Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
UBE4B	0	genome.wustl.edu	37	1	10179613	10179613	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4371-01A-01D-1158-08	TCGA-BR-4371-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	959629fa-0d96-4774-a99c-c5103a42d8d8	158777de-8f13-42b8-847c-a5951a7246a2	1	10179613	10179613	C	T	SNP	UBE4B	ENST00000343090	human	ensembl	74_37	+1	known	missense	c.1381	p.R461C	1.000	NULL	pfam_Ub_conjug_fac_E4_core,pfam_Ubox_domain,smart_Ubox_domain	-	no_errors	UBE4B	HGNC	ENSG00000130939				73	0	0	81	21	20.5882
SLC16A4	0	genome.wustl.edu	37	1	110925531	110925531	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-4371-01A-01D-1158-08	TCGA-BR-4371-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	959629fa-0d96-4774-a99c-c5103a42d8d8	158777de-8f13-42b8-847c-a5951a7246a2	1	110925531	110925531	G	A	SNP	SLC16A4	ENST00000369779	human	ensembl	74_37	-1	known	nonsense	c.145	p.Q49*	1.000	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC16A4	HGNC	ENSG00000168679				129	0	0	158	34	17.7083
ATP1A4	0	genome.wustl.edu	37	1	160143992	160143992	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4371-01A-01D-1158-08	TCGA-BR-4371-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	959629fa-0d96-4774-a99c-c5103a42d8d8	158777de-8f13-42b8-847c-a5951a7246a2	1	160143992	160143992	G	A	SNP	ATP1A4	ENST00000368081	human	ensembl	74_37	+1	known	missense	c.2083	p.V695M	1.000	pfam_HAD-like_dom,superfamily_HAD-like_dom,tigrfam_ATPase_P-typ_Na/K_IIC,tigrfam_Cation_transp_P_typ_ATPase	pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_cation-transptr_C,pfam_HAD-like_dom,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_P-typ_cyto_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Na/K_IIC,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP1A4	HGNC	ENSG00000132681				77	0	0	113	19	14.3939
TNN	0	genome.wustl.edu	37	1	175046955	175046955	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4371-01A-01D-1158-08	TCGA-BR-4371-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	959629fa-0d96-4774-a99c-c5103a42d8d8	158777de-8f13-42b8-847c-a5951a7246a2	1	175046955	175046955	G	A	SNP	TNN	ENST00000239462	human	ensembl	74_37	+1	known	missense	c.401	p.G134E	1.000	NULL	pfam_Fibronectin_type3,pfam_Fibrinogen_a/b/g_C_dom,pfam_EGF_extracell,superfamily_Fibrinogen_a/b/g_C_dom,superfamily_Fibronectin_type3,smart_EG-like_dom,smart_Fibronectin_type3,smart_Fibrinogen_a/b/g_C_dom,pfscan_Fibronectin_type3	-	no_errors	TNN	HGNC	ENSG00000120332				36	0	0	44	14	24.1379
LHX9	0	genome.wustl.edu	37	1	197890498	197890498	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4371-01A-01D-1158-08	TCGA-BR-4371-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	959629fa-0d96-4774-a99c-c5103a42d8d8	158777de-8f13-42b8-847c-a5951a7246a2	1	197890498	197890498	C	T	SNP	LHX9	ENST00000367387	human	ensembl	74_37	+1	known	missense	c.442	p.R148C	1.000	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	pfam_Znf_LIM,pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Znf_LIM,smart_Homeobox_dom,pfscan_Znf_LIM,pfscan_Homeobox_dom	-	no_errors	LHX9	HGNC	ENSG00000143355				70	0	0	106	22	17.1875
HHAT	0	genome.wustl.edu	37	1	210761322	210761322	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4371-01A-01D-1158-08	TCGA-BR-4371-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	959629fa-0d96-4774-a99c-c5103a42d8d8	158777de-8f13-42b8-847c-a5951a7246a2	1	210761322	210761322	T	C	SNP	HHAT	ENST00000391905	human	ensembl	74_37	+1	known	missense	c.1124	p.V375A	1.000	pfam_MBOAT_fam	pfam_MBOAT_fam	-	no_errors	HHAT	HGNC	ENSG00000054392				83	0	0	110	15	12
TGFB2	0	genome.wustl.edu	37	1	218614600	218614600	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4371-01A-01D-1158-08	TCGA-BR-4371-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	959629fa-0d96-4774-a99c-c5103a42d8d8	158777de-8f13-42b8-847c-a5951a7246a2	1	218614600	218614600	G	A	SNP	TGFB2	ENST00000366929	human	ensembl	74_37	+1	known	missense	c.1225	p.V409M	1.000	pirsf_TGF-beta,pfam_TGF-b_C,smart_TGF-b_C	pirsf_TGF-beta,pfam_TGF-b_N,pfam_TGF-b_C,smart_TGF-b_C,prints_TGFb2,prints_TGF-beta	-	no_errors	TGFB2	HGNC	ENSG00000092969				133	0	0	186	62	25
RPS6KA1	0	genome.wustl.edu	37	1	26888152	26888152	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-4371-01A-01D-1158-08	TCGA-BR-4371-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	959629fa-0d96-4774-a99c-c5103a42d8d8	158777de-8f13-42b8-847c-a5951a7246a2	1	26888152	26888152	G	C	SNP	RPS6KA1	ENST00000531382	human	ensembl	74_37	+1	known	missense	c.1615	p.G539R	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Ribosomal_S6_kinase_II,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,pfam_Pkinase_C,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Ribosomal_S6_kinase_II,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	RPS6KA1	HGNC	ENSG00000117676				115	0	0	91	22	19.469
ERMAP	0	genome.wustl.edu	37	1	43296183	43296183	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4371-01A-01D-1158-08	TCGA-BR-4371-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	959629fa-0d96-4774-a99c-c5103a42d8d8	158777de-8f13-42b8-847c-a5951a7246a2	1	43296183	43296183	C	T	SNP	ERMAP	ENST00000372514	human	ensembl	74_37	+1	known	missense	c.64	p.R22W	0.888	pfscan_Ig-like_dom	pfam_SPRY_rcpt,pfam_Ig_V-set,superfamily_ConA-like_lec_gl_sf,smart_Ig_sub,smart_Ig_V-set_subgr,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Ig-like_dom,prints_Butyrophylin	-	no_errors	ERMAP	HGNC	ENSG00000164010				121	0	0	80	51	38.9313
ZNF691	0	genome.wustl.edu	37	1	43317331	43317331	+	Silent	SNP	C	C	T			TCGA-BR-4371-01A-01D-1158-08	TCGA-BR-4371-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	959629fa-0d96-4774-a99c-c5103a42d8d8	158777de-8f13-42b8-847c-a5951a7246a2	1	43317331	43317331	C	T	SNP	ZNF691	ENST00000397044	human	ensembl	74_37	+1	known	silent	c.795	p.S265	0.741	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF691	HGNC	ENSG00000164011				103	0	0	88	27	23.4783
TIE1	0	genome.wustl.edu	37	1	43778103	43778103	+	Silent	SNP	C	C	T			TCGA-BR-4371-01A-01D-1158-08	TCGA-BR-4371-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	959629fa-0d96-4774-a99c-c5103a42d8d8	158777de-8f13-42b8-847c-a5951a7246a2	1	43778103	43778103	C	T	SNP	TIE1	ENST00000372476	human	ensembl	74_37	+1	known	silent	c.1758	p.D586	0.031	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,smart_Ig_sub,smart_EG-like_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_EG-like_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	TIE1	HGNC	ENSG00000066056				66	0	0	67	38	36.1905
