857
PCLO	0	genome.wustl.edu	37	7	82387901	82387901	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	7	82387901	82387901	T	C	SNP	PCLO	ENST00000333891	human	ensembl	74_37	-1	known	missense	c.15419	p.Q5140R	1.000	superfamily_C2_dom	pfam_Znf_piccolo,pfam_C2_dom,pfam_PDZ,superfamily_C2_dom,superfamily_PDZ,superfamily_Znf_FYVE_PHD,smart_PDZ,smart_C2_dom,pfscan_C2_dom,pfscan_PDZ	-	no_errors	PCLO	HGNC	ENSG00000186472				283	0	0	403	33	7.56881
PCLO	0	genome.wustl.edu	37	7	82595405	82595405	+	Silent	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	7	82595405	82595405	C	T	SNP	PCLO	ENST00000333891	human	ensembl	74_37	-1	known	silent	c.3699	p.K1233	0.009	NULL	pfam_Znf_piccolo,pfam_C2_dom,pfam_PDZ,superfamily_C2_dom,superfamily_PDZ,superfamily_Znf_FYVE_PHD,smart_PDZ,smart_C2_dom,pfscan_C2_dom,pfscan_PDZ	-	no_errors	PCLO	HGNC	ENSG00000186472				424	0	0	581	87	13.024
DMTF1	0	genome.wustl.edu	37	7	86811625	86811625	+	Silent	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	7	86811625	86811625	C	T	SNP	DMTF1	ENST00000331242	human	ensembl	74_37	+1	known	silent	c.792	p.C264	1.000	pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb	pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	DMTF1	HGNC	ENSG00000135164				87	0	0	121	15	11.0294
ADAM22	0	genome.wustl.edu	37	7	87765316	87765316	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	7	87765316	87765316	C	T	SNP	ADAM22	ENST00000265727	human	ensembl	74_37	+1	known	missense	c.1190	p.T397M	0.965	pfam_Peptidase_M12B,pfscan_Peptidase_M12B	pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_ADAM_Cys-rich,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_Peptidase_M12B,prints_Blood-coag_inhib_Disintegrin	-	no_errors	ADAM22	HGNC	ENSG00000008277				166	0	0	183	19	9.40594
STEAP1	0	genome.wustl.edu	37	7	89793832	89793832	+	Silent	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	7	89793832	89793832	C	T	SNP	STEAP1	ENST00000297205	human	ensembl	74_37	+1	known	silent	c.804	p.H268	0.985	NULL	pfam_Fe3_Rdtase_TM_dom	-	no_errors	STEAP1	HGNC	ENSG00000164647				264	0	0	362	45	11.0565
STEAP2	0	genome.wustl.edu	37	7	89866228	89866228	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	7	89866228	89866228	C	T	SNP	STEAP2	ENST00000394626	human	ensembl	74_37	+1	known	missense	c.1357	p.P453S	0.000	NULL	pfam_Fe3_Rdtase_TM_dom	-	no_errors	STEAP2	HGNC	ENSG00000157214				71	0	0	103	17	14.1667
C7orf63	0	genome.wustl.edu	37	7	89939548	89939548	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	7	89939548	89939548	C	T	SNP	C7orf63	ENST00000389297	human	ensembl	74_37	+1	known	missense	c.2822	p.T941M	0.000	NULL	superfamily_ARM-type_fold	-	no_errors	C7orf63	HGNC	ENSG00000105792				54	0	0	82	21	20.3883
SAMD9	0	genome.wustl.edu	37	7	92732292	92732292	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	7	92732292	92732292	C	T	SNP	SAMD9	ENST00000379958	human	ensembl	74_37	-1	known	missense	c.3119	p.R1040H	0.026	NULL	pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,superfamily_P-loop_NTPase,smart_SAM,pfscan_SAM	-	no_errors	SAMD9	HGNC	ENSG00000205413				122	0	0	155	27	14.8352
COL1A2	0	genome.wustl.edu	37	7	94052330	94052330	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	7	94052330	94052330	G	A	SNP	COL1A2	ENST00000297268	human	ensembl	74_37	+1	known	missense	c.2465	p.R822H	1.000	NULL	pfam_Collagen,pfam_Fib_collagen_C,superfamily_Fibrinogen_a/b/g_C_dom,smart_Fib_collagen_C	-	no_errors	COL1A2	HGNC	ENSG00000164692				229	1	0.434783	348	69	16.5468
COL1A2	0	genome.wustl.edu	37	7	94057007	94057007	+	Silent	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	7	94057007	94057007	C	T	SNP	COL1A2	ENST00000297268	human	ensembl	74_37	+1	known	silent	c.3336	p.Y1112	0.870	NULL	pfam_Collagen,pfam_Fib_collagen_C,superfamily_Fibrinogen_a/b/g_C_dom,smart_Fib_collagen_C	-	no_errors	COL1A2	HGNC	ENSG00000164692				136	0	0	239	27	10.1504
PPP1R9A	0	genome.wustl.edu	37	7	94917878	94917878	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	7	94917878	94917878	A	G	SNP	PPP1R9A	ENST00000289495	human	ensembl	74_37	+1	known	missense	c.3526	p.S1176G	1.000	NULL	pfam_SAM_2,pfam_SAM_type1,pfam_PDZ,superfamily_PDZ,superfamily_SAM/pointed,superfamily_Smac_DIABLO-like,smart_PDZ,smart_SAM,pfscan_PDZ,pfscan_SAM	-	no_errors	PPP1R9A	HGNC	ENSG00000158528				106	0	0	155	34	17.9894
LMTK2	0	genome.wustl.edu	37	7	97821441	97821441	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	7	97821441	97821441	T	C	SNP	LMTK2	ENST00000297293	human	ensembl	74_37	+1	known	missense	c.1664	p.L555S	0.188	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	LMTK2	HGNC	ENSG00000164715				119	0	0	168	37	18.0488
ARPC1A	0	genome.wustl.edu	37	7	98935830	98935830	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	7	98935830	98935830	G	A	SNP	ARPC1A	ENST00000262942	human	ensembl	74_37	+1	known	missense	c.91	p.E31K	1.000	superfamily_WD40_repeat_dom,pirsf_ARPC2/3_su1	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pirsf_ARPC2/3_su1,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	ARPC1A	HGNC	ENSG00000241685				39	0	0	50	5	9.09091
AP4M1	0	genome.wustl.edu	37	7	99702683	99702683	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	7	99702683	99702683	T	C	SNP	AP4M1	ENST00000359593	human	ensembl	74_37	+1	known	missense	c.689	p.L230S	1.000	pfam_Clathrin_mu_C,superfamily_Clathrin_mu_C,pirsf_Clathrin_mu,pfscan_Clathrin_mu_C	pfam_Clathrin_mu_C,pfam_AP_mu_sigma_su,superfamily_Clathrin_mu_C,superfamily_Longin-like_dom,pirsf_Clathrin_mu,prints_Clathrin_mu,pfscan_Clathrin_mu_C	-	no_errors	AP4M1	HGNC	ENSG00000221838				111	0	0	142	32	18.3908
UBR5	0	genome.wustl.edu	37	8	103297394	103297394	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	8	103297394	103297394	G	A	SNP	UBR5	ENST00000520539	human	ensembl	74_37	-1	known	missense	c.5657	p.A1886V	1.000	NULL	pfam_HECT,pfam_E3_UbLigase_EDD_UBA,pfam_PABP_HYD,pfam_Znf_N-recognin,superfamily_HECT,superfamily_PABP_HYD,superfamily_RCC1/BLIP-II,smart_Znf_N-recognin_met,smart_PABP_HYD,smart_HECT,pfscan_HECT,pfscan_Znf_N-recognin	-	no_errors	UBR5	HGNC	ENSG00000104517				102	1	0.970874	190	33	14.7982
DCAF13	0	genome.wustl.edu	37	8	104432678	104432678	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	8	104432678	104432678	C	T	SNP	DCAF13	ENST00000297579	human	ensembl	74_37	+1	known	missense	c.713	p.A238V	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_Sof1,pfam_WD40_repeat,pfam_TIF_beta_prop-like,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DCAF13	HGNC	ENSG00000164934				23	0	0	34	4	10.5263
RP1L1	0	genome.wustl.edu	37	8	10470311	10470311	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	8	10470311	10470311	G	A	SNP	RP1L1	ENST00000382483	human	ensembl	74_37	-1	known	missense	c.1297	p.R433C	0.000	NULL	pfam_Doublecortin_dom,smart_Doublecortin_dom,pfscan_Doublecortin_dom	-	no_errors	RP1L1	HGNC	ENSG00000183638				79	0	0	131	31	19.1358
C8orf74	0	genome.wustl.edu	37	8	10555303	10555303	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	8	10555303	10555303	A	G	SNP	C8orf74	ENST00000304519	human	ensembl	74_37	+1	known	missense	c.436	p.M146V	0.000	NULL	NULL	-	no_errors	C8orf74	HGNC	ENSG00000171060				208	0	0	307	54	14.9584
XKR6	0	genome.wustl.edu	37	8	10756078	10756078	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	8	10756078	10756078	C	T	SNP	XKR6	ENST00000416569	human	ensembl	74_37	-1	known	missense	c.1310	p.R437Q	1.000	pfam_Transport_prot_XK	pfam_Transport_prot_XK	-	no_errors	XKR6	HGNC	ENSG00000171044				28	0	0	53	12	18.4615
TBC1D31	0	genome.wustl.edu	37	8	124140619	124140619	+	Silent	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	8	124140619	124140619	C	T	SNP	TBC1D31	ENST00000287380	human	ensembl	74_37	+1	known	silent	c.1983	p.S661	0.118	NULL	pfam_Rab-GTPase-TBC_dom,pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_Rab-GTPase-TBC_dom,smart_WD40_repeat,pfscan_Rab-GTPase-TBC_dom,pfscan_WD40_repeat_dom	-	no_errors	TBC1D31	HGNC	ENSG00000156787				174	0	0	225	47	17.2794
RNF139	0	genome.wustl.edu	37	8	125498442	125498442	+	Silent	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	8	125498442	125498442	G	A	SNP	RNF139	ENST00000303545	human	ensembl	74_37	+1	known	silent	c.552	p.L184	1.000	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING-CH,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF139	HGNC	ENSG00000170881				189	0	0	227	52	18.638
KIAA0196	0	genome.wustl.edu	37	8	126051080	126051080	+	Silent	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	8	126051080	126051080	G	A	SNP	KIAA0196	ENST00000318410	human	ensembl	74_37	-1	known	silent	c.3076	p.L1026	0.990	pfam_WASH_strumpellin	pfam_WASH_strumpellin,superfamily_Ig_E-set	-	no_errors	KIAA0196	HGNC	ENSG00000164961				247	0	0	325	28	7.93201
MYC	0	genome.wustl.edu	37	8	128753090	128753090	+	Silent	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	8	128753090	128753090	C	T	SNP	MYC	ENST00000377970	human	ensembl	74_37	+1	known	silent	c.1251	p.Y417	1.000	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom,prints_Tscrpt_reg_Myc	pfam_Tscrpt_reg_Myc_N,pfam_Myc-LZ,pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom,prints_Tscrpt_reg_Myc	-	no_errors	MYC	HGNC	ENSG00000136997				203	0	0	284	56	16.4706
ADCY8	0	genome.wustl.edu	37	8	131792892	131792892	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	8	131792892	131792892	G	A	SNP	ADCY8	ENST00000286355	human	ensembl	74_37	-1	known	missense	c.3500	p.T1167M	1.000	pfam_A/G_cyclase,superfamily_A/G_cyclase	pfam_A/G_cyclase,pfam_Adenylate_cyclase-like,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY8	HGNC	ENSG00000155897				145	0	0	201	31	13.3621
KCNK9	0	genome.wustl.edu	37	8	140630719	140630719	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	8	140630719	140630719	G	A	SNP	KCNK9	ENST00000303015	human	ensembl	74_37	-1	known	missense	c.907	p.R303C	0.810	pirsf_2pore_dom_K_chnl_TASK	pfam_2pore_dom_K_chnl_dom,pirsf_2pore_dom_K_chnl_TASK,prints_2pore_dom_K_chnl_TASK,prints_KCNK9,prints_2pore_dom_K_chnl	-	no_errors	KCNK9	HGNC	ENSG00000169427				124	0	0	171	32	15.7635
AGO2	0	genome.wustl.edu	37	8	141542570	141542570	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	8	141542570	141542570	C	T	SNP	AGO2	ENST00000220592	human	ensembl	74_37	-1	known	missense	c.2416	p.A806T	1.000	pfam_Piwi,superfamily_RNaseH-like_dom,smart_Piwi,pfscan_Piwi	pfam_Piwi,pfam_PAZ_dom,pfam_DUF1785,superfamily_RNaseH-like_dom,superfamily_PAZ_dom,smart_PAZ_dom,smart_Piwi,pfscan_PAZ_dom,pfscan_Piwi	-	no_errors	AGO2	HGNC	ENSG00000123908				58	0	0	64	8	11.1111
TSNARE1	0	genome.wustl.edu	37	8	143427220	143427220	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	8	143427220	143427220	C	T	SNP	TSNARE1	ENST00000307180	human	ensembl	74_37	-1	known	missense	c.122	p.R41H	0.648	NULL	pfam_T_SNARE_dom,superfamily_t-SNARE,smart_Syntaxin_N,smart_T_SNARE_dom,pfscan_T_SNARE_dom	-	no_errors	TSNARE1	HGNC	ENSG00000171045				112	1	0.884956	134	15	10.0671
CYP11B1	0	genome.wustl.edu	37	8	143961145	143961145	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	8	143961145	143961145	C	T	SNP	CYP11B1	ENST00000292427	human	ensembl	74_37	-1	known	missense	c.85	p.A29T	0.000	NULL	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_mitochondrial,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_B,prints_Cyt_P450	-	no_errors	CYP11B1	HGNC	ENSG00000160882				142	0	0	200	28	12.2807
MROH6	0	genome.wustl.edu	37	8	144652140	144652140	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	8	144652140	144652140	G	T	SNP	MROH6	ENST00000398882	human	ensembl	74_37	-1	known	missense	c.1139	p.A380D	0.349	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	MROH6	HGNC	ENSG00000204839				55	0	0	84	8	8.69565
EPPK1	0	genome.wustl.edu	37	8	144946637	144946637	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	8	144946637	144946637	C	T	SNP	EPPK1	ENST00000525985	human	ensembl	74_37	-1	known	missense	c.785	p.R262Q	0.848	NULL	pfam_Plectin_repeat,smart_Plectin_repeat	-	no_errors	EPPK1	HGNC	ENSG00000227184				14	0	0	23	10	30.303
PLEC	0	genome.wustl.edu	37	8	144996013	144996013	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	8	144996013	144996013	T	C	SNP	PLEC	ENST00000322810	human	ensembl	74_37	-1	known	missense	c.8387	p.Q2796R	0.848	NULL	pfam_Plectin_repeat,pfam_CH-domain,pfam_S10_plectin_N,superfamily_CH-domain,superfamily_Chorismate_mutase_type_II,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,pfscan_CH-domain	-	no_errors	PLEC	HGNC	ENSG00000178209				34	0	0	53	13	19.697
OPLAH	0	genome.wustl.edu	37	8	145113480	145113480	+	Silent	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	8	145113480	145113480	C	T	SNP	OPLAH	ENST00000426825	human	ensembl	74_37	-1	known	silent	c.702	p.T234	0.288	pfam_Hydantoinase_A	pfam_Hydantoinase_B,pfam_Hydantoinase_A,pfam_Hydant_A_N	-	no_errors	OPLAH	HGNC	ENSG00000178814				55	0	0	74	21	22.1053
ARHGAP39	0	genome.wustl.edu	37	8	145771183	145771183	+	Silent	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	8	145771183	145771183	G	A	SNP	ARHGAP39	ENST00000377307	human	ensembl	74_37	-1	known	silent	c.1971	p.L657	0.021	NULL	pfam_RhoGAP_dom,pfam_MyTH4_dom,superfamily_Rho_GTPase_activation_prot,superfamily_WW_dom,smart_WW_dom,smart_MyTH4_dom,smart_RhoGAP_dom,pfscan_MyTH4_dom,pfscan_WW_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP39	HGNC	ENSG00000147799				19	0	0	32	5	13.5135
NAT2	0	genome.wustl.edu	37	8	18257858	18257858	+	Silent	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	8	18257858	18257858	C	T	SNP	NAT2	ENST00000286479	human	ensembl	74_37	+1	known	silent	c.345	p.D115	0.697	pfam_Arylamine_N-AcTrfase,prints_Arylamine_N-AcTrfase	pfam_Arylamine_N-AcTrfase,prints_Arylamine_N-AcTrfase	-	no_errors	NAT2	HGNC	ENSG00000156006				166	0	0	215	49	18.5606
MYOM2	0	genome.wustl.edu	37	8	2040280	2040280	+	Silent	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	8	2040280	2040280	C	T	SNP	MYOM2	ENST00000262113	human	ensembl	74_37	+1	known	silent	c.1935	p.Y645	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	MYOM2	HGNC	ENSG00000036448				153	0	0	238	56	19.0476
DOK2	0	genome.wustl.edu	37	8	21769786	21769786	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	8	21769786	21769786	G	A	SNP	DOK2	ENST00000276420	human	ensembl	74_37	-1	known	missense	c.299	p.A100V	0.000	smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_Insln_rcpt_S1,smart_Pleckstrin_homology,smart_Insln_rcpt_S1,pfscan_Pleckstrin_homology,pfscan_Insln_rcpt_S1	-	no_errors	DOK2	HGNC	ENSG00000147443				16	0	0	17	3	15
HR	0	genome.wustl.edu	37	8	21983112	21983112	+	Silent	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	8	21983112	21983112	G	A	SNP	HR	ENST00000381418	human	ensembl	74_37	-1	known	silent	c.1539	p.H513	0.109	NULL	pfam_JmjC_dom,smart_JmjC_dom,pfscan_JmjC_dom	-	no_errors	HR	HGNC	ENSG00000168453				28	0	0	43	11	20.3704
ENSG00000254230	0	genome.wustl.edu	37	8	22424547	22424547	+	Splice_Site	SNP	C	C	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	8	22424547	22424547	C	A	SNP	ENSG00000254230	ENST00000517384	human	ensembl	74_37	-1	known	splice_site	c.NULL	NULL	0.001	-	-	-	no_errors	RP11-582J16.3	Clone_based_vega_gene	ENSG00000254230				62	0	0	109	24	18.0451
ADAM7	0	genome.wustl.edu	37	8	24333950	24333950	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	8	24333950	24333950	G	A	SNP	ADAM7	ENST00000175238	human	ensembl	74_37	+1	known	missense	c.638	p.R213H	0.714	pfam_Peptidase_M12B,pfscan_Peptidase_M12B	pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_ADAM_Cys-rich,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_Peptidase_M12B,prints_Blood-coag_inhib_Disintegrin	-	no_errors	ADAM7	HGNC	ENSG00000069206				78	0	0	123	16	11.5108
NEFM	0	genome.wustl.edu	37	8	24771772	24771772	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	8	24771772	24771772	G	A	SNP	NEFM	ENST00000221166	human	ensembl	74_37	+1	known	missense	c.466	p.E156K	1.000	pfam_IF	pfam_IF,pfam_Intermed_filament_DNA-bd,superfamily_Prefoldin,prints_Keratin_I	-	no_errors	NEFM	HGNC	ENSG00000104722				25	0	0	40	6	13.0435
CDCA2	0	genome.wustl.edu	37	8	25365223	25365223	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	8	25365223	25365223	G	T	SNP	CDCA2	ENST00000330560	human	ensembl	74_37	+1	known	missense	c.3041	p.R1014M	0.001	NULL	NULL	-	no_errors	CDCA2	HGNC	ENSG00000184661				132	1	0.75188	212	41	16.2055
KIF13B	0	genome.wustl.edu	37	8	28989881	28989881	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	8	28989881	28989881	G	T	SNP	KIF13B	ENST00000524189	human	ensembl	74_37	-1	known	missense	c.2886	p.N962K	0.999	NULL	pfam_Kinesin_motor_dom,pfam_Kinesin-like,pfam_CAP-Gly_domain,pfam_KIF1B,pfam_FHA_dom,superfamily_P-loop_NTPase,superfamily_CAP-Gly_domain,superfamily_SMAD_FHA_domain,smart_Kinesin_motor_dom,pfscan_CAP-Gly_domain,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF13B	HGNC	ENSG00000197892				89	0	0	150	28	15.7303
TEX15	0	genome.wustl.edu	37	8	30700994	30700994	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	8	30700994	30700994	G	A	SNP	TEX15	ENST00000256246	human	ensembl	74_37	-1	known	missense	c.5540	p.S1847L	0.000	NULL	NULL	-	no_errors	TEX15	HGNC	ENSG00000133863				166	0	0	266	43	13.9159
NRG1	0	genome.wustl.edu	37	8	32505672	32505672	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	8	32505672	32505672	A	G	SNP	NRG1	ENST00000520502	human	ensembl	74_37	+1	known	missense	c.436	p.R146G	0.952	NULL	smart_EG-like_dom,pfscan_EG-like_dom	-	no_errors	NRG1	HGNC	ENSG00000157168				133	0	0	172	34	16.5049
KCNU1	0	genome.wustl.edu	37	8	36766851	36766851	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	8	36766851	36766851	A	T	SNP	KCNU1	ENST00000399881	human	ensembl	74_37	+1	known	missense	c.2129	p.Y710F	0.000	NULL	pfam_K_chnl_Ca-activ_BK_asu,pfam_2pore_dom_K_chnl_dom,prints_K_chnl_Ca-activ_BK_asu	-	no_errors	KCNU1	HGNC	ENSG00000215262				431	0	0	497	89	15.1877
GOT1L1	0	genome.wustl.edu	37	8	37792610	37792610	+	Silent	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	8	37792610	37792610	G	A	SNP	GOT1L1	ENST00000307599	human	ensembl	74_37	-1	known	silent	c.1053	p.H351	0.479	pfam_Aminotransferase_I/II,superfamily_PyrdxlP-dep_Trfase,prints_Asp_trans	pfam_Aminotransferase_I/II,superfamily_PyrdxlP-dep_Trfase,prints_Asp_trans	-	no_errors	GOT1L1	HGNC	ENSG00000169154				49	0	0	87	9	9.375
TM2D2	0	genome.wustl.edu	37	8	38852991	38852991	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	8	38852991	38852991	G	A	SNP	TM2D2	ENST00000397070	human	ensembl	74_37	-1	known	missense	c.32	p.T11M	0.000	NULL	pfam_TM2	-	no_errors	TM2D2	HGNC	ENSG00000169490				136	0	0	183	36	16.4384
ADAM2	0	genome.wustl.edu	37	8	39624771	39624771	+	Splice_Site	SNP	C	C	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	8	39624771	39624771	C	A	SNP	ADAM2	ENST00000265708	human	ensembl	74_37	-1	known	splice_site	c.1213-1	e13-1	0.984	-	-	-	no_errors	ADAM2	HGNC	ENSG00000104755				223	0	0	298	56	15.8192
IKBKB	0	genome.wustl.edu	37	8	42129709	42129709	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	8	42129709	42129709	C	T	SNP	IKBKB	ENST00000520810	human	ensembl	74_37	+1	known	nonsense	c.91	p.R31*	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_IKKbetaNEMObind,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,pfscan_Ubiquitin_supergroup,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	IKBKB	HGNC	ENSG00000104365				151	0	0	218	32	12.8
PXDNL	0	genome.wustl.edu	37	8	52321597	52321597	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	8	52321597	52321597	C	T	SNP	PXDNL	ENST00000356297	human	ensembl	74_37	-1	known	missense	c.2587	p.A863T	0.886	pfam_Haem_peroxidase_animal,superfamily_Haem_peroxidase,pfscan_Haem_peroxidase_animal	pfam_Haem_peroxidase_animal,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_VWF_C,pfam_Leu-rich_rpt,superfamily_Haem_peroxidase,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,smart_VWF_C,prints_Haem_peroxidase_animal_subgr,pfscan_VWF_C,pfscan_Haem_peroxidase_animal,pfscan_Ig-like_dom	-	no_errors	PXDNL	HGNC	ENSG00000147485				34	0	0	70	13	15.6627
SOX17	0	genome.wustl.edu	37	8	55372549	55372549	+	Silent	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	8	55372549	55372549	C	T	SNP	SOX17	ENST00000297316	human	ensembl	74_37	+1	known	silent	c.1239	p.D413	0.863	NULL	pfam_Sox_C_TAD,pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	-	no_errors	SOX17	HGNC	ENSG00000164736				54	0	0	92	11	10.6796
RP1	0	genome.wustl.edu	37	8	55542107	55542107	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	8	55542107	55542107	C	T	SNP	RP1	ENST00000220676	human	ensembl	74_37	+1	known	nonsense	c.5665	p.Q1889*	0.980	NULL	pfam_Doublecortin_dom,smart_Doublecortin_dom,pfscan_Doublecortin_dom	-	no_errors	RP1	HGNC	ENSG00000104237				103	0	0	133	27	16.875
ANGPT2	0	genome.wustl.edu	37	8	6371315	6371315	+	Silent	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	8	6371315	6371315	C	T	SNP	ANGPT2	ENST00000325203	human	ensembl	74_37	-1	known	silent	c.1083	p.S361	0.782	pfam_Fibrinogen_a/b/g_C_dom,superfamily_Fibrinogen_a/b/g_C_dom,smart_Fibrinogen_a/b/g_C_dom	pfam_Fibrinogen_a/b/g_C_dom,superfamily_Fibrinogen_a/b/g_C_dom,smart_Fibrinogen_a/b/g_C_dom	-	no_errors	ANGPT2	HGNC	ENSG00000091879				87	0	0	135	16	10.596
BHLHE22	0	genome.wustl.edu	37	8	65494237	65494237	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	8	65494237	65494237	C	T	SNP	BHLHE22	ENST00000321870	human	ensembl	74_37	+1	known	missense	c.890	p.A297V	1.000	superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	BHLHE22	HGNC	ENSG00000180828				15	0	0	33	6	15.3846
C8orf46	0	genome.wustl.edu	37	8	67405817	67405817	+	RNA	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	8	67405817	67405817	C	T	SNP	C8orf46	ENST00000521813	human	ensembl	74_37	+1	putative	rna	NULL	NULL	0.995	-	-	-	no_errors	C8orf46	HGNC	ENSG00000169085				49	0	0	56	15	21.1268
SGK3	0	genome.wustl.edu	37	8	67763157	67763157	+	Splice_Site	SNP	T	T	C			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	8	67763157	67763157	T	C	SNP	SGK3	ENST00000345714	human	ensembl	74_37	+1	known	splice_site	c.1320+2	e15+2	1.000	-	-	-	no_errors	SGK3	HGNC	ENSG00000104205				23	0	0	16	6	27.2727
PPP1R42	0	genome.wustl.edu	37	8	67929861	67929861	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	8	67929861	67929861	T	C	SNP	PPP1R42	ENST00000522909	human	ensembl	74_37	-1	known	missense	c.122	p.D41G	1.000	NULL	pfam_Leu-rich_rpt	-	no_errors	PPP1R42	HGNC	ENSG00000178125				27	0	0	42	5	10.6383
SULF1	0	genome.wustl.edu	37	8	70570765	70570765	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	8	70570765	70570765	G	T	SNP	SULF1	ENST00000260128	human	ensembl	74_37	+1	known	missense	c.2611	p.G871C	1.000	pirsf_Extracellular_sulfatase	pfam_Sulfatase,pfam_Extracellular_sulfatase_C,pfam_Phosphodiest/P_Trfase,superfamily_Alkaline_phosphatase_core,pirsf_Extracellular_sulfatase	-	no_errors	SULF1	HGNC	ENSG00000137573				73	0	0	82	17	17.1717
JPH1	0	genome.wustl.edu	37	8	75227703	75227703	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	8	75227703	75227703	C	T	SNP	JPH1	ENST00000342232	human	ensembl	74_37	-1	known	missense	c.532	p.D178N	1.000	pirsf_Junctophilin	pfam_MORN,smart_MORN,pirsf_Junctophilin	-	no_errors	JPH1	HGNC	ENSG00000104369				31	0	0	61	17	21.7949
IMPA1	0	genome.wustl.edu	37	8	82586109	82586109	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	8	82586109	82586109	T	C	SNP	IMPA1	ENST00000449740	human	ensembl	74_37	-1	known	missense	c.601	p.N201D	1.000	pfam_Inositol_monophosphatase,prints_Inositol_monoPase_Li-sen,prints_Inositol_monophosphatase	pfam_Inositol_monophosphatase,prints_Inositol_monoPase_Li-sen,prints_Inositol_monophosphatase	-	no_errors	IMPA1	HGNC	ENSG00000133731				117	0	0	178	27	13.1707
MFHAS1	0	genome.wustl.edu	37	8	8654933	8654933	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	8	8654933	8654933	G	A	SNP	MFHAS1	ENST00000276282	human	ensembl	74_37	-1	known	nonsense	c.3067	p.R1023*	1.000	NULL	pfam_Leu-rich_rpt,superfamily_P-loop_NTPase,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	MFHAS1	HGNC	ENSG00000147324				56	0	0	88	18	16.9811
POP1	0	genome.wustl.edu	37	8	99149090	99149090	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	8	99149090	99149090	G	A	SNP	POP1	ENST00000349693	human	ensembl	74_37	+1	known	missense	c.1270	p.D424N	1.000	NULL	pfam_RNase_P/MRP_POP1,pfam_POPLD	-	no_errors	POP1	HGNC	ENSG00000104356				210	0	0	306	37	10.7872
POP1	0	genome.wustl.edu	37	8	99149097	99149097	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	8	99149097	99149097	C	T	SNP	POP1	ENST00000349693	human	ensembl	74_37	+1	known	missense	c.1277	p.T426M	1.000	NULL	pfam_RNase_P/MRP_POP1,pfam_POPLD	-	no_errors	POP1	HGNC	ENSG00000104356				217	0	0	306	58	15.9341
KCNS2	0	genome.wustl.edu	37	8	99441361	99441361	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	8	99441361	99441361	C	T	SNP	KCNS2	ENST00000287042	human	ensembl	74_37	+1	known	missense	c.1154	p.T385M	0.998	pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom	pfam_T1-type_BTB,pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv3,prints_K_chnl_volt-dep_Kv6,prints_K_chnl_volt-dep_Kv2	-	no_errors	KCNS2	HGNC	ENSG00000156486				199	0	0	264	51	16.1905
FOXE1	0	genome.wustl.edu	37	9	100616467	100616467	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	9	100616467	100616467	C	T	SNP	FOXE1	ENST00000375123	human	ensembl	74_37	+1	known	missense	c.271	p.R91C	1.000	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXE1	HGNC	ENSG00000178919				69	0	0	66	21	24.1379
STX17	0	genome.wustl.edu	37	9	102677556	102677556	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	9	102677556	102677556	G	A	SNP	STX17	ENST00000259400	human	ensembl	74_37	+1	known	missense	c.35	p.R12H	1.000	NULL	pfam_T_SNARE_dom,superfamily_t-SNARE,smart_T_SNARE_dom,pfscan_T_SNARE_dom	-	no_errors	STX17	HGNC	ENSG00000136874				139	0	0	157	44	21.8905
ABCA1	0	genome.wustl.edu	37	9	107554238	107554238	+	Silent	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	9	107554238	107554238	G	A	SNP	ABCA1	ENST00000374736	human	ensembl	74_37	-1	known	silent	c.5799	p.C1933	0.955	superfamily_P-loop_NTPase,pfscan_ABC_transporter-like	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA1	HGNC	ENSG00000165029				50	0	0	65	7	9.72222
ACTL7B	0	genome.wustl.edu	37	9	111617781	111617781	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	9	111617781	111617781	C	T	SNP	ACTL7B	ENST00000374667	human	ensembl	74_37	-1	known	missense	c.430	p.E144K	1.000	pfam_Actin-related,smart_Actin-related	pfam_Actin-related,smart_Actin-related,prints_Actin-related	-	no_errors	ACTL7B	HGNC	ENSG00000148156				65	0	0	85	21	19.8113
PALM2	0	genome.wustl.edu	37	9	112705242	112705242	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	9	112705242	112705242	A	G	SNP	PALM2	ENST00000448454	human	ensembl	74_37	+1	known	missense	c.779	p.D260G	0.991	pfam_Paralemmin	pfam_Paralemmin	-	no_errors	PALM2	HGNC	ENSG00000243444				70	0	0	104	29	21.8045