SPATA6	0	genome.wustl.edu	37	1	48865100	48865100	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4371-01A-01D-1158-08	TCGA-BR-4371-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	959629fa-0d96-4774-a99c-c5103a42d8d8	158777de-8f13-42b8-847c-a5951a7246a2	1	48865100	48865100	G	A	SNP	SPATA6	ENST00000371847	human	ensembl	74_37	-1	known	missense	c.703	p.R235W	1.000	NULL	NULL	-	no_errors	SPATA6	HGNC	ENSG00000132122				241	0	0	198	69	25.8427
C1orf141	0	genome.wustl.edu	37	1	67558906	67558906	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4371-01A-01D-1158-08	TCGA-BR-4371-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	959629fa-0d96-4774-a99c-c5103a42d8d8	158777de-8f13-42b8-847c-a5951a7246a2	1	67558906	67558906	C	A	SNP	C1orf141	ENST00000371006	human	ensembl	74_37	-1	known	missense	c.985	p.V329L	0.000	NULL	NULL	-	no_errors	C1orf141	HGNC	ENSG00000203963				153	1	0.649351	109	57	34.3373
LPPR5	0	genome.wustl.edu	37	1	99470147	99470147	+	Silent	SNP	C	C	T			TCGA-BR-4371-01A-01D-1158-08	TCGA-BR-4371-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	959629fa-0d96-4774-a99c-c5103a42d8d8	158777de-8f13-42b8-847c-a5951a7246a2	1	99470147	99470147	C	T	SNP	LPPR5	ENST00000263177	human	ensembl	74_37	-1	known	silent	c.81	p.A27	0.976	NULL	pfam_P_Acid_Pase_2/haloperoxidase,superfamily_P_Acid_Pase_2/haloperoxidase,smart_P_Acid_Pase_2/haloperoxidase	-	no_errors	LPPR5	Uniprot_gn	ENSG00000117598				59	0	0	48	49	50.5155
ENTPD7	0	genome.wustl.edu	37	10	101464232	101464232	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4371-01A-01D-1158-08	TCGA-BR-4371-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	959629fa-0d96-4774-a99c-c5103a42d8d8	158777de-8f13-42b8-847c-a5951a7246a2	10	101464232	101464232	G	A	SNP	ENTPD7	ENST00000370489	human	ensembl	74_37	+1	known	missense	c.1607	p.R536Q	1.000	NULL	pfam_GDA1_CD39_NTPase	-	no_errors	ENTPD7	HGNC	ENSG00000198018				119	0	0	137	21	13.2911
TECTB	0	genome.wustl.edu	37	10	114059304	114059304	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4371-01A-01D-1158-08	TCGA-BR-4371-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	959629fa-0d96-4774-a99c-c5103a42d8d8	158777de-8f13-42b8-847c-a5951a7246a2	10	114059304	114059304	G	A	SNP	TECTB	ENST00000369422	human	ensembl	74_37	+1	known	missense	c.889	p.V297M	0.982	NULL	pfam_ZP_dom,smart_ZP_dom,pfscan_ZP_dom,prints_ZP_dom	-	no_errors	TECTB	HGNC	ENSG00000119913				85	0	0	86	21	19.6262
ZDHHC6	0	genome.wustl.edu	37	10	114200363	114200363	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-4371-01A-01D-1158-08	TCGA-BR-4371-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	959629fa-0d96-4774-a99c-c5103a42d8d8	158777de-8f13-42b8-847c-a5951a7246a2	10	114200363	114200363	C	G	SNP	ZDHHC6	ENST00000369405	human	ensembl	74_37	-1	known	missense	c.610	p.A204P	1.000	NULL	pfam_Znf_DHHC_palmitoyltrfase,pfam_SH3_2,superfamily_SH3_domain,pfscan_Znf_DHHC_palmitoyltrfase	-	no_errors	ZDHHC6	HGNC	ENSG00000023041				163	1	0.609756	148	62	29.5238
CUBN	0	genome.wustl.edu	37	10	16911646	16911646	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4371-01A-01D-1158-08	TCGA-BR-4371-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	959629fa-0d96-4774-a99c-c5103a42d8d8	158777de-8f13-42b8-847c-a5951a7246a2	10	16911646	16911646	C	T	SNP	CUBN	ENST00000377833	human	ensembl	74_37	-1	known	missense	c.9443	p.R3148Q	0.042	superfamily_CUB_dom,smart_CUB_dom,pfscan_CUB_dom	pfam_CUB_dom,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,superfamily_CUB_dom,superfamily_Growth_fac_rcpt_N_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_CUB_dom,pfscan_CUB_dom,pfscan_EG-like_dom	-	no_errors	CUBN	HGNC	ENSG00000107611				231	0	0	289	43	12.9518
OGDHL	0	genome.wustl.edu	37	10	50953852	50953852	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4371-01A-01D-1158-08	TCGA-BR-4371-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	959629fa-0d96-4774-a99c-c5103a42d8d8	158777de-8f13-42b8-847c-a5951a7246a2	10	50953852	50953852	C	T	SNP	OGDHL	ENST00000374103	human	ensembl	74_37	-1	known	missense	c.1468	p.V490M	0.940	pfam_DH_E1,pirsf_2oxoglutarate_DH_E1,tigrfam_2oxoglutarate_DH_E1	pfam_DH_E1,pfam_Transketolase-like_Pyr-bd,smart_Transketolase-like_Pyr-bd,pirsf_2oxoglutarate_DH_E1,tigrfam_2oxoglutarate_DH_E1	-	no_errors	OGDHL	HGNC	ENSG00000197444				49	0	0	52	11	17.4603
PLCE1	0	genome.wustl.edu	37	10	96066442	96066442	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4371-01A-01D-1158-08	TCGA-BR-4371-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	959629fa-0d96-4774-a99c-c5103a42d8d8	158777de-8f13-42b8-847c-a5951a7246a2	10	96066442	96066442	C	T	SNP	PLCE1	ENST00000260766	human	ensembl	74_37	+1	known	nonsense	c.5881	p.R1961*	0.519	superfamily_C2_dom,smart_C2_dom,prints_Pinositol_PLipase_C	pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_Ras-assoc,pfam_RasGRF_CDC25,pfam_PLipase_C_EF-hand-like,pfam_C2_dom,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_Ras_GEF_dom,superfamily_C2_dom,smart_RasGRF_CDC25,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_dom,smart_Ras-assoc,pfscan_C2_dom,pfscan_Ras-assoc,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y,pfscan_RasGRF_CDC25,prints_Pinositol_PLipase_C	-	no_errors	PLCE1	HGNC	ENSG00000138193				31	0	0	27	12	30.7692
ENSG00000254506	0	genome.wustl.edu	37	11	101464816	101464816	+	RNA	SNP	G	G	T			TCGA-BR-4371-01A-01D-1158-08	TCGA-BR-4371-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	959629fa-0d96-4774-a99c-c5103a42d8d8	158777de-8f13-42b8-847c-a5951a7246a2	11	101464816	101464816	G	T	SNP	ENSG00000254506	ENST00000527374	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.998	-	-	-	no_errors	RP11-748H22.1	Clone_based_vega_gene	ENSG00000254506				27	0	0	21	9	30
BUD13	0	genome.wustl.edu	37	11	116631555	116631555	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4371-01A-01D-1158-08	TCGA-BR-4371-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	959629fa-0d96-4774-a99c-c5103a42d8d8	158777de-8f13-42b8-847c-a5951a7246a2	11	116631555	116631555	G	A	SNP	BUD13	ENST00000260210	human	ensembl	74_37	-1	known	missense	c.1150	p.R384W	0.000	NULL	pfam_Bud13	-	no_errors	BUD13	HGNC	ENSG00000137656				151	1	0.657895	79	65	45.1389
CXCR5	0	genome.wustl.edu	37	11	118764855	118764855	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4371-01A-01D-1158-08	TCGA-BR-4371-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	959629fa-0d96-4774-a99c-c5103a42d8d8	158777de-8f13-42b8-847c-a5951a7246a2	11	118764855	118764855	G	A	SNP	CXCR5	ENST00000292174	human	ensembl	74_37	+1	known	missense	c.602	p.R201H	0.013	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Chemokine_CXCR5	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Chemokine_CXCR5,prints_GPCR_Rhodpsn,prints_Chemokine_CXCR4,prints_ATII_rcpt	-	no_errors	CXCR5	HGNC	ENSG00000160683				76	0	0	68	7	9.33333
DKK3	0	genome.wustl.edu	37	11	11987447	11987447	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4371-01A-01D-1158-08	TCGA-BR-4371-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	959629fa-0d96-4774-a99c-c5103a42d8d8	158777de-8f13-42b8-847c-a5951a7246a2	11	11987447	11987447	G	A	SNP	DKK3	ENST00000326932	human	ensembl	74_37	-1	known	missense	c.739	p.R247W	1.000	NULL	pfam_Dickkopf_N	-	no_errors	DKK3	HGNC	ENSG00000050165				63	0	0	37	30	44.7761
PTPRJ	0	genome.wustl.edu	37	11	48171647	48171647	+	Splice_Site	SNP	G	G	T			TCGA-BR-4371-01A-01D-1158-08	TCGA-BR-4371-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	959629fa-0d96-4774-a99c-c5103a42d8d8	158777de-8f13-42b8-847c-a5951a7246a2	11	48171647	48171647	G	T	SNP	PTPRJ	ENST00000418331	human	ensembl	74_37	+1	known	splice_site	c.3051-1	e18-1	1.000	-	-	-	no_errors	PTPRJ	HGNC	ENSG00000149177				92	0	0	66	55	45.4545
OR4A5	0	genome.wustl.edu	37	11	51411489	51411489	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4371-01A-01D-1158-08	TCGA-BR-4371-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	959629fa-0d96-4774-a99c-c5103a42d8d8	158777de-8f13-42b8-847c-a5951a7246a2	11	51411489	51411489	A	C	SNP	OR4A5	ENST00000319760	human	ensembl	74_37	-1	known	missense	c.907	p.L303V	0.000	NULL	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4A5	HGNC	ENSG00000221840				19	0	0	14	6	30
OR4A5	0	genome.wustl.edu	37	11	51411502	51411502	+	Silent	SNP	G	G	A			TCGA-BR-4371-01A-01D-1158-08	TCGA-BR-4371-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	959629fa-0d96-4774-a99c-c5103a42d8d8	158777de-8f13-42b8-847c-a5951a7246a2	11	51411502	51411502	G	A	SNP	OR4A5	ENST00000319760	human	ensembl	74_37	-1	known	silent	c.894	p.L298	0.000	NULL	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4A5	HGNC	ENSG00000221840				28	0	0	25	10	28.5714
OR5D16	0	genome.wustl.edu	37	11	55606944	55606944	+	Silent	SNP	C	C	A			TCGA-BR-4371-01A-01D-1158-08	TCGA-BR-4371-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	959629fa-0d96-4774-a99c-c5103a42d8d8	158777de-8f13-42b8-847c-a5951a7246a2	11	55606944	55606944	C	A	SNP	OR5D16	ENST00000378396	human	ensembl	74_37	+1	known	silent	c.717	p.V239	0.124	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR5D16	HGNC	ENSG00000205029				145	0	0	152	24	13.6364
CTTN	0	genome.wustl.edu	37	11	70279321	70279321	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4371-01A-01D-1158-08	TCGA-BR-4371-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	959629fa-0d96-4774-a99c-c5103a42d8d8	158777de-8f13-42b8-847c-a5951a7246a2	11	70279321	70279321	G	A	SNP	CTTN	ENST00000301843	human	ensembl	74_37	+1	known	missense	c.1381	p.G461S	0.985	superfamily_SH3_domain	pfam_Hs1_Cortactin,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_Hs1_Cortactin,pfscan_SH3_domain,prints_SH3_domain,prints_p67phox	-	no_errors	CTTN	HGNC	ENSG00000085733				52	0	0	44	19	30.1587
PDE2A	0	genome.wustl.edu	37	11	72295734	72295734	+	Silent	SNP	C	C	T			TCGA-BR-4371-01A-01D-1158-08	TCGA-BR-4371-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	959629fa-0d96-4774-a99c-c5103a42d8d8	158777de-8f13-42b8-847c-a5951a7246a2	11	72295734	72295734	C	T	SNP	PDE2A	ENST00000334456	human	ensembl	74_37	-1	known	silent	c.1398	p.A466	0.570	pfam_GAF,smart_GAF	pfam_PDEase_catalytic_dom,pfam_GAF,smart_GAF,smart_HD/PDEase_dom,prints_PDEase	-	no_errors	PDE2A	HGNC	ENSG00000186642				48	0	0	53	15	22.0588
SBF2-AS1	0	genome.wustl.edu	37	11	9829473	9829473	+	RNA	SNP	C	C	T			TCGA-BR-4371-01A-01D-1158-08	TCGA-BR-4371-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	959629fa-0d96-4774-a99c-c5103a42d8d8	158777de-8f13-42b8-847c-a5951a7246a2	11	9829473	9829473	C	T	SNP	SBF2-AS1	ENST00000498905	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SBF2-AS1	HGNC	ENSG00000246273				12	0	0	16	6	27.2727
TBX5	0	genome.wustl.edu	37	12	114837435	114837435	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4371-01A-01D-1158-08	TCGA-BR-4371-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	959629fa-0d96-4774-a99c-c5103a42d8d8	158777de-8f13-42b8-847c-a5951a7246a2	12	114837435	114837435	C	T	SNP	TBX5	ENST00000310346	human	ensembl	74_37	-1	known	missense	c.245	p.R82Q	1.000	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box,prints_TF_T-box	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box,prints_TF_T-box	-	no_errors	TBX5	HGNC	ENSG00000089225				177	0	0	158	26	14.1304
DNAH10	0	genome.wustl.edu	37	12	124382427	124382427	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4371-01A-01D-1158-08	TCGA-BR-4371-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	959629fa-0d96-4774-a99c-c5103a42d8d8	158777de-8f13-42b8-847c-a5951a7246a2	12	124382427	124382427	C	T	SNP	DNAH10	ENST00000409039	human	ensembl	74_37	+1	known	missense	c.9037	p.R3013C	0.999	superfamily_P-loop_NTPase	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,superfamily_PyrdxlP-dep_Trfase,smart_AAA+_ATPase	-	no_errors	DNAH10	HGNC	ENSG00000197653				81	0	0	51	37	42.0455
KIAA1467	0	genome.wustl.edu	37	12	13215850	13215850	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4371-01A-01D-1158-08	TCGA-BR-4371-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	959629fa-0d96-4774-a99c-c5103a42d8d8	158777de-8f13-42b8-847c-a5951a7246a2	12	13215850	13215850	C	A	SNP	KIAA1467	ENST00000197268	human	ensembl	74_37	+1	known	missense	c.793	p.P265T	1.000	superfamily_Quinonprotein_ADH-like_supfam	superfamily_Quinonprotein_ADH-like_supfam	-	no_errors	KIAA1467	HGNC	ENSG00000084444				378	0	0	271	176	39.3736