TXNDC8	0	genome.wustl.edu	37	9	113088522	113088522	+	Splice_Site	SNP	T	T	C			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	9	113088522	113088522	T	C	SNP	TXNDC8	ENST00000374511	human	ensembl	74_37	-1	known	splice_site	c.190-2	e4-2	1.000	-	-	-	no_errors	TXNDC8	HGNC	ENSG00000204193				234	0	0	247	65	20.8333
TNC	0	genome.wustl.edu	37	9	117849343	117849343	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	9	117849343	117849343	T	G	SNP	TNC	ENST00000350763	human	ensembl	74_37	-1	known	missense	c.667	p.S223R	0.003	pfam_EGF_extracell,smart_EG-like_dom	pfam_Fibronectin_type3,pfam_Fibrinogen_a/b/g_C_dom,pfam_EGF_extracell,superfamily_Fibrinogen_a/b/g_C_dom,superfamily_Fibronectin_type3,smart_EG-like_dom,smart_Fibronectin_type3,smart_Fibrinogen_a/b/g_C_dom,pfscan_EG-like_dom,pfscan_Fibronectin_type3	-	no_errors	TNC	HGNC	ENSG00000041982				105	0	0	147	33	18.3333
PAPPA	0	genome.wustl.edu	37	9	119115183	119115183	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	9	119115183	119115183	G	A	SNP	PAPPA	ENST00000328252	human	ensembl	74_37	+1	known	missense	c.4163	p.R1388Q	1.000	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,pfam_Notch_dom,pfam_Peptidase_M43,superfamily_ConA-like_lec_gl_sf,superfamily_Sushi_SCR_CCP,superfamily_Fibronectin_type3,superfamily_Notch_dom,smart_LamG-like,smart_Notch_dom,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP,tigrfam_Myxo_disulph_rpt	-	no_errors	PAPPA	HGNC	ENSG00000182752				40	0	0	47	15	24.1935
ASTN2	0	genome.wustl.edu	37	9	119582954	119582954	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	9	119582954	119582954	G	A	SNP	ASTN2	ENST00000313400	human	ensembl	74_37	-1	known	nonsense	c.2149	p.Q717*	1.000	NULL	pfam_MACPF,superfamily_Fibronectin_type3,smart_MACPF	-	no_errors	ASTN2	HGNC	ENSG00000148219				125	0	0	135	25	15.625
C5	0	genome.wustl.edu	37	9	123725021	123725021	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	9	123725021	123725021	G	A	SNP	C5	ENST00000223642	human	ensembl	74_37	-1	known	missense	c.4432	p.R1478W	1.000	pfam_A-macroglobulin_rcpt-bd,superfamily_A-macroglobulin_rcpt-bd	pfam_A2M_comp,pfam_Macroglobln_a2,pfam_A2M_N_2,pfam_A-macroglobulin_rcpt-bd,pfam_Netrin_module_non-TIMP,pfam_A2M_N,pfam_Anaphylatoxin/fibulin,superfamily_Terpenoid_cyclase/PrenylTrfase,superfamily_TIMP-like_OB-fold,superfamily_A-macroglobulin_rcpt-bd,superfamily_Anaphylatoxin_comp_syst,smart_Anaphylatoxin/fibulin,smart_Netrin_module_non-TIMP,pfscan_Anaphylatoxin/fibulin,pfscan_Netrin_domain,prints_Anaphylatoxn_comp_syst_dom	-	no_errors	C5	HGNC	ENSG00000106804				204	0	0	189	44	18.8841
TYRP1	0	genome.wustl.edu	37	9	12694255	12694255	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	9	12694255	12694255	C	T	SNP	TYRP1	ENST00000388918	human	ensembl	74_37	+1	known	missense	c.259	p.R87W	1.000	superfamily_Unchr_di-copper_centre	pfam_Tyrosinase,superfamily_Unchr_di-copper_centre,prints_Tyrosinase	-	no_errors	TYRP1	HGNC	ENSG00000107165				41	0	0	59	8	11.9403
PBX3	0	genome.wustl.edu	37	9	128725316	128725316	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	9	128725316	128725316	A	G	SNP	PBX3	ENST00000373489	human	ensembl	74_37	+1	known	missense	c.1148	p.N383S	1.000	NULL	pfam_PBX,pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	-	no_errors	PBX3	HGNC	ENSG00000167081				54	0	0	33	12	26.6667
STXBP1	0	genome.wustl.edu	37	9	130442513	130442513	+	Silent	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	9	130442513	130442513	C	T	SNP	STXBP1	ENST00000373299	human	ensembl	74_37	+1	known	silent	c.1539	p.T513	0.140	pfam_Sec1-like,superfamily_Sec1-like	pfam_Sec1-like,superfamily_Sec1-like	-	no_errors	STXBP1	HGNC	ENSG00000136854				162	0	0	219	47	17.6692
ODF2	0	genome.wustl.edu	37	9	131221884	131221884	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	9	131221884	131221884	C	T	SNP	ODF2	ENST00000434106	human	ensembl	74_37	+1	known	missense	c.71	p.T24M	1.000	NULL	NULL	-	no_errors	ODF2	HGNC	ENSG00000136811				47	0	0	38	10	20.8333
SPTAN1	0	genome.wustl.edu	37	9	131346661	131346661	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	9	131346661	131346661	G	A	SNP	SPTAN1	ENST00000358161	human	ensembl	74_37	+1	known	missense	c.2294	p.R765H	1.000	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_EF-hand_Ca_insen,pfam_SH3_domain,pfam_EF_hand_dom,pfam_SH3_2,superfamily_SH3_domain,smart_Spectrin/alpha-actinin,smart_SH3_domain,smart_EF_hand_dom,pfscan_EF_hand_dom,pfscan_SH3_domain,prints_Spectrin_alpha_SH3,prints_SH3_domain	-	no_errors	SPTAN1	HGNC	ENSG00000197694				75	0	0	79	17	17.7083
MPDZ	0	genome.wustl.edu	37	9	13221386	13221386	+	Silent	SNP	T	T	C			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	9	13221386	13221386	T	C	SNP	MPDZ	ENST00000319217	human	ensembl	74_37	-1	known	silent	c.861	p.G287	1.000	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_PDZ,pfam_L27_2,superfamily_PDZ,smart_PDZ,pfscan_L27,pfscan_PDZ	-	no_errors	MPDZ	HGNC	ENSG00000107186				92	0	0	115	30	20.6897
EXOSC2	0	genome.wustl.edu	37	9	133577549	133577549	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	9	133577549	133577549	C	T	SNP	EXOSC2	ENST00000372358	human	ensembl	74_37	+1	known	missense	c.524	p.S175F	1.000	NULL	superfamily_NA-bd_OB-fold	-	no_errors	EXOSC2	HGNC	ENSG00000130713				86	0	0	81	20	19.802
FIBCD1	0	genome.wustl.edu	37	9	133780645	133780645	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	9	133780645	133780645	C	T	SNP	FIBCD1	ENST00000372338	human	ensembl	74_37	-1	known	missense	c.1102	p.V368M	1.000	pfam_Fibrinogen_a/b/g_C_dom,superfamily_Fibrinogen_a/b/g_C_dom,smart_Fibrinogen_a/b/g_C_dom	pfam_Fibrinogen_a/b/g_C_dom,superfamily_Fibrinogen_a/b/g_C_dom,smart_Fibrinogen_a/b/g_C_dom	-	no_errors	FIBCD1	HGNC	ENSG00000130720				39	0	0	59	9	13.2353
NTNG2	0	genome.wustl.edu	37	9	135114577	135114577	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	9	135114577	135114577	C	T	SNP	NTNG2	ENST00000360670	human	ensembl	74_37	+1	known	nonsense	c.1159	p.R387*	0.990	pfam_EGF_laminin,smart_EGF_laminin,smart_EG-like_dom	pfam_Laminin_N,pfam_EGF_laminin,pfam_EGF_extracell,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_Laminin_N	-	no_errors	NTNG2	HGNC	ENSG00000196358				95	0	0	122	7	5.42636
OLFM1	0	genome.wustl.edu	37	9	137998700	137998700	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	9	137998700	137998700	G	A	SNP	OLFM1	ENST00000371793	human	ensembl	74_37	+1	known	missense	c.782	p.R261Q	1.000	pfam_Olfac-like,smart_Olfac-like,pfscan_Olfac-like	pfam_Olfac-like,pfam_Noelin-1,superfamily_Quinonprotein_ADH-like_supfam,smart_Olfac-like,pfscan_Olfac-like	-	no_errors	OLFM1	HGNC	ENSG00000130558				22	0	0	19	4	17.3913
SNAPC4	0	genome.wustl.edu	37	9	139276353	139276353	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	9	139276353	139276353	G	A	SNP	SNAPC4	ENST00000298532	human	ensembl	74_37	-1	known	missense	c.2240	p.A747V	1.000	NULL	pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	SNAPC4	HGNC	ENSG00000165684				55	0	0	46	10	17.8571
ZMYND19	0	genome.wustl.edu	37	9	140477041	140477041	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	9	140477041	140477041	C	T	SNP	ZMYND19	ENST00000298585	human	ensembl	74_37	-1	known	missense	c.638	p.R213Q	1.000	NULL	pfam_Znf_MYND,pfscan_Znf_MYND	-	no_errors	ZMYND19	HGNC	ENSG00000165724				107	0	0	106	17	13.8211
EHMT1	0	genome.wustl.edu	37	9	140638449	140638449	+	Silent	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	9	140638449	140638449	C	T	SNP	EHMT1	ENST00000460843	human	ensembl	74_37	+1	known	silent	c.1077	p.D359	0.000	NULL	pfam_Ankyrin_rpt,pfam_SET_dom,pfam_Pre-SET_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Pre-SET_Zn-bd_sub,smart_SET_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SET_dom,pfscan_Pre-SET_dom,prints_Ankyrin_rpt	-	no_errors	EHMT1	HGNC	ENSG00000181090				89	0	0	96	20	17.2414
ADAMTSL1	0	genome.wustl.edu	37	9	18795510	18795510	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	9	18795510	18795510	G	A	SNP	ADAMTSL1	ENST00000380548	human	ensembl	74_37	+1	novel	missense	c.3793	p.V1265I	0.992	pfam_Ig_I-set,smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Thrombospondin_1_rpt,pfam_Immunoglobulin,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,smart_Ig_sub,smart_Ig_sub2,prints_Peptidase_M12B_ADAM-TS,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like_dom	-	no_errors	ADAMTSL1	HGNC	ENSG00000178031				32	0	0	34	7	17.0732
CDKN2A	0	genome.wustl.edu	37	9	21971194	21971194	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	9	21971194	21971194	C	T	SNP	CDKN2A	ENST00000446177	human	ensembl	74_37	-1	known	missense	c.164	p.G55D	1.000	superfamily_Ankyrin_rpt-contain_dom,pfscan_Ankyrin_rpt-contain_dom	superfamily_Ankyrin_rpt-contain_dom,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	CDKN2A	HGNC	ENSG00000147889				29	0	0	33	5	13.1579
PTENP1	0	genome.wustl.edu	37	9	33675379	33675379	+	RNA	SNP	C	C	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	9	33675379	33675379	C	A	SNP	PTENP1	ENST00000532280	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.999	-	-	-	no_errors	PTENP1	HGNC	ENSG00000237984				15	0	0	23	6	20.6897
PTENP1	0	genome.wustl.edu	37	9	33675400	33675400	+	RNA	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	9	33675400	33675400	G	A	SNP	PTENP1	ENST00000532280	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	PTENP1	HGNC	ENSG00000237984				28	0	0	32	6	15.7895
UNC13B	0	genome.wustl.edu	37	9	35400423	35400423	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	9	35400423	35400423	G	A	SNP	UNC13B	ENST00000378496	human	ensembl	74_37	+1	known	missense	c.4220	p.R1407H	1.000	NULL	pfam_Munc13_subgr_dom-2,pfam_Ca-dep_secretion_activator,pfam_C2_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_C2_dom,smart_C2_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,pfscan_C2_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,prints_C2_dom	-	no_errors	UNC13B	HGNC	ENSG00000198722				355	1	0.280899	377	98	20.6316
CA9	0	genome.wustl.edu	37	9	35674217	35674217	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	9	35674217	35674217	G	T	SNP	CA9	ENST00000378357	human	ensembl	74_37	+1	known	missense	c.261	p.E87D	0.000	NULL	pfam_Carbonic_anhydrase_a,superfamily_Carbonic_anhydrase_a,pfscan_Carbonic_anhydrase_a	-	no_errors	CA9	HGNC	ENSG00000107159				36	0	0	57	12	17.3913
ZCCHC7	0	genome.wustl.edu	37	9	37349416	37349416	+	Silent	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	9	37349416	37349416	C	T	SNP	ZCCHC7	ENST00000336755	human	ensembl	74_37	+1	known	silent	c.1050	p.C350	1.000	pfam_Znf_CCHC,superfamily_Znf_CCHC,smart_Znf_CCHC,pfscan_Znf_CCHC	pfam_Znf_CCHC,superfamily_Znf_CCHC,smart_Znf_CCHC,pfscan_Znf_CCHC	-	no_errors	ZCCHC7	HGNC	ENSG00000147905				89	0	0	125	25	16.6667
UHRF2	0	genome.wustl.edu	37	9	6498129	6498129	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	9	6498129	6498129	C	T	SNP	UHRF2	ENST00000276893	human	ensembl	74_37	+1	known	missense	c.1879	p.R627W	1.000	NULL	pfam_SRA_YDG,pfam_DUF3590,pfam_Ubiquitin_dom,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Ubiquitin_dom,smart_Znf_PHD,smart_Znf_RING,smart_SRA_YDG,pfscan_SRA_YDG,pfscan_Znf_PHD-finger,pfscan_Znf_RING,pfscan_Ubiquitin_supergroup	-	no_errors	UHRF2	HGNC	ENSG00000147854				67	0	0	60	19	24.0506
FLJ20444	0	genome.wustl.edu	37	9	66513581	66513581	+	RNA	SNP	G	G	C			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	9	66513581	66513581	G	C	SNP	FLJ20444	ENST00000586625	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	RP11-262H14.3	Clone_based_vega_gene	ENSG00000234665				15	0	0	17	11	39.2857
PGM5	0	genome.wustl.edu	37	9	70993121	70993121	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	9	70993121	70993121	C	T	SNP	PGM5	ENST00000396396	human	ensembl	74_37	+1	known	nonsense	c.268	p.R90*	0.949	pfam_A-D-PHexomutase_a/b/a-I,superfamily_A-D-PHexomutase_a/b/a-I/II/III	pfam_A-D-PHexomutase_a/b/a-I,pfam_A-D-PHexomutase_a/b/a-III,pfam_A-D-PHexomutase_a/b/a-II,superfamily_A-D-PHexomutase_a/b/a-I/II/III,prints_Alpha-D-phosphohexomutase_SF	-	no_errors	PGM5	HGNC	ENSG00000154330				115	0	0	153	12	7.27273
TJP2	0	genome.wustl.edu	37	9	71831355	71831355	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	9	71831355	71831355	G	A	SNP	TJP2	ENST00000539225	human	ensembl	74_37	+1	known	missense	c.308	p.G103D	1.000	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_PDZ,pfam_GK/Ca_channel_bsu,pfam_SH3_2,superfamily_PDZ,superfamily_P-loop_NTPase,superfamily_SH3_domain,smart_PDZ,smart_GK/Ca_channel_bsu,pfscan_PDZ,pfscan_SH3_domain,pfscan_Guanylate_kin-like,prints_ZonOcculS2,prints_ZonOcculdens	-	no_errors	TJP2	HGNC	ENSG00000119139				65	0	0	74	9	10.8434
KANK1	0	genome.wustl.edu	37	9	742244	742244	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	9	742244	742244	C	T	SNP	KANK1	ENST00000382297	human	ensembl	74_37	+1	known	missense	c.3736	p.R1246W	1.000	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_KN_motif,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	KANK1	HGNC	ENSG00000107104				156	0	0	188	28	12.963
TMEM2	0	genome.wustl.edu	37	9	74319544	74319544	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	9	74319544	74319544	C	T	SNP	TMEM2	ENST00000377044	human	ensembl	74_37	-1	known	missense	c.3161	p.R1054Q	0.000	NULL	pfam_G8_domain,superfamily_Pectin_lyase_fold/virulence	-	no_errors	TMEM2	HGNC	ENSG00000135048				115	0	0	135	19	12.3377
ALDH1A1	0	genome.wustl.edu	37	9	75533736	75533736	+	Silent	SNP	A	A	G			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	9	75533736	75533736	A	G	SNP	ALDH1A1	ENST00000297785	human	ensembl	74_37	-1	known	silent	c.750	p.V250	0.998	pfam_Aldehyde_DH_dom,pfam_Acyl-CoA_reduct_LuxC,superfamily_Ald_DH/histidinol_DH	pfam_Aldehyde_DH_dom,pfam_Acyl-CoA_reduct_LuxC,superfamily_Ald_DH/histidinol_DH	-	no_errors	ALDH1A1	HGNC	ENSG00000165092				88	0	0	115	28	19.5804
TRPM6	0	genome.wustl.edu	37	9	77416834	77416834	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	9	77416834	77416834	T	G	SNP	TRPM6	ENST00000451710	human	ensembl	74_37	-1	known	missense	c.1989	p.E663D	1.000	NULL	pfam_MHCK_EF2_kinase,pfam_Ion_trans_dom,superfamily_Kinase-like_dom,smart_MHCK_EF2_kinase,pfscan_MHCK_EF2_kinase	-	no_errors	TRPM6	HGNC	ENSG00000119121				121	0	0	152	37	19.5767
PCSK5	0	genome.wustl.edu	37	9	78506228	78506228	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	9	78506228	78506228	C	A	SNP	PCSK5	ENST00000545128	human	ensembl	74_37	+1	known	missense	c.131	p.A44D	1.000	superfamily_Prot_inh_propept	pfam_Peptidase_S8/S53_dom,pfam_PrprotnconvertsP,superfamily_Peptidase_S8/S53_dom,superfamily_Galactose-bd-like,superfamily_Growth_fac_rcpt_N_dom,superfamily_Prot_inh_propept,smart_Furin_repeat,smart_EG-like_dom,prints_Peptidase_S8_subtilisin-rel	-	no_errors	PCSK5	HGNC	ENSG00000099139				146	0	0	168	31	15.5779
PRUNE2	0	genome.wustl.edu	37	9	79322909	79322909	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	9	79322909	79322909	T	G	SNP	PRUNE2	ENST00000428286	human	ensembl	74_37	-1	known	missense	c.3204	p.K1068N	0.000	NULL	pfam_Bcl2-/adenovirus-E1B,pfam_CRAL-TRIO_dom,superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom	-	no_errors	PRUNE2	HGNC	ENSG00000106772				106	0	0	140	21	13.0435
VPS13A	0	genome.wustl.edu	37	9	79954754	79954754	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	9	79954754	79954754	G	A	SNP	VPS13A	ENST00000360280	human	ensembl	74_37	+1	known	missense	c.6701	p.R2234Q	1.000	pfam_VPSAP_dom	pfam_VPSAP_dom,pfam_Autophagy-rel_C	-	no_errors	VPS13A	HGNC	ENSG00000197969				164	0	0	179	38	17.5115
SPATA31D4	0	genome.wustl.edu	37	9	84547721	84547721	+	RNA	SNP	G	G	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	9	84547721	84547721	G	T	SNP	SPATA31D4	ENST00000341875	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SPATA31D4	HGNC	ENSG00000189357				32	0	0	42	12	22.2222
PTPRD	0	genome.wustl.edu	37	9	8504278	8504278	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	9	8504278	8504278	G	A	SNP	PTPRD	ENST00000356435	human	ensembl	74_37	-1	known	missense	c.1805	p.A602V	0.969	superfamily_Fibronectin_type3,smart_Ig_sub,pfscan_Fibronectin_type3	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Fibronectin_type3,pfam_Ig_I-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like_dom,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRD	HGNC	ENSG00000153707				174	0	0	181	37	16.9725
GAS1	0	genome.wustl.edu	37	9	89561072	89561072	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	9	89561072	89561072	T	C	SNP	GAS1	ENST00000298743	human	ensembl	74_37	-1	known	missense	c.623	p.E208G	1.000	pfam_GDNF/GAS1,smart_GDNF/GAS1	pfam_GDNF/GAS1,smart_GDNF/GAS1	-	no_errors	GAS1	HGNC	ENSG00000180447				36	0	0	48	12	20
PTCH1	0	genome.wustl.edu	37	9	98229519	98229519	+	Silent	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	9	98229519	98229519	C	T	SNP	PTCH1	ENST00000331920	human	ensembl	74_37	-1	known	silent	c.2439	p.P813	0.140	pfam_Patched,tigrfam_TM_rcpt_patched	pfam_Patched,pfscan_SSD,tigrfam_TM_rcpt_patched	-	no_errors	PTCH1	HGNC	ENSG00000185920				260	0	0	258	59	18.612
GPRASP1	0	genome.wustl.edu	37	X	101912464	101912464	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	X	101912464	101912464	C	T	SNP	GPRASP1	ENST00000361600	human	ensembl	74_37	+1	known	missense	c.3623	p.P1208L	0.858	pfam_ARM-rpt_dom,superfamily_ARM-type_fold	pfam_ARM-rpt_dom,superfamily_ARM-type_fold	-	no_errors	GPRASP1	HGNC	ENSG00000198932				192	0	0	205	44	17.6707
PLP1	0	genome.wustl.edu	37	X	103031929	103031929	+	Splice_Site	SNP	T	T	C			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	X	103031929	103031929	T	C	SNP	PLP1	ENST00000303958	human	ensembl	74_37	+1	known	splice_site	c.4+2	e1+2	1.000	-	-	-	no_errors	PLP1	HGNC	ENSG00000123560				44	0	0	51	8	13.5593
PRPS1	0	genome.wustl.edu	37	X	106888486	106888486	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	X	106888486	106888486	C	T	SNP	PRPS1	ENST00000372435	human	ensembl	74_37	+1	known	missense	c.610	p.R204C	1.000	pfam_PRibTrfase_dom,tigrfam_Rib-P_diPkinase	pfam_PRibTrfase_dom,tigrfam_Rib-P_diPkinase	-	no_errors	PRPS1	HGNC	ENSG00000147224				440	0	0	457	91	16.6058
IRS4	0	genome.wustl.edu	37	X	107978366	107978366	+	Silent	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	X	107978366	107978366	G	A	SNP	IRS4	ENST00000372129	human	ensembl	74_37	-1	known	silent	c.1209	p.S403	0.006	NULL	pfam_Insln_rcpt_S1,smart_Pleckstrin_homology,smart_Insln_rcpt_S1,pfscan_Pleckstrin_homology,pfscan_Insln_rcpt_S1,prints_Insln_rcpt_S1	-	no_errors	IRS4	HGNC	ENSG00000133124				133	0	0	162	45	21.7391
RGAG1	0	genome.wustl.edu	37	X	109697463	109697463	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	X	109697463	109697463	G	T	SNP	RGAG1	ENST00000465301	human	ensembl	74_37	+1	known	missense	c.3618	p.E1206D	1.000	NULL	NULL	-	no_errors	RGAG1	HGNC	ENSG00000243978				180	0	0	203	51	20.0787
AMOT	0	genome.wustl.edu	37	X	112054602	112054602	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	X	112054602	112054602	C	T	SNP	AMOT	ENST00000371959	human	ensembl	74_37	-1	known	missense	c.1412	p.R471H	0.998	superfamily_Prefoldin	pfam_Angiomotin_C,superfamily_Prefoldin,prints_Angiomotin	-	no_errors	AMOT	HGNC	ENSG00000126016				250	1	0.398406	232	73	23.9344
SLC25A5	0	genome.wustl.edu	37	X	118602438	118602438	+	RNA	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	X	118602438	118602438	G	A	SNP	SLC25A5	ENST00000475354	human	ensembl	74_37	+1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	SLC25A5	HGNC	ENSG00000005022				17	0	0	19	8	29.6296
TENM1	0	genome.wustl.edu	37	X	123518248	123518248	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	X	123518248	123518248	C	T	SNP	TENM1	ENST00000422452	human	ensembl	74_37	-1	known	missense	c.6533	p.R2178H	1.000	tigrfam_YD	pfam_Ten_N,pfam_EGF_extracell,superfamily_CarboxyPept-like_regulatory,smart_EG-like_dom,pfscan_EG-like_dom,tigrfam_YD	-	no_errors	TENM1	HGNC	ENSG00000009694				178	0	0	210	43	16.996
TENM1	0	genome.wustl.edu	37	X	123556221	123556221	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	X	123556221	123556221	G	A	SNP	TENM1	ENST00000422452	human	ensembl	74_37	-1	known	missense	c.4372	p.R1458C	1.000	NULL	pfam_Ten_N,pfam_EGF_extracell,superfamily_CarboxyPept-like_regulatory,smart_EG-like_dom,pfscan_EG-like_dom,tigrfam_YD	-	no_errors	TENM1	HGNC	ENSG00000009694				242	1	0.411523	244	56	18.6667
MAP7D3	0	genome.wustl.edu	37	X	135314317	135314317	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	X	135314317	135314317	C	T	SNP	MAP7D3	ENST00000370663	human	ensembl	74_37	-1	known	missense	c.745	p.D249N	0.010	NULL	pfam_MAP7	-	no_errors	MAP7D3	HGNC	ENSG00000129680				323	0	0	339	77	18.5096
RBMX	0	genome.wustl.edu	37	X	135961490	135961490	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	X	135961490	135961490	G	A	SNP	RBMX	ENST00000320676	human	ensembl	74_37	-1	known	nonsense	c.97	p.R33*	1.000	pfam_RRM_dom,smart_RRM_dom_euk,smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,pfam_RBM1CTR,smart_RRM_dom_euk,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBMX	HGNC	ENSG00000147274				272	0	0	300	58	16.2011
ZIC3	0	genome.wustl.edu	37	X	136649750	136649750	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	X	136649750	136649750	G	T	SNP	ZIC3	ENST00000287538	human	ensembl	74_37	+1	known	missense	c.900	p.E300D	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZIC3	HGNC	ENSG00000156925				186	0	0	221	31	12.3016
ZIC3	0	genome.wustl.edu	37	X	136651058	136651058	+	RNA	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	X	136651058	136651058	C	T	SNP	ZIC3	ENST00000478471	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	ZIC3	HGNC	ENSG00000156925				501	0	0	530	119	18.3359
SOX3	0	genome.wustl.edu	37	X	139586578	139586578	+	Silent	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	X	139586578	139586578	C	T	SNP	SOX3	ENST00000370536	human	ensembl	74_37	-1	known	silent	c.648	p.T216	0.999	pfam_TF_SOX	pfam_HMG_box_dom,pfam_TF_SOX,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	-	no_errors	SOX3	HGNC	ENSG00000134595				58	0	0	82	18	18
GPR50	0	genome.wustl.edu	37	X	150348463	150348463	+	Silent	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	X	150348463	150348463	C	T	SNP	GPR50	ENST00000218316	human	ensembl	74_37	+1	known	silent	c.408	p.Y136	0.918	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_Melatonin_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_Mel_rcpt_1X,prints_GPCR_Rhodpsn,prints_Melatonin_rcpt,prints_NPY_rcpt	-	no_errors	GPR50	HGNC	ENSG00000102195				196	0	0	206	47	18.5771
ABCD1	0	genome.wustl.edu	37	X	153001646	153001646	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	X	153001646	153001646	G	A	SNP	ABCD1	ENST00000218104	human	ensembl	74_37	+1	known	missense	c.1162	p.A388T	1.000	superfamily_ABC1_TM_dom,tigrfam_FA_transporter	pfam_ABC_Peroxi_TM,pfam_ABC_transporter-like,superfamily_P-loop_NTPase,superfamily_ABC1_TM_dom,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom,tigrfam_FA_transporter	-	no_errors	ABCD1	HGNC	ENSG00000101986				160	0	0	224	34	13.1783
SSR4	0	genome.wustl.edu	37	X	153063827	153063827	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	X	153063827	153063827	C	T	SNP	SSR4	ENST00000320857	human	ensembl	74_37	+1	known	missense	c.461	p.A154V	0.084	pfam_TRAP-delta	pfam_TRAP-delta	-	no_errors	SSR4	HGNC	ENSG00000180879				19	0	0	27	6	18.1818
L1CAM	0	genome.wustl.edu	37	X	153130652	153130652	+	Silent	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	X	153130652	153130652	G	A	SNP	L1CAM	ENST00000543994	human	ensembl	74_37	-1	known	silent	c.2769	p.P923	0.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	L1CAM	HGNC	ENSG00000198910				31	0	0	46	9	16.3636
PLXNA3	0	genome.wustl.edu	37	X	153689697	153689697	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	X	153689697	153689697	C	T	SNP	PLXNA3	ENST00000369682	human	ensembl	74_37	+1	known	missense	c.853	p.R285C	0.998	pfam_Semap_dom,superfamily_Semap_dom,smart_Semap_dom,pfscan_Semap_dom	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_Semap_dom,pfam_IPT,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_IPT,pfscan_Semap_dom	-	no_errors	PLXNA3	HGNC	ENSG00000130827				148	0	0	152	32	17.3913
CNKSR2	0	genome.wustl.edu	37	X	21545078	21545078	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	X	21545078	21545078	C	T	SNP	CNKSR2	ENST00000379510	human	ensembl	74_37	+1	known	missense	c.1051	p.L351F	1.000	pfam_CNKSR2	pfam_CNKSR2,pfam_CRIC_domain_Chordata,pfam_SAM_type1,pfam_Pleckstrin_homology,pfam_SAM_2,pfam_PDZ,superfamily_SAM/pointed,superfamily_PDZ,smart_SAM,smart_PDZ,smart_Pleckstrin_homology,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_SAM	-	no_errors	CNKSR2	HGNC	ENSG00000149970				646	0	0	655	171	20.7022
ZBED1	0	genome.wustl.edu	37	X	2406919	2406919	+	Silent	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	X	2406919	2406919	C	T	SNP	ZBED1	ENST00000381218	human	ensembl	74_37	-1	known	silent	c.1842	p.T614	0.722	pfam_HATC_dom_C,superfamily_RNaseH-like_dom	pfam_HATC_dom_C,pfam_Znf_BED_prd,superfamily_RNaseH-like_dom,smart_Znf_BED_prd,pfscan_Znf_BED_prd	-	no_errors	ZBED1	HGNC	ENSG00000214717				224	0	0	290	65	18.3099
EIF2S3	0	genome.wustl.edu	37	X	24086182	24086182	+	Silent	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	X	24086182	24086182	G	A	SNP	EIF2S3	ENST00000253039	human	ensembl	74_37	+1	known	silent	c.969	p.A323	0.001	pfam_Transl_elong_EFTu/EF1A_2,superfamily_Transl_B-barrel	pfam_EF_GTP-bd_dom,pfam_TIF2_gsu_C,pfam_Transl_elong_EFTu/EF1A_2,superfamily_P-loop_NTPase,superfamily_Transl_B-barrel,superfamily_Transl_elong_EF1A/Init_IF2_C,prints_EF_GTP-bd_dom	-	no_errors	EIF2S3	HGNC	ENSG00000130741				135	0	0	136	39	22.2857
ARSE	0	genome.wustl.edu	37	X	2873550	2873550	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	X	2873550	2873550	C	T	SNP	ARSE	ENST00000545496	human	ensembl	74_37	-1	known	missense	c.289	p.D97N	0.835	pfam_Sulfatase,superfamily_Alkaline_phosphatase_core	pfam_Sulfatase,pfam_Phosphodiest/P_Trfase,superfamily_Alkaline_phosphatase_core	-	no_errors	ARSE	HGNC	ENSG00000157399				36	0	0	54	9	14.2857
MAGEB2	0	genome.wustl.edu	37	X	30236810	30236810	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	X	30236810	30236810	C	A	SNP	MAGEB2	ENST00000378988	human	ensembl	74_37	+1	known	missense	c.113	p.A38D	0.001	pfam_Melanoma_ass_antigen_N	pfam_MAGE,pfam_Melanoma_ass_antigen_N,pfscan_MAGE	-	no_errors	MAGEB2	HGNC	ENSG00000099399				25	0	0	35	16	31.3725
MXRA5	0	genome.wustl.edu	37	X	3248157	3248157	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	X	3248157	3248157	C	T	SNP	MXRA5	ENST00000217939	human	ensembl	74_37	-1	known	missense	c.611	p.R204Q	0.000	smart_Leu-rich_rpt_typical-subtyp	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	MXRA5	HGNC	ENSG00000101825				36	0	0	52	14	21.2121
MXRA5	0	genome.wustl.edu	37	X	3261860	3261860	+	Silent	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	X	3261860	3261860	C	T	SNP	MXRA5	ENST00000217939	human	ensembl	74_37	-1	known	silent	c.15	p.A5	0.000	NULL	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	MXRA5	HGNC	ENSG00000101825				43	0	0	55	9	14.0625