FKBP4	0	genome.wustl.edu	37	12	2912353	2912353	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4371-01A-01D-1158-08	TCGA-BR-4371-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	959629fa-0d96-4774-a99c-c5103a42d8d8	158777de-8f13-42b8-847c-a5951a7246a2	12	2912353	2912353	G	A	SNP	FKBP4	ENST00000001008	human	ensembl	74_37	+1	known	missense	c.1309	p.D437N	0.118	NULL	pfam_PPIase_FKBP_dom,pfam_TPR_1,pfam_TPR_2,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_PPIase_FKBP_dom	-	no_errors	FKBP4	HGNC	ENSG00000004478				11	0	0	9	11	55
TMTC1	0	genome.wustl.edu	37	12	29665041	29665041	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4371-01A-01D-1158-08	TCGA-BR-4371-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	959629fa-0d96-4774-a99c-c5103a42d8d8	158777de-8f13-42b8-847c-a5951a7246a2	12	29665041	29665041	C	T	SNP	TMTC1	ENST00000256062	human	ensembl	74_37	-1	known	missense	c.2119	p.A707T	0.982	smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	pfam_TPR_1,pfam_TPR_2,pfam_DUF1736,pfam_PIK-rel_kinase_FAT,pfam_TPR-3,smart_HAT,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TMTC1	HGNC	ENSG00000133687				226	0	0	195	76	28.0443
MIP	0	genome.wustl.edu	37	12	56845179	56845179	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4371-01A-01D-1158-08	TCGA-BR-4371-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	959629fa-0d96-4774-a99c-c5103a42d8d8	158777de-8f13-42b8-847c-a5951a7246a2	12	56845179	56845179	C	T	SNP	MIP	ENST00000257979	human	ensembl	74_37	-1	known	missense	c.677	p.R226Q	1.000	superfamily_Aquaporin-like	pfam_MIP,superfamily_Aquaporin-like,prints_MIP,tigrfam_MIP	-	no_errors	MIP	HGNC	ENSG00000135517				132	0	0	80	59	42.446
NAB2	0	genome.wustl.edu	37	12	57487217	57487217	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4371-01A-01D-1158-08	TCGA-BR-4371-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	959629fa-0d96-4774-a99c-c5103a42d8d8	158777de-8f13-42b8-847c-a5951a7246a2	12	57487217	57487217	C	T	SNP	NAB2	ENST00000300131	human	ensembl	74_37	+1	known	missense	c.1304	p.P435L	1.000	NULL	pfam_NAB_co-repressor_dom,pfam_Nab_N,superfamily_SAM/pointed	-	no_errors	NAB2	HGNC	ENSG00000166886				18	0	0	8	5	38.4615
PLEKHG6	0	genome.wustl.edu	37	12	6436922	6436922	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-4371-01A-01D-1158-08	TCGA-BR-4371-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	959629fa-0d96-4774-a99c-c5103a42d8d8	158777de-8f13-42b8-847c-a5951a7246a2	12	6436922	6436922	G	C	SNP	PLEKHG6	ENST00000011684	human	ensembl	74_37	+1	known	missense	c.2173	p.A725P	0.001	NULL	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PLEKHG6	HGNC	ENSG00000008323				32	0	0	28	17	37.7778
NUP107	0	genome.wustl.edu	37	12	69128509	69128509	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4371-01A-01D-1158-08	TCGA-BR-4371-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	959629fa-0d96-4774-a99c-c5103a42d8d8	158777de-8f13-42b8-847c-a5951a7246a2	12	69128509	69128509	G	A	SNP	NUP107	ENST00000229179	human	ensembl	74_37	+1	known	missense	c.2284	p.E762K	1.000	pfam_Nup84_Nup100	pfam_Nup84_Nup100	-	no_errors	NUP107	HGNC	ENSG00000111581				75	0	0	46	41	47.1264
BEST3	0	genome.wustl.edu	37	12	70071027	70071027	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4371-01A-01D-1158-08	TCGA-BR-4371-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	959629fa-0d96-4774-a99c-c5103a42d8d8	158777de-8f13-42b8-847c-a5951a7246a2	12	70071027	70071027	C	T	SNP	BEST3	ENST00000330891	human	ensembl	74_37	-1	known	missense	c.647	p.R216Q	0.335	pfam_Bestrophin/UPF0187	pfam_Bestrophin/UPF0187	-	no_errors	BEST3	HGNC	ENSG00000127325				17	0	0	13	8	38.0952
TPTE2	0	genome.wustl.edu	37	13	19997247	19997247	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4371-01A-01D-1158-08	TCGA-BR-4371-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	959629fa-0d96-4774-a99c-c5103a42d8d8	158777de-8f13-42b8-847c-a5951a7246a2	13	19997247	19997247	A	C	SNP	TPTE2	ENST00000382977	human	ensembl	74_37	-1	known	missense	c.1524	p.I508M	0.629	pfam_Tensin_phosphatase_C2-dom,superfamily_C2_dom,pfscan_Tensin_phosphatase_C2-dom	pfam_Tensin_phosphatase_C2-dom,pfam_Ion_trans_dom,pfam_Dual-sp_phosphatase_cat-dom,superfamily_C2_dom,pfscan_Tyr/Dual-sp_Pase,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	TPTE2	HGNC	ENSG00000132958				84	0	0	101	18	15.1261
SLITRK6	0	genome.wustl.edu	37	13	86369596	86369596	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4371-01A-01D-1158-08	TCGA-BR-4371-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	959629fa-0d96-4774-a99c-c5103a42d8d8	158777de-8f13-42b8-847c-a5951a7246a2	13	86369596	86369596	G	A	SNP	SLITRK6	ENST00000400286	human	ensembl	74_37	-1	known	missense	c.1048	p.R350C	0.951	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	SLITRK6	HGNC	ENSG00000184564				161	0	0	195	19	8.8785
GPC5	0	genome.wustl.edu	37	13	92797214	92797214	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4371-01A-01D-1158-08	TCGA-BR-4371-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	959629fa-0d96-4774-a99c-c5103a42d8d8	158777de-8f13-42b8-847c-a5951a7246a2	13	92797214	92797214	A	C	SNP	GPC5	ENST00000377067	human	ensembl	74_37	+1	known	missense	c.1533	p.E511D	1.000	pfam_Glypican	pfam_Glypican	-	no_errors	GPC5	HGNC	ENSG00000179399				113	0	0	136	23	14.4654
OR4M1	0	genome.wustl.edu	37	14	20249146	20249146	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4371-01A-01D-1158-08	TCGA-BR-4371-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	959629fa-0d96-4774-a99c-c5103a42d8d8	158777de-8f13-42b8-847c-a5951a7246a2	14	20249146	20249146	T	C	SNP	OR4M1	ENST00000315957	human	ensembl	74_37	+1	known	missense	c.665	p.L222P	0.697	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4M1	HGNC	ENSG00000176299				408	0	0	400	47	10.5145
SLC22A17	0	genome.wustl.edu	37	14	23818627	23818627	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4371-01A-01D-1158-08	TCGA-BR-4371-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	959629fa-0d96-4774-a99c-c5103a42d8d8	158777de-8f13-42b8-847c-a5951a7246a2	14	23818627	23818627	C	T	SNP	SLC22A17	ENST00000206544	human	ensembl	74_37	-1	known	missense	c.380	p.R127H	0.997	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC22A17	HGNC	ENSG00000092096				25	0	0	29	12	29.2683