XK	0	genome.wustl.edu	37	X	37545411	37545411	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	X	37545411	37545411	G	A	SNP	XK	ENST00000378616	human	ensembl	74_37	+1	known	missense	c.197	p.R66H	0.996	pfam_Transport_prot_XK	pfam_Transport_prot_XK	-	no_errors	XK	HGNC	ENSG00000047597				15	0	0	25	5	16.6667
TSPAN7	0	genome.wustl.edu	37	X	38540530	38540530	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	X	38540530	38540530	G	A	SNP	TSPAN7	ENST00000422612	human	ensembl	74_37	+1	known	missense	c.748	p.A250T	0.991	pfam_Tetraspanin/Peripherin,prints_Tetraspanin	pfam_Tetraspanin/Peripherin,superfamily_Tetraspanin_EC2,prints_Tetraspanin	-	no_errors	TSPAN7	HGNC	ENSG00000156298				175	0	0	169	45	21.028
DUSP21	0	genome.wustl.edu	37	X	44703614	44703614	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	X	44703614	44703614	C	T	SNP	DUSP21	ENST00000339042	human	ensembl	74_37	+1	known	missense	c.236	p.S79L	0.114	pfam_Dual-sp_phosphatase_cat-dom,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Dual-sp_phosphatase_subgr_cat	pfam_Dual-sp_phosphatase_cat-dom,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Tyr/Dual-sp_Pase,pfscan_Dual-sp_phosphatase_subgr_cat,prints_Atypical_DUSP_famB,prints_Atypical_DUSP	-	no_errors	DUSP21	HGNC	ENSG00000189037				172	0	0	205	45	18
UBA1	0	genome.wustl.edu	37	X	47061595	47061595	+	Silent	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	X	47061595	47061595	C	T	SNP	UBA1	ENST00000335972	human	ensembl	74_37	+1	known	silent	c.852	p.S284	0.716	superfamily_Molybdenum_cofac_synth_MoeB,tigrfam_UBQ-activ_enz_E1	pfam_ThiF_NAD_FAD-bd,pfam_Ub-activating_enz_e1_C,pfam_UBact_repeat,pfam_Ubiquitin-activating_enzyme,superfamily_Molybdenum_cofac_synth_MoeB,prints_UBQ/SUMO-activ_enz_E1-like,tigrfam_UBQ-activ_enz_E1	-	no_errors	UBA1	HGNC	ENSG00000130985				32	0	0	42	10	19.2308
ZNF157	0	genome.wustl.edu	37	X	47272407	47272407	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	X	47272407	47272407	G	A	SNP	ZNF157	ENST00000377073	human	ensembl	74_37	+1	known	missense	c.935	p.R312H	0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF157	HGNC	ENSG00000147117				43	0	0	37	11	22.9167
SSX6	0	genome.wustl.edu	37	X	47979522	47979522	+	RNA	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	X	47979522	47979522	G	A	SNP	SSX6	ENST00000509958	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	SSX6	HGNC	ENSG00000171483				68	0	0	68	26	27.6596
KDM5C	0	genome.wustl.edu	37	X	53231066	53231066	+	Silent	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	X	53231066	53231066	G	A	SNP	KDM5C	ENST00000375401	human	ensembl	74_37	-1	known	silent	c.1836	p.A612	0.178	pfam_JmjC_dom,smart_JmjC_dom,pfscan_JmjC_dom	pfam_Lys_sp_deMease_like_dom,pfam_JmjC_dom,pfam_ARID/BRIGHT_DNA-bd,pfam_Znf_C5HC2,pfam_Znf_PHD-finger,pfam_TF_JmjN,superfamily_ARID/BRIGHT_DNA-bd,superfamily_Znf_FYVE_PHD,smart_TF_JmjN,smart_ARID/BRIGHT_DNA-bd,smart_Znf_PHD,smart_JmjC_dom,pfscan_TF_JmjN,pfscan_JmjC_dom,pfscan_Znf_PHD-finger,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	KDM5C	HGNC	ENSG00000126012				82	0	0	100	23	18.6992
SMC1A	0	genome.wustl.edu	37	X	53436052	53436052	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	X	53436052	53436052	G	A	SNP	SMC1A	ENST00000322213	human	ensembl	74_37	-1	known	missense	c.1486	p.R496C	1.000	pfam_RecF/RecN/SMC_N,superfamily_P-loop_NTPase,superfamily_SMC_hinge	pfam_RecF/RecN/SMC_N,pfam_SMC_hinge,superfamily_P-loop_NTPase,superfamily_SMC_hinge,smart_SMC_hinge,prints_Tropomyosin	-	no_errors	SMC1A	HGNC	ENSG00000072501				101	0	0	121	37	23.4177
FGD1	0	genome.wustl.edu	37	X	54496509	54496509	+	Silent	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	X	54496509	54496509	C	T	SNP	FGD1	ENST00000375135	human	ensembl	74_37	-1	known	silent	c.1041	p.E347	0.954	NULL	pfam_DH-domain,pfam_Pleckstrin_homology,pfam_Znf_FYVE,superfamily_DH-domain,superfamily_Znf_FYVE_PHD,smart_DH-domain,smart_Pleckstrin_homology,smart_Znf_FYVE,pfscan_Pleckstrin_homology,pfscan_Znf_FYVE-rel,pfscan_DH-domain	-	no_errors	FGD1	HGNC	ENSG00000102302				53	0	0	57	7	10.9375
PAGE3	0	genome.wustl.edu	37	X	55287013	55287013	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	X	55287013	55287013	C	A	SNP	PAGE3	ENST00000374951	human	ensembl	74_37	-1	known	missense	c.273	p.K91N	0.001	pfam_GAGE	pfam_GAGE	-	no_errors	PAGE3	HGNC	ENSG00000204279				51	0	0	55	8	12.6984
ARHGEF9	0	genome.wustl.edu	37	X	62893977	62893977	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	X	62893977	62893977	G	A	SNP	ARHGEF9	ENST00000253401	human	ensembl	74_37	-1	known	nonsense	c.865	p.R289*	0.996	superfamily_DH-domain	pfam_DH-domain,pfam_SH3_2,pfam_SH3_domain,pfam_Pleckstrin_homology,superfamily_DH-domain,superfamily_SH3_domain,smart_SH3_domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_DH-domain	-	no_errors	ARHGEF9	HGNC	ENSG00000131089				82	0	0	87	17	16.3462
TAF1	0	genome.wustl.edu	37	X	70683799	70683799	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	X	70683799	70683799	C	T	SNP	TAF1	ENST00000449580	human	ensembl	74_37	+1	known	missense	c.5624	p.P1875L	0.996	pirsf_TAF1_animal	pirsf_TAF1_animal,pfam_TFIID_sub1_DUF3591,pfam_Bromodomain,pfam_TAF_II_230-bd,superfamily_Bromodomain,superfamily_TAF_II_230-bd,smart_Bromodomain,prints_Bromodomain,pfscan_Bromodomain	-	no_errors	TAF1	HGNC	ENSG00000147133				19	0	0	34	7	17.0732
RGAG4	0	genome.wustl.edu	37	X	71350736	71350736	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	X	71350736	71350736	G	A	SNP	RGAG4	ENST00000479991	human	ensembl	74_37	-1	known	missense	c.655	p.R219C	0.973	pfam_Retrotrans_gag_dom	pfam_Retrotrans_gag_dom	-	no_errors	RGAG4	HGNC	ENSG00000242732				91	0	0	125	24	16.1074
PIN4	0	genome.wustl.edu	37	X	71406238	71406238	+	Silent	SNP	C	C	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	X	71406238	71406238	C	T	SNP	PIN4	ENST00000373662	human	ensembl	74_37	+1	known	silent	c.273	p.S91	0.000	NULL	NULL	-	no_errors	PIN4	HGNC	ENSG00000102309				10	0	0	18	5	21.7391
MAP2K4P1	0	genome.wustl.edu	37	X	72744875	72744875	+	RNA	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	X	72744875	72744875	G	A	SNP	MAP2K4P1	ENST00000602584	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	MAP2K4P1	HGNC	ENSG00000269904				81	0	0	79	16	16.8421
BRWD3	0	genome.wustl.edu	37	X	79951476	79951476	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	X	79951476	79951476	G	A	SNP	BRWD3	ENST00000373275	human	ensembl	74_37	-1	known	missense	c.3082	p.P1028S	1.000	NULL	pfam_WD40_repeat,pfam_Bromodomain,superfamily_Quino_amine_DH_bsu,superfamily_Bromodomain,smart_WD40_repeat,smart_Bromodomain,pfscan_Bromodomain,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Bromodomain	-	no_errors	BRWD3	HGNC	ENSG00000165288				37	0	0	72	12	14.2857
SHROOM2	0	genome.wustl.edu	37	X	9864477	9864477	+	Silent	SNP	G	G	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	X	9864477	9864477	G	T	SNP	SHROOM2	ENST00000380913	human	ensembl	74_37	+1	known	silent	c.2529	p.S843	0.000	NULL	pfam_ASD2,pfam_ASD1,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	SHROOM2	HGNC	ENSG00000146950				46	0	0	60	15	20
FRRS1	0	genome.wustl.edu	37	1	100174665	100174665	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	1	100174665	100174665	A	-	DEL	FRRS1	ENST00000287474	human	ensembl	74_37	-1	known	frame_shift_del	c.1670	p.L557fs	1.000	NULL	pfam_Reeler_dom,pfam_DOMON_domain,smart_DOMON_domain,smart_Cyt_b561/ferric_Rdtase_TM,pfscan_DOMON_domain,pfscan_Reeler_dom,pfscan_Cyt_b561/ferric_Rdtase_TM	-	no_errors	FRRS1	HGNC	ENSG00000156869				118	0	0	113	15	11.7188
CDC14A	0	genome.wustl.edu	37	1	100889837	100889837	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	1	100889837	100889837	C	-	DEL	CDC14A	ENST00000361544	human	ensembl	74_37	+1	known	frame_shift_del	c.369	p.Y126fs	0.021	NULL	pfam_Dual-sp_phosphatase_cat-dom,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Dual-sp_phosphatase_subgr_cat,smart_Tyr_Pase_cat,pfscan_Tyr/Dual-sp_Pase,pfscan_Dual-sp_phosphatase_subgr_cat	-	no_errors	CDC14A	HGNC	ENSG00000079335				150	0	0	159	22	12.1547
PSMA5	0	genome.wustl.edu	37	1	109944523	109944524	+	RNA	INS	-	-	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	1	109944523	109944524	-	A	INS	PSMA5	ENST00000490870	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.089:0.979	-	-	-	no_errors	PSMA5	HGNC	ENSG00000143106				45	0	0	54	14	20.5882
EXOSC10	0	genome.wustl.edu	37	1	11128120	11128120	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	1	11128120	11128120	T	-	DEL	EXOSC10	ENST00000376936	human	ensembl	74_37	-1	known	frame_shift_del	c.2572	p.I858fs	0.002	NULL	pfam_3'-5'_exonuclease_dom,pfam_Exosome-assoc_fac_Rrp6_N,pfam_HRDC_dom,superfamily_RNaseH-like_dom,superfamily_HRDC-like,smart_3'-5'_exonuclease_dom,smart_HRDC_dom,pfscan_HRDC_dom	-	no_errors	EXOSC10	HGNC	ENSG00000171824				165	0	0	210	39	15.6627
SYCP1	0	genome.wustl.edu	37	1	115469134	115469134	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	1	115469134	115469134	A	-	DEL	SYCP1	ENST00000369518	human	ensembl	74_37	+1	known	frame_shift_del	c.1876	p.G629fs	1.000	pfam_SCP-1	pfam_SCP-1	-	no_errors	SYCP1	HGNC	ENSG00000198765				19	0	0	24	6	20
SYCP1	0	genome.wustl.edu	37	1	115527420	115527421	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	1	115527420	115527421	-	A	INS	SYCP1	ENST00000369518	human	ensembl	74_37	+1	known	frame_shift_ins	c.2634_2635	p.R881fs	0.008:0.018	NULL	pfam_SCP-1	-	no_errors	SYCP1	HGNC	ENSG00000198765				110	0	0	108	14	11.4754
MXRA8	0	genome.wustl.edu	37	1	1290110	1290110	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	1	1290110	1290110	G	-	DEL	MXRA8	ENST00000445648	human	ensembl	74_37	-1	known	frame_shift_del	c.901	p.R301fs	0.000	NULL	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	-	no_errors	MXRA8	HGNC	ENSG00000162576				11	0	0	32	8	20
NUP210L	0	genome.wustl.edu	37	1	154067526	154067526	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	1	154067526	154067526	A	-	DEL	NUP210L	ENST00000368559	human	ensembl	74_37	-1	known	frame_shift_del	c.2072	p.L691fs	0.995	NULL	pfam_Big_2,superfamily_Invasin/intimin_cell_adhesion,smart_Big_2	-	no_errors	NUP210L	HGNC	ENSG00000143552				71	0	0	84	25	22.9358
OR10Z1	0	genome.wustl.edu	37	1	158576487	158576487	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	1	158576487	158576487	G	-	DEL	OR10Z1	ENST00000361284	human	ensembl	74_37	+1	known	frame_shift_del	c.259	p.D89fs	0.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR10Z1	HGNC	ENSG00000198967				508	0	0	494	55	10.0182
LOC100131825	0	genome.wustl.edu	37	1	159170735	159170735	+	RNA	DEL	C	C	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	1	159170735	159170735	C	-	DEL	LOC100131825	ENST00000415675	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.819	-	-	-	no_errors	CTA-134P22.2	Clone_based_vega_gene	ENSG00000225670				65	0	0	108	15	12.1951
SPEN	0	genome.wustl.edu	37	1	16260214	16260214	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	1	16260214	16260214	C	-	DEL	SPEN	ENST00000375759	human	ensembl	74_37	+1	known	frame_shift_del	c.7479	p.P2495fs	0.001	NULL	pfam_RRM_dom,pfam_SPOC_C,superfamily_SPOC_like_C_dom,smart_RRM_dom,pfscan_SPOC_met,pfscan_RRM_dom	-	no_errors	SPEN	HGNC	ENSG00000065526				173	0	0	231	33	12.5
POU2F1	0	genome.wustl.edu	37	1	167385179	167385181	+	RNA	DEL	AAA	AAA	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	AAA	AAA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	1	167385179	167385181	AAA	-	DEL	POU2F1	ENST00000367865	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.090:0.002:0.000	-	-	-	no_errors	POU2F1	HGNC	ENSG00000143190				17	0	0	21	4	16
NADK	0	genome.wustl.edu	37	1	1687734	1687734	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	1	1687734	1687734	C	-	DEL	NADK	ENST00000344463	human	ensembl	74_37	-1	known	frame_shift_del	c.983	p.G328fs	1.000	pfam_PolyP/ATP_NADK_prd,superfamily_ATP-NAD_kinase_PpnK-typ	pfam_PolyP/ATP_NADK_prd,superfamily_ATP-NAD_kinase_PpnK-typ	-	no_errors	NADK	HGNC	ENSG00000008130				134	0	0	186	20	9.70874
TROVE2	0	genome.wustl.edu	37	1	193053997	193053997	+	RNA	DEL	A	A	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	1	193053997	193053997	A	-	DEL	TROVE2	ENST00000460715	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	TROVE2	HGNC	ENSG00000116747				10	0	0	24	8	25
ENSG00000230260	0	genome.wustl.edu	37	1	197411573	197411573	+	RNA	DEL	A	A	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	1	197411573	197411573	A	-	DEL	ENSG00000230260	ENST00000422250	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	RP11-75C23.1	Clone_based_vega_gene	ENSG00000230260				23	0	0	26	5	16.129
DDX59	0	genome.wustl.edu	37	1	200594042	200594042	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	1	200594042	200594042	T	-	DEL	DDX59	ENST00000447706	human	ensembl	74_37	-1	known	frame_shift_del	c.1730	p.N577fs	0.001	pfscan_Helicase_C	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,pfam_Znf_HIT,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX59	HGNC	ENSG00000118197				86	0	0	119	23	16.1972
CAMSAP2	0	genome.wustl.edu	37	1	200822549	200822549	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	1	200822549	200822549	A	-	DEL	CAMSAP2	ENST00000236925	human	ensembl	74_37	+1	known	frame_shift_del	c.3782	p.K1263fs	0.945	NULL	pfam_CKK_domain,pfam_CAMSAP_CH,pfam_CH-domain,superfamily_PRC_barrel-like,superfamily_CH-domain	-	no_errors	CAMSAP2	HGNC	ENSG00000118200				104	0	0	148	20	11.9048
NFASC	0	genome.wustl.edu	37	1	204924033	204924033	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	1	204924033	204924033	C	-	DEL	NFASC	ENST00000367172	human	ensembl	74_37	+1	known	frame_shift_del	c.489	p.P165fs	1.000	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	NFASC	HGNC	ENSG00000163531				468	1	0.21322	489	76	13.4513
USP48	0	genome.wustl.edu	37	1	22033386	22033387	+	Frame_Shift_Del	DEL	AA	AA	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	1	22033386	22033387	AA	-	DEL	USP48	ENST00000529637	human	ensembl	74_37	-1	novel	frame_shift_del	c.1975_1974	p.S659fs	0.000:0.000	NULL	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67,pfscan_Ubiquitin_supergroup	-	no_errors	USP48	HGNC	ENSG00000090686				67	0	0	59	15	20.2703
DUSP10	0	genome.wustl.edu	37	1	221875662	221875663	+	RNA	DEL	AA	AA	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	1	221875662	221875663	AA	-	DEL	DUSP10	ENST00000468085	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.040:0.067	-	-	-	no_errors	DUSP10	HGNC	ENSG00000143507				77	0	0	91	19	17.2727
TRIM17	0	genome.wustl.edu	37	1	228596779	228596779	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	1	228596779	228596779	C	-	DEL	TRIM17	ENST00000456946	human	ensembl	74_37	-1	known	frame_shift_del	c.977	p.G326fs	0.000	NULL	pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,smart_Znf_RING,smart_Znf_B-box,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM17	HGNC	ENSG00000162931				51	0	0	55	17	23.6111
ABCB10	0	genome.wustl.edu	37	1	229653865	229653865	+	RNA	DEL	T	T	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	1	229653865	229653865	T	-	DEL	ABCB10	ENST00000498158	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	ABCB10	HGNC	ENSG00000135776				16	0	0	32	9	21.9512
KCNK1	0	genome.wustl.edu	37	1	233750103	233750105	+	In_Frame_Del	DEL	CTT	CTT	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	CTT	CTT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	1	233750103	233750105	CTT	-	DEL	KCNK1	ENST00000366621	human	ensembl	74_37	+1	known	in_frame_del	c.186_188	p.F63in_frame_del	1.000:1.000:1.000	pirsf_2pore_dom_K_chnl_TASK,prints_2pore_dom_K_chnl_TWIK1	pfam_2pore_dom_K_chnl_dom,pirsf_2pore_dom_K_chnl_TASK,prints_2pore_dom_K_chnl_TWIK1,prints_2pore_dom_K_chnl_TWIK,prints_2pore_dom_K_chnl	-	no_errors	KCNK1	HGNC	ENSG00000135750				22	0	0	36	4	10
KIF26B	0	genome.wustl.edu	37	1	245849479	245849479	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	1	245849479	245849479	C	-	DEL	KIF26B	ENST00000407071	human	ensembl	74_37	+1	known	frame_shift_del	c.3194	p.R1067fs	1.000	NULL	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF26B	HGNC	ENSG00000162849				59	0	0	81	18	18.1818
OR6F1	0	genome.wustl.edu	37	1	247875544	247875544	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	1	247875544	247875544	G	-	DEL	OR6F1	ENST00000302084	human	ensembl	74_37	-1	known	frame_shift_del	c.514	p.R172fs	0.001	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR6F1	HGNC	ENSG00000169214				165	0	0	179	40	18.2648
TMEM57	0	genome.wustl.edu	37	1	25775375	25775375	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	1	25775375	25775375	T	-	DEL	TMEM57	ENST00000374343	human	ensembl	74_37	+1	known	frame_shift_del	c.299	p.F102fs	1.000	pfam_Macoilin	pfam_Macoilin,superfamily_Prefoldin	-	no_errors	TMEM57	HGNC	ENSG00000204178				118	0	0	135	26	16.1491
UBXN11	0	genome.wustl.edu	37	1	26608878	26608883	+	In_Frame_Del	DEL	CCGGGA	CCGGGA	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	CCGGGA	CCGGGA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	1	26608878	26608883	CCGGGA	-	DEL	UBXN11	ENST00000374221	human	ensembl	74_37	-1	known	in_frame_del	c.1475_1470	p.GP492in_frame_del	0.007:0.000:0.001:0.000:0.000:0.000	NULL	pfam_SEP_domain,superfamily_SEP_domain,pfscan_UBX	-	no_errors	UBXN11	HGNC	ENSG00000158062				191	0	0	218	20	8.40336
ARID1A	0	genome.wustl.edu	37	1	27101268	27101268	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	1	27101268	27101268	C	-	DEL	ARID1A	ENST00000324856	human	ensembl	74_37	+1	known	frame_shift_del	c.4550	p.Q1519fs	1.000	NULL	pfam_DUF3518,pfam_ARID/BRIGHT_DNA-bd,superfamily_ARID/BRIGHT_DNA-bd,superfamily_ARM-type_fold,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID1A	HGNC	ENSG00000117713				158	0	0	210	33	13.5802
WDTC1	0	genome.wustl.edu	37	1	27621108	27621108	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	1	27621108	27621108	G	-	DEL	WDTC1	ENST00000319394	human	ensembl	74_37	+1	known	frame_shift_del	c.861	p.E290fs	1.000	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,smart_TPR_repeat,pfscan_TPR-contain_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDTC1	HGNC	ENSG00000142784				55	0	0	68	8	10.5263
SYTL1	0	genome.wustl.edu	37	1	27680355	27680356	+	RNA	DEL	CT	CT	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	CT	CT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	1	27680355	27680356	CT	-	DEL	SYTL1	ENST00000490170	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	SYTL1	HGNC	ENSG00000142765				88	0	0	112	9	7.43802
PTP4A2	0	genome.wustl.edu	37	1	32384717	32384717	+	RNA	DEL	A	A	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	1	32384717	32384717	A	-	DEL	PTP4A2	ENST00000532289	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	PTP4A2	HGNC	ENSG00000184007				19	0	0	28	9	24.3243
ZBTB8OS	0	genome.wustl.edu	37	1	33087451	33087451	+	RNA	DEL	T	T	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	1	33087451	33087451	T	-	DEL	ZBTB8OS	ENST00000373506	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.005	-	-	-	no_errors	ZBTB8OS	HGNC	ENSG00000176261				117	0	0	98	26	20.9677
MAP7D1	0	genome.wustl.edu	37	1	36636626	36636626	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	1	36636626	36636626	C	-	DEL	MAP7D1	ENST00000373151	human	ensembl	74_37	+1	known	frame_shift_del	c.101	p.P36fs	0.090	NULL	pfam_MAP7	-	no_errors	MAP7D1	HGNC	ENSG00000116871				181	0	0	241	31	11.3971
EPHA10	0	genome.wustl.edu	37	1	38185238	38185238	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	1	38185238	38185238	G	-	DEL	EPHA10	ENST00000427468	human	ensembl	74_37	-1	known	frame_shift_del	c.2604	p.R869fs	0.983	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_SAM/pointed,superfamily_Fibronectin_type3,superfamily_Growth_fac_rcpt_N_dom,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_dom	-	no_errors	EPHA10	HGNC	ENSG00000183317				93	0	0	97	19	16.3793
BEND5	0	genome.wustl.edu	37	1	49201967	49201967	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	1	49201967	49201967	T	-	DEL	BEND5	ENST00000371833	human	ensembl	74_37	-1	known	frame_shift_del	c.1052	p.K351fs	1.000	pfam_BEN_domain	pfam_BEN_domain	-	no_errors	BEND5	HGNC	ENSG00000162373				265	1	0.37594	278	59	17.5074
DMRTB1	0	genome.wustl.edu	37	1	53930351	53930353	+	In_Frame_Del	DEL	GCC	GCC	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	GCC	GCC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	1	53930351	53930353	GCC	-	DEL	DMRTB1	ENST00000371445	human	ensembl	74_37	+1	known	in_frame_del	c.792_794	p.P268in_frame_del	0.001:0.809:0.780	NULL	pfam_DM_DNA-bd,superfamily_DM_DNA-bd,smart_DM_DNA-bd,pfscan_DM_DNA-bd	-	no_errors	DMRTB1	HGNC	ENSG00000143006				47	0	0	57	7	10.9375
RPL22	0	genome.wustl.edu	37	1	6257785	6257785	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	1	6257785	6257785	T	-	DEL	RPL22	ENST00000234875	human	ensembl	74_37	-1	known	frame_shift_del	c.44	p.K15fs	1.000	pfam_Ribosomal_L22e	pfam_Ribosomal_L22e	-	no_errors	RPL22	HGNC	ENSG00000116251				79	0	0	101	12	10.6195
JAK1	0	genome.wustl.edu	37	1	65339111	65339111	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	1	65339111	65339111	T	-	DEL	JAK1	ENST00000342505	human	ensembl	74_37	-1	known	frame_shift_del	c.425	p.K142fs	1.000	pirsf_Tyr_kinase_non-rcpt_Jak/Tyk2,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain	pirsf_Tyr_kinase_non-rcpt_Jak/Tyk2,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,superfamily_FERM_central,smart_Band_41_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Tyr_kinase_non-rcpt_Jak/Tyk2,prints_Tyr_kinase_non-rcpt_Jak1,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_FERM_domain,pfscan_SH2,pfscan_Prot_kinase_dom	-	no_errors	JAK1	HGNC	ENSG00000162434				91	0	0	101	23	18.5484
MIER1	0	genome.wustl.edu	37	1	67442326	67442326	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	1	67442326	67442326	A	-	DEL	MIER1	ENST00000401041	human	ensembl	74_37	+1	known	frame_shift_del	c.1150	p.K385fs	1.000	superfamily_Homeodomain-like,smart_SANT/Myb	pfam_ELM2_dom,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_ELM2_dom	-	no_errors	MIER1	HGNC	ENSG00000198160				129	1	0.769231	149	27	15.3409
CTBS	0	genome.wustl.edu	37	1	85020568	85020568	+	RNA	DEL	T	T	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	1	85020568	85020568	T	-	DEL	CTBS	ENST00000477677	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	CTBS	HGNC	ENSG00000117151				21	0	0	26	8	23.5294
PKN2	0	genome.wustl.edu	37	1	89206848	89206848	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	1	89206848	89206848	A	-	DEL	PKN2	ENST00000370521	human	ensembl	74_37	+1	known	frame_shift_del	c.226	p.S78fs	1.000	pfam_HR1_rho-bd,superfamily_HR1_rho-bd,smart_HR1_rho-bd	pfam_Prot_kinase_dom,pfam_HR1_rho-bd,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_HR1_rho-bd,superfamily_C2_dom,smart_HR1_rho-bd,smart_C2_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_Prot_kinase_dom	-	no_errors	PKN2	HGNC	ENSG00000065243				40	0	0	61	11	15.2778
ZNF644	0	genome.wustl.edu	37	1	91382293	91382293	+	RNA	DEL	A	A	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	1	91382293	91382293	A	-	DEL	ZNF644	ENST00000467231	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	ZNF644	HGNC	ENSG00000122482				37	0	0	35	8	18.6047
IKZF5	0	genome.wustl.edu	37	10	124758127	124758127	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	10	124758127	124758127	T	-	DEL	IKZF5	ENST00000368886	human	ensembl	74_37	-1	known	frame_shift_del	c.15	p.K5fs	0.996	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	IKZF5	HGNC	ENSG00000095574				129	0	0	148	35	19.1257
CPXM2	0	genome.wustl.edu	37	10	125528209	125528209	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	10	125528209	125528209	C	-	DEL	CPXM2	ENST00000241305	human	ensembl	74_37	-1	known	frame_shift_del	c.1132	p.A378fs	0.987	pfam_Peptidase_M14,prints_Peptidase_M14	pfam_Peptidase_M14,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,superfamily_CarboxyPept-like_regulatory,smart_Coagulation_fac_5/8-C_type_dom,smart_Peptidase_M14,pfscan_Coagulation_fac_5/8-C_type_dom,prints_Peptidase_M14	-	no_errors	CPXM2	HGNC	ENSG00000121898				185	0	0	288	29	9.14826
OAT	0	genome.wustl.edu	37	10	126091634	126091634	+	RNA	DEL	A	A	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	10	126091634	126091634	A	-	DEL	OAT	ENST00000471127	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	OAT	HGNC	ENSG00000065154				162	1	0.613497	222	34	13.2812
ANK3	0	genome.wustl.edu	37	10	61831290	61831290	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	10	61831290	61831290	T	-	DEL	ANK3	ENST00000280772	human	ensembl	74_37	-1	known	frame_shift_del	c.9349	p.I3117fs	1.000	NULL	pfam_Ankyrin_rpt,pfam_ZU5,pfam_Death_domain,superfamily_Ankyrin_rpt-contain_dom,superfamily_DEATH-like_dom,smart_Ankyrin_rpt,smart_ZU5,smart_Death_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Death_domain,pfscan_ZU5,prints_Ankyrin_rpt	-	no_errors	ANK3	HGNC	ENSG00000151150				401	0	0	433	69	13.745
MYPN	0	genome.wustl.edu	37	10	69935180	69935180	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	10	69935180	69935180	A	-	DEL	MYPN	ENST00000358913	human	ensembl	74_37	+1	known	frame_shift_del	c.2665	p.I891fs	1.000	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	MYPN	HGNC	ENSG00000138347				142	0	0	149	25	14.3678
TET1	0	genome.wustl.edu	37	10	70332153	70332153	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	10	70332153	70332153	A	-	DEL	TET1	ENST00000373644	human	ensembl	74_37	+1	known	frame_shift_del	c.58	p.K22fs	0.855	NULL	pfam_Znf_CXXC,pfscan_Znf_CXXC	-	no_errors	TET1	HGNC	ENSG00000138336				66	0	0	59	17	22.3684
TET1	0	genome.wustl.edu	37	10	70451314	70451314	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	10	70451314	70451314	A	-	DEL	TET1	ENST00000373644	human	ensembl	74_37	+1	known	frame_shift_del	c.6154	p.N2053fs	1.000	NULL	pfam_Znf_CXXC,pfscan_Znf_CXXC	-	no_errors	TET1	HGNC	ENSG00000138336				118	1	0.840336	158	13	7.60234
PLAU	0	genome.wustl.edu	37	10	75673437	75673438	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	10	75673437	75673438	-	G	INS	PLAU	ENST00000372764	human	ensembl	74_37	+1	known	frame_shift_ins	c.601_602	p.S204fs	0.156:0.201	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1	pfam_Peptidase_S1,pfam_Kringle,superfamily_Trypsin-like_Pept_dom,superfamily_Kringle-like,smart_Kringle,smart_Peptidase_S1,pfscan_EG-like_dom,pfscan_Kringle,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	PLAU	HGNC	ENSG00000122861				210	0	0	263	25	8.68056
KCNMA1	0	genome.wustl.edu	37	10	78729786	78729786	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	10	78729786	78729786	T	-	DEL	KCNMA1	ENST00000406533	human	ensembl	74_37	-1	known	frame_shift_del	c.2318	p.K773fs	1.000	prints_K_chnl_Ca-activ_BK_asu	pfam_K_chnl_Ca-activ_BK_asu,pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom,pfam_RCK_N,prints_K_chnl_Ca-activ_BK_asu,prints_K_chnl	-	no_errors	KCNMA1	HGNC	ENSG00000156113				97	0	0	86	20	18.8679
GATA3	0	genome.wustl.edu	37	10	8100727	8100728	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	10	8100727	8100728	-	C	INS	GATA3	ENST00000379328	human	ensembl	74_37	+1	known	frame_shift_ins	c.701_702	p.S237fs	1.000:1.000	pirsf_TF_GATA-1/2/3	pfam_Znf_GATA,smart_Znf_GATA,pirsf_TF_GATA-1/2/3,pfscan_Znf_GATA,prints_Znf_GATA	-	no_errors	GATA3	HGNC	ENSG00000107485				104	0	0	147	11	6.96203
LARP4B	0	genome.wustl.edu	37	10	890939	890939	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	10	890939	890939	T	-	DEL	LARP4B	ENST00000316157	human	ensembl	74_37	-1	known	frame_shift_del	c.487	p.T163fs	1.000	pfam_Lupus_La_RNA-bd,smart_Lupus_La_RNA-bd,pfscan_Lupus_La_RNA-bd	pfam_Lupus_La_RNA-bd,smart_Lupus_La_RNA-bd,pfscan_Lupus_La_RNA-bd	-	no_errors	LARP4B	HGNC	ENSG00000107929				141	1	0.704225	166	28	14.433
TNKS2	0	genome.wustl.edu	37	10	93601946	93601946	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	10	93601946	93601946	A	-	DEL	TNKS2	ENST00000371627	human	ensembl	74_37	+1	known	frame_shift_del	c.1857	p.N622fs	0.997	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_Poly(ADP-ribose)pol_cat_dom,pfam_SAM_2,pfam_SAM_type1,superfamily_Ankyrin_rpt-contain_dom,superfamily_SAM/pointed,smart_Ankyrin_rpt,smart_SAM,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SAM,pfscan_Poly(ADP-ribose)pol_cat_dom,prints_Ankyrin_rpt	-	no_errors	TNKS2	HGNC	ENSG00000107854				67	0	0	83	20	19.4175
CWF19L2	0	genome.wustl.edu	37	11	107299560	107299560	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	11	107299560	107299560	T	-	DEL	CWF19L2	ENST00000282251	human	ensembl	74_37	-1	known	frame_shift_del	c.1398	p.E467fs	0.186	NULL	pfam_Cwf19-like_C_dom-1,pfam_Cwf19-like_C_dom-2,superfamily_HIT-like	-	no_errors	CWF19L2	HGNC	ENSG00000152404				395	0	0	373	65	14.8402
ATM	0	genome.wustl.edu	37	11	108117774	108117778	+	Frame_Shift_Del	DEL	AGAGG	AGAGG	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	AGAGG	AGAGG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	11	108117774	108117778	AGAGG	-	DEL	ATM	ENST00000278616	human	ensembl	74_37	+1	known	frame_shift_del	c.985_989	p.R329fs	0.998:1.000:1.000:1.000:1.000	superfamily_ARM-type_fold	pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,pfam_TAN,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	ATM	HGNC	ENSG00000149311				63	0	0	68	8	10.5263
DDX6	0	genome.wustl.edu	37	11	118629613	118629614	+	Splice_Site	INS	-	-	G			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	11	118629613	118629614	-	G	INS	DDX6	ENST00000264018	human	ensembl	74_37	-1	known	splice_site_ins	c.865-3_865-2	e8-2	1.000:0.856	-	-	-	no_errors	DDX6	HGNC	ENSG00000110367				165	1	0.60241	219	39	15.1163
BCL9L	0	genome.wustl.edu	37	11	118770651	118770652	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	11	118770651	118770652	-	G	INS	BCL9L	ENST00000334801	human	ensembl	74_37	-1	known	frame_shift_ins	c.3381_3380	p.P1128fs	0.988:0.996	NULL	pfam_BCL9_beta-catenin-bd_dom	-	no_errors	BCL9L	HGNC	ENSG00000186174				49	0	0	59	14	19.1781
DPAGT1	0	genome.wustl.edu	37	11	118969143	118969143	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	11	118969143	118969143	A	-	DEL	DPAGT1	ENST00000354202	human	ensembl	74_37	-1	known	frame_shift_del	c.698	p.F233fs	1.000	pfam_Glycosyl_transferase_4	pfam_Glycosyl_transferase_4	-	no_errors	DPAGT1	HGNC	ENSG00000172269				178	0	0	234	49	17.3145
ARHGEF12	0	genome.wustl.edu	37	11	120308057	120308057	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	11	120308057	120308057	A	-	DEL	ARHGEF12	ENST00000356641	human	ensembl	74_37	+1	known	frame_shift_del	c.908	p.N304fs	1.000	NULL	pfam_RGS-like_dom,pfam_DH-domain,pfam_PDZ,superfamily_Regulat_G_prot_signal_superfam,superfamily_DH-domain,superfamily_PDZ,smart_PDZ,smart_DH-domain,smart_Pleckstrin_homology,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	ARHGEF12	HGNC	ENSG00000196914				112	1	0.884956	109	24	18.0451
IGSF9B	0	genome.wustl.edu	37	11	133807827	133807827	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	11	133807827	133807827	G	-	DEL	IGSF9B	ENST00000321016	human	ensembl	74_37	-1	known	frame_shift_del	c.439	p.Q147fs	1.000	pfam_Ig_I-set,smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	IGSF9B	HGNC	ENSG00000080854				31	0	0	31	6	16.2162
KRTAP5-1	0	genome.wustl.edu	37	11	1606222	1606223	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	11	1606222	1606223	-	T	INS	KRTAP5-1	ENST00000382171	human	ensembl	74_37	-1	known	frame_shift_ins	c.258_257	p.C89fs	0.410:0.397	NULL	NULL	-	no_errors	KRTAP5-1	HGNC	ENSG00000205869				185	0	0	298	19	5.99369
SOX6	0	genome.wustl.edu	37	11	16208405	16208407	+	In_Frame_Del	DEL	TCA	TCA	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	TCA	TCA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	11	16208405	16208407	TCA	-	DEL	SOX6	ENST00000352083	human	ensembl	74_37	-1	known	in_frame_del	c.632_630	p.D210in_frame_del	1.000:1.000:0.990	NULL	pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	-	no_errors	SOX6	HGNC	ENSG00000110693				338	0	0	440	35	7.36842
TPH1	0	genome.wustl.edu	37	11	18057575	18057576	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	11	18057575	18057576	-	A	INS	TPH1	ENST00000341556	human	ensembl	74_37	-1	known	frame_shift_ins	c.232_231	p.H77fs	1.000:1.000	pirsf_Tyrosine_3-monooxygenase-like,tigrfam_Trp_5_mOase	pfam_Aromatic-AA_hydroxylase_C,pfam_ACT_dom,superfamily_Aromatic-AA_hydroxylase_C,pirsf_Tyrosine_3-monooxygenase-like,prints_Aromatic-AA_hydroxylase_C,tigrfam_Trp_5_mOase	-	no_errors	TPH1	HGNC	ENSG00000129167				60	0	0	72	14	16.2791
OR51E2	0	genome.wustl.edu	37	11	4703475	4703475	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	11	4703475	4703475	A	-	DEL	OR51E2	ENST00000396950	human	ensembl	74_37	-1	known	frame_shift_del	c.467	p.F156fs	0.027	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR51E2	HGNC	ENSG00000167332				89	0	0	131	9	6.42857
TRIM51HP	0	genome.wustl.edu	37	11	55065032	55065032	+	RNA	DEL	T	T	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	11	55065032	55065032	T	-	DEL	TRIM51HP	ENST00000526016	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.010	-	-	-	no_errors	TRIM51HP	HGNC	ENSG00000166007				72	0	0	76	31	28.972
GLYAT	0	genome.wustl.edu	37	11	58477306	58477307	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	11	58477306	58477307	-	T	INS	GLYAT	ENST00000344743	human	ensembl	74_37	-1	known	frame_shift_ins	c.824_823	p.M275fs	0.000:0.000	pfam_Glycine_N-acyltransferase_C,superfamily_Acyl_CoA_acyltransferase	pfam_Glycine_N-acyltransferase_N,pfam_Glycine_N-acyltransferase_C,superfamily_Acyl_CoA_acyltransferase	-	no_errors	GLYAT	HGNC	ENSG00000149124				137	0	0	181	20	9.95025
MARK2	0	genome.wustl.edu	37	11	63672263	63672263	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	11	63672263	63672263	C	-	DEL	MARK2	ENST00000402010	human	ensembl	74_37	+1	known	frame_shift_del	c.1682	p.Q563fs	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_KA1_dom,superfamily_Kinase-like_dom,superfamily_KA1/Ssp2_C,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	MARK2	HGNC	ENSG00000072518				179	0	0	207	33	13.75
MALAT1	0	genome.wustl.edu	37	11	65265772	65265773	+	RNA	INS	-	-	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	11	65265772	65265773	-	A	INS	MALAT1	ENST00000534336	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	MALAT1	HGNC	ENSG00000251562				47	0	0	53	11	17.1875
MALAT1	0	genome.wustl.edu	37	11	65271960	65271960	+	RNA	DEL	A	A	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	11	65271960	65271960	A	-	DEL	MALAT1	ENST00000534336	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.991	-	-	-	no_errors	MALAT1	HGNC	ENSG00000251562				77	0	0	52	15	22.3881
MALAT1	0	genome.wustl.edu	37	11	65272638	65272639	+	RNA	INS	-	-	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	11	65272638	65272639	-	T	INS	MALAT1	ENST00000534336	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000:1.000	-	-	-	no_errors	MALAT1	HGNC	ENSG00000251562				84	0	0	101	16	13.6752
LTBP3	0	genome.wustl.edu	37	11	65314283	65314283	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	11	65314283	65314283	C	-	DEL	LTBP3	ENST00000301873	human	ensembl	74_37	-1	known	frame_shift_del	c.2216	p.G739fs	1.000	pfam_EGF-like_Ca-bd_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom	pfam_EGF-like_Ca-bd_dom,pfam_TB_dom,superfamily_TB_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom	-	no_errors	LTBP3	HGNC	ENSG00000168056				81	0	0	76	20	20.8333
SF3B2	0	genome.wustl.edu	37	11	65836146	65836146	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	11	65836146	65836146	A	-	DEL	SF3B2	ENST00000322535	human	ensembl	74_37	+1	known	frame_shift_del	c.2618	p.K875fs	1.000	NULL	pfam_DUF382,pfam_PSP,pfam_SAP_dom,smart_SAP_dom,smart_PSP,pfscan_SAP_dom	-	no_errors	SF3B2	HGNC	ENSG00000087365				128	0	0	173	26	13.0653
RIN1	0	genome.wustl.edu	37	11	66102588	66102588	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	11	66102588	66102588	G	-	DEL	RIN1	ENST00000311320	human	ensembl	74_37	-1	known	frame_shift_del	c.682	p.L228fs	1.000	NULL	pfam_VPS9,pfam_Ras-assoc,smart_SH2,smart_VPS9_subgr,smart_Ras-assoc,pfscan_Ras-assoc,pfscan_SH2,pfscan_VPS9	-	no_errors	RIN1	HGNC	ENSG00000174791				126	0	0	179	10	5.29101
NDUFC2	0	genome.wustl.edu	37	11	77784147	77784147	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	11	77784147	77784147	A	-	DEL	NDUFC2	ENST00000281031	human	ensembl	74_37	-1	known	frame_shift_del	c.207	p.F69fs	0.809	pfam_NADH-UbQ_OxRdtase_b14.5b_su,pirsf_NADH-UbQ_OxRdtase_b14.5b_su	pfam_NADH-UbQ_OxRdtase_b14.5b_su,pirsf_NADH-UbQ_OxRdtase_b14.5b_su	-	no_errors	NDUFC2	HGNC	ENSG00000151366				174	1	0.571429	206	45	17.9283
PIDD	0	genome.wustl.edu	37	11	799981	799981	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	11	799981	799981	C	-	DEL	PIDD	ENST00000347755	human	ensembl	74_37	-1	known	frame_shift_del	c.2308	p.A770fs	0.000	NULL	pfam_Peptidase_S68_pidd,pfam_Death_domain,pfam_Leu-rich_rpt,pfam_ZU5,superfamily_DEATH-like_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Death_domain,pfscan_Death_domain,pfscan_ZU5	-	no_errors	PIDD	HGNC	ENSG00000177595				56	0	0	99	18	15.3846
WNK1	0	genome.wustl.edu	37	12	1017928	1017928	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	12	1017928	1017928	C	-	DEL	WNK1	ENST00000530271	human	ensembl	74_37	+1	known	frame_shift_del	c.8613	p.P2873fs	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Kinase_OSR1/WNK_CCT,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	WNK1	HGNC	ENSG00000060237				100	0	0	153	17	10
CLEC9A	0	genome.wustl.edu	37	12	10205421	10205421	+	RNA	DEL	T	T	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	12	10205421	10205421	T	-	DEL	CLEC9A	ENST00000544751	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	CLEC9A	HGNC	ENSG00000197992				29	0	0	41	13	24.0741
GNPTAB	0	genome.wustl.edu	37	12	102158002	102158002	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	12	102158002	102158002	T	-	DEL	GNPTAB	ENST00000299314	human	ensembl	74_37	-1	known	frame_shift_del	c.2693	p.K898fs	1.000	NULL	pfam_DMAP1-bd,pfam_Notch_dom,pfam_DUF3184,superfamily_Notch_dom,smart_Notch_dom,pfscan_EF_hand_dom,pfscan_Notch_dom	-	no_errors	GNPTAB	HGNC	ENSG00000111670				315	0	0	371	87	18.9956
TAS2R50	0	genome.wustl.edu	37	12	11139431	11139432	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	12	11139431	11139432	-	A	INS	TAS2R50	ENST00000506868	human	ensembl	74_37	-1	known	frame_shift_ins	c.29_28	p.S10fs	0.001:0.001	pfam_TAS2_rcpt	pfam_TAS2_rcpt	-	no_errors	TAS2R50	HGNC	ENSG00000212126				105	0	0	118	16	11.9403
HECTD4	0	genome.wustl.edu	37	12	112600859	112600860	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	12	112600859	112600860	-	G	INS	HECTD4	ENST00000377560	human	ensembl	74_37	-1	known	frame_shift_ins	c.12591_12590	p.D4198fs	0.555:1.000	pfam_HECT,superfamily_HECT,smart_HECT,pfscan_HECT	pfam_HECT,superfamily_HECT,superfamily_ConA-like_lec_gl_sf,smart_HECT,pfscan_HECT	-	no_errors	HECTD4	HGNC	ENSG00000173064				200	0	0	186	80	30.0752
TAS2R42	0	genome.wustl.edu	37	12	11338799	11338799	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	12	11338799	11338799	A	-	DEL	TAS2R42	ENST00000334266	human	ensembl	74_37	-1	known	frame_shift_del	c.745	p.S249fs	0.015	pfam_TAS2_rcpt,pfscan_GPCR_Rhodpsn_7TM	pfam_TAS2_rcpt,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	TAS2R42	HGNC	ENSG00000186136				107	0	0	130	20	13.3333
HNF1A	0	genome.wustl.edu	37	12	121432115	121432115	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	12	121432115	121432115	G	-	DEL	HNF1A	ENST00000257555	human	ensembl	74_37	+1	known	frame_shift_del	c.862	p.P291fs	0.964	pfam_HNF1b_C	pfam_HNF1b_C,pfam_HNF-1_N,pfam_HNF1a_C,pfam_Homeobox_dom,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,superfamily_HNF1_dimer_dom,smart_Homeobox_dom,pfscan_Homeobox_dom	-	no_errors	HNF1A	HGNC	ENSG00000135100				19	0	0	15	5	25
RPL22P19	0	genome.wustl.edu	37	12	125420366	125420367	+	RNA	INS	-	-	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	12	125420366	125420367	-	T	INS	RPL22P19	ENST00000480427	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000:1.000	-	-	-	no_errors	RPL22P19	HGNC	ENSG00000241129				12	0	0	16	5	23.8095
STRAP	0	genome.wustl.edu	37	12	16047015	16047015	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	12	16047015	16047015	A	-	DEL	STRAP	ENST00000025399	human	ensembl	74_37	+1	known	frame_shift_del	c.477	p.A162fs	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	STRAP	HGNC	ENSG00000023734				158	0	0	215	49	18.5606
PLCZ1	0	genome.wustl.edu	37	12	18841025	18841025	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	12	18841025	18841025	T	-	DEL	PLCZ1	ENST00000266505	human	ensembl	74_37	-1	known	frame_shift_del	c.1589	p.N530fs	1.000	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,pfam_C2_dom,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_dom,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_dom,pfscan_EF_hand_dom,pfscan_C2_dom,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y,prints_Pinositol_PLipase_C	-	no_errors	PLCZ1	HGNC	ENSG00000139151				113	0	0	165	31	15.8163
PLCZ1	0	genome.wustl.edu	37	12	18858251	18858252	+	Splice_Site	INS	-	-	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	12	18858251	18858252	-	A	INS	PLCZ1	ENST00000266505	human	ensembl	74_37	-1	known	splice_site_ins	c.715-3_715-2	e6-2	0.999:0.883	-	-	-	no_errors	PLCZ1	HGNC	ENSG00000139151				165	1	0.60241	185	31	14.3519
PLEKHA5	0	genome.wustl.edu	37	12	19410380	19410381	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	12	19410380	19410381	-	A	INS	PLEKHA5	ENST00000317589	human	ensembl	74_37	+1	known	frame_shift_ins	c.446_447	p.V152fs	0.998:0.510	NULL	pfam_Pleckstrin_homology,superfamily_WW_dom,smart_WW_dom,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_WW_dom	-	no_errors	PLEKHA5	HGNC	ENSG00000052126				154	0	0	146	37	20.2186
KCNA5	0	genome.wustl.edu	37	12	5154457	5154457	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	12	5154457	5154457	G	-	DEL	KCNA5	ENST00000252321	human	ensembl	74_37	+1	known	frame_shift_del	c.1144	p.G383fs	0.855	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,pfam_PKD1_2_channel,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv1.5,prints_K_chnl_volt-dep_Kv1,prints_K_chnl_volt-dep_Kv	-	no_errors	KCNA5	HGNC	ENSG00000130037				85	0	0	117	14	10.687
ZC3H10	0	genome.wustl.edu	37	12	56514991	56514991	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	12	56514991	56514991	C	-	DEL	ZC3H10	ENST00000257940	human	ensembl	74_37	+1	known	frame_shift_del	c.645	p.P217fs	0.932	NULL	pfam_Znf_CCCH,smart_Znf_CCCH	-	no_errors	ZC3H10	HGNC	ENSG00000135482				89	0	0	144	23	13.7725
SLC16A7	0	genome.wustl.edu	37	12	60169112	60169112	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	12	60169112	60169112	T	-	DEL	SLC16A7	ENST00000261187	human	ensembl	74_37	+1	known	frame_shift_del	c.1036	p.F347fs	0.999	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Monocarb_transpt	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Monocarb_transpt	-	no_errors	SLC16A7	HGNC	ENSG00000118596				299	0	0	281	119	29.75
GPR162	0	genome.wustl.edu	37	12	6933721	6933721	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	12	6933721	6933721	G	-	DEL	GPR162	ENST00000311268	human	ensembl	74_37	+1	known	frame_shift_del	c.657	p.G221fs	0.499	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPR162	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPR162,prints_GCR_153/162	-	no_errors	GPR162	HGNC	ENSG00000250510				81	0	0	106	13	10.9244
MYF6	0	genome.wustl.edu	37	12	81101691	81101691	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	12	81101691	81101691	C	-	DEL	MYF6	ENST00000228641	human	ensembl	74_37	+1	known	frame_shift_del	c.193	p.P66fs	1.000	pfam_Basic,smart_Basic	pfam_Basic,pfam_bHLH_dom,superfamily_bHLH_dom,smart_Basic,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	MYF6	HGNC	ENSG00000111046				90	0	0	103	11	9.64912
ATP2B1	0	genome.wustl.edu	37	12	90020290	90020290	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	12	90020290	90020290	T	-	DEL	ATP2B1	ENST00000261173	human	ensembl	74_37	-1	known	frame_shift_del	c.1070	p.K357fs	1.000	pfam_ATPase_P-typ_transduc_dom_A,tigrfam_ATPase_P-typ_Ca-transp_plasma	pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_cation-transptr_C,pfam_ATP_Ca_trans_C,pfam_HAD-like_dom,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_P-typ_cyto_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Ca-transp_plasma,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP2B1	HGNC	ENSG00000070961				125	0	0	96	59	38.0645
TM9SF2	0	genome.wustl.edu	37	13	100191740	100191740	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	13	100191740	100191740	C	-	DEL	TM9SF2	ENST00000376387	human	ensembl	74_37	+1	known	frame_shift_del	c.757	p.M255fs	1.000	pfam_EMP70	pfam_EMP70	-	no_errors	TM9SF2	HGNC	ENSG00000125304				254	0	0	343	55	13.8191
COL4A2	0	genome.wustl.edu	37	13	111114439	111114439	+	RNA	DEL	T	T	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	13	111114439	111114439	T	-	DEL	COL4A2	ENST00000478681	human	ensembl	74_37	+1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	COL4A2	HGNC	ENSG00000134871				36	0	0	53	12	18.4615
COL4A2	0	genome.wustl.edu	37	13	111156323	111156324	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	13	111156323	111156324	-	C	INS	COL4A2	ENST00000360467	human	ensembl	74_37	+1	known	frame_shift_ins	c.4268_4269	p.G1426fs	1.000:0.956	pfam_Collagen	pfam_Collagen,pfam_Collagen_VI_NC,superfamily_C-type_lectin_fold,smart_Collagen_VI_NC	-	no_errors	COL4A2	HGNC	ENSG00000134871				67	0	0	99	10	9.17431
MPHOSPH8	0	genome.wustl.edu	37	13	20245322	20245322	+	RNA	DEL	T	T	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	13	20245322	20245322	T	-	DEL	MPHOSPH8	ENST00000496525	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	MPHOSPH8	HGNC	ENSG00000196199				53	0	0	56	16	22.2222
SACS	0	genome.wustl.edu	37	13	23912864	23912864	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	13	23912864	23912864	T	-	DEL	SACS	ENST00000382292	human	ensembl	74_37	-1	known	frame_shift_del	c.5151	p.K1717fs	0.000	NULL	pfam_HEPN,pfam_Ubiquitin_dom,superfamily_HATPase_ATP-bd,superfamily_DnaJ_domain,smart_HEPN,pfscan_HEPN,pfscan_DnaJ_domain,pfscan_Ubiquitin_supergroup	-	no_errors	SACS	HGNC	ENSG00000151835				71	0	0	90	12	11.7647
HMGB1	0	genome.wustl.edu	37	13	31037600	31037600	+	RNA	DEL	T	T	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	13	31037600	31037600	T	-	DEL	HMGB1	ENST00000468384	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	HMGB1	HGNC	ENSG00000189403				122	1	0.813008	117	22	15.8273
COG6	0	genome.wustl.edu	37	13	40254101	40254101	+	RNA	DEL	T	T	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	13	40254101	40254101	T	-	DEL	COG6	ENST00000465775	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	COG6	HGNC	ENSG00000133103				54	0	0	66	13	16.4557
CPB2	0	genome.wustl.edu	37	13	46658416	46658416	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	13	46658416	46658416	A	-	DEL	CPB2	ENST00000181383	human	ensembl	74_37	-1	known	frame_shift_del	c.213	p.F71fs	1.000	pfam_Prot_inh_M14A,superfamily_Prot_inh_propept	pfam_Peptidase_M14,pfam_Prot_inh_M14A,superfamily_Prot_inh_propept,smart_Peptidase_M14,prints_Peptidase_M14	-	no_errors	CPB2	HGNC	ENSG00000080618				172	0	0	186	43	18.7773
SETDB2	0	genome.wustl.edu	37	13	50057691	50057691	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	13	50057691	50057691	A	-	DEL	SETDB2	ENST00000317257	human	ensembl	74_37	+1	known	frame_shift_del	c.1510	p.M506fs	0.237	pfam_SET_dom,smart_SET_dom,pfscan_SET_dom	pfam_SET_dom,pfam_Pre-SET_dom,pfam_Methyl_CpG_DNA-bd,superfamily_DNA-bd_dom,smart_Methyl_CpG_DNA-bd,smart_Pre-SET_Zn-bd_sub,smart_SET_dom,pfscan_Methyl_CpG_DNA-bd,pfscan_SET_dom,pfscan_Pre-SET_dom	-	no_errors	SETDB2	HGNC	ENSG00000136169				21	0	0	30	5	14.2857
DYNC1H1	0	genome.wustl.edu	37	14	102476416	102476416	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	14	102476416	102476416	T	-	DEL	DYNC1H1	ENST00000360184	human	ensembl	74_37	+1	known	frame_shift_del	c.6214	p.F2073fs	0.999	superfamily_P-loop_NTPase	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,superfamily_Thioredoxin-like_fold,superfamily_Glutathione-S-Trfase_C-like,smart_AAA+_ATPase	-	no_errors	DYNC1H1	HGNC	ENSG00000197102				196	0	0	186	30	13.8889
PPP1R13B	0	genome.wustl.edu	37	14	104206432	104206432	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	14	104206432	104206432	G	-	DEL	PPP1R13B	ENST00000202556	human	ensembl	74_37	-1	known	frame_shift_del	c.2321	p.P774fs	0.035	NULL	pfam_Ankyrin_rpt,pfam_SH3_domain,pfam_SH3_2,superfamily_Ankyrin_rpt-contain_dom,superfamily_SH3_domain,smart_Ankyrin_rpt,smart_SH3_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SH3_domain,prints_SH3_domain	-	no_errors	PPP1R13B	HGNC	ENSG00000088808				153	0	0	154	31	16.7568
CPNE6	0	genome.wustl.edu	37	14	24546805	24546806	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	14	24546805	24546806	-	C	INS	CPNE6	ENST00000537691	human	ensembl	74_37	+1	known	frame_shift_ins	c.1705_1706	p.S571fs	0.850:0.993	pfscan_VWF_A	pfam_Copine,pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,smart_VWF_A,pfscan_C2_dom,pfscan_VWF_A	-	no_errors	CPNE6	HGNC	ENSG00000100884				433	0	0	544	65	10.6732
NPAS3	0	genome.wustl.edu	37	14	34243648	34243648	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	14	34243648	34243648	C	-	DEL	NPAS3	ENST00000356141	human	ensembl	74_37	+1	known	frame_shift_del	c.958	p.P321fs	1.000	smart_PAS	pfam_PAS_fold_3,pfam_PAS_fold,superfamily_PAS,superfamily_bHLH_dom,smart_bHLH_dom,smart_PAS,pfscan_PAS,pfscan_bHLH_dom	-	no_errors	NPAS3	HGNC	ENSG00000151322				169	0	0	210	36	14.6341
SEC23A	0	genome.wustl.edu	37	14	39514487	39514487	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	14	39514487	39514487	A	-	DEL	SEC23A	ENST00000307712	human	ensembl	74_37	-1	known	frame_shift_del	c.1779	p.F593fs	1.000	pfam_Sec23/24_helical_dom,superfamily_Sec23/24_helical_dom	pfam_Sec23/24_trunk_dom,pfam_Sec23/24_helical_dom,pfam_Sec23_24_beta_S,pfam_Znf_Sec23_Sec24,pfam_Gelsolin_dom,superfamily_Sec23/24_helical_dom,superfamily_Znf_Sec23_Sec24	-	no_errors	SEC23A	HGNC	ENSG00000100934				74	0	0	75	20	21.0526
FANCM	0	genome.wustl.edu	37	14	45645955	45645955	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	14	45645955	45645955	A	-	DEL	FANCM	ENST00000267430	human	ensembl	74_37	+1	known	frame_shift_del	c.3998	p.V1336fs	0.008	NULL	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,superfamily_Restrct_endonuc-II-like,superfamily_RuvA_2-like,smart_Helicase_ATP-bd,smart_Helicase_C,smart_ERCC4_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	FANCM	HGNC	ENSG00000187790				90	0	0	103	11	9.64912
PELI2	0	genome.wustl.edu	37	14	56757067	56757067	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	14	56757067	56757067	G	-	DEL	PELI2	ENST00000267460	human	ensembl	74_37	+1	known	frame_shift_del	c.589	p.G198fs	0.996	pfam_Pellino_fam	pfam_Pellino_fam	-	no_errors	PELI2	HGNC	ENSG00000139946				211	0	0	273	44	13.8801
SYNE2	0	genome.wustl.edu	37	14	64564782	64564784	+	In_Frame_Del	DEL	AAG	AAG	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	AAG	AAG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	14	64564782	64564784	AAG	-	DEL	SYNE2	ENST00000358025	human	ensembl	74_37	+1	known	in_frame_del	c.12224_12226	p.E4076in_frame_del	0.248:0.006:0.004	NULL	pfam_CH-domain,pfam_KASH,pfam_Spectrin_repeat,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE2	HGNC	ENSG00000054654				104	0	0	126	34	21.25
ERH	0	genome.wustl.edu	37	14	69847232	69847232	+	RNA	DEL	C	C	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	14	69847232	69847232	C	-	DEL	ERH	ENST00000216520	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	ERH	HGNC	ENSG00000100632				142	1	0.699301	180	43	19.2825
FOXN3	0	genome.wustl.edu	37	14	89878534	89878534	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	14	89878534	89878534	G	-	DEL	FOXN3	ENST00000261302	human	ensembl	74_37	-1	known	frame_shift_del	c.287	p.P96fs	0.998	NULL	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXN3	HGNC	ENSG00000053254				134	0	0	150	28	15.7303
NDUFB1	0	genome.wustl.edu	37	14	92587868	92587869	+	RNA	INS	-	-	G			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	14	92587868	92587869	-	G	INS	NDUFB1	ENST00000556555	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.002:0.000	-	-	-	no_errors	NDUFB1	HGNC	ENSG00000183648				39	0	0	32	9	21.9512
SNHG14	0	genome.wustl.edu	37	15	25227367	25227367	+	RNA	DEL	T	T	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	15	25227367	25227367	T	-	DEL	SNHG14	ENST00000551361	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SNHG14	HGNC	ENSG00000224078				18	0	0	21	7	25
SNORD115-33	0	genome.wustl.edu	37	15	25476032	25476033	+	RNA	INS	-	-	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	15	25476032	25476033	-	A	INS	SNORD115-33	ENST00000363723	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.993:0.994	-	-	-	no_errors	SNORD115-33	HGNC	ENSG00000200593				396	0	0	502	89	15.0592
TRPM1	0	genome.wustl.edu	37	15	31329989	31329989	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	15	31329989	31329989	T	-	DEL	TRPM1	ENST00000542188	human	ensembl	74_37	-1	known	frame_shift_del	c.2547	p.K849fs	0.992	NULL	pfam_Ion_trans_dom	-	no_errors	TRPM1	HGNC	ENSG00000134160				105	0	0	113	22	16.2963
NUTM1	0	genome.wustl.edu	37	15	34647969	34647969	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	15	34647969	34647969	C	-	DEL	NUTM1	ENST00000333756	human	ensembl	74_37	+1	known	frame_shift_del	c.1676	p.S561fs	0.004	NULL	NULL	-	no_errors	NUTM1	HGNC	ENSG00000184507				136	0	0	175	24	12.0603
CDAN1	0	genome.wustl.edu	37	15	43023871	43023871	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	15	43023871	43023871	G	-	DEL	CDAN1	ENST00000356231	human	ensembl	74_37	-1	known	frame_shift_del	c.1686	p.T563fs	0.881	NULL	NULL	-	no_errors	CDAN1	HGNC	ENSG00000140326				103	0	0	145	14	8.80503