JPH4	0	genome.wustl.edu	37	14	24040633	24040633	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4371-01A-01D-1158-08	TCGA-BR-4371-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	959629fa-0d96-4774-a99c-c5103a42d8d8	158777de-8f13-42b8-847c-a5951a7246a2	14	24040633	24040633	G	A	SNP	JPH4	ENST00000356300	human	ensembl	74_37	-1	known	missense	c.1307	p.T436M	0.999	pirsf_Junctophilin	pfam_MORN,smart_MORN,pirsf_Junctophilin	-	no_errors	JPH4	HGNC	ENSG00000092051				61	0	0	45	30	40
NKX2-1	0	genome.wustl.edu	37	14	36987176	36987176	+	Silent	SNP	G	G	A			TCGA-BR-4371-01A-01D-1158-08	TCGA-BR-4371-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	959629fa-0d96-4774-a99c-c5103a42d8d8	158777de-8f13-42b8-847c-a5951a7246a2	14	36987176	36987176	G	A	SNP	NKX2-1	ENST00000354822	human	ensembl	74_37	-1	known	silent	c.513	p.G171	1.000	superfamily_Homeodomain-like	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa	-	no_errors	NKX2-1	HGNC	ENSG00000136352				29	0	0	25	14	35.8974
PTGER2	0	genome.wustl.edu	37	14	52781961	52781961	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4371-01A-01D-1158-08	TCGA-BR-4371-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	959629fa-0d96-4774-a99c-c5103a42d8d8	158777de-8f13-42b8-847c-a5951a7246a2	14	52781961	52781961	G	A	SNP	PTGER2	ENST00000245457	human	ensembl	74_37	+1	known	missense	c.695	p.S232N	0.028	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Prostglndn_EP2_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_Prostglndn_EP2_rcpt,prints_Prostanoid_rcpt,prints_GPCR_Rhodpsn	-	no_errors	PTGER2	HGNC	ENSG00000125384				31	0	0	39	14	26.4151
TIMM9	0	genome.wustl.edu	37	14	58875881	58875881	+	Silent	SNP	G	G	A			TCGA-BR-4371-01A-01D-1158-08	TCGA-BR-4371-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	959629fa-0d96-4774-a99c-c5103a42d8d8	158777de-8f13-42b8-847c-a5951a7246a2	14	58875881	58875881	G	A	SNP	TIMM9	ENST00000395159	human	ensembl	74_37	-1	known	silent	c.141	p.T47	1.000	pfam_Tim10/DDP_fam_Znf,superfamily_Tim10/DDP_fam_Znf	pfam_Tim10/DDP_fam_Znf,superfamily_Tim10/DDP_fam_Znf	-	no_errors	TIMM9	HGNC	ENSG00000100575				53	0	0	66	4	5.71429
PPP4R4	0	genome.wustl.edu	37	14	94674856	94674856	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4371-01A-01D-1158-08	TCGA-BR-4371-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	959629fa-0d96-4774-a99c-c5103a42d8d8	158777de-8f13-42b8-847c-a5951a7246a2	14	94674856	94674856	C	T	SNP	PPP4R4	ENST00000304338	human	ensembl	74_37	+1	known	nonsense	c.247	p.R83*	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold,pfscan_HEAT_type_2	-	no_errors	PPP4R4	HGNC	ENSG00000119698				42	0	0	35	26	42.623
ADAMTS17	0	genome.wustl.edu	37	15	100692874	100692874	+	Silent	SNP	G	G	A			TCGA-BR-4371-01A-01D-1158-08	TCGA-BR-4371-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	959629fa-0d96-4774-a99c-c5103a42d8d8	158777de-8f13-42b8-847c-a5951a7246a2	15	100692874	100692874	G	A	SNP	ADAMTS17	ENST00000268070	human	ensembl	74_37	-1	known	silent	c.1416	p.A472	0.834	smart_ADAM_Cys-rich	pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_ADAM_Cys-rich,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS17	HGNC	ENSG00000140470				94	0	0	118	29	19.7279
MKRN3	0	genome.wustl.edu	37	15	23812297	23812297	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4371-01A-01D-1158-08	TCGA-BR-4371-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	959629fa-0d96-4774-a99c-c5103a42d8d8	158777de-8f13-42b8-847c-a5951a7246a2	15	23812297	23812297	G	T	SNP	MKRN3	ENST00000314520	human	ensembl	74_37	+1	known	missense	c.1368	p.M456I	0.198	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_CCCH,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	MKRN3	HGNC	ENSG00000179455				126	0	0	100	36	26.4706
APBA2	0	genome.wustl.edu	37	15	29346159	29346159	+	Silent	SNP	T	T	A			TCGA-BR-4371-01A-01D-1158-08	TCGA-BR-4371-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	959629fa-0d96-4774-a99c-c5103a42d8d8	158777de-8f13-42b8-847c-a5951a7246a2	15	29346159	29346159	T	A	SNP	APBA2	ENST00000558259	human	ensembl	74_37	+1	known	silent	c.72	p.P24	0.474	NULL	pfam_PTB/PI_dom,pfam_PDZ,superfamily_PDZ,smart_PTB/PI_dom,smart_PDZ,pfscan_PDZ,pfscan_PTB/PI_dom	-	no_errors	APBA2	HGNC	ENSG00000034053				70	0	0	56	19	25.3333
RYR3	0	genome.wustl.edu	37	15	33936554	33936554	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4371-01A-01D-1158-08	TCGA-BR-4371-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	959629fa-0d96-4774-a99c-c5103a42d8d8	158777de-8f13-42b8-847c-a5951a7246a2	15	33936554	33936554	G	A	SNP	RYR3	ENST00000389232	human	ensembl	74_37	+1	known	missense	c.3599	p.R1200H	1.000	pfam_SPRY_rcpt,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY	pfam_Ryanodine_rcpt,pfam_Ca-rel_channel,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ConA-like_lec_gl_sf,superfamily_4_helix_cytokine-like_core,superfamily_ARM-type_fold,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_hand_dom,pfscan_MIR_motif	-	no_errors	RYR3	HGNC	ENSG00000198838				17	0	0	24	11	31.4286
UNC13C	0	genome.wustl.edu	37	15	54592538	54592538	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4371-01A-01D-1158-08	TCGA-BR-4371-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	959629fa-0d96-4774-a99c-c5103a42d8d8	158777de-8f13-42b8-847c-a5951a7246a2	15	54592538	54592538	G	A	SNP	UNC13C	ENST00000260323	human	ensembl	74_37	+1	known	missense	c.4235	p.R1412H	1.000	NULL	pfam_Munc13_subgr_dom-2,pfam_Ca-dep_secretion_activator,pfam_C2_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_C2_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_C2_dom,pfscan_C2_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,prints_C2_dom	-	no_errors	UNC13C	HGNC	ENSG00000137766				14	0	0	10	4	28.5714
FOXB1	0	genome.wustl.edu	37	15	60297453	60297453	+	Silent	SNP	C	C	T			TCGA-BR-4371-01A-01D-1158-08	TCGA-BR-4371-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	959629fa-0d96-4774-a99c-c5103a42d8d8	158777de-8f13-42b8-847c-a5951a7246a2	15	60297453	60297453	C	T	SNP	FOXB1	ENST00000396057	human	ensembl	74_37	+1	known	silent	c.291	p.F97	1.000	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXB1	HGNC	ENSG00000171956				69	0	0	76	34	30.9091
ARID3B	0	genome.wustl.edu	37	15	74836809	74836809	+	Silent	SNP	C	C	T			TCGA-BR-4371-01A-01D-1158-08	TCGA-BR-4371-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	959629fa-0d96-4774-a99c-c5103a42d8d8	158777de-8f13-42b8-847c-a5951a7246a2	15	74836809	74836809	C	T	SNP	ARID3B	ENST00000346246	human	ensembl	74_37	+1	known	silent	c.532	p.L178	0.994	NULL	pfam_ARID/BRIGHT_DNA-bd,superfamily_ARID/BRIGHT_DNA-bd,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID3B	HGNC	ENSG00000179361				64	0	0	59	15	20.2703