PIGB	0	genome.wustl.edu	37	15	55621921	55621922	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	15	55621921	55621922	-	T	INS	PIGB	ENST00000164305	human	ensembl	74_37	+1	known	frame_shift_ins	c.524_523	p.C177fs	1.000:1.000	pfam_GPI_mannosylTrfase	pfam_GPI_mannosylTrfase	-	no_errors	PIGB	HGNC	ENSG00000069943				174	0	0	203	38	15.7676
CRAMP1L	0	genome.wustl.edu	37	16	1706239	1706239	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	16	1706239	1706239	C	-	DEL	CRAMP1L	ENST00000293925	human	ensembl	74_37	+1	known	frame_shift_del	c.1481	p.E497fs	0.070	NULL	superfamily_Homeodomain-like,smart_SANT/Myb	-	no_errors	CRAMP1L	HGNC	ENSG00000007545				45	0	0	45	12	21.0526
HAGH	0	genome.wustl.edu	37	16	1867176	1867176	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	16	1867176	1867176	G	-	DEL	HAGH	ENST00000397356	human	ensembl	74_37	-1	known	frame_shift_del	c.638	p.P213fs	0.896	pfam_Beta-lactamas-like,smart_Beta-lactamas-like,tigrfam_Hydroxyacylglutathione_Hdrlase	pfam_Beta-lactamas-like,smart_Beta-lactamas-like,tigrfam_Hydroxyacylglutathione_Hdrlase	-	no_errors	HAGH	HGNC	ENSG00000063854				85	0	0	96	16	14.2857
OTOA	0	genome.wustl.edu	37	16	21721321	21721321	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	16	21721321	21721321	C	-	DEL	OTOA	ENST00000286149	human	ensembl	74_37	+1	known	frame_shift_del	c.1259	p.E422fs	0.997	NULL	NULL	-	no_errors	OTOA	HGNC	ENSG00000155719				70	0	0	64	13	16.8831
PRRT2	0	genome.wustl.edu	37	16	29825015	29825016	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	16	29825015	29825016	-	C	INS	PRRT2	ENST00000567659	human	ensembl	74_37	+1	known	frame_shift_ins	c.640_641	p.R217fs	1.000:1.000	NULL	pfam_CD225/Dispanin_fam	-	no_errors	PRRT2	HGNC	ENSG00000167371				35	0	0	38	10	20.8333
SETD1A	0	genome.wustl.edu	37	16	30977316	30977317	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	16	30977316	30977317	-	C	INS	SETD1A	ENST00000262519	human	ensembl	74_37	+1	known	frame_shift_ins	c.2114_2115	p.G708fs	0.763:0.729	NULL	pfam_COMPASS_Set1_N-SET,pfam_SET_dom,pfam_RRM_dom,smart_RRM_dom,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_RRM_dom	-	no_errors	SETD1A	HGNC	ENSG00000099381				142	0	0	160	16	9.09091
CNOT1	0	genome.wustl.edu	37	16	58589340	58589340	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	16	58589340	58589340	A	-	DEL	CNOT1	ENST00000317147	human	ensembl	74_37	-1	known	frame_shift_del	c.2706	p.Q904fs	0.995	NULL	pfam_CCR4-Not_Not1_C,superfamily_ARM-type_fold	-	no_errors	CNOT1	HGNC	ENSG00000125107				282	0	0	310	60	16.2162
C16orf70	0	genome.wustl.edu	37	16	67180989	67180989	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	16	67180989	67180989	C	-	DEL	C16orf70	ENST00000219139	human	ensembl	74_37	+1	known	frame_shift_del	c.1224	p.R411fs	0.994	NULL	pfam_UPF0183	-	no_errors	C16orf70	HGNC	ENSG00000125149				247	0	0	286	30	9.49367
PLEKHG4	0	genome.wustl.edu	37	16	67318243	67318243	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	16	67318243	67318243	C	-	DEL	PLEKHG4	ENST00000360461	human	ensembl	74_37	+1	known	frame_shift_del	c.1575	p.P527fs	0.041	NULL	pfam_DH-domain,superfamily_DH-domain,superfamily_CRAL-TRIO_dom,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PLEKHG4	HGNC	ENSG00000196155				38	0	0	51	6	10.5263
WDR90	0	genome.wustl.edu	37	16	709106	709106	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	16	709106	709106	C	-	DEL	WDR90	ENST00000549091	human	ensembl	74_37	+1	novel	frame_shift_del	c.3032	p.P1013fs	0.000	NULL	pfam_WD40_repeat,pfam_DUF667,pfam_Nucleoporin_Nup160,superfamily_Quinonprotein_ADH-like_supfam,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR90	HGNC	ENSG00000161996				140	0	0	177	22	11.0553
AP1G1	0	genome.wustl.edu	37	16	71803440	71803440	+	Splice_Site	DEL	A	A	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	16	71803440	71803440	A	-	DEL	AP1G1	ENST00000423132	human	ensembl	74_37	-1	known	splice_site_del	c.643-1	e6-1	0.996	-	-	-	no_errors	AP1G1	HGNC	ENSG00000166747				31	0	0	38	8	17.3913
BCAR1	0	genome.wustl.edu	37	16	75263554	75263556	+	In_Frame_Del	DEL	AGG	AGG	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	AGG	AGG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	16	75263554	75263556	AGG	-	DEL	BCAR1	ENST00000418647	human	ensembl	74_37	-1	known	in_frame_del	c.2606_2604	p.L869in_frame_del	1.000:1.000:0.970	pfam_CAS_DUF3513	pfam_CAS_DUF3513,pfam_Serine_rich,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain,prints_SH3_domain,prints_Spectrin_alpha_SH3	-	no_errors	BCAR1	HGNC	ENSG00000050820				36	0	0	56	16	22.2222
CFDP1	0	genome.wustl.edu	37	16	75327732	75327732	+	RNA	DEL	A	A	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	16	75327732	75327732	A	-	DEL	CFDP1	ENST00000570103	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.940	-	-	-	no_errors	CFDP1	HGNC	ENSG00000153774				15	0	0	18	5	21.7391
B9D1	0	genome.wustl.edu	37	17	19263639	19263639	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	17	19263639	19263639	G	-	DEL	B9D1	ENST00000261499	human	ensembl	74_37	-1	known	frame_shift_del	c.126	p.T43fs	1.000	pfam_B9_dom	pfam_B9_dom	-	no_errors	B9D1	HGNC	ENSG00000108641				344	0	0	374	44	10.5263
ALDH3A1	0	genome.wustl.edu	37	17	19646567	19646567	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	17	19646567	19646567	G	-	DEL	ALDH3A1	ENST00000225740	human	ensembl	74_37	-1	known	frame_shift_del	c.372	p.M125fs	0.943	pfam_Aldehyde_DH_dom,pfam_Acyl-CoA_reduct_LuxC,superfamily_Ald_DH/histidinol_DH,pirsf_Aldehyde_DH_NAD(P)	pfam_Aldehyde_DH_dom,pfam_Acyl-CoA_reduct_LuxC,superfamily_Ald_DH/histidinol_DH,pirsf_Aldehyde_DH_NAD(P)	-	no_errors	ALDH3A1	HGNC	ENSG00000108602				78	0	0	85	14	14.1414
EFCAB5	0	genome.wustl.edu	37	17	28296060	28296061	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	17	28296060	28296061	-	A	INS	EFCAB5	ENST00000394835	human	ensembl	74_37	+1	known	frame_shift_ins	c.442_443	p.L151fs	0.000:0.000	NULL	pfscan_EF_hand_dom	-	no_errors	EFCAB5	HGNC	ENSG00000176927				17	0	0	21	6	22.2222
NF1	0	genome.wustl.edu	37	17	29677244	29677244	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	17	29677244	29677244	A	-	DEL	NF1	ENST00000358273	human	ensembl	74_37	+1	known	frame_shift_del	c.7365	p.K2456fs	1.000	superfamily_ARM-type_fold	pfam_RasGAP,superfamily_Rho_GTPase_activation_prot,superfamily_ARM-type_fold,superfamily_CRAL-TRIO_dom,smart_RasGAP,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom,pfscan_RasGAP	-	no_errors	NF1	HGNC	ENSG00000196712				169	0	0	222	33	12.9412
NF1	0	genome.wustl.edu	37	17	29683984	29683985	+	Frame_Shift_Del	DEL	AG	AG	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	17	29683984	29683985	AG	-	DEL	NF1	ENST00000358273	human	ensembl	74_37	+1	known	frame_shift_del	c.7745_7746	p.R2583fs	0.964:0.737	superfamily_ARM-type_fold	pfam_RasGAP,superfamily_Rho_GTPase_activation_prot,superfamily_ARM-type_fold,superfamily_CRAL-TRIO_dom,smart_RasGAP,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom,pfscan_RasGAP	-	no_errors	NF1	HGNC	ENSG00000196712				344	0	0	343	55	13.8191
TMEM99	0	genome.wustl.edu	37	17	38991373	38991373	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	17	38991373	38991373	T	-	DEL	TMEM99	ENST00000301665	human	ensembl	74_37	+1	known	frame_shift_del	c.605	p.L204fs	0.000	NULL	NULL	-	no_errors	TMEM99	HGNC	ENSG00000167920				124	0	0	132	28	17.5
WNK4	0	genome.wustl.edu	37	17	40939467	40939467	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	17	40939467	40939467	C	-	DEL	WNK4	ENST00000246914	human	ensembl	74_37	+1	known	frame_shift_del	c.1648	p.S552fs	0.013	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Kinase_OSR1/WNK_CCT,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	WNK4	HGNC	ENSG00000126562				154	0	0	204	34	14.2857
EFCAB13	0	genome.wustl.edu	37	17	45412714	45412715	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	17	45412714	45412715	-	A	INS	EFCAB13	ENST00000331493	human	ensembl	74_37	+1	known	frame_shift_ins	c.183_184	p.I63fs	0.005:0.011	NULL	NULL	-	no_errors	EFCAB13	HGNC	ENSG00000178852				48	0	0	50	12	19.3548
RPL12P38	0	genome.wustl.edu	37	17	58512419	58512419	+	RNA	DEL	A	A	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	17	58512419	58512419	A	-	DEL	RPL12P38	ENST00000588627	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.998	-	-	-	no_errors	RPL12P38	HGNC	ENSG00000213228				13	0	0	19	6	24
RECQL5	0	genome.wustl.edu	37	17	73658970	73658971	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	17	73658970	73658971	-	T	INS	RECQL5	ENST00000317905	human	ensembl	74_37	-1	known	frame_shift_ins	c.360_359	p.P121fs	0.988:0.990	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd,tigrfam_DNA_helicase_ATP-dep_RecQ	pfam_RecQ_helicase-like_5,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,tigrfam_DNA_helicase_ATP-dep_RecQ	-	no_errors	RECQL5	HGNC	ENSG00000108469				475	0	0	548	113	17.0953
CEP76	0	genome.wustl.edu	37	18	12678201	12678201	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	18	12678201	12678201	G	-	DEL	CEP76	ENST00000262127	human	ensembl	74_37	-1	known	frame_shift_del	c.1530	p.P512fs	0.966	NULL	superfamily_C2_dom	-	no_errors	CEP76	HGNC	ENSG00000101624				193	1	0.515464	218	39	15.1751
CEP192	0	genome.wustl.edu	37	18	13049146	13049146	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	18	13049146	13049146	A	-	DEL	CEP192	ENST00000506447	human	ensembl	74_37	+1	known	frame_shift_del	c.2356	p.T788fs	0.947	NULL	NULL	-	no_errors	CEP192	HGNC	ENSG00000101639				74	0	0	106	18	14.5161
RNMT	0	genome.wustl.edu	37	18	13746253	13746253	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	18	13746253	13746253	A	-	DEL	RNMT	ENST00000262173	human	ensembl	74_37	+1	known	frame_shift_del	c.1174	p.T394fs	1.000	pfam_mRNA_G-N7_MeTrfase_dom,pirsf_mRNA_G-N7_MeTrfase	pfam_mRNA_G-N7_MeTrfase_dom,pfam_Methyltransf_11,pirsf_mRNA_G-N7_MeTrfase	-	no_errors	RNMT	HGNC	ENSG00000101654				122	0	0	144	32	18.1818
OSBPL1A	0	genome.wustl.edu	37	18	21750331	21750331	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	18	21750331	21750331	T	-	DEL	OSBPL1A	ENST00000319481	human	ensembl	74_37	-1	known	frame_shift_del	c.2378	p.N793fs	1.000	pfam_Oxysterol-bd	pfam_Oxysterol-bd,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Pleckstrin_homology,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Pleckstrin_homology,prints_Ankyrin_rpt	-	no_errors	OSBPL1A	HGNC	ENSG00000141447				170	0	0	185	39	17.4107
ENSG00000263606	0	genome.wustl.edu	37	18	2946534	2946534	+	RNA	DEL	T	T	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	18	2946534	2946534	T	-	DEL	ENSG00000263606	ENST00000581139	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.978	-	-	-	no_errors	RP11-737O24.3	Clone_based_vega_gene	ENSG00000263606				34	0	0	40	10	20
SYT4	0	genome.wustl.edu	37	18	40857246	40857246	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	18	40857246	40857246	T	-	DEL	SYT4	ENST00000255224	human	ensembl	74_37	-1	known	frame_shift_del	c.1	p.M1fs	1.000	NULL	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom,prints_Synaptotagmin	-	no_errors	SYT4	HGNC	ENSG00000132872				98	0	0	105	10	8.69565
SETBP1	0	genome.wustl.edu	37	18	42533199	42533200	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	18	42533199	42533200	-	A	INS	SETBP1	ENST00000282030	human	ensembl	74_37	+1	known	frame_shift_ins	c.3894_3895	p.R1299fs	1.000:1.000	NULL	smart_AT_hook_DNA-bd_motif	-	no_errors	SETBP1	HGNC	ENSG00000152217				129	0	0	135	16	10.596
ALPK2	0	genome.wustl.edu	37	18	56246941	56246941	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	18	56246941	56246941	A	-	DEL	ALPK2	ENST00000361673	human	ensembl	74_37	-1	known	frame_shift_del	c.1067	p.L356fs	1.000	NULL	pfam_MHCK_EF2_kinase,pfam_Ig_I-set,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_MHCK_EF2_kinase,pfscan_MHCK_EF2_kinase,pfscan_Ig-like_dom	-	no_errors	ALPK2	HGNC	ENSG00000198796				126	0	0	155	40	20.5128
LMAN1	0	genome.wustl.edu	37	18	57013194	57013194	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	18	57013194	57013194	T	-	DEL	LMAN1	ENST00000251047	human	ensembl	74_37	-1	known	frame_shift_del	c.912	p.E305fs	0.898	superfamily_HMG_box_dom	pfam_Lectin_leg,superfamily_ConA-like_lec_gl_sf,superfamily_HMG_box_dom	-	no_errors	LMAN1	HGNC	ENSG00000074695				165	0	0	191	45	19.0678
SOGA2	0	genome.wustl.edu	37	18	8785836	8785836	+	RNA	DEL	C	C	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	18	8785836	8785836	C	-	DEL	SOGA2	ENST00000523811	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.086	-	-	-	no_errors	SOGA2	HGNC	ENSG00000168502				25	0	0	23	4	14.8148
ENSG00000267387	0	genome.wustl.edu	37	19	10200538	10200538	+	RNA	DEL	C	C	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	19	10200538	10200538	C	-	DEL	ENSG00000267387	ENST00000589622	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.015	-	-	-	no_errors	CTD-2240E14.4	Clone_based_vega_gene	ENSG00000267387				16	0	0	18	4	18.1818
EIF3G	0	genome.wustl.edu	37	19	10227489	10227491	+	In_Frame_Del	DEL	CTC	CTC	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	CTC	CTC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	19	10227489	10227491	CTC	-	DEL	EIF3G	ENST00000253108	human	ensembl	74_37	-1	known	in_frame_del	c.582_580	p.E194in_frame_del	1.000:1.000:1.000	pirsf_eIF3_g	pfam_eIF3g_N,pfam_RRM_dom,smart_RRM_dom,pirsf_eIF3_g,pfscan_RRM_dom	-	no_errors	EIF3G	HGNC	ENSG00000130811				147	0	0	224	25	10.0402
C19orf26	0	genome.wustl.edu	37	19	1231034	1231034	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	19	1231034	1231034	G	-	DEL	C19orf26	ENST00000590083	human	ensembl	74_37	-1	known	frame_shift_del	c.1220	p.P407fs	0.001	NULL	NULL	-	no_errors	C19orf26	HGNC	ENSG00000099625				55	0	0	66	11	14.2857
CACNA1A	0	genome.wustl.edu	37	19	13395982	13395983	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	19	13395982	13395983	-	T	INS	CACNA1A	ENST00000360228	human	ensembl	74_37	-1	known	frame_shift_ins	c.3592_3591	p.E1197fs	1.000:1.000	prints_VDCC_P/Q_a1su	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCCAlpha1,prints_VDCC_P/Q_a1su	-	no_errors	CACNA1A	HGNC	ENSG00000141837				115	0	0	141	19	11.875
REXO1	0	genome.wustl.edu	37	19	1828553	1828553	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	19	1828553	1828553	C	-	DEL	REXO1	ENST00000170168	human	ensembl	74_37	-1	known	frame_shift_del	c.235	p.E79fs	0.000	NULL	pfam_Exonuclease_RNaseT/DNA_pol3,superfamily_RNaseH-like_dom,smart_Exonuclease	-	no_errors	REXO1	HGNC	ENSG00000079313				53	0	0	69	10	12.6582
ZNF506	0	genome.wustl.edu	37	19	19906351	19906351	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	19	19906351	19906351	T	-	DEL	ZNF506	ENST00000443905	human	ensembl	74_37	-1	known	frame_shift_del	c.345	p.G116fs	0.861	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF506	HGNC	ENSG00000081665				109	0	0	149	21	12.3529
ZNF682	0	genome.wustl.edu	37	19	20116856	20116856	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	19	20116856	20116856	T	-	DEL	ZNF682	ENST00000397165	human	ensembl	74_37	-1	known	frame_shift_del	c.1455	p.K485fs	0.035	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF682	HGNC	ENSG00000197124				108	0	0	177	28	13.6585
RGS9BP	0	genome.wustl.edu	37	19	33167776	33167776	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	19	33167776	33167776	G	-	DEL	RGS9BP	ENST00000334176	human	ensembl	74_37	+1	known	frame_shift_del	c.607	p.G205fs	0.000	NULL	NULL	-	no_errors	RGS9BP	HGNC	ENSG00000186326				16	0	0	14	5	26.3158
C19orf40	0	genome.wustl.edu	37	19	33464996	33464997	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	19	33464996	33464997	-	A	INS	C19orf40	ENST00000588258	human	ensembl	74_37	+1	known	frame_shift_ins	c.274_275	p.T94fs	1.000:1.000	NULL	superfamily_RuvA_2-like	-	no_errors	C19orf40	HGNC	ENSG00000131944				73	0	0	98	26	20.9677
ZNF570	0	genome.wustl.edu	37	19	37975122	37975122	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	19	37975122	37975122	A	-	DEL	ZNF570	ENST00000330173	human	ensembl	74_37	+1	known	frame_shift_del	c.598	p.N202fs	0.002	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF570	HGNC	ENSG00000171827				345	0	0	411	86	17.3038
ZNF540	0	genome.wustl.edu	37	19	38102620	38102620	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	19	38102620	38102620	A	-	DEL	ZNF540	ENST00000316433	human	ensembl	74_37	+1	known	frame_shift_del	c.439	p.M149fs	0.001	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF540	HGNC	ENSG00000171817				184	1	0.540541	175	43	19.7248
ZFP36	0	genome.wustl.edu	37	19	39898575	39898575	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	19	39898575	39898575	C	-	DEL	ZFP36	ENST00000597629	human	ensembl	74_37	+1	known	frame_shift_del	c.235	p.P80fs	1.000	NULL	pfam_Znf_CCCH,smart_Znf_CCCH	-	no_errors	ZFP36	HGNC	ENSG00000128016				61	0	0	90	7	7.21649
SUPT5H	0	genome.wustl.edu	37	19	39959402	39959402	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	19	39959402	39959402	G	-	DEL	SUPT5H	ENST00000432763	human	ensembl	74_37	+1	known	frame_shift_del	c.1044	p.G350fs	0.964	pirsf_TF_Spt5	pfam_TF_Spt5_NGN-domain,pfam_KOW,pfam_Spt5_N,superfamily_Translation_prot_SH3-like,smart_Transcrpt_antiterm_NusG_N_dom,smart_KOW,pirsf_TF_Spt5	-	no_errors	SUPT5H	HGNC	ENSG00000196235				112	0	0	115	33	22.2973
TIMM50	0	genome.wustl.edu	37	19	39977066	39977066	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	19	39977066	39977066	C	-	DEL	TIMM50	ENST00000314349	human	ensembl	74_37	+1	known	frame_shift_del	c.936	p.H314fs	1.000	pfam_NIF,superfamily_HAD-like_dom,smart_NIF,pfscan_NIF	pfam_NIF,superfamily_HAD-like_dom,smart_NIF,pfscan_NIF	-	no_errors	TIMM50	HGNC	ENSG00000105197				188	0	0	229	34	12.9278
ERF	0	genome.wustl.edu	37	19	42753368	42753368	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	19	42753368	42753368	C	-	DEL	ERF	ENST00000222329	human	ensembl	74_37	-1	known	frame_shift_del	c.896	p.G299fs	0.941	NULL	pfam_Ets_dom,smart_Ets_dom,pfscan_Ets_dom,prints_Ets_dom	-	no_errors	ERF	HGNC	ENSG00000105722				31	0	0	39	3	7.14286
SIX5	0	genome.wustl.edu	37	19	46269107	46269107	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	19	46269107	46269107	G	-	DEL	SIX5	ENST00000317578	human	ensembl	74_37	-1	known	frame_shift_del	c.1872	p.A625fs	0.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	-	no_errors	SIX5	HGNC	ENSG00000177045				26	0	0	35	7	16.6667
HSD17B14	0	genome.wustl.edu	37	19	49316983	49316984	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	19	49316983	49316984	-	C	INS	HSD17B14	ENST00000263278	human	ensembl	74_37	-1	known	frame_shift_ins	c.479_478	p.A160fs	1.000:1.000	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,prints_Glc/ribitol_DH,prints_DH_sc/Rdtase_SDR	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,pfam_Epimerase_deHydtase,prints_Glc/ribitol_DH,prints_DH_sc/Rdtase_SDR,prints_DHB_DH	-	no_errors	HSD17B14	HGNC	ENSG00000087076				130	1	0.763359	149	26	14.8571
SCAF1	0	genome.wustl.edu	37	19	50158042	50158042	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	19	50158042	50158042	C	-	DEL	SCAF1	ENST00000360565	human	ensembl	74_37	+1	known	frame_shift_del	c.3533	p.T1181fs	0.934	NULL	NULL	-	no_errors	SCAF1	HGNC	ENSG00000126461				68	0	0	113	6	5.04202
LOC101928780	0	genome.wustl.edu	37	19	54627040	54627041	+	RNA	DEL	CA	CA	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	CA	CA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	19	54627040	54627041	CA	-	DEL	LOC101928780	ENST00000452097	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000:0.001	-	-	-	no_errors	AC012314.8	Clone_based_vega_gene	ENSG00000237017				17	0	0	43	8	15.6863
LOC101928780	0	genome.wustl.edu	37	19	54628068	54628068	+	RNA	DEL	C	C	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	19	54628068	54628068	C	-	DEL	LOC101928780	ENST00000452097	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	AC012314.8	Clone_based_vega_gene	ENSG00000237017				51	0	0	82	7	7.86517
BRSK1	0	genome.wustl.edu	37	19	55815036	55815036	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	19	55815036	55815036	C	-	DEL	BRSK1	ENST00000590333	human	ensembl	74_37	+1	known	frame_shift_del	c.1176	p.R395fs	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Prot_kinase_dom	-	no_errors	BRSK1	HGNC	ENSG00000160469				130	1	0.763359	116	54	31.7647
U2AF2	0	genome.wustl.edu	37	19	56173906	56173906	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	19	56173906	56173906	G	-	DEL	U2AF2	ENST00000308924	human	ensembl	74_37	+1	known	frame_shift_del	c.525	p.L178fs	0.923	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,tigrfam_U2AF_lg	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,tigrfam_U2AF_lg	-	no_errors	U2AF2	HGNC	ENSG00000063244				86	0	0	130	29	18.239
SAFB	0	genome.wustl.edu	37	19	5667115	5667115	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	19	5667115	5667115	G	-	DEL	SAFB	ENST00000588852	human	ensembl	74_37	+1	known	frame_shift_del	c.2393	p.G800fs	1.000	NULL	pfam_RRM_dom,pfam_SAP_dom,smart_SAP_dom,smart_RRM_dom,pfscan_SAP_dom,pfscan_RRM_dom	-	no_errors	SAFB	HGNC	ENSG00000160633				109	0	0	147	19	11.4458
VAV1	0	genome.wustl.edu	37	19	6832176	6832178	+	In_Frame_Del	DEL	GAA	GAA	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	GAA	GAA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	19	6832176	6832178	GAA	-	DEL	VAV1	ENST00000602142	human	ensembl	74_37	+1	known	in_frame_del	c.1473_1475	p.K494in_frame_del	1.000:1.000:1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_DH-domain,pfam_SH3_domain,pfam_SH3_2,pfam_CAMSAP_CH,pfam_SH2,pfam_CH-domain,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pleckstrin_homology,superfamily_DH-domain,superfamily_CH-domain,superfamily_SH3_domain,smart_CH-domain,smart_DH-domain,smart_Pleckstrin_homology,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_SH3_domain,smart_SH2,pfscan_CH-domain,pfscan_Pleckstrin_homology,pfscan_SH2,pfscan_SH3_domain,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_DH-domain,prints_SH3_domain,prints_SH2,prints_SM22_calponin	-	no_errors	VAV1	HGNC	ENSG00000141968				69	0	0	71	9	11.25
CCDC138	0	genome.wustl.edu	37	2	109421455	109421455	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	2	109421455	109421455	A	-	DEL	CCDC138	ENST00000295124	human	ensembl	74_37	+1	known	frame_shift_del	c.846	p.K284fs	0.996	NULL	NULL	-	no_errors	CCDC138	HGNC	ENSG00000163006				41	0	0	49	11	18.3333
CCDC93	0	genome.wustl.edu	37	2	118732806	118732806	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	2	118732806	118732806	T	-	DEL	CCDC93	ENST00000376300	human	ensembl	74_37	-1	known	frame_shift_del	c.708	p.A237fs	0.987	NULL	pfam_DUF2037	-	no_errors	CCDC93	HGNC	ENSG00000125633				370	0	0	408	72	15
ENSG00000231731	0	genome.wustl.edu	37	2	128263364	128263366	+	RNA	DEL	AAA	AAA	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	AAA	AAA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	2	128263364	128263366	AAA	-	DEL	ENSG00000231731	ENST00000599001	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.233:0.319:0.309	-	-	-	no_errors	AC010976.2	Clone_based_vega_gene	ENSG00000231731				67	0	0	67	22	24.7191
ACVR2A	0	genome.wustl.edu	37	2	148683686	148683686	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	2	148683686	148683686	A	-	DEL	ACVR2A	ENST00000241416	human	ensembl	74_37	+1	known	frame_shift_del	c.1303	p.K437fs	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Activin_rcpt,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_TGFB_receptor	-	no_errors	ACVR2A	HGNC	ENSG00000121989				237	1	0.420168	167	80	32.3887
RBM43	0	genome.wustl.edu	37	2	152112048	152112048	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	2	152112048	152112048	T	-	DEL	RBM43	ENST00000331426	human	ensembl	74_37	-1	known	frame_shift_del	c.213	p.V72fs	0.948	pfscan_RRM_dom	pfscan_RRM_dom	-	no_errors	RBM43	HGNC	ENSG00000184898				208	0	0	231	52	18.3746
RIF1	0	genome.wustl.edu	37	2	152320989	152320989	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	2	152320989	152320989	A	-	DEL	RIF1	ENST00000243326	human	ensembl	74_37	+1	known	frame_shift_del	c.4955	p.N1654fs	0.000	NULL	pfam_Rif1_N,superfamily_ARM-type_fold	-	no_errors	RIF1	HGNC	ENSG00000080345				76	0	0	83	17	17
GALNT5	0	genome.wustl.edu	37	2	158167732	158167733	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	2	158167732	158167733	-	T	INS	GALNT5	ENST00000259056	human	ensembl	74_37	+1	known	frame_shift_ins	c.2695_2696	p.E901fs	1.000:1.000	pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	GALNT5	HGNC	ENSG00000136542				200	0	0	244	57	18.9369
RAD51AP2	0	genome.wustl.edu	37	2	17697087	17697088	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	2	17697087	17697088	-	A	INS	RAD51AP2	ENST00000399080	human	ensembl	74_37	-1	known	frame_shift_ins	c.2596_2595	p.P865fs	0.000:0.000	NULL	NULL	-	no_errors	RAD51AP2	HGNC	ENSG00000214842				47	0	0	43	7	14
SMC6	0	genome.wustl.edu	37	2	17898126	17898126	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	2	17898126	17898126	T	-	DEL	SMC6	ENST00000381272	human	ensembl	74_37	-1	known	frame_shift_del	c.1306	p.I436fs	1.000	superfamily_P-loop_NTPase	superfamily_P-loop_NTPase	-	no_errors	SMC6	HGNC	ENSG00000163029				59	0	0	77	14	15.3846
FAM171B	0	genome.wustl.edu	37	2	187626384	187626384	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	2	187626384	187626384	A	-	DEL	FAM171B	ENST00000304698	human	ensembl	74_37	+1	known	frame_shift_del	c.1315	p.K440fs	0.118	pfam_Uncharacterised_FAM171	pfam_Uncharacterised_FAM171	-	no_errors	FAM171B	HGNC	ENSG00000144369				143	0	0	151	31	17.033
PMS1	0	genome.wustl.edu	37	2	190670540	190670540	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	2	190670540	190670540	A	-	DEL	PMS1	ENST00000409985	human	ensembl	74_37	+1	novel	frame_shift_del	c.478	p.K163fs	0.001	NULL	pfam_HATPase_ATP-bd,superfamily_HATPase_ATP-bd	-	no_errors	PMS1	HGNC	ENSG00000064933				20	0	0	31	7	18.4211
CCDC150	0	genome.wustl.edu	37	2	197531519	197531519	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	2	197531519	197531519	A	-	DEL	CCDC150	ENST00000389175	human	ensembl	74_37	+1	known	frame_shift_del	c.839	p.K283fs	0.374	NULL	NULL	-	no_errors	CCDC150	HGNC	ENSG00000144395				41	0	0	48	18	27.2727
ENSG00000257045	0	genome.wustl.edu	37	2	200193649	200193649	+	RNA	DEL	A	A	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	2	200193649	200193649	A	-	DEL	ENSG00000257045	ENST00000489557	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RP11-486F17.1	Clone_based_vega_gene	ENSG00000257045				24	0	0	48	9	15.7895
KANSL1L	0	genome.wustl.edu	37	2	210887680	210887680	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	2	210887680	210887680	T	-	DEL	KANSL1L	ENST00000281772	human	ensembl	74_37	-1	known	frame_shift_del	c.2957	p.N986fs	0.980	NULL	NULL	-	no_errors	KANSL1L	HGNC	ENSG00000144445				67	0	0	86	22	20.3704
KANSL1L	0	genome.wustl.edu	37	2	211019062	211019062	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	2	211019062	211019062	A	-	DEL	KANSL1L	ENST00000281772	human	ensembl	74_37	-1	known	frame_shift_del	c.245	p.L82fs	1.000	NULL	NULL	-	no_errors	KANSL1L	HGNC	ENSG00000144445				128	0	0	159	35	18.0412