FSD2	0	genome.wustl.edu	37	15	83440851	83440851	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4371-01A-01D-1158-08	TCGA-BR-4371-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	959629fa-0d96-4774-a99c-c5103a42d8d8	158777de-8f13-42b8-847c-a5951a7246a2	15	83440851	83440851	T	G	SNP	FSD2	ENST00000334574	human	ensembl	74_37	-1	known	missense	c.1241	p.D414A	0.889	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Fibronectin_type3,prints_Butyrophylin	-	no_errors	FSD2	HGNC	ENSG00000186628				18	0	0	17	9	34.6154
BTBD1	0	genome.wustl.edu	37	15	83735774	83735774	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-4371-01A-01D-1158-08	TCGA-BR-4371-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	959629fa-0d96-4774-a99c-c5103a42d8d8	158777de-8f13-42b8-847c-a5951a7246a2	15	83735774	83735774	G	C	SNP	BTBD1	ENST00000261721	human	ensembl	74_37	-1	known	missense	c.130	p.P44A	1.000	superfamily_BTB/POZ_fold	pfam_PHR,pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,pfscan_BTB/POZ-like	-	no_errors	BTBD1	HGNC	ENSG00000064726				37	0	0	40	8	16.6667
RRN3P2	0	genome.wustl.edu	37	16	29110458	29110458	+	RNA	SNP	T	T	C			TCGA-BR-4371-01A-01D-1158-08	TCGA-BR-4371-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	959629fa-0d96-4774-a99c-c5103a42d8d8	158777de-8f13-42b8-847c-a5951a7246a2	16	29110458	29110458	T	C	SNP	RRN3P2	ENST00000427965	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.991	-	-	-	no_errors	RRN3P2	HGNC	ENSG00000103472				42	0	0	51	3	5.55556
ABCC11	0	genome.wustl.edu	37	16	48234327	48234327	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4371-01A-01D-1158-08	TCGA-BR-4371-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	959629fa-0d96-4774-a99c-c5103a42d8d8	158777de-8f13-42b8-847c-a5951a7246a2	16	48234327	48234327	C	T	SNP	ABCC11	ENST00000356608	human	ensembl	74_37	-1	known	missense	c.1942	p.V648I	0.742	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,superfamily_ABC1_TM_dom,smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_P-loop_NTPase,superfamily_ABC1_TM_dom,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom	-	no_errors	ABCC11	HGNC	ENSG00000121270				58	0	0	51	35	40.6977
CARHSP1	0	genome.wustl.edu	37	16	8949149	8949149	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4371-01A-01D-1158-08	TCGA-BR-4371-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	959629fa-0d96-4774-a99c-c5103a42d8d8	158777de-8f13-42b8-847c-a5951a7246a2	16	8949149	8949149	C	T	SNP	CARHSP1	ENST00000311052	human	ensembl	74_37	-1	known	missense	c.316	p.E106K	1.000	pfam_CSP_DNA-bd,superfamily_NA-bd_OB-fold,smart_Cold_shock_prot	pfam_CSP_DNA-bd,superfamily_NA-bd_OB-fold,smart_Cold_shock_prot	-	no_errors	CARHSP1	HGNC	ENSG00000153048				62	0	0	60	23	27.7108
DNAH9	0	genome.wustl.edu	37	17	11687773	11687773	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4371-01A-01D-1158-08	TCGA-BR-4371-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	959629fa-0d96-4774-a99c-c5103a42d8d8	158777de-8f13-42b8-847c-a5951a7246a2	17	11687773	11687773	C	T	SNP	DNAH9	ENST00000262442	human	ensembl	74_37	+1	known	nonsense	c.7978	p.Q2660*	1.000	superfamily_P-loop_NTPase	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH9	HGNC	ENSG00000007174				231	0	0	213	67	23.9286
TOM1L2	0	genome.wustl.edu	37	17	17797056	17797056	+	Silent	SNP	G	G	A			TCGA-BR-4371-01A-01D-1158-08	TCGA-BR-4371-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	959629fa-0d96-4774-a99c-c5103a42d8d8	158777de-8f13-42b8-847c-a5951a7246a2	17	17797056	17797056	G	A	SNP	TOM1L2	ENST00000379504	human	ensembl	74_37	-1	known	silent	c.285	p.I95	0.136	pfam_VHS,superfamily_ENTH_VHS,smart_VHS_subgr,pirsf_TOM1,pfscan_VHS	pfam_VHS,pfam_GAT,superfamily_ENTH_VHS,smart_VHS_subgr,pirsf_TOM1,pfscan_GAT,pfscan_VHS	-	no_errors	TOM1L2	HGNC	ENSG00000175662				91	0	0	70	42	37.5
NUFIP2	0	genome.wustl.edu	37	17	27620876	27620876	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4371-01A-01D-1158-08	TCGA-BR-4371-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	959629fa-0d96-4774-a99c-c5103a42d8d8	158777de-8f13-42b8-847c-a5951a7246a2	17	27620876	27620876	C	T	SNP	NUFIP2	ENST00000225388	human	ensembl	74_37	-1	known	missense	c.202	p.A68T	1.000	NULL	NULL	-	no_errors	NUFIP2	HGNC	ENSG00000108256				233	0	0	177	128	41.9672
NF1	0	genome.wustl.edu	37	17	29533378	29533378	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4371-01A-01D-1158-08	TCGA-BR-4371-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	959629fa-0d96-4774-a99c-c5103a42d8d8	158777de-8f13-42b8-847c-a5951a7246a2	17	29533378	29533378	C	T	SNP	NF1	ENST00000358273	human	ensembl	74_37	+1	known	nonsense	c.1381	p.R461*	1.000	superfamily_ARM-type_fold	pfam_RasGAP,superfamily_Rho_GTPase_activation_prot,superfamily_ARM-type_fold,superfamily_CRAL-TRIO_dom,smart_RasGAP,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom,pfscan_RasGAP	-	no_errors	NF1	HGNC	ENSG00000196712				150	0	0	94	84	47.191
NF1	0	genome.wustl.edu	37	17	29685544	29685544	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4371-01A-01D-1158-08	TCGA-BR-4371-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	959629fa-0d96-4774-a99c-c5103a42d8d8	158777de-8f13-42b8-847c-a5951a7246a2	17	29685544	29685544	C	T	SNP	NF1	ENST00000358273	human	ensembl	74_37	+1	known	nonsense	c.8017	p.Q2673*	1.000	superfamily_ARM-type_fold	pfam_RasGAP,superfamily_Rho_GTPase_activation_prot,superfamily_ARM-type_fold,superfamily_CRAL-TRIO_dom,smart_RasGAP,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom,pfscan_RasGAP	-	no_errors	NF1	HGNC	ENSG00000196712				60	0	0	50	30	37.5
GGNBP2	0	genome.wustl.edu	37	17	34923606	34923606	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4371-01A-01D-1158-08	TCGA-BR-4371-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	959629fa-0d96-4774-a99c-c5103a42d8d8	158777de-8f13-42b8-847c-a5951a7246a2	17	34923606	34923606	G	A	SNP	GGNBP2	ENST00000304718	human	ensembl	74_37	+1	known	missense	c.632	p.R211Q	1.000	NULL	NULL	-	no_errors	GGNBP2	HGNC	ENSG00000005955				85	0	0	69	52	42.9752