TRIP12	0	genome.wustl.edu	37	2	230724115	230724116	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	2	230724115	230724116	-	T	INS	TRIP12	ENST00000283943	human	ensembl	74_37	-1	known	frame_shift_ins	c.274_273	p.P91fs	1.000:1.000	NULL	pfam_HECT,superfamily_HECT,superfamily_ARM-type_fold,smart_HECT,pfscan_HECT,pfscan_WWE-dom	-	no_errors	TRIP12	HGNC	ENSG00000153827				289	0	0	294	67	18.5596
ITSN2	0	genome.wustl.edu	37	2	24494722	24494722	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	2	24494722	24494722	T	-	DEL	ITSN2	ENST00000355123	human	ensembl	74_37	-1	known	frame_shift_del	c.2170	p.T724fs	0.120	NULL	pfam_SH3_domain,pfam_SH3_2,pfam_DH-domain,pfam_C2_dom,superfamily_DH-domain,superfamily_C2_dom,superfamily_SH3_domain,smart_EPS15_homology,smart_EF_hand_dom,smart_SH3_domain,smart_DH-domain,smart_Pleckstrin_homology,smart_C2_dom,pfscan_EF_hand_dom,pfscan_EPS15_homology,pfscan_C2_dom,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_DH-domain,prints_SH3_domain,prints_p67phox	-	no_errors	ITSN2	HGNC	ENSG00000198399				152	0	0	171	27	13.6364
MAPRE3	0	genome.wustl.edu	37	2	27248517	27248517	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	2	27248517	27248517	C	-	DEL	MAPRE3	ENST00000233121	human	ensembl	74_37	+1	known	frame_shift_del	c.536	p.C182fs	1.000	NULL	pfam_EB1_C,pfam_CH-domain,superfamily_CH-domain,superfamily_EB1_C,pfscan_CH-domain	-	no_errors	MAPRE3	HGNC	ENSG00000084764				94	0	0	165	13	7.30337
CCDC88A	0	genome.wustl.edu	37	2	55561924	55561925	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	2	55561924	55561925	-	T	INS	CCDC88A	ENST00000436346	human	ensembl	74_37	-1	known	frame_shift_ins	c.2033_2032	p.T678fs	0.998:1.000	NULL	pfam_Hook-related_fam,superfamily_Prefoldin,superfamily_t-SNARE	-	no_errors	CCDC88A	HGNC	ENSG00000115355				51	0	0	48	11	18.6441
BCL11A	0	genome.wustl.edu	37	2	60687583	60687584	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	2	60687583	60687584	-	T	INS	BCL11A	ENST00000335712	human	ensembl	74_37	-1	known	frame_shift_ins	c.2464_2463	p.W821fs	1.000:1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	BCL11A	HGNC	ENSG00000119866				254	0	0	297	58	16.338
UGP2	0	genome.wustl.edu	37	2	64069278	64069281	+	RNA	DEL	AAAA	AAAA	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	AAAA	AAAA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	2	64069278	64069281	AAAA	-	DEL	UGP2	ENST00000484056	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.271:0.359:0.509:0.020	-	-	-	no_errors	UGP2	HGNC	ENSG00000169764				164	0	0	202	33	14.0426
ATP6V1B1	0	genome.wustl.edu	37	2	71191573	71191573	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	2	71191573	71191573	C	-	DEL	ATP6V1B1	ENST00000234396	human	ensembl	74_37	+1	known	frame_shift_del	c.1149	p.I386fs	0.999	pfam_ATPase_F1/V1/A1_a/bsu_nucl-bd,superfamily_P-loop_NTPase,tigrfam_ATPase_V1-cplx_bsu	pfam_ATPase_F1/V1/A1_a/bsu_nucl-bd,pfam_ATPase_F1/V1/A1-cplx_a/bsu_C,pfam_ATPase_F1_a/bsu_N,superfamily_P-loop_NTPase,superfamily_ATPase_F1_a/bsu_N,superfamily_ATPase_F1/V1/A1-cplx_a/bsu_C,tigrfam_ATPase_V1-cplx_bsu	-	no_errors	ATP6V1B1	HGNC	ENSG00000116039				142	1	0.699301	172	25	12.6904
MCEE	0	genome.wustl.edu	37	2	71337212	71337212	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	2	71337212	71337212	T	-	DEL	MCEE	ENST00000244217	human	ensembl	74_37	-1	known	frame_shift_del	c.419	p.K140fs	1.000	pfam_Glyas_Fos-R_dOase_dom,tigrfam_MeMalonyl-CoA_epimerase	pfam_Glyas_Fos-R_dOase_dom,tigrfam_MeMalonyl-CoA_epimerase	-	no_errors	MCEE	HGNC	ENSG00000124370				61	0	0	77	12	13.4831
KIDINS220	0	genome.wustl.edu	37	2	8926139	8926140	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	2	8926139	8926140	-	T	INS	KIDINS220	ENST00000256707	human	ensembl	74_37	-1	known	frame_shift_ins	c.1961_1960	p.T654fs	1.000:1.000	pfam_KAP_NTPase	pfam_KAP_NTPase,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,superfamily_SAM/pointed,superfamily_P-loop_NTPase,smart_Ankyrin_rpt,prints_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	KIDINS220	HGNC	ENSG00000134313				96	0	0	109	18	14.1732
ZNF514	0	genome.wustl.edu	37	2	95815035	95815035	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	2	95815035	95815035	T	-	DEL	ZNF514	ENST00000295208	human	ensembl	74_37	-1	known	frame_shift_del	c.1195	p.T399fs	0.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF514	HGNC	ENSG00000144026				154	0	0	175	27	13.3663
NCAPH	0	genome.wustl.edu	37	2	97025921	97025921	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	2	97025921	97025921	A	-	DEL	NCAPH	ENST00000240423	human	ensembl	74_37	+1	known	frame_shift_del	c.1398	p.D469fs	0.914	pfam_Condensin_barren_su2,pirsf_Condensin_barren_su2	pfam_Condensin_barren_su2,pirsf_Condensin_barren_su2	-	no_errors	NCAPH	HGNC	ENSG00000121152				58	0	0	67	12	15.1899
MACROD2	0	genome.wustl.edu	37	20	14830777	14830777	+	RNA	DEL	G	G	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	20	14830777	14830777	G	-	DEL	MACROD2	ENST00000497992	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	MACROD2	HGNC	ENSG00000172264				23	0	0	26	4	13.3333
RALGAPA2	0	genome.wustl.edu	37	20	20501722	20501723	+	Frame_Shift_Ins	INS	-	-	CA			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	20	20501722	20501723	-	CA	INS	RALGAPA2	ENST00000202677	human	ensembl	74_37	-1	known	frame_shift_ins	c.3923_3922	p.G1308fs	1.000:1.000	superfamily_ARM-type_fold	pfam_Rap_GAP_dom,superfamily_ARM-type_fold,pfscan_Rap_GAP_dom	-	no_errors	RALGAPA2	HGNC	ENSG00000188559				163	0	0	169	22	11.5183
CD93	0	genome.wustl.edu	37	20	23065887	23065887	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	20	23065887	23065887	C	-	DEL	CD93	ENST00000246006	human	ensembl	74_37	-1	known	frame_shift_del	c.943	p.A315fs	0.011	pirsf_CD93/CD141,pfam_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom	pirsf_CD93/CD141,pfam_EGF-like_Ca-bd_dom,pfam_EG-like_dom,pfam_C-type_lectin,superfamily_C-type_lectin_fold,superfamily_MFS_dom_general_subst_transpt,smart_C-type_lectin,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom,pfscan_C-type_lectin	-	no_errors	CD93	HGNC	ENSG00000125810				152	0	0	158	38	19.3878
HM13	0	genome.wustl.edu	37	20	30142485	30142485	+	RNA	DEL	A	A	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	20	30142485	30142485	A	-	DEL	HM13	ENST00000474466	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.172	-	-	-	no_errors	HM13	HGNC	ENSG00000101294				22	0	0	27	14	34.1463
PDRG1	0	genome.wustl.edu	37	20	30533657	30533657	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	20	30533657	30533657	G	-	DEL	PDRG1	ENST00000202017	human	ensembl	74_37	-1	known	frame_shift_del	c.355	p.L119fs	1.000	NULL	pfam_PFD_beta-like,superfamily_Prefoldin	-	no_errors	PDRG1	HGNC	ENSG00000088356				50	0	0	61	14	18.6667
RNF24	0	genome.wustl.edu	37	20	3914747	3914747	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	20	3914747	3914747	G	-	DEL	RNF24	ENST00000432261	human	ensembl	74_37	-1	known	frame_shift_del	c.473	p.P158fs	0.977	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING-CH,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF24	HGNC	ENSG00000101236				223	0	0	270	36	11.7647
ZHX3	0	genome.wustl.edu	37	20	39832436	39832436	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	20	39832436	39832436	T	-	DEL	ZHX3	ENST00000309060	human	ensembl	74_37	-1	known	frame_shift_del	c.1121	p.K374fs	1.000	superfamily_Homeodomain-like	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeobox_dom,pfscan_Homeobox_dom	-	no_errors	ZHX3	HGNC	ENSG00000174306				114	0	0	157	28	15.1351
WISP2	0	genome.wustl.edu	37	20	43348726	43348727	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	20	43348726	43348727	-	C	INS	WISP2	ENST00000190983	human	ensembl	74_37	+1	known	frame_shift_ins	c.249_250	p.G84fs	0.001:0.006	smart_IGFBP-like	pfam_IGFBP-like,pfam_VWF_C,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_IGFBP-like,smart_VWF_C,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt,pfscan_VWF_C	-	no_errors	WISP2	HGNC	ENSG00000064205				14	0	0	27	3	10
ZNF335	0	genome.wustl.edu	37	20	44597039	44597039	+	RNA	DEL	G	G	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	20	44597039	44597039	G	-	DEL	ZNF335	ENST00000494955	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.005	-	-	-	no_errors	ZNF335	HGNC	ENSG00000198026				103	0	0	118	18	13.2353
SLC35C2	0	genome.wustl.edu	37	20	44987182	44987182	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	20	44987182	44987182	G	-	DEL	SLC35C2	ENST00000543605	human	ensembl	74_37	-1	known	frame_shift_del	c.51	p.A18fs	0.019	NULL	pfam_Tpt_PEP_trans_dom,pfam_UAA	-	no_errors	SLC35C2	HGNC	ENSG00000080189				45	0	0	51	4	7.27273
ADNP	0	genome.wustl.edu	37	20	49508204	49508204	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	20	49508204	49508204	T	-	DEL	ADNP	ENST00000349014	human	ensembl	74_37	-1	known	frame_shift_del	c.3047	p.K1016fs	1.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	ADNP	HGNC	ENSG00000101126				212	1	0.469484	222	38	14.6154
ZFP64	0	genome.wustl.edu	37	20	50705581	50705581	+	RNA	DEL	C	C	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	20	50705581	50705581	C	-	DEL	ZFP64	ENST00000477786	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.015	-	-	-	no_errors	ZFP64	HGNC	ENSG00000020256				65	0	0	67	13	16.25
PMEPA1	0	genome.wustl.edu	37	20	56227349	56227349	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	20	56227349	56227349	G	-	DEL	PMEPA1	ENST00000341744	human	ensembl	74_37	-1	known	frame_shift_del	c.624	p.S209fs	0.979	NULL	NULL	-	no_errors	PMEPA1	HGNC	ENSG00000124225				72	0	0	67	14	17.284
SYCP2	0	genome.wustl.edu	37	20	58490593	58490593	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	20	58490593	58490593	T	-	DEL	SYCP2	ENST00000357552	human	ensembl	74_37	-1	known	frame_shift_del	c.526	p.M176fs	1.000	NULL	NULL	-	no_errors	SYCP2	HGNC	ENSG00000196074				110	0	0	132	16	10.8108
ZGPAT	0	genome.wustl.edu	37	20	62365018	62365019	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	20	62365018	62365019	-	C	INS	ZGPAT	ENST00000328969	human	ensembl	74_37	+1	known	frame_shift_ins	c.798_799	p.L268fs	0.982:1.000	NULL	pfam_G_patch_dom,smart_Znf_CCCH,smart_G_patch_dom,pfscan_G_patch_dom	-	no_errors	ZGPAT	HGNC	ENSG00000197114				245	0	0	304	44	12.6437
ZBTB46	0	genome.wustl.edu	37	20	62407045	62407046	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	20	62407045	62407046	-	C	INS	ZBTB46	ENST00000245663	human	ensembl	74_37	-1	known	frame_shift_ins	c.1208_1207	p.A403fs	0.769:0.756	NULL	pfam_BTB_POZ,pfam_DUF3342,pfam_Znf_C2H2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB46	HGNC	ENSG00000130584				84	0	0	163	35	17.6768
ANKRD20A11P	0	genome.wustl.edu	37	21	15311686	15311686	+	RNA	DEL	T	T	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	21	15311686	15311686	T	-	DEL	ANKRD20A11P	ENST00000428576	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.011	-	-	-	no_errors	ANKRD20A11P	HGNC	ENSG00000215559				20	0	0	18	8	30.7692
ZBTB21	0	genome.wustl.edu	37	21	43411514	43411514	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	21	43411514	43411514	G	-	DEL	ZBTB21	ENST00000310826	human	ensembl	74_37	-1	known	frame_shift_del	c.2691	p.E899fs	0.000	NULL	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB21	HGNC	ENSG00000173276				136	0	0	167	28	14.359
TRPM2	0	genome.wustl.edu	37	21	45786736	45786736	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	21	45786736	45786736	G	-	DEL	TRPM2	ENST00000300482	human	ensembl	74_37	+1	known	frame_shift_del	c.523	p.A177fs	0.996	NULL	pfam_Ion_trans_dom,superfamily_NUDIX_hydrolase_dom-like	-	no_errors	TRPM2	HGNC	ENSG00000142185				106	0	0	138	14	9.21053
HIC2	0	genome.wustl.edu	37	22	21799659	21799659	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	22	21799659	21799659	C	-	DEL	HIC2	ENST00000407464	human	ensembl	74_37	+1	known	frame_shift_del	c.475	p.R161fs	0.907	NULL	pfam_BTB_POZ,pfam_Znf_C2H2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	HIC2	HGNC	ENSG00000169635				20	0	0	32	4	11.1111
HIC2	0	genome.wustl.edu	37	22	21799865	21799865	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	22	21799865	21799865	G	-	DEL	HIC2	ENST00000407464	human	ensembl	74_37	+1	known	frame_shift_del	c.681	p.G229fs	0.517	NULL	pfam_BTB_POZ,pfam_Znf_C2H2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	HIC2	HGNC	ENSG00000169635				42	0	0	36	6	14.2857
SYN3	0	genome.wustl.edu	37	22	33402468	33402468	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	22	33402468	33402468	A	-	DEL	SYN3	ENST00000332840	human	ensembl	74_37	-1	known	frame_shift_del	c.180	p.F60fs	0.999	NULL	pfam_Synapsin_ATP-bd_dom,pfam_Synapsin_pre-ATP-grasp_dom,pfam_Synapsin_P_site,pfam_ATP-grasp_RimK-type,superfamily_PreATP-grasp_dom,prints_Synapsin	-	no_errors	SYN3	HGNC	ENSG00000185666				168	0	0	206	41	16.5992
DMC1	0	genome.wustl.edu	37	22	38934340	38934340	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	22	38934340	38934340	T	-	DEL	DMC1	ENST00000216024	human	ensembl	74_37	-1	known	frame_shift_del	c.735	p.K245fs	0.999	pfam_DNA_recomb/repair_Rad51_C,pfam_DNA_recomb/repair_RecA,pfam_Circ_KaiC/RadA,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pirsf_DNA_recomb/repair_RecA-like,pfscan_DNA_recomb_RecA/RadB_ATP-bd,tigrfam_DMC1_rcmbase	pfam_DNA_recomb/repair_Rad51_C,pfam_DNA_recomb/repair_RecA,pfam_Circ_KaiC/RadA,superfamily_P-loop_NTPase,superfamily_DNA_repair_Rad51/TF_NusA_a-hlx,smart_AAA+_ATPase,pirsf_DNA_recomb/repair_RecA-like,pfscan_DNA_recomb_RecA/RadB_ATP-bd,pfscan_RecA_monomer-monomer_interface,tigrfam_DMC1_rcmbase	-	no_errors	DMC1	HGNC	ENSG00000100206				68	0	0	103	21	16.9355
MIR1249	0	genome.wustl.edu	37	22	45596846	45596846	+	RNA	DEL	G	G	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	22	45596846	45596846	G	-	DEL	MIR1249	ENST00000408671	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	MIR1249	HGNC	ENSG00000221598				10	0	0	19	4	17.3913
PPP6R2	0	genome.wustl.edu	37	22	50879331	50879331	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	22	50879331	50879331	G	-	DEL	PPP6R2	ENST00000216061	human	ensembl	74_37	+1	known	frame_shift_del	c.2476	p.G827fs	0.986	NULL	pfam_SAPS,superfamily_ARM-type_fold	-	no_errors	PPP6R2	HGNC	ENSG00000100239				110	0	0	182	21	10.3448
SBF1	0	genome.wustl.edu	37	22	50900780	50900782	+	In_Frame_Del	DEL	CTC	CTC	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	CTC	CTC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	22	50900780	50900782	CTC	-	DEL	SBF1	ENST00000380817	human	ensembl	74_37	-1	known	in_frame_del	c.2250_2248	p.E750in_frame_del	1.000:1.000:1.000	pfam_SBF2	pfam_SBF2,pfam_DENN_dom,pfam_uDENN_dom,pfam_Myotubularin-like_Pase_dom,pfam_dDENN_dom,pfam_GRAM,pfam_Pleckstrin_homology,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,smart_GRAM,smart_Pleckstrin_homology,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom,pfscan_Pleckstrin_homology	-	no_errors	SBF1	HGNC	ENSG00000100241				97	0	0	128	28	17.9487
PCNP	0	genome.wustl.edu	37	3	101311692	101311692	+	RNA	DEL	T	T	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	3	101311692	101311692	T	-	DEL	PCNP	ENST00000486406	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.864	-	-	-	no_errors	PCNP	HGNC	ENSG00000081154				28	0	0	42	6	12.5
MYH15	0	genome.wustl.edu	37	3	108172981	108172981	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	3	108172981	108172981	A	-	DEL	MYH15	ENST00000273353	human	ensembl	74_37	-1	known	frame_shift_del	c.2331	p.F777fs	0.927	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,superfamily_Lambda_DNA-bd_dom,smart_Myosin_head_motor_dom,prints_Myosin_head_motor_dom	-	no_errors	MYH15	HGNC	ENSG00000144821				142	0	0	139	21	13.125
CCDC37	0	genome.wustl.edu	37	3	126142182	126142183	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	3	126142182	126142183	-	C	INS	CCDC37	ENST00000393425	human	ensembl	74_37	+1	known	frame_shift_ins	c.1100_1101	p.T370fs	0.000:0.000	NULL	superfamily_SuperAg_toxin_C	-	no_errors	CCDC37	HGNC	ENSG00000163885				50	0	0	69	7	9.21053
SLC35G2	0	genome.wustl.edu	37	3	136573486	136573487	+	Frame_Shift_Del	DEL	AA	AA	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	3	136573486	136573487	AA	-	DEL	SLC35G2	ENST00000393079	human	ensembl	74_37	+1	known	frame_shift_del	c.184_185	p.K64fs	1.000:1.000	NULL	pfam_DMT	-	no_errors	SLC35G2	HGNC	ENSG00000168917				203	0	0	268	53	16.5109
PLOD2	0	genome.wustl.edu	37	3	145828190	145828190	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	3	145828190	145828190	T	-	DEL	PLOD2	ENST00000282903	human	ensembl	74_37	-1	known	frame_shift_del	c.384	p.K128fs	1.000	NULL	pfam_Oxoglu/Fe-dep_dioxygenase,smart_Pro_4_hyd_alph	-	no_errors	PLOD2	HGNC	ENSG00000152952				120	0	0	136	26	16.0494
GYG1	0	genome.wustl.edu	37	3	148727089	148727089	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	3	148727089	148727089	T	-	DEL	GYG1	ENST00000345003	human	ensembl	74_37	+1	known	frame_shift_del	c.508	p.F171fs	0.999	pfam_Glyco_trans_8	pfam_Glyco_trans_8	-	no_errors	GYG1	HGNC	ENSG00000163754				241	0	0	285	62	17.8674
AHSG	0	genome.wustl.edu	37	3	186338453	186338454	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	3	186338453	186338454	-	C	INS	AHSG	ENST00000411641	human	ensembl	74_37	+1	known	frame_shift_ins	c.838_839	p.P282fs	0.000:0.002	NULL	pfam_Prot_inh_cystat,smart_Prot_inh_cystat	-	no_errors	AHSG	HGNC	ENSG00000145192				313	1	0.318471	397	79	16.5966
FETUB	0	genome.wustl.edu	37	3	186362544	186362544	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	3	186362544	186362544	A	-	DEL	FETUB	ENST00000265029	human	ensembl	74_37	+1	known	frame_shift_del	c.429	p.K146fs	0.854	NULL	pfam_Prot_inh_cystat,smart_Prot_inh_cystat	-	no_errors	FETUB	HGNC	ENSG00000090512				216	0	0	227	40	14.9813
CLDN1	0	genome.wustl.edu	37	3	190039795	190039796	+	Frame_Shift_Del	DEL	AA	AA	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	3	190039795	190039796	AA	-	DEL	CLDN1	ENST00000295522	human	ensembl	74_37	-1	known	frame_shift_del	c.201_200	p.F67fs	1.000:1.000	pfam_PMP22/EMP/MP20/Claudin,prints_Claudin14	pfam_PMP22/EMP/MP20/Claudin,prints_Claudin,prints_Claudin1,prints_Claudin14	-	no_errors	CLDN1	HGNC	ENSG00000163347				137	1	0.724638	192	33	14.6667
UTS2B	0	genome.wustl.edu	37	3	190999982	190999982	+	RNA	DEL	A	A	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	3	190999982	190999982	A	-	DEL	UTS2B	ENST00000463450	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.384	-	-	-	no_errors	UTS2B	HGNC	ENSG00000188958				43	0	0	51	12	19.0476
UBXN7	0	genome.wustl.edu	37	3	196096324	196096324	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	3	196096324	196096324	A	-	DEL	UBXN7	ENST00000296328	human	ensembl	74_37	-1	known	frame_shift_del	c.674	p.F225fs	1.000	smart_UAS,pirsf_UCP037991_UAS/UBX	pfam_UBX,superfamily_UBA-like,smart_UAS,smart_UBX,pirsf_UCP037991_UAS/UBX,pfscan_UBX	-	no_errors	UBXN7	HGNC	ENSG00000163960				136	0	0	145	26	15.2047
PIGZ	0	genome.wustl.edu	37	3	196674300	196674301	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	3	196674300	196674301	-	C	INS	PIGZ	ENST00000412723	human	ensembl	74_37	-1	known	frame_shift_ins	c.1468_1467	p.T489fs	0.013:0.922	NULL	pfam_GPI_mannosylTrfase	-	no_errors	PIGZ	HGNC	ENSG00000119227				112	0	0	134	30	18.2927
ENSG00000232783	0	genome.wustl.edu	37	3	197838274	197838275	+	RNA	DEL	AA	AA	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	3	197838274	197838275	AA	-	DEL	ENSG00000232783	ENST00000411596	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001:0.001	-	-	-	no_errors	AC073135.3	Clone_based_vega_gene	ENSG00000232783				30	0	0	34	7	17.0732
HMGB1P5	0	genome.wustl.edu	37	3	22424080	22424081	+	RNA	INS	-	-	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	3	22424080	22424081	-	T	INS	HMGB1P5	ENST00000451497	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000:1.000	-	-	-	no_errors	HMGB1P5	HGNC	ENSG00000132967				22	0	0	33	5	13.1579
GLB1	0	genome.wustl.edu	37	3	33038565	33038565	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	3	33038565	33038565	T	-	DEL	GLB1	ENST00000445488	human	ensembl	74_37	-1	known	frame_shift_del	c.2150	p.N717fs	0.000	NULL	pfam_Glycoside_Hdrlase_35,pfam_Glyco_hydro_42_N,superfamily_Glycoside_hydrolase_SF,superfamily_Galactose-bd-like,prints_Glycoside_Hdrlase_35	-	no_errors	GLB1	HGNC	ENSG00000170266				198	1	0.502513	210	29	12.1339
SCAP	0	genome.wustl.edu	37	3	47459204	47459204	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	3	47459204	47459204	G	-	DEL	SCAP	ENST00000265565	human	ensembl	74_37	-1	known	frame_shift_del	c.2560	p.L854fs	0.921	NULL	pfam_Patched,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_SSD,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	SCAP	HGNC	ENSG00000114650				22	0	0	34	15	30.6122
NCKIPSD	0	genome.wustl.edu	37	3	48718986	48718988	+	In_Frame_Del	DEL	CTT	CTT	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	CTT	CTT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	3	48718986	48718988	CTT	-	DEL	NCKIPSD	ENST00000294129	human	ensembl	74_37	-1	known	in_frame_del	c.826_824	p.E275in_frame_del	0.004:0.072:0.141	NULL	pfam_DUF2013,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	NCKIPSD	HGNC	ENSG00000213672				98	0	0	139	18	11.465
ENSG00000271976	0	genome.wustl.edu	37	3	53894043	53894043	+	RNA	DEL	A	A	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	3	53894043	53894043	A	-	DEL	ENSG00000271976	ENST00000607783	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	RP11-884K10.7	Clone_based_vega_gene	ENSG00000271976				32	0	0	46	12	20.6897
CCDC66	0	genome.wustl.edu	37	3	56651482	56651482	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	3	56651482	56651482	A	-	DEL	CCDC66	ENST00000394672	human	ensembl	74_37	+1	known	frame_shift_del	c.2186	p.V732fs	1.000	NULL	NULL	-	no_errors	CCDC66	HGNC	ENSG00000180376				50	0	0	76	11	12.6437
COL8A1	0	genome.wustl.edu	37	3	99514534	99514534	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	3	99514534	99514534	C	-	DEL	COL8A1	ENST00000261037	human	ensembl	74_37	+1	known	frame_shift_del	c.1789	p.H599fs	0.314	NULL	pfam_Collagen,pfam_C1q,superfamily_Tumour_necrosis_fac-like_dom,smart_C1q,pfscan_C1q,prints_C1q	-	no_errors	COL8A1	HGNC	ENSG00000144810				87	0	0	104	19	15.4472
SEC24D	0	genome.wustl.edu	37	4	119674003	119674004	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	4	119674003	119674004	-	A	INS	SEC24D	ENST00000379735	human	ensembl	74_37	-1	known	frame_shift_ins	c.1465_1464	p.I488fs	1.000:0.974	pfam_Sec23/24_trunk_dom	pfam_Sec23/24_trunk_dom,pfam_Sec23/24_helical_dom,pfam_Sec23_24_beta_S,pfam_Znf_Sec23_Sec24,pfam_Gelsolin_dom,superfamily_Sec23/24_helical_dom	-	no_errors	SEC24D	HGNC	ENSG00000150961				104	0	0	147	27	15.5172
USP53	0	genome.wustl.edu	37	4	120182871	120182871	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	4	120182871	120182871	T	-	DEL	USP53	ENST00000274030	human	ensembl	74_37	+1	known	frame_shift_del	c.824	p.Y277fs	1.000	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	-	no_errors	USP53	HGNC	ENSG00000145390				75	0	0	67	17	20.2381
KIAA1109	0	genome.wustl.edu	37	4	123202735	123202735	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	4	123202735	123202735	A	-	DEL	KIAA1109	ENST00000264501	human	ensembl	74_37	+1	known	frame_shift_del	c.8843	p.T2950fs	1.000	NULL	pfam_Fragile_site-assoc_C	-	no_errors	KIAA1109	HGNC	ENSG00000138688				99	0	0	116	22	15.942
PROM1	0	genome.wustl.edu	37	4	15995679	15995680	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	4	15995679	15995680	-	T	INS	PROM1	ENST00000447510	human	ensembl	74_37	-1	known	frame_shift_ins	c.1698_1697	p.N566fs	0.395:0.415	pfam_Prominin	pfam_Prominin	-	no_errors	PROM1	HGNC	ENSG00000007062				180	0	0	177	32	15.311
TACC3	0	genome.wustl.edu	37	4	1730307	1730308	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	4	1730307	1730308	-	C	INS	TACC3	ENST00000313288	human	ensembl	74_37	+1	known	frame_shift_ins	c.1178_1179	p.M396fs	0.001:0.000	NULL	pfam_TACC	-	no_errors	TACC3	HGNC	ENSG00000013810				102	0	0	159	24	13.1148
SORBS2	0	genome.wustl.edu	37	4	186578685	186578685	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	4	186578685	186578685	G	-	DEL	SORBS2	ENST00000284776	human	ensembl	74_37	-1	known	frame_shift_del	c.160	p.L54fs	0.996	NULL	pfam_SH3_domain,pfam_SH3_2,pfam_Sorb,superfamily_SH3_domain,smart_Sorb,smart_SH3_domain,pfscan_Sorb,pfscan_SH3_domain,prints_SH3_domain,prints_p67phox	-	no_errors	SORBS2	HGNC	ENSG00000154556				89	0	0	95	22	18.8034
NOP14	0	genome.wustl.edu	37	4	2958520	2958520	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	4	2958520	2958520	T	-	DEL	NOP14	ENST00000416614	human	ensembl	74_37	-1	known	frame_shift_del	c.349	p.S117fs	1.000	pfam_Nop14	pfam_Nop14	-	no_errors	NOP14	HGNC	ENSG00000087269				81	0	0	91	9	9
RGS12	0	genome.wustl.edu	37	4	3418813	3418813	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	4	3418813	3418813	A	-	DEL	RGS12	ENST00000344733	human	ensembl	74_37	+1	known	frame_shift_del	c.2601	p.K869fs	0.018	NULL	pfam_Raf-like_ras-bd,pfam_RGS_dom,pfam_PDZ,pfam_GoLoco_motif,superfamily_Regulat_G_prot_signal_superfam,superfamily_PDZ,smart_PDZ,smart_PTB/PI_dom,smart_Regulat_G_prot_signal_superfam,smart_Raf-like_ras-bd,smart_GoLoco_motif,pfscan_GoLoco_motif,pfscan_PDZ,pfscan_PTB/PI_dom,pfscan_Raf-like_ras-bd,pfscan_Regulat_G_prot_signal_superfam,prints_RGS_dom	-	no_errors	RGS12	HGNC	ENSG00000159788				42	0	0	80	11	12.0879
RGS12	0	genome.wustl.edu	37	4	3430399	3430399	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	4	3430399	3430399	A	-	DEL	RGS12	ENST00000344733	human	ensembl	74_37	+1	known	frame_shift_del	c.3526	p.K1178fs	1.000	NULL	pfam_Raf-like_ras-bd,pfam_RGS_dom,pfam_PDZ,pfam_GoLoco_motif,superfamily_Regulat_G_prot_signal_superfam,superfamily_PDZ,smart_PDZ,smart_PTB/PI_dom,smart_Regulat_G_prot_signal_superfam,smart_Raf-like_ras-bd,smart_GoLoco_motif,pfscan_GoLoco_motif,pfscan_PDZ,pfscan_PTB/PI_dom,pfscan_Raf-like_ras-bd,pfscan_Regulat_G_prot_signal_superfam,prints_RGS_dom	-	no_errors	RGS12	HGNC	ENSG00000159788				107	0	0	113	34	23.1293
RGS12	0	genome.wustl.edu	37	4	3432431	3432431	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	4	3432431	3432431	C	-	DEL	RGS12	ENST00000344733	human	ensembl	74_37	+1	known	frame_shift_del	c.3863	p.1292fs	0.000	NULL	pfam_Raf-like_ras-bd,pfam_RGS_dom,pfam_PDZ,pfam_GoLoco_motif,superfamily_Regulat_G_prot_signal_superfam,superfamily_PDZ,smart_PDZ,smart_PTB/PI_dom,smart_Regulat_G_prot_signal_superfam,smart_Raf-like_ras-bd,smart_GoLoco_motif,pfscan_GoLoco_motif,pfscan_PDZ,pfscan_PTB/PI_dom,pfscan_Raf-like_ras-bd,pfscan_Regulat_G_prot_signal_superfam,prints_RGS_dom	-	no_errors	RGS12	HGNC	ENSG00000159788				20	0	0	31	2	6.06061
APBB2	0	genome.wustl.edu	37	4	41015658	41015660	+	In_Frame_Del	DEL	CTC	CTC	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	CTC	CTC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	4	41015658	41015660	CTC	-	DEL	APBB2	ENST00000295974	human	ensembl	74_37	-1	known	in_frame_del	c.777_775	p.E259in_frame_del	1.000:1.000:1.000	NULL	pfam_PTB/PI_dom,pfam_WW_dom,superfamily_WW_dom,smart_WW_dom,smart_PTB/PI_dom,pfscan_PTB/PI_dom,pfscan_WW_dom	-	no_errors	APBB2	HGNC	ENSG00000163697				507	1	0.19685	531	107	16.7712
AASDH	0	genome.wustl.edu	37	4	57220269	57220270	+	Frame_Shift_Del	DEL	AA	AA	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	4	57220269	57220270	AA	-	DEL	AASDH	ENST00000205214	human	ensembl	74_37	-1	known	frame_shift_del	c.1319_1318	p.L440fs	1.000:0.990	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig,pfam_Acyl_carrier_prot-like,superfamily_Quinonprotein_ADH-like_supfam,superfamily_Acyl_carrier_prot-like,smart_PQQ_beta_propeller_repeat,pfscan_Acyl_carrier_prot-like	-	no_errors	AASDH	HGNC	ENSG00000157426				132	0	0	124	38	23.4568
CENPC	0	genome.wustl.edu	37	4	68384936	68384936	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	4	68384936	68384936	T	-	DEL	CENPC	ENST00000273853	human	ensembl	74_37	-1	known	frame_shift_del	c.616	p.R206fs	1.000	NULL	pfam_Mif2/CENP-C_cupin,pfam_Cupin_2,superfamily_RmlC_Cupin	-	no_errors	CENPC	HGNC	ENSG00000145241				59	0	0	69	15	17.8571
ENAM	0	genome.wustl.edu	37	4	71503554	71503555	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	4	71503554	71503555	-	G	INS	ENAM	ENST00000396073	human	ensembl	74_37	+1	known	frame_shift_ins	c.582_583	p.N196fs	0.996:0.994	NULL	NULL	-	no_errors	ENAM	HGNC	ENSG00000132464				177	1	0.561798	166	16	8.79121
ARHGAP24	0	genome.wustl.edu	37	4	86916593	86916593	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	4	86916593	86916593	C	-	DEL	ARHGAP24	ENST00000395184	human	ensembl	74_37	+1	known	frame_shift_del	c.1786	p.P597fs	0.976	NULL	pfam_RhoGAP_dom,pfam_Pleckstrin_homology,superfamily_Rho_GTPase_activation_prot,smart_Pleckstrin_homology,smart_RhoGAP_dom,pfscan_Pleckstrin_homology,pfscan_RhoGAP_dom	-	no_errors	ARHGAP24	HGNC	ENSG00000138639				112	0	0	161	24	12.973
GRID2	0	genome.wustl.edu	37	4	93225753	93225754	+	RNA	DEL	AA	AA	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	4	93225753	93225754	AA	-	DEL	GRID2	ENST00000505687	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	GRID2	HGNC	ENSG00000152208				35	0	0	32	10	23.8095
SMARCAD1	0	genome.wustl.edu	37	4	95173910	95173910	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	4	95173910	95173910	A	-	DEL	SMARCAD1	ENST00000359052	human	ensembl	74_37	+1	known	frame_shift_del	c.1033	p.N347fs	1.000	NULL	pfam_SNF2_N,pfam_Helicase_C,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,superfamily_UBA-like,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_CUE,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	SMARCAD1	HGNC	ENSG00000163104				52	0	0	66	11	14.2857
PAM	0	genome.wustl.edu	37	5	102338844	102338845	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	5	102338844	102338845	-	A	INS	PAM	ENST00000304400	human	ensembl	74_37	+1	known	frame_shift_ins	c.1721_1722	p.N576fs	1.000:0.180	pfscan_NHL_repeat_subgr	pfam_NHL_repeat,pfam_Cu2_ascorb_mOase_N,superfamily_PHM/PNGase_F_dom,pfscan_NHL_repeat_subgr,prints_Pep_amidat_mOase	-	no_errors	PAM	HGNC	ENSG00000145730				64	0	0	64	7	9.85915
ZNF608	0	genome.wustl.edu	37	5	123980122	123980122	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	5	123980122	123980122	T	-	DEL	ZNF608	ENST00000306315	human	ensembl	74_37	-1	known	frame_shift_del	c.3938	p.N1313fs	0.806	NULL	NULL	-	no_errors	ZNF608	HGNC	ENSG00000168916				410	0	0	494	95	16.129
FNIP1	0	genome.wustl.edu	37	5	131039814	131039814	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	5	131039814	131039814	A	-	DEL	FNIP1	ENST00000510461	human	ensembl	74_37	-1	known	frame_shift_del	c.1060	p.S354fs	1.000	NULL	NULL	-	no_errors	FNIP1	HGNC	ENSG00000217128				82	0	0	112	18	13.8462
WDR55	0	genome.wustl.edu	37	5	140049102	140049102	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	5	140049102	140049102	A	-	DEL	WDR55	ENST00000358337	human	ensembl	74_37	+1	known	frame_shift_del	c.1015	p.K341fs	1.000	pirsf_WD_repeat_p55	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pirsf_WD_repeat_p55,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR55	HGNC	ENSG00000120314				35	0	0	72	13	15.2941
TCERG1	0	genome.wustl.edu	37	5	145886723	145886723	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	5	145886723	145886723	A	-	DEL	TCERG1	ENST00000296702	human	ensembl	74_37	+1	known	frame_shift_del	c.2863	p.K957fs	1.000	pfam_FF_domain,superfamily_FF_domain,smart_FF_domain	pfam_FF_domain,pfam_WW_dom,superfamily_FF_domain,superfamily_WW_dom,smart_WW_dom,smart_FF_domain,pfscan_WW_dom	-	no_errors	TCERG1	HGNC	ENSG00000113649				200	1	0.497512	193	35	15.3509
ENSG00000253798	0	genome.wustl.edu	37	5	157116986	157116986	+	RNA	DEL	T	T	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	5	157116986	157116986	T	-	DEL	ENSG00000253798	ENST00000522076	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	AC008694.3	Clone_based_vega_gene	ENSG00000253798				146	0	0	167	34	16.9154
GABRB2	0	genome.wustl.edu	37	5	160753482	160753482	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	5	160753482	160753482	A	-	DEL	GABRB2	ENST00000274547	human	ensembl	74_37	-1	known	frame_shift_del	c.1084	p.Y362fs	1.000	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,tigrfam_Neur_channel	pfam_Neurotrans-gated_channel_TM,pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABAA_rcpt,prints_GABAAb_rcpt,prints_Neur_channel,prints_GABBAg_rcpt,prints_GABAAa_rcpt,tigrfam_Neur_channel	-	no_errors	GABRB2	HGNC	ENSG00000145864				81	0	0	78	17	17.8947
CDHR2	0	genome.wustl.edu	37	5	176017671	176017672	+	Frame_Shift_Ins	INS	-	-	GT			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	5	176017671	176017672	-	GT	INS	CDHR2	ENST00000261944	human	ensembl	74_37	+1	known	frame_shift_ins	c.3522_3523	p.R1177fs	0.000:0.003	NULL	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDHR2	HGNC	ENSG00000074276				164	0	0	202	36	15.1261
RICTOR	0	genome.wustl.edu	37	5	38959432	38959432	+	RNA	DEL	A	A	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	5	38959432	38959432	A	-	DEL	RICTOR	ENST00000503698	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.004	-	-	-	no_errors	RICTOR	HGNC	ENSG00000164327				34	0	0	18	5	21.7391
DHX29	0	genome.wustl.edu	37	5	54589966	54589966	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	5	54589966	54589966	T	-	DEL	DHX29	ENST00000251636	human	ensembl	74_37	-1	known	frame_shift_del	c.659	p.K220fs	1.000	NULL	pfam_Helicase-assoc_dom,pfam_DUF1605,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DHX29	HGNC	ENSG00000067248				52	0	0	60	12	16.6667
PLK2	0	genome.wustl.edu	37	5	57753011	57753012	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	5	57753011	57753012	-	A	INS	PLK2	ENST00000274289	human	ensembl	74_37	-1	known	frame_shift_ins	c.1005_1004	p.L335fs	1.000:1.000	superfamily_Kinase-like_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_POLO_box_duplicated_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_POLO_box_duplicated_dom,pfscan_Prot_kinase_dom	-	no_errors	PLK2	HGNC	ENSG00000145632				60	0	0	83	16	16.1616
SREK1	0	genome.wustl.edu	37	5	65449437	65449438	+	RNA	INS	-	-	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	5	65449437	65449438	-	T	INS	SREK1	ENST00000523851	human	ensembl	74_37	+1	putative	rna	NULL	NULL	0.000:0.932	-	-	-	no_errors	SREK1	HGNC	ENSG00000153914				470	0	0	499	70	12.3023
ATP6AP1L	0	genome.wustl.edu	37	5	81605853	81605853	+	RNA	DEL	A	A	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	5	81605853	81605853	A	-	DEL	ATP6AP1L	ENST00000508366	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ATP6AP1L	HGNC	ENSG00000205464				15	0	0	26	8	23.5294
GPR98	0	genome.wustl.edu	37	5	90124781	90124781	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	5	90124781	90124781	T	-	DEL	GPR98	ENST00000405460	human	ensembl	74_37	+1	known	frame_shift_del	c.16389	p.F5465fs	0.351	NULL	pfam_Calx_beta,pfam_EPTP,pfam_GPCR_2_secretin-like,pfam_GPS_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Gal_Oxase/kelch_b-propeller,smart_Calx_beta,pfscan_EAR,pfscan_GPS_dom,pfscan_GPCR_2-like	-	no_errors	GPR98	HGNC	ENSG00000164199				68	0	0	81	17	17.3469
GRIK2	0	genome.wustl.edu	37	6	102503432	102503432	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	6	102503432	102503432	A	-	DEL	GRIK2	ENST00000421544	human	ensembl	74_37	+1	known	frame_shift_del	c.2539	p.N849fs	1.000	NULL	pfam_ANF_lig-bd_rcpt,pfam_Iontro_glu_rcpt,pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,superfamily_Peripla_BP_I,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIK2	HGNC	ENSG00000164418				173	1	0.574713	237	27	10.2273
AIM1	0	genome.wustl.edu	37	6	106968459	106968461	+	In_Frame_Del	DEL	AAG	AAG	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	AAG	AAG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	6	106968459	106968461	AAG	-	DEL	AIM1	ENST00000369066	human	ensembl	74_37	+1	known	in_frame_del	c.2152_2154	p.K719in_frame_del	1.000:1.000:0.999	NULL	pfam_Beta/gamma_crystallin,pfam_Ricin_B_lectin,superfamily_G_crystallin-rel,superfamily_Ricin_B_lectin,smart_Beta/gamma_crystallin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin,pfscan_Beta/gamma_crystallin,prints_Beta/gamma_crystallin	-	no_errors	AIM1	HGNC	ENSG00000112297				142	0	0	161	26	13.9037
TMEM14B	0	genome.wustl.edu	37	6	10756864	10756864	+	RNA	DEL	A	A	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	6	10756864	10756864	A	-	DEL	TMEM14B	ENST00000486421	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.005	-	-	-	no_errors	TMEM14B	HGNC	ENSG00000137210				15	0	0	20	7	25.9259
SLC22A16	0	genome.wustl.edu	37	6	110763711	110763711	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	6	110763711	110763711	T	-	DEL	SLC22A16	ENST00000368919	human	ensembl	74_37	-1	known	frame_shift_del	c.919	p.I307fs	0.054	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC22A16	HGNC	ENSG00000004809				158	0	0	189	38	16.7401
LAMA4	0	genome.wustl.edu	37	6	112450166	112450166	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	6	112450166	112450166	T	-	DEL	LAMA4	ENST00000230538	human	ensembl	74_37	-1	known	frame_shift_del	c.4245	p.G1416fs	0.993	NULL	pfam_Laminin_G,pfam_Laminin_I,pfam_Laminin_II,pfam_EGF_laminin,superfamily_ConA-like_lec_gl_sf,superfamily_Focal_adhesion_kin_target_dom,smart_EGF_laminin,smart_EG-like_dom,smart_Laminin_G,pfscan_EGF_laminin,pfscan_Laminin_G	-	no_errors	LAMA4	HGNC	ENSG00000112769				104	0	0	114	25	17.9856
MED23	0	genome.wustl.edu	37	6	131917389	131917389	+	RNA	DEL	T	T	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	6	131917389	131917389	T	-	DEL	MED23	ENST00000479213	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	MED23	HGNC	ENSG00000112282				25	0	0	23	7	23.3333
PHACTR1	0	genome.wustl.edu	37	6	13206135	13206135	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	6	13206135	13206135	G	-	DEL	PHACTR1	ENST00000379350	human	ensembl	74_37	+1	known	frame_shift_del	c.753	p.P254fs	0.087	NULL	pfam_RPEL_repeat,smart_RPEL_repeat,pfscan_RPEL_repeat	-	no_errors	PHACTR1	HGNC	ENSG00000112137				112	0	0	155	13	7.7381
UTRN	0	genome.wustl.edu	37	6	144759980	144759980	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	6	144759980	144759980	C	-	DEL	UTRN	ENST00000367545	human	ensembl	74_37	+1	known	frame_shift_del	c.1341	p.L449fs	0.009	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin,pirsf_Dystrophin/utrophin	pfam_Spectrin_repeat,pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_CH-domain,pfam_Znf_ZZ,pfam_WW_dom,superfamily_CH-domain,superfamily_WW_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_WW_dom,smart_Znf_ZZ,pirsf_Dystrophin/utrophin,pfscan_CH-domain,pfscan_WW_dom,pfscan_Znf_ZZ	-	no_errors	UTRN	HGNC	ENSG00000152818				71	0	0	98	19	16.2393
UST	0	genome.wustl.edu	37	6	149395142	149395142	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	6	149395142	149395142	C	-	DEL	UST	ENST00000367463	human	ensembl	74_37	+1	known	frame_shift_del	c.1111	p.L373fs	0.580	NULL	pfam_Sulfotransferase,pfam_Gal-3-0_sulfotransfrase,superfamily_P-loop_NTPase	-	no_errors	UST	HGNC	ENSG00000111962				105	0	0	129	26	16.7742
ARID1B	0	genome.wustl.edu	37	6	157528284	157528284	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	6	157528284	157528284	G	-	DEL	ARID1B	ENST00000367148	human	ensembl	74_37	+1	known	frame_shift_del	c.6129	p.V2045fs	0.999	pfam_DUF3518	pfam_DUF3518,pfam_ARID/BRIGHT_DNA-bd,superfamily_ARID/BRIGHT_DNA-bd,superfamily_ARM-type_fold,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID1B	HGNC	ENSG00000049618				127	0	0	163	28	14.6597
SMOC2	0	genome.wustl.edu	37	6	169051445	169051447	+	In_Frame_Del	DEL	CCT	CCT	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	CCT	CCT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	6	169051445	169051447	CCT	-	DEL	SMOC2	ENST00000354536	human	ensembl	74_37	+1	known	in_frame_del	c.1025_1027	p.S346in_frame_del	1.000:0.932:0.940	pfam_SPARC/Testican_Ca-bd-dom	pfam_Thyroglobulin_1,pfam_SPARC/Testican_Ca-bd-dom,pfam_Kazal_dom,superfamily_Thyroglobulin_1,smart_Kazal_dom,smart_Thyroglobulin_1,pfscan_EF_hand_dom,pfscan_Thyroglobulin_1	-	no_errors	SMOC2	HGNC	ENSG00000112562				34	0	0	45	4	8.16327
PGBD1	0	genome.wustl.edu	37	6	28269913	28269913	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	6	28269913	28269913	T	-	DEL	PGBD1	ENST00000259883	human	ensembl	74_37	+1	known	frame_shift_del	c.2282	p.L762fs	0.227	NULL	pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,pfscan_SRCR,pfscan_Tscrpt_reg_SCAN	-	no_errors	PGBD1	HGNC	ENSG00000137338				79	0	0	100	18	15.2542
OR2J2	0	genome.wustl.edu	37	6	29142310	29142310	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	6	29142310	29142310	G	-	DEL	OR2J2	ENST00000377167	human	ensembl	74_37	+1	known	frame_shift_del	c.898	p.A301fs	0.207	NULL	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2J2	HGNC	ENSG00000204700				135	0	0	149	25	14.3678
HLA-A	0	genome.wustl.edu	37	6	29911900	29911900	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	6	29911900	29911900	C	-	DEL	HLA-A	ENST00000376806	human	ensembl	74_37	+1	known	frame_shift_del	c.621	p.K210fs	0.000	pfscan_Ig-like_dom	pfam_MHC_I_a_a1/a2,pfam_Ig_C1-set,pfam_MHC_I_a_C,superfamily_MHC_I/II-like_Ag-recog,smart_Ig_C1-set,pfscan_Ig-like_dom,prints_MHC_I_a	-	no_errors	HLA-A	HGNC	ENSG00000206503				249	1	0.4	312	49	13.5734
DDX39B	0	genome.wustl.edu	37	6	31504446	31504446	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	6	31504446	31504446	A	-	DEL	DDX39B	ENST00000417556	human	ensembl	74_37	-1	known	frame_shift_del	c.492	p.F164fs	1.000	pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX39B	HGNC	ENSG00000198563				76	0	0	80	11	12.0879
BAG6	0	genome.wustl.edu	37	6	31606863	31606863	+	RNA	DEL	G	G	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	6	31606863	31606863	G	-	DEL	BAG6	ENST00000464126	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.010	-	-	-	no_errors	BAG6	HGNC	ENSG00000204463				35	0	0	27	6	18.1818
SKIV2L	0	genome.wustl.edu	37	6	31934881	31934881	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	6	31934881	31934881	G	-	DEL	SKIV2L	ENST00000375394	human	ensembl	74_37	+1	known	frame_shift_del	c.2441	p.E816fs	1.000	pirsf_RNA_helicase_ATP-dep_SK12/DOB1	pfam_DSH_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pirsf_RNA_helicase_ATP-dep_SK12/DOB1,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	SKIV2L	HGNC	ENSG00000204351				188	0	0	197	28	12.4444
DXO	0	genome.wustl.edu	37	6	31939231	31939231	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	6	31939231	31939231	G	-	DEL	DXO	ENST00000337523	human	ensembl	74_37	-1	known	frame_shift_del	c.222	p.T75fs	0.007	NULL	pfam_RAI1	-	no_errors	DXO	HGNC	ENSG00000204348				104	0	0	128	29	18.4713
RING1	0	genome.wustl.edu	37	6	33178990	33178990	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	6	33178990	33178990	G	-	DEL	RING1	ENST00000374656	human	ensembl	74_37	+1	known	frame_shift_del	c.511	p.E173fs	1.000	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RING1	HGNC	ENSG00000204227				380	0	0	398	43	9.75057
KCNK17	0	genome.wustl.edu	37	6	39272281	39272281	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	6	39272281	39272281	C	-	DEL	KCNK17	ENST00000373231	human	ensembl	74_37	-1	known	frame_shift_del	c.503	p.G168fs	0.001	pirsf_2pore_dom_K_chnl_TASK	pfam_2pore_dom_K_chnl_dom,pirsf_2pore_dom_K_chnl_TASK,prints_2pore_dom_K_chnl,prints_2pore_dom_K_chnl_TASK	-	no_errors	KCNK17	HGNC	ENSG00000124780				161	0	0	189	26	12.093
BYSL	0	genome.wustl.edu	37	6	41889330	41889330	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	6	41889330	41889330	G	-	DEL	BYSL	ENST00000230340	human	ensembl	74_37	+1	known	frame_shift_del	c.30	p.G12fs	0.110	NULL	pfam_Bystin	-	no_errors	BYSL	HGNC	ENSG00000112578				46	0	0	75	11	12.7907
BMP5	0	genome.wustl.edu	37	6	55625309	55625309	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	6	55625309	55625309	T	-	DEL	BMP5	ENST00000370830	human	ensembl	74_37	-1	known	frame_shift_del	c.1050	p.K350fs	1.000	NULL	pfam_TGF-b_N,pfam_TGF-b_C,smart_TGF-b_C	-	no_errors	BMP5	HGNC	ENSG00000112175				99	0	0	124	21	14.4828
MYO6	0	genome.wustl.edu	37	6	76599858	76599858	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	6	76599858	76599858	A	-	DEL	MYO6	ENST00000369981	human	ensembl	74_37	+1	known	frame_shift_del	c.2743	p.K917fs	1.000	NULL	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom,prints_Myosin_head_motor_dom	-	no_errors	MYO6	HGNC	ENSG00000196586				126	0	0	125	25	16.6667
TTK	0	genome.wustl.edu	37	6	80751910	80751910	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	6	80751910	80751910	A	-	DEL	TTK	ENST00000369798	human	ensembl	74_37	+1	known	frame_shift_del	c.2565	p.K857fs	0.011	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	TTK	HGNC	ENSG00000112742				57	0	0	62	11	15.0685
IBTK	0	genome.wustl.edu	37	6	82891683	82891683	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	6	82891683	82891683	T	-	DEL	IBTK	ENST00000306270	human	ensembl	74_37	-1	known	frame_shift_del	c.3638	p.K1213fs	0.998	NULL	pfam_Reg_chr_condens,pfam_BTB_POZ,pfam_Ankyrin_rpt,superfamily_RCC1/BLIP-II,superfamily_BTB/POZ_fold,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_BTB/POZ-like,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_BTB/POZ-like,pfscan_Reg_chr_condens	-	no_errors	IBTK	HGNC	ENSG00000005700				66	0	0	76	14	15.5556
SNX14	0	genome.wustl.edu	37	6	86275079	86275080	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	6	86275079	86275080	-	A	INS	SNX14	ENST00000314673	human	ensembl	74_37	-1	known	frame_shift_ins	c.520_519	p.A173fs	1.000:1.000	pfam_Phox_assoc,smart_PX_assoc_Snx13,pfscan_Phox_assoc	pfam_Phox_assoc,pfam_Sorting_nexin_C,pfam_Phox,pfam_RGS_dom,superfamily_Phox,superfamily_Regulat_G_prot_signal_superfam,smart_PX_assoc_Snx13,smart_Regulat_G_prot_signal_superfam,smart_Phox,pfscan_Phox,pfscan_Phox_assoc,pfscan_Regulat_G_prot_signal_superfam	-	no_errors	SNX14	HGNC	ENSG00000135317				9	0	0	8	2	20
PNISR	0	genome.wustl.edu	37	6	99849343	99849343	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	6	99849343	99849343	T	-	DEL	PNISR	ENST00000369239	human	ensembl	74_37	-1	known	frame_shift_del	c.1491	p.E498fs	1.000	NULL	NULL	-	no_errors	PNISR	HGNC	ENSG00000132424				123	0	0	97	19	16.3793
SRRT	0	genome.wustl.edu	37	7	100479332	100479332	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	7	100479332	100479332	G	-	DEL	SRRT	ENST00000388793	human	ensembl	74_37	+1	known	frame_shift_del	c.304	p.G104fs	1.000	NULL	pfam_Arsenite-R_2,pfam_DUF3546	-	no_errors	SRRT	HGNC	ENSG00000087087				85	0	0	139	20	12.5786
AP1S1	0	genome.wustl.edu	37	7	100802405	100802405	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	7	100802405	100802405	G	-	DEL	AP1S1	ENST00000337619	human	ensembl	74_37	+1	known	frame_shift_del	c.357	p.D122fs	1.000	pfam_AP_mu_sigma_su,superfamily_Longin-like_dom,pirsf_AP_complex_ssu	pfam_AP_mu_sigma_su,superfamily_Longin-like_dom,pirsf_AP_complex_ssu	-	no_errors	AP1S1	HGNC	ENSG00000106367				42	0	0	79	9	10.2273
NAPEPLD	0	genome.wustl.edu	37	7	102769241	102769242	+	Splice_Site	INS	-	-	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	7	102769241	102769242	-	A	INS	NAPEPLD	ENST00000455523	human	ensembl	74_37	-1	known	splice_site_ins	c.204-3_204-2	e2-2	0.970:0.084	-	-	-	no_errors	NAPEPLD	HGNC	ENSG00000161048				105	0	0	146	13	8.1761
CFTR	0	genome.wustl.edu	37	7	117304765	117304766	+	Frame_Shift_Del	DEL	AC	AC	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	AC	AC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	7	117304765	117304766	AC	-	DEL	CFTR	ENST00000003084	human	ensembl	74_37	+1	known	frame_shift_del	c.3987_3988	p.Q1330fs	1.000:1.000	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like,tigrfam_cAMP_cl_channel	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_P-loop_NTPase,superfamily_ABC1_TM_dom,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom,prints_CysFib_conduc_TM,tigrfam_cAMP_cl_channel	-	no_errors	CFTR	HGNC	ENSG00000001626				166	0	0	234	36	13.3333
ZNF800	0	genome.wustl.edu	37	7	127013702	127013702	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	7	127013702	127013702	T	-	DEL	ZNF800	ENST00000265827	human	ensembl	74_37	-1	known	frame_shift_del	c.1688	p.K563fs	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF800	HGNC	ENSG00000048405				141	0	0	172	26	13.1313
SND1	0	genome.wustl.edu	37	7	127724851	127724851	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	7	127724851	127724851	C	-	DEL	SND1	ENST00000354725	human	ensembl	74_37	+1	known	frame_shift_del	c.2186	p.R731fs	0.661	pfam_Tudor,smart_Tudor,pirsf_Silence_cplx_Nase-comp_TudorSN,pfscan_Tudor	pfam_Staphylococal_nuclease_OB-fold,pfam_Tudor,superfamily_Staphylococal_nuclease_OB-fold,smart_Staphylococal_nuclease_OB-fold,smart_Tudor,pirsf_Silence_cplx_Nase-comp_TudorSN,pfscan_Tudor,pfscan_Staphylococal_nuclease_OB-fold	-	no_errors	SND1	HGNC	ENSG00000197157				62	0	0	84	19	18.4466
MKLN1	0	genome.wustl.edu	37	7	131148074	131148075	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	7	131148074	131148075	-	A	INS	MKLN1	ENST00000352689	human	ensembl	74_37	+1	known	frame_shift_ins	c.1624_1625	p.N543fs	1.000:1.000	NULL	pfam_Muskelin_N,pfam_Kelch_1,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,smart_LisH_dimerisation,pfscan_LisH_dimerisation,pfscan_CTLH_C	-	no_errors	MKLN1	HGNC	ENSG00000128585				165	0	0	228	26	10.2362
PODXL	0	genome.wustl.edu	37	7	131191478	131191478	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	7	131191478	131191478	C	-	DEL	PODXL	ENST00000541194	human	ensembl	74_37	-1	known	frame_shift_del	c.1115	p.G372fs	0.000	pfam_CD34/Podocalyxin,pirsf_Podocalyxin-like_p1	pfam_CD34/Podocalyxin,pirsf_Podocalyxin-like_p1	-	no_errors	PODXL	HGNC	ENSG00000128567				192	0	0	251	21	7.72059
OR9A1P	0	genome.wustl.edu	37	7	141587396	141587396	+	RNA	DEL	T	T	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	7	141587396	141587396	T	-	DEL	OR9A1P	ENST00000482201	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.121	-	-	-	no_errors	OR9A1P	HGNC	ENSG00000237621				28	0	0	52	7	11.8644
NOBOX	0	genome.wustl.edu	37	7	144098496	144098496	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	7	144098496	144098496	G	-	DEL	NOBOX	ENST00000467773	human	ensembl	74_37	-1	known	frame_shift_del	c.487	p.R163fs	0.001	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	-	no_errors	NOBOX	HGNC	ENSG00000106410				46	0	0	63	15	19.2308
CNTNAP2	0	genome.wustl.edu	37	7	146471423	146471423	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	7	146471423	146471423	C	-	DEL	CNTNAP2	ENST00000361727	human	ensembl	74_37	+1	known	frame_shift_del	c.158	p.I54fs	0.054	pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,smart_Coagulation_fac_5/8-C_type_dom,pfscan_Coagulation_fac_5/8-C_type_dom	pfam_Laminin_G,pfam_Coagulation_fac_5/8-C_type_dom,pfam_EG-like_dom,superfamily_Galactose-bd-like,superfamily_ConA-like_lec_gl_sf,superfamily_Fibrinogen_a/b/g_C_dom,smart_Coagulation_fac_5/8-C_type_dom,smart_Laminin_G,smart_EG-like_dom,smart_Neurexin-like,pfscan_EG-like_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_Laminin_G	-	no_errors	CNTNAP2	HGNC	ENSG00000174469				76	0	0	120	9	6.97674
ABCB8	0	genome.wustl.edu	37	7	150742383	150742384	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	7	150742383	150742384	-	C	INS	ABCB8	ENST00000297504	human	ensembl	74_37	+1	known	frame_shift_ins	c.2155_2156	p.P721fs	0.000:0.001	NULL	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_P-loop_NTPase,superfamily_ABC1_TM_dom,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom	-	no_errors	ABCB8	HGNC	ENSG00000197150				38	0	0	95	6	5.94059
RNF32	0	genome.wustl.edu	37	7	156436577	156436577	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	7	156436577	156436577	A	-	DEL	RNF32	ENST00000317955	human	ensembl	74_37	+1	known	frame_shift_del	c.6	p.N4fs	0.980	NULL	pfam_Znf_C3HC4_RING-type,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,smart_Znf_RING,pfscan_IQ_motif_EF-hand-BS,pfscan_Znf_RING	-	no_errors	RNF32	HGNC	ENSG00000105982				156	0	0	185	30	13.9535
SDK1	0	genome.wustl.edu	37	7	4285309	4285310	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	7	4285309	4285310	-	C	INS	SDK1	ENST00000404826	human	ensembl	74_37	+1	known	frame_shift_ins	c.6253_6254	p.P2087fs	1.000:1.000	NULL	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	SDK1	HGNC	ENSG00000146555				80	0	0	128	7	5.18519
C7orf57	0	genome.wustl.edu	37	7	48092305	48092305	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	7	48092305	48092305	A	-	DEL	C7orf57	ENST00000348904	human	ensembl	74_37	+1	known	frame_shift_del	c.614	p.N207fs	0.977	NULL	NULL	-	no_errors	C7orf57	HGNC	ENSG00000164746				103	0	0	185	18	8.867
COBL	0	genome.wustl.edu	37	7	51096436	51096437	+	Frame_Shift_Del	DEL	CT	CT	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	CT	CT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	7	51096436	51096437	CT	-	DEL	COBL	ENST00000395542	human	ensembl	74_37	-1	known	frame_shift_del	c.2603_2602	p.S868fs	0.000:0.000	NULL	pfam_Cordon-bleu_ubiquitin_domain,pfam_WH2_dom,smart_WH2_dom,pfscan_WH2_dom	-	no_errors	COBL	HGNC	ENSG00000106078				71	0	0	137	30	17.9641
EIF2AK1	0	genome.wustl.edu	37	7	6085740	6085740	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	7	6085740	6085740	T	-	DEL	EIF2AK1	ENST00000199389	human	ensembl	74_37	-1	known	frame_shift_del	c.592	p.I198fs	1.000	pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	EIF2AK1	HGNC	ENSG00000086232				22	0	0	53	5	8.62069
CACNA2D1	0	genome.wustl.edu	37	7	81667519	81667519	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	7	81667519	81667519	A	-	DEL	CACNA2D1	ENST00000356253	human	ensembl	74_37	-1	known	frame_shift_del	c.912	p.Q305fs	1.000	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_VDCC_a2/dsu,pfam_VWA_N,pfam_Cache_domain,pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	-	no_errors	CACNA2D1	HGNC	ENSG00000153956				175	0	0	219	13	5.60345