ICAM2	0	genome.wustl.edu	37	17	62081258	62081258	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4371-01A-01D-1158-08	TCGA-BR-4371-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	959629fa-0d96-4774-a99c-c5103a42d8d8	158777de-8f13-42b8-847c-a5951a7246a2	17	62081258	62081258	A	G	SNP	ICAM2	ENST00000412356	human	ensembl	74_37	-1	known	missense	c.395	p.I132T	0.803	prints_ICAM_VCAM_N,prints_ICAM	pfam_ICAM_N,prints_ICAM_VCAM_N,prints_ICAM	-	no_errors	ICAM2	HGNC	ENSG00000108622				55	0	0	26	21	44.6809
SEC14L1	0	genome.wustl.edu	37	17	75209494	75209494	+	Silent	SNP	C	C	T			TCGA-BR-4371-01A-01D-1158-08	TCGA-BR-4371-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	959629fa-0d96-4774-a99c-c5103a42d8d8	158777de-8f13-42b8-847c-a5951a7246a2	17	75209494	75209494	C	T	SNP	SEC14L1	ENST00000392476	human	ensembl	74_37	+1	known	silent	c.1962	p.D654	0.998	superfamily_GOLD,pfscan_GOLD	pfam_PRELI/MSF1,pfam_CRAL-TRIO_dom,pfam_CRAL/TRIO_N_dom,superfamily_CRAL-TRIO_dom,superfamily_CRAL/TRIO_N_dom,superfamily_GOLD,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom,pfscan_GOLD,pfscan_PRELI/MSF1	-	no_errors	SEC14L1	HGNC	ENSG00000129657				40	0	0	41	6	12.766
SLC14A2	0	genome.wustl.edu	37	18	43204733	43204733	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4371-01A-01D-1158-08	TCGA-BR-4371-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	959629fa-0d96-4774-a99c-c5103a42d8d8	158777de-8f13-42b8-847c-a5951a7246a2	18	43204733	43204733	C	T	SNP	SLC14A2	ENST00000255226	human	ensembl	74_37	+1	known	missense	c.104	p.P35L	1.000	NULL	pfam_Urea_transporter	-	no_errors	SLC14A2	HGNC	ENSG00000132874				125	0	0	66	80	54.7945
SMAD2	0	genome.wustl.edu	37	18	45368211	45368211	+	Nonsense_Mutation	SNP	G	G	C			TCGA-BR-4371-01A-01D-1158-08	TCGA-BR-4371-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	959629fa-0d96-4774-a99c-c5103a42d8d8	158777de-8f13-42b8-847c-a5951a7246a2	18	45368211	45368211	G	C	SNP	SMAD2	ENST00000262160	human	ensembl	74_37	-1	known	nonsense	c.1391	p.S464*	1.000	pfscan_SMAD_dom_Dwarfin-type	pfam_SMAD_dom_Dwarfin-type,pfam_MAD_homology1_Dwarfin-type,pfam_Interferon_reg_factor-3,superfamily_SMAD_FHA_domain,superfamily_MAD_homology_MH1,smart_MAD_homology1_Dwarfin-type,smart_SMAD_dom_Dwarfin-type,pfscan_MAD_homology_MH1,pfscan_SMAD_dom_Dwarfin-type	-	no_errors	SMAD2	HGNC	ENSG00000175387				80	0	0	62	19	23.4568
SERPINB12	0	genome.wustl.edu	37	18	61232706	61232706	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4371-01A-01D-1158-08	TCGA-BR-4371-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	959629fa-0d96-4774-a99c-c5103a42d8d8	158777de-8f13-42b8-847c-a5951a7246a2	18	61232706	61232706	C	T	SNP	SERPINB12	ENST00000269491	human	ensembl	74_37	+1	known	missense	c.674	p.T225M	0.037	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	-	no_errors	SERPINB12	HGNC	ENSG00000166634				136	0	0	68	105	60.6936
EIF3G	0	genome.wustl.edu	37	19	10226419	10226419	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4371-01A-01D-1158-08	TCGA-BR-4371-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	959629fa-0d96-4774-a99c-c5103a42d8d8	158777de-8f13-42b8-847c-a5951a7246a2	19	10226419	10226419	G	A	SNP	EIF3G	ENST00000253108	human	ensembl	74_37	-1	known	missense	c.781	p.P261S	1.000	pfam_RRM_dom,smart_RRM_dom,pirsf_eIF3_g,pfscan_RRM_dom	pfam_eIF3g_N,pfam_RRM_dom,smart_RRM_dom,pirsf_eIF3_g,pfscan_RRM_dom	-	no_errors	EIF3G	HGNC	ENSG00000130811				171	0	0	178	70	28.2258
CACNA1A	0	genome.wustl.edu	37	19	13323247	13323247	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4371-01A-01D-1158-08	TCGA-BR-4371-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	959629fa-0d96-4774-a99c-c5103a42d8d8	158777de-8f13-42b8-847c-a5951a7246a2	19	13323247	13323247	G	A	SNP	CACNA1A	ENST00000360228	human	ensembl	74_37	-1	known	missense	c.6140	p.P2047L	0.997	NULL	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCCAlpha1,prints_VDCC_P/Q_a1su	-	no_errors	CACNA1A	HGNC	ENSG00000141837				21	0	0	22	24	52.1739
ZNF729	0	genome.wustl.edu	37	19	22498765	22498765	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4371-01A-01D-1158-08	TCGA-BR-4371-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	959629fa-0d96-4774-a99c-c5103a42d8d8	158777de-8f13-42b8-847c-a5951a7246a2	19	22498765	22498765	A	G	SNP	ZNF729	ENST00000601693	human	ensembl	74_37	+1	novel	missense	c.2546	p.K849R	1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF729	HGNC	ENSG00000196350				82	0	0	106	16	13.1148
TJP3	0	genome.wustl.edu	37	19	3746572	3746572	+	Silent	SNP	C	C	A			TCGA-BR-4371-01A-01D-1158-08	TCGA-BR-4371-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	959629fa-0d96-4774-a99c-c5103a42d8d8	158777de-8f13-42b8-847c-a5951a7246a2	19	3746572	3746572	C	A	SNP	TJP3	ENST00000262968	human	ensembl	74_37	+1	known	silent	c.2199	p.P733	0.054	pfam_GK/Ca_channel_bsu,superfamily_P-loop_NTPase,smart_GK/Ca_channel_bsu,pfscan_Guanylate_kin-like	pfam_PDZ,pfam_SH3_2,pfam_GK/Ca_channel_bsu,superfamily_PDZ,superfamily_P-loop_NTPase,superfamily_SH3_domain,smart_PDZ,smart_SH3_domain,smart_GK/Ca_channel_bsu,pfscan_PDZ,pfscan_SH3_domain,pfscan_Guanylate_kin-like,prints_ZonOcculS3,prints_ZonOcculdens	-	no_errors	TJP3	HGNC	ENSG00000105289				46	0	0	66	4	5.71429
ZBTB7A	0	genome.wustl.edu	37	19	4048234	4048234	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-4371-01A-01D-1158-08	TCGA-BR-4371-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	959629fa-0d96-4774-a99c-c5103a42d8d8	158777de-8f13-42b8-847c-a5951a7246a2	19	4048234	4048234	T	G	SNP	ZBTB7A	ENST00000322357	human	ensembl	74_37	-1	known	missense	c.1271	p.K424T	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_BTB_POZ,pfam_Znf_C2H2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB7A	HGNC	ENSG00000178951				37	0	0	46	28	37.8378
HIPK4	0	genome.wustl.edu	37	19	40890034	40890034	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4371-01A-01D-1158-08	TCGA-BR-4371-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	959629fa-0d96-4774-a99c-c5103a42d8d8	158777de-8f13-42b8-847c-a5951a7246a2	19	40890034	40890034	C	T	SNP	HIPK4	ENST00000291823	human	ensembl	74_37	-1	known	missense	c.478	p.G160R	0.966	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	HIPK4	HGNC	ENSG00000160396				113	0	0	131	30	18.6335