SEMA3D	0	genome.wustl.edu	37	7	84636220	84636220	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	7	84636220	84636220	A	-	DEL	SEMA3D	ENST00000284136	human	ensembl	74_37	-1	known	frame_shift_del	c.1806	p.F602fs	1.000	smart_Ig_sub	pfam_Semap_dom,pfam_Ig_V-set,superfamily_Semap_dom,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_Ig_sub,pfscan_Semap_dom,pfscan_Ig-like_dom	-	no_errors	SEMA3D	HGNC	ENSG00000153993				211	1	0.471698	247	38	13.3333
ABCB1	0	genome.wustl.edu	37	7	87178807	87178808	+	Frame_Shift_Del	DEL	CT	CT	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	CT	CT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	7	87178807	87178808	CT	-	DEL	ABCB1	ENST00000265724	human	ensembl	74_37	-1	known	frame_shift_del	c.1582_1581	p.A529fs	1.000:1.000	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,pfam_ABC_ATPase_put,superfamily_P-loop_NTPase,superfamily_ABC1_TM_dom,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom	-	no_errors	ABCB1	HGNC	ENSG00000085563				160	0	0	235	21	8.20312
AKAP9	0	genome.wustl.edu	37	7	91603085	91603085	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	7	91603085	91603085	A	-	DEL	AKAP9	ENST00000359028	human	ensembl	74_37	+1	known	frame_shift_del	c.145	p.K51fs	1.000	NULL	pfam_PACT_domain,superfamily_Prefoldin,superfamily_YbaB	-	no_errors	AKAP9	HGNC	ENSG00000127914				70	0	0	87	12	12.1212
LAMTOR4	0	genome.wustl.edu	37	7	99751181	99751181	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	7	99751181	99751181	G	-	DEL	LAMTOR4	ENST00000441173	human	ensembl	74_37	+1	putative	frame_shift_del	c.243	p.G83fs	0.000	NULL	NULL	-	no_errors	LAMTOR4	HGNC	ENSG00000188186				129	0	0	162	11	6.35838
STAG3L5P-PVRIG2P-PILRB	0	genome.wustl.edu	37	7	99943553	99943553	+	RNA	DEL	T	T	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	7	99943553	99943553	T	-	DEL	STAG3L5P-PVRIG2P-PILRB	ENST00000310771	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	STAG3L5P-PVRIG2P-PILRB	HGNC	ENSG00000272752				20	0	0	11	5	31.25
UBR5	0	genome.wustl.edu	37	8	103289349	103289349	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	8	103289349	103289349	T	-	DEL	UBR5	ENST00000520539	human	ensembl	74_37	-1	known	frame_shift_del	c.6360	p.E2121fs	0.987	NULL	pfam_HECT,pfam_E3_UbLigase_EDD_UBA,pfam_PABP_HYD,pfam_Znf_N-recognin,superfamily_HECT,superfamily_PABP_HYD,superfamily_RCC1/BLIP-II,smart_Znf_N-recognin_met,smart_PABP_HYD,smart_HECT,pfscan_HECT,pfscan_Znf_N-recognin	-	no_errors	UBR5	HGNC	ENSG00000104517				228	2	0.869565	251	76	23.2416
FZD6	0	genome.wustl.edu	37	8	104342161	104342161	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	8	104342161	104342161	C	-	DEL	FZD6	ENST00000358755	human	ensembl	74_37	+1	known	frame_shift_del	c.1820	p.R609fs	0.019	NULL	pfam_Frizzled,pfam_Frizzled_dom,superfamily_Frizzled_dom,smart_Frizzled_dom,pfscan_Frizzled_dom,pfscan_GPCR_2-like,prints_Frizzled	-	no_errors	FZD6	HGNC	ENSG00000164930				60	0	0	80	24	23.0769
SOX7	0	genome.wustl.edu	37	8	10583952	10583952	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	8	10583952	10583952	C	-	DEL	SOX7	ENST00000553390	human	ensembl	74_37	-1	known	frame_shift_del	c.619	p.A207fs	0.588	NULL	pfam_Sox_C_TAD,pfam_G_patch_dom,pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_G_patch_dom,pfscan_G_patch_dom,pfscan_HMG_box_dom	-	no_errors	SOX7	HGNC	ENSG00000171056				35	0	0	59	14	19.1781
MTBP	0	genome.wustl.edu	37	8	121514827	121514828	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	8	121514827	121514828	-	A	INS	MTBP	ENST00000305949	human	ensembl	74_37	+1	known	frame_shift_ins	c.1705_1706	p.T571fs	1.000:1.000	NULL	NULL	-	no_errors	MTBP	HGNC	ENSG00000172167				38	0	0	55	13	19.1176
SLC45A4	0	genome.wustl.edu	37	8	142222546	142222546	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	8	142222546	142222546	C	-	DEL	SLC45A4	ENST00000517878	human	ensembl	74_37	-1	known	frame_shift_del	c.2051	p.G684fs	0.080	superfamily_MFS_dom_general_subst_transpt	superfamily_MFS_dom_general_subst_transpt	-	no_errors	SLC45A4	HGNC	ENSG00000022567				132	0	0	194	35	15.2838
EPPK1	0	genome.wustl.edu	37	8	144941378	144941378	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	8	144941378	144941378	C	-	DEL	EPPK1	ENST00000525985	human	ensembl	74_37	-1	known	frame_shift_del	c.6044	p.G2015fs	0.996	pfam_Plectin_repeat,smart_Plectin_repeat	pfam_Plectin_repeat,smart_Plectin_repeat	-	no_errors	EPPK1	HGNC	ENSG00000227184				35	0	0	69	8	10.3896
RECQL4	0	genome.wustl.edu	37	8	145738055	145738055	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	8	145738055	145738055	C	-	DEL	RECQL4	ENST00000428558	human	ensembl	74_37	-1	known	frame_shift_del	c.2855	p.G952fs	1.000	NULL	pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_DNA_rep_checkpnt_protein,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,tigrfam_DNA_helicase_ATP-dep_RecQ	-	no_errors	RECQL4	HGNC	ENSG00000160957				90	0	0	108	20	15.625
LRRC14	0	genome.wustl.edu	37	8	145749468	145749469	+	RNA	DEL	AG	AG	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	8	145749468	145749469	AG	-	DEL	LRRC14	ENST00000528528	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.002:0.002	-	-	-	no_errors	LRRC14	HGNC	ENSG00000160959				337	1	0.295858	533	67	11.1667
TEX15	0	genome.wustl.edu	37	8	30703516	30703516	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	8	30703516	30703516	T	-	DEL	TEX15	ENST00000256246	human	ensembl	74_37	-1	known	frame_shift_del	c.3018	p.A1007fs	1.000	NULL	NULL	-	no_errors	TEX15	HGNC	ENSG00000133863				324	1	0.307692	436	78	15.1751
WHSC1L1	0	genome.wustl.edu	37	8	38146944	38146945	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	8	38146944	38146945	-	T	INS	WHSC1L1	ENST00000317025	human	ensembl	74_37	-1	known	frame_shift_ins	c.3198_3197	p.N1066fs	0.996:0.997	NULL	pfam_PWWP_dom,pfam_SET_dom,superfamily_Znf_FYVE_PHD,smart_PWWP_dom,smart_Znf_PHD,smart_AWS,smart_SET_dom,smart_Post-SET_dom,pfscan_AWS,pfscan_PWWP_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger	-	no_errors	WHSC1L1	HGNC	ENSG00000147548				323	0	0	497	63	11.25
ST18	0	genome.wustl.edu	37	8	53071553	53071553	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	8	53071553	53071553	G	-	DEL	ST18	ENST00000276480	human	ensembl	74_37	-1	known	frame_shift_del	c.1711	p.H571fs	1.000	pfam_Myelin_TF	pfam_Myelin_TF,pfam_Znf_C2HC	-	no_errors	ST18	HGNC	ENSG00000147488				202	0	0	302	31	9.30931
RP1	0	genome.wustl.edu	37	8	55540279	55540279	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	8	55540279	55540279	T	-	DEL	RP1	ENST00000220676	human	ensembl	74_37	+1	known	frame_shift_del	c.3837	p.P1282fs	0.000	NULL	pfam_Doublecortin_dom,smart_Doublecortin_dom,pfscan_Doublecortin_dom	-	no_errors	RP1	HGNC	ENSG00000104237				368	0	0	484	76	13.5714
ERICH1	0	genome.wustl.edu	37	8	623865	623865	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	8	623865	623865	T	-	DEL	ERICH1	ENST00000262109	human	ensembl	74_37	-1	known	frame_shift_del	c.487	p.R163fs	0.988	NULL	NULL	-	no_errors	ERICH1	HGNC	ENSG00000104714				179	0	0	290	49	14.4543
MYBL1	0	genome.wustl.edu	37	8	67488453	67488453	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	8	67488453	67488453	T	-	DEL	MYBL1	ENST00000522677	human	ensembl	74_37	-1	known	frame_shift_del	c.1259	p.N420fs	0.992	NULL	pfam_C-myb_C,pfam_SANT/Myb,pfam_Tscrpt_reg_Wos2-domain,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	MYBL1	HGNC	ENSG00000185697				279	0	0	377	66	14.8984
SULF1	0	genome.wustl.edu	37	8	70488249	70488249	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	8	70488249	70488249	G	-	DEL	SULF1	ENST00000260128	human	ensembl	74_37	+1	known	frame_shift_del	c.217	p.A75fs	0.999	pfam_Sulfatase,superfamily_Alkaline_phosphatase_core,pirsf_Extracellular_sulfatase	pfam_Sulfatase,pfam_Extracellular_sulfatase_C,pfam_Phosphodiest/P_Trfase,superfamily_Alkaline_phosphatase_core,pirsf_Extracellular_sulfatase	-	no_errors	SULF1	HGNC	ENSG00000137573				57	0	0	96	14	12.7273
ZFHX4	0	genome.wustl.edu	37	8	77763477	77763477	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	8	77763477	77763477	A	-	DEL	ZFHX4	ENST00000521891	human	ensembl	74_37	+1	known	frame_shift_del	c.4320	p.K1442fs	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Homeobox_dom,superfamily_Homeodomain-like,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Znf_C2H2-like,smart_Znf_U1,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	ZFHX4	HGNC	ENSG00000091656				28	0	0	64	8	11.1111
TMEM67	0	genome.wustl.edu	37	8	94828723	94828723	+	RNA	DEL	A	A	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	8	94828723	94828723	A	-	DEL	TMEM67	ENST00000463467	human	ensembl	74_37	+1	putative	rna	NULL	NULL	0.614	-	-	-	no_errors	TMEM67	HGNC	ENSG00000164953				23	0	0	38	8	17.3913
INTS8	0	genome.wustl.edu	37	8	95848830	95848830	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	8	95848830	95848830	T	-	DEL	INTS8	ENST00000523731	human	ensembl	74_37	+1	known	frame_shift_del	c.832	p.F279fs	1.000	NULL	NULL	-	no_errors	INTS8	HGNC	ENSG00000164941				112	0	0	192	27	12.3288
TSPYL5	0	genome.wustl.edu	37	8	98289663	98289664	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	8	98289663	98289664	-	G	INS	TSPYL5	ENST00000322128	human	ensembl	74_37	-1	known	frame_shift_ins	c.410_409	p.R137fs	0.730:0.768	NULL	pfam_NAP_family	-	no_errors	TSPYL5	HGNC	ENSG00000180543				93	0	0	174	18	9.375
POP1	0	genome.wustl.edu	37	8	99148887	99148887	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	8	99148887	99148887	A	-	DEL	POP1	ENST00000349693	human	ensembl	74_37	+1	known	frame_shift_del	c.1189	p.I399fs	0.996	NULL	pfam_RNase_P/MRP_POP1,pfam_POPLD	-	no_errors	POP1	HGNC	ENSG00000104356				82	0	0	137	14	9.27152
XPA	0	genome.wustl.edu	37	9	100437634	100437634	+	RNA	DEL	T	T	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	9	100437634	100437634	T	-	DEL	XPA	ENST00000485042	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.004	-	-	-	no_errors	XPA	HGNC	ENSG00000136936				12	0	0	11	9	45
FKTN	0	genome.wustl.edu	37	9	108382331	108382331	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	9	108382331	108382331	A	-	DEL	FKTN	ENST00000223528	human	ensembl	74_37	+1	known	frame_shift_del	c.1161	p.K389fs	1.000	pfam_LicD	pfam_LicD,superfamily_Hedgehog_sig/DD-Pept_Zn-bd_dom	-	no_errors	FKTN	HGNC	ENSG00000106692				54	0	0	60	8	11.7647
PTPN3	0	genome.wustl.edu	37	9	112145799	112145799	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	9	112145799	112145799	G	-	DEL	PTPN3	ENST00000374541	human	ensembl	74_37	-1	known	frame_shift_del	c.2286	p.D763fs	0.022	pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,pirsf_Tyr_Pase_non-rcpt_typ-3/4,pfscan_Tyr_Pase_rcpt/non-rcpt	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_FERM_N,pfam_FERM_PH-like_C,pfam_FERM_central,pfam_PDZ,pfam_Dual-sp_phosphatase_cat-dom,superfamily_FERM_central,superfamily_PDZ,smart_Band_41_domain,smart_PDZ,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pirsf_Tyr_Pase_non-rcpt_typ-3/4,prints_Tyr_Pase_rcpt/non-rcpt,prints_Band_41_fam,prints_Ez/rad/moesin_like,pfscan_FERM_domain,pfscan_PDZ,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPN3	HGNC	ENSG00000070159				160	0	0	179	11	5.78947
MIR4668	0	genome.wustl.edu	37	9	114694384	114694385	+	RNA	DEL	AA	AA	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	9	114694384	114694385	AA	-	DEL	MIR4668	ENST00000582284	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	MIR4668	HGNC	ENSG00000266315				60	0	0	71	17	19.3182
SUSD1	0	genome.wustl.edu	37	9	114825285	114825285	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	9	114825285	114825285	A	-	DEL	SUSD1	ENST00000374264	human	ensembl	74_37	-1	known	frame_shift_del	c.1782	p.F594fs	0.179	NULL	pfam_EGF-like_Ca-bd_dom,pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,superfamily_Fibronectin_type3,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Sushi_SCR_CCP,pfscan_EG-like_dom,pfscan_Sushi_SCR_CCP	-	no_errors	SUSD1	HGNC	ENSG00000106868				186	1	0.534759	216	40	15.625
CDK5RAP2	0	genome.wustl.edu	37	9	123290085	123290085	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	9	123290085	123290085	T	-	DEL	CDK5RAP2	ENST00000349780	human	ensembl	74_37	-1	known	frame_shift_del	c.998	p.K333fs	1.000	NULL	pfam_Spindle_assoc	-	no_errors	CDK5RAP2	HGNC	ENSG00000136861				121	0	0	110	24	17.9104
OR1L3	0	genome.wustl.edu	37	9	125437936	125437936	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	9	125437936	125437936	T	-	DEL	OR1L3	ENST00000304820	human	ensembl	74_37	+1	known	frame_shift_del	c.528	p.C179fs	0.947	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR1L3	HGNC	ENSG00000171481				416	2	0.478469	412	72	14.876
RABGAP1	0	genome.wustl.edu	37	9	125827753	125827754	+	Frame_Shift_Del	DEL	AA	AA	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	9	125827753	125827754	AA	-	DEL	RABGAP1	ENST00000456584	human	ensembl	74_37	+1	known	frame_shift_del	c.1717_1718	p.K576fs	0.000:0.000	pfscan_Rab-GTPase-TBC_dom	pfam_Kinesin-like,pfam_Rab-GTPase-TBC_dom,pfam_PTB/PI_dom,superfamily_Rab-GTPase-TBC_dom,smart_PTB/PI_dom,pfscan_PTB/PI_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	RABGAP1	HGNC	ENSG00000011454				55	0	0	83	20	19.4175
ENSG00000234921	0	genome.wustl.edu	37	9	126794643	126794643	+	RNA	DEL	G	G	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	9	126794643	126794643	G	-	DEL	ENSG00000234921	ENST00000429482	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RP11-85O21.5	Clone_based_vega_gene	ENSG00000234921				72	0	0	96	10	9.43396
GTF3C4	0	genome.wustl.edu	37	9	135554691	135554691	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	9	135554691	135554691	A	-	DEL	GTF3C4	ENST00000372146	human	ensembl	74_37	+1	known	frame_shift_del	c.1685	p.K564fs	1.000	NULL	superfamily_WD40_repeat_dom	-	no_errors	GTF3C4	HGNC	ENSG00000125484				235	0	0	259	40	13.3779
LINC00094	0	genome.wustl.edu	37	9	136899776	136899776	+	RNA	DEL	C	C	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	9	136899776	136899776	C	-	DEL	LINC00094	ENST00000605164	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	LINC00094	HGNC	ENSG00000235106				71	0	0	75	17	18.4783
RXRA	0	genome.wustl.edu	37	9	137300039	137300040	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	9	137300039	137300040	-	C	INS	RXRA	ENST00000481739	human	ensembl	74_37	+1	known	frame_shift_ins	c.324_325	p.L110fs	1.000:1.000	pfam_Nuc_recep-AF1	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Nuc_recep-AF1,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Retinoid-X_rcpt/HNF4,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,prints_COUP_TF,prints_Retinoic_acid_rcpt	-	no_errors	RXRA	HGNC	ENSG00000186350				66	0	0	74	9	10.8434
COL5A1	0	genome.wustl.edu	37	9	137630637	137630637	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	9	137630637	137630637	G	-	DEL	COL5A1	ENST00000371817	human	ensembl	74_37	+1	known	frame_shift_del	c.1477	p.D494fs	1.000	pfam_Collagen	pfam_Collagen,pfam_Fib_collagen_C,pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,superfamily_Fibrinogen_a/b/g_C_dom,smart_Laminin_G,smart_Fib_collagen_C	-	no_errors	COL5A1	HGNC	ENSG00000130635				190	0	0	194	16	7.61905
PSIP1	0	genome.wustl.edu	37	9	15472612	15472613	+	RNA	DEL	AA	AA	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	9	15472612	15472613	AA	-	DEL	PSIP1	ENST00000495873	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001:0.000	-	-	-	no_errors	PSIP1	HGNC	ENSG00000164985				112	0	0	107	21	16.4062
PLIN2	0	genome.wustl.edu	37	9	19119813	19119813	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	9	19119813	19119813	T	-	DEL	PLIN2	ENST00000276914	human	ensembl	74_37	-1	known	frame_shift_del	c.612	p.V205fs	0.130	pfam_Perilipin,pirsf_Perilipin	pfam_Perilipin,pirsf_Perilipin	-	no_errors	PLIN2	HGNC	ENSG00000147872				227	0	0	264	32	10.8108
IFNA16	0	genome.wustl.edu	37	9	21216773	21216773	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	9	21216773	21216773	A	-	DEL	IFNA16	ENST00000380216	human	ensembl	74_37	-1	known	frame_shift_del	c.532	p.S178fs	0.001	pfam_Interferon_alpha/beta/delta,superfamily_4_helix_cytokine-like_core	pfam_Interferon_alpha/beta/delta,superfamily_4_helix_cytokine-like_core,smart_Interferon_alpha/beta/delta,prints_Interferon_alpha/beta/delta	-	no_errors	IFNA16	HGNC	ENSG00000147885				473	1	0.21097	488	106	17.8451
RFX3	0	genome.wustl.edu	37	9	3248099	3248100	+	Frame_Shift_Del	DEL	AT	AT	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	AT	AT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	9	3248099	3248100	AT	-	DEL	RFX3	ENST00000382004	human	ensembl	74_37	-1	known	frame_shift_del	c.1901_1900	p.M634fs	1.000:1.000	NULL	pfam_RFX1_trans_act,pfam_DNA-bd_RFX	-	no_errors	RFX3	HGNC	ENSG00000080298				119	0	0	134	23	14.6497
VPS13A	0	genome.wustl.edu	37	9	79897181	79897181	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	9	79897181	79897181	A	-	DEL	VPS13A	ENST00000360280	human	ensembl	74_37	+1	known	frame_shift_del	c.3109	p.K1038fs	0.998	NULL	pfam_VPSAP_dom,pfam_Autophagy-rel_C	-	no_errors	VPS13A	HGNC	ENSG00000197969				56	0	0	61	9	12.8571
VPS13A	0	genome.wustl.edu	37	9	79999547	79999548	+	In_Frame_Ins	INS	-	-	TGA			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	9	79999547	79999548	-	TGA	INS	VPS13A	ENST00000357409	human	ensembl	74_37	+1	known	in_frame_ins	c.9236_9237	p.3083in_frame_insD	1.000:0.999	NULL	pfam_VPSAP_dom,pfam_Autophagy-rel_C	-	no_errors	VPS13A	HGNC	ENSG00000197969				81	0	0	87	19	17.9245
PHF2	0	genome.wustl.edu	37	9	96422612	96422612	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	9	96422612	96422612	A	-	DEL	PHF2	ENST00000359246	human	ensembl	74_37	+1	known	frame_shift_del	c.1468	p.K492fs	1.000	NULL	pfam_JmjC_dom,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_JmjC_dom,pfscan_JmjC_dom,pfscan_Znf_PHD-finger	-	no_errors	PHF2	HGNC	ENSG00000197724				15	0	0	24	3	11.1111
NXF4	0	genome.wustl.edu	37	X	101818283	101818284	+	RNA	INS	-	-	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	X	101818283	101818284	-	T	INS	NXF4	ENST00000360035	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001:0.000	-	-	-	no_errors	NXF4	HGNC	ENSG00000196970				104	0	0	142	13	8.3871
RAB40AL	0	genome.wustl.edu	37	X	102192592	102192593	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	X	102192592	102192593	-	C	INS	RAB40AL	ENST00000218249	human	ensembl	74_37	+1	known	frame_shift_ins	c.346_347	p.G118fs	1.000:1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_SOCS_C,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,smart_SOCS_C,pfscan_SOCS_C,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB40AL	HGNC	ENSG00000102128				255	0	0	354	23	6.1008
RNF128	0	genome.wustl.edu	37	X	105937256	105937256	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	X	105937256	105937256	T	-	DEL	RNF128	ENST00000324342	human	ensembl	74_37	+1	known	frame_shift_del	c.24	p.W11fs	0.000	NULL	pfam_Protease-assoc_domain,pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF128	HGNC	ENSG00000133135				89	0	0	79	18	18.5567
SLC6A14	0	genome.wustl.edu	37	X	115569030	115569030	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	X	115569030	115569030	A	-	DEL	SLC6A14	ENST00000371900	human	ensembl	74_37	+1	known	frame_shift_del	c.121	p.K42fs	1.000	pfam_Na/ntran_symport,pfscan_Na/ntran_symport	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport	-	no_errors	SLC6A14	HGNC	ENSG00000087916				260	1	0.383142	300	53	15.0142
STAG2	0	genome.wustl.edu	37	X	123164817	123164817	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	X	123164817	123164817	A	-	DEL	STAG2	ENST00000218089	human	ensembl	74_37	+1	known	frame_shift_del	c.130	p.G46fs	1.000	NULL	pfam_STAG,superfamily_ARM-type_fold	-	no_errors	STAG2	HGNC	ENSG00000101972				99	0	0	120	23	16.0839
ARHGAP36	0	genome.wustl.edu	37	X	130215725	130215725	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	X	130215725	130215725	T	-	DEL	ARHGAP36	ENST00000276211	human	ensembl	74_37	+1	known	frame_shift_del	c.86	p.L31fs	0.957	NULL	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP36	HGNC	ENSG00000147256				390	0	0	437	84	16.1228
USP26	0	genome.wustl.edu	37	X	132160413	132160413	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	X	132160413	132160413	T	-	DEL	USP26	ENST00000370832	human	ensembl	74_37	-1	known	frame_shift_del	c.1836	p.G613fs	0.000	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	-	no_errors	USP26	HGNC	ENSG00000134588				120	0	0	159	29	15.4255
DDX26B	0	genome.wustl.edu	37	X	134681154	134681155	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	X	134681154	134681155	-	A	INS	DDX26B	ENST00000370752	human	ensembl	74_37	+1	known	frame_shift_ins	c.706_707	p.T238fs	1.000:1.000	NULL	pfscan_VWF_A	-	no_errors	DDX26B	HGNC	ENSG00000165359				340	0	0	375	63	14.3836
RNA5SP498	0	genome.wustl.edu	37	X	1419259	1419259	+	RNA	DEL	A	A	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	X	1419259	1419259	A	-	DEL	RNA5SP498	ENST00000411342	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.229	-	-	-	no_errors	RNA5SP498	HGNC	ENSG00000223274				24	0	0	32	7	17.9487
GABRE	0	genome.wustl.edu	37	X	151130987	151130987	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	X	151130987	151130987	A	-	DEL	GABRE	ENST00000370328	human	ensembl	74_37	-1	known	frame_shift_del	c.471	p.F157fs	0.989	pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,prints_Neur_channel,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABAA_rcpt,prints_GABAAe_rcpt,prints_GABAAa_rcpt,prints_Neur_channel,prints_GABBAg_rcpt,tigrfam_Neur_channel	-	no_errors	GABRE	HGNC	ENSG00000102287				130	0	0	144	34	19.1011
L1CAM	0	genome.wustl.edu	37	X	153132296	153132296	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	X	153132296	153132296	G	-	DEL	L1CAM	ENST00000543994	human	ensembl	74_37	-1	known	frame_shift_del	c.2245	p.Q749fs	0.247	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	L1CAM	HGNC	ENSG00000198910				77	0	0	108	24	18.1818
FLNA	0	genome.wustl.edu	37	X	153590824	153590824	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	X	153590824	153590824	C	-	DEL	FLNA	ENST00000369850	human	ensembl	74_37	-1	known	frame_shift_del	c.2527	p.A843fs	1.000	pfam_Filamin/ABP280_repeat-like,superfamily_Ig_E-set,smart_Filamin,pfscan_Filamin/ABP280_repeat-like	pfam_Filamin/ABP280_repeat-like,pfam_CH-domain,superfamily_CH-domain,superfamily_Ig_E-set,smart_CH-domain,smart_Filamin,pfscan_CH-domain,pfscan_Filamin/ABP280_repeat-like	-	no_errors	FLNA	HGNC	ENSG00000196924				178	0	0	236	52	18.0556
DKC1	0	genome.wustl.edu	37	X	153994770	153994771	+	RNA	INS	-	-	A			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	X	153994770	153994771	-	A	INS	DKC1	ENST00000473552	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	DKC1	HGNC	ENSG00000130826				15	0	0	8	2	20
MXRA5	0	genome.wustl.edu	37	X	3235581	3235581	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	X	3235581	3235581	G	-	DEL	MXRA5	ENST00000217939	human	ensembl	74_37	-1	known	frame_shift_del	c.6141	p.V2048fs	0.381	pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	MXRA5	HGNC	ENSG00000101825				31	0	0	42	8	16
USP9X	0	genome.wustl.edu	37	X	41055854	41055855	+	Frame_Shift_Del	DEL	AG	AG	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	X	41055854	41055855	AG	-	DEL	USP9X	ENST00000324545	human	ensembl	74_37	+1	known	frame_shift_del	c.4096_4097	p.R1368fs	0.999:1.000	NULL	pfam_Peptidase_C19/C67,superfamily_ARM-type_fold,pfscan_Peptidase_C19/C67	-	no_errors	USP9X	HGNC	ENSG00000124486				130	0	0	163	19	10.4396
RBM10	0	genome.wustl.edu	37	X	47045497	47045501	+	Frame_Shift_Del	DEL	AGAGA	AGAGA	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	AGAGA	AGAGA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	X	47045497	47045501	AGAGA	-	DEL	RBM10	ENST00000377604	human	ensembl	74_37	+1	known	frame_shift_del	c.2464_2468	p.R822fs	1.000:1.000:0.992:1.000:1.000	NULL	pfam_G_patch_dom,pfam_RRM_dom,pfam_Znf_RanBP2,smart_RRM_dom,smart_Znf_RanBP2,smart_G_patch_dom,pfscan_Znf_RanBP2,pfscan_Znf_C2H2,pfscan_G_patch_dom,pfscan_RRM_dom	-	no_errors	RBM10	HGNC	ENSG00000182872				97	0	0	109	13	10.6557
ELK1	0	genome.wustl.edu	37	X	47498644	47498644	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	X	47498644	47498644	G	-	DEL	ELK1	ENST00000247161	human	ensembl	74_37	-1	known	frame_shift_del	c.304	p.Q102fs	0.021	NULL	pfam_Ets_dom,smart_Ets_dom,pfscan_Ets_dom,prints_Ets_dom	-	no_errors	ELK1	HGNC	ENSG00000126767				28	0	0	47	6	11.3208
WDR13	0	genome.wustl.edu	37	X	48457035	48457036	+	RNA	DEL	CC	CC	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	CC	CC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	X	48457035	48457036	CC	-	DEL	WDR13	ENST00000479279	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	WDR13	HGNC	ENSG00000101940				17	0	0	21	5	19.2308
DGKK	0	genome.wustl.edu	37	X	50111890	50111890	+	RNA	DEL	T	T	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	X	50111890	50111890	T	-	DEL	DGKK	ENST00000376025	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.486	-	-	-	no_errors	DGKK	HGNC	ENSG00000204466				25	0	0	38	8	17.3913
HEPH	0	genome.wustl.edu	37	X	65483525	65483525	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	X	65483525	65483525	A	-	DEL	HEPH	ENST00000519389	human	ensembl	74_37	+1	known	frame_shift_del	c.3401	p.A1136fs	0.526	NULL	pfam_Cu-oxidase_3,pfam_Cu-oxidase_2,superfamily_Cupredoxin	-	no_errors	HEPH	HGNC	ENSG00000089472				190	0	0	185	23	11.0577
PJA1	0	genome.wustl.edu	37	X	68382265	68382265	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	X	68382265	68382265	T	-	DEL	PJA1	ENST00000361478	human	ensembl	74_37	-1	known	frame_shift_del	c.817	p.I273fs	0.069	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	PJA1	HGNC	ENSG00000181191				161	0	0	210	37	14.9798
RGAG4	0	genome.wustl.edu	37	X	71349939	71349939	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	X	71349939	71349939	G	-	DEL	RGAG4	ENST00000479991	human	ensembl	74_37	-1	known	frame_shift_del	c.1452	p.T485fs	0.001	NULL	pfam_Retrotrans_gag_dom	-	no_errors	RGAG4	HGNC	ENSG00000242732				103	0	0	148	29	16.3842
ZNF711	0	genome.wustl.edu	37	X	84526788	84526788	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	X	84526788	84526788	A	-	DEL	ZNF711	ENST00000395402	human	ensembl	74_37	+1	known	frame_shift_del	c.2264	p.N757fs	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Transcrp_activ_Zfx/Zfy-dom,pfam_Znf_C2H2,pfam_Znf_C2H2_jaz,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF711	HGNC	ENSG00000147180				129	0	0	141	18	11.3208
FAM9A	0	genome.wustl.edu	37	X	8764319	8764320	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	X	8764319	8764320	-	T	INS	FAM9A	ENST00000381003	human	ensembl	74_37	-1	known	frame_shift_ins	c.478_477	p.Q159fs	0.007:0.007	NULL	NULL	-	no_errors	FAM9A	HGNC	ENSG00000183304				29	0	0	39	8	17.0213
FAM9A	0	genome.wustl.edu	37	X	8764320	8764320	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-4370-01A-01D-1158-08	TCGA-BR-4370-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ff3bb252-cc2a-4053-b9c6-6e6fd8de6d8e	18ac71f7-5e0b-4232-b724-197e4e4c1ea8	X	8764320	8764320	T	-	DEL	FAM9A	ENST00000381003	human	ensembl	74_37	-1	known	frame_shift_del	c.477	p.K159fs	0.007	NULL	NULL	-	no_errors	FAM9A	HGNC	ENSG00000183304				29	0	0	40	7	14.8936