GPR4	0	genome.wustl.edu	37	19	46095082	46095082	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4371-01A-01D-1158-08	TCGA-BR-4371-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	959629fa-0d96-4774-a99c-c5103a42d8d8	158777de-8f13-42b8-847c-a5951a7246a2	19	46095082	46095082	C	T	SNP	GPR4	ENST00000323040	human	ensembl	74_37	-1	known	missense	c.43	p.V15M	0.674	prints_GPR4_orph	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_GPR4_orph,prints_GPCR_Rhodpsn,prints_Psych_rcpt	-	no_errors	GPR4	HGNC	ENSG00000177464				73	0	0	101	22	17.8862
SLC17A7	0	genome.wustl.edu	37	19	49939974	49939974	+	Silent	SNP	C	C	T			TCGA-BR-4371-01A-01D-1158-08	TCGA-BR-4371-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	959629fa-0d96-4774-a99c-c5103a42d8d8	158777de-8f13-42b8-847c-a5951a7246a2	19	49939974	49939974	C	T	SNP	SLC17A7	ENST00000221485	human	ensembl	74_37	-1	known	silent	c.147	p.P49	1.000	superfamily_MFS_dom_general_subst_transpt	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC17A7	HGNC	ENSG00000104888				120	0	0	147	39	20.9677
SIGLEC5	0	genome.wustl.edu	37	19	52115642	52115642	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4371-01A-01D-1158-08	TCGA-BR-4371-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	959629fa-0d96-4774-a99c-c5103a42d8d8	158777de-8f13-42b8-847c-a5951a7246a2	19	52115642	52115642	C	T	SNP	SIGLEC5	ENST00000222107	human	ensembl	74_37	-1	known	missense	c.1498	p.G500R	0.000	NULL	pfam_Ig_V-set,pfam_Immunoglobulin,pfam_CD80_C2-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	SIGLEC5	HGNC	ENSG00000105501				180	0	0	231	48	17.2043
LILRA2	0	genome.wustl.edu	37	19	55098716	55098716	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4371-01A-01D-1158-08	TCGA-BR-4371-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	959629fa-0d96-4774-a99c-c5103a42d8d8	158777de-8f13-42b8-847c-a5951a7246a2	19	55098716	55098716	G	A	SNP	LILRA2	ENST00000251377	human	ensembl	74_37	+1	known	missense	c.1355	p.R452H	0.004	pirsf_A1B_glyco/leuk_Ig-like_rcpt	smart_Ig_sub,smart_Ig_sub2,pirsf_A1B_glyco/leuk_Ig-like_rcpt,pfscan_Ig-like_dom	-	no_errors	LILRA2	HGNC	ENSG00000239998				91	0	0	99	48	32.6531
NLRP4	0	genome.wustl.edu	37	19	56369488	56369488	+	Silent	SNP	C	C	T			TCGA-BR-4371-01A-01D-1158-08	TCGA-BR-4371-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	959629fa-0d96-4774-a99c-c5103a42d8d8	158777de-8f13-42b8-847c-a5951a7246a2	19	56369488	56369488	C	T	SNP	NLRP4	ENST00000301295	human	ensembl	74_37	+1	known	silent	c.729	p.P243	0.000	superfamily_P-loop_NTPase,pfscan_NACHT_NTPase	pfam_DAPIN,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP4	HGNC	ENSG00000160505				145	0	0	151	68	31.0502
AZU1	0	genome.wustl.edu	37	19	829667	829667	+	Silent	SNP	C	C	T			TCGA-BR-4371-01A-01D-1158-08	TCGA-BR-4371-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	959629fa-0d96-4774-a99c-c5103a42d8d8	158777de-8f13-42b8-847c-a5951a7246a2	19	829667	829667	C	T	SNP	AZU1	ENST00000233997	human	ensembl	74_37	+1	known	silent	c.321	p.Y107	0.095	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	AZU1	HGNC	ENSG00000172232				95	0	0	92	54	36.9863
ADAMTS10	0	genome.wustl.edu	37	19	8654436	8654436	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4371-01A-01D-1158-08	TCGA-BR-4371-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	959629fa-0d96-4774-a99c-c5103a42d8d8	158777de-8f13-42b8-847c-a5951a7246a2	19	8654436	8654436	G	A	SNP	ADAMTS10	ENST00000270328	human	ensembl	74_37	-1	known	missense	c.1934	p.A645V	1.000	NULL	pfam_Peptidase_M12B_N,pfam_Peptidase_M12B,pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS10	HGNC	ENSG00000142303				102	0	0	115	31	21.2329
MUC16	0	genome.wustl.edu	37	19	9068980	9068980	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4371-01A-01D-1158-08	TCGA-BR-4371-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	959629fa-0d96-4774-a99c-c5103a42d8d8	158777de-8f13-42b8-847c-a5951a7246a2	19	9068980	9068980	C	T	SNP	MUC16	ENST00000397910	human	ensembl	74_37	-1	known	missense	c.18466	p.A6156T	0.000	NULL	pfam_SEA_dom,smart_SEA_dom,pfscan_SEA_dom	-	no_errors	MUC16	HGNC	ENSG00000181143				80	0	0	87	45	34.0909
ZNF317	0	genome.wustl.edu	37	19	9272049	9272049	+	Silent	SNP	C	C	T			TCGA-BR-4371-01A-01D-1158-08	TCGA-BR-4371-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	959629fa-0d96-4774-a99c-c5103a42d8d8	158777de-8f13-42b8-847c-a5951a7246a2	19	9272049	9272049	C	T	SNP	ZNF317	ENST00000247956	human	ensembl	74_37	+1	known	silent	c.1728	p.H576	0.543	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF317	HGNC	ENSG00000130803				93	0	0	116	20	14.7059
AFF3	0	genome.wustl.edu	37	2	100170900	100170900	+	Silent	SNP	C	C	T			TCGA-BR-4371-01A-01D-1158-08	TCGA-BR-4371-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	959629fa-0d96-4774-a99c-c5103a42d8d8	158777de-8f13-42b8-847c-a5951a7246a2	2	100170900	100170900	C	T	SNP	AFF3	ENST00000356421	human	ensembl	74_37	-1	known	silent	c.3507	p.P1169	0.006	pfam_TF_AF4/FMR2	pfam_TF_AF4/FMR2	-	no_errors	AFF3	HGNC	ENSG00000144218				108	0	0	116	24	17.1429
FBLN7	0	genome.wustl.edu	37	2	112944852	112944852	+	Silent	SNP	C	C	T			TCGA-BR-4371-01A-01D-1158-08	TCGA-BR-4371-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	959629fa-0d96-4774-a99c-c5103a42d8d8	158777de-8f13-42b8-847c-a5951a7246a2	2	112944852	112944852	C	T	SNP	FBLN7	ENST00000331203	human	ensembl	74_37	+1	known	silent	c.1089	p.P363	0.041	NULL	pfam_EGF-like_Ca-bd_dom,pfam_Sushi_SCR_CCP,pfam_EG-like_dom,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Sushi_SCR_CCP	-	no_errors	FBLN7	HGNC	ENSG00000144152				182	0	0	186	48	20.5128
SCN2A	0	genome.wustl.edu	37	2	166245404	166245404	+	Silent	SNP	C	C	T			TCGA-BR-4371-01A-01D-1158-08	TCGA-BR-4371-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	959629fa-0d96-4774-a99c-c5103a42d8d8	158777de-8f13-42b8-847c-a5951a7246a2	2	166245404	166245404	C	T	SNP	SCN2A	ENST00000283256	human	ensembl	74_37	+1	known	silent	c.5088	p.N1696	1.000	pfam_Ion_trans_dom,pfam_PKD1_2_channel	pfam_Ion_trans_dom,pfam_Na_trans_assoc,pfam_DUF3451,pfam_PKD1_2_channel,smart_IQ_motif_EF-hand-BS,prints_Na_channel_asu,prints_PKD_2,pfscan_IQ_motif_EF-hand-BS	-	no_errors	SCN2A	HGNC	ENSG00000136531				279	0	0	306	37	10.7872
XIRP2	0	genome.wustl.edu	37	2	168102549	168102549	+	Silent	SNP	C	C	A			TCGA-BR-4371-01A-01D-1158-08	TCGA-BR-4371-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	959629fa-0d96-4774-a99c-c5103a42d8d8	158777de-8f13-42b8-847c-a5951a7246a2	2	168102549	168102549	C	A	SNP	XIRP2	ENST00000295237	human	ensembl	74_37	+1	known	silent	c.4647	p.G1549	0.998	NULL	pfam_Actin-binding_Xin_repeat	-	no_errors	XIRP2	HGNC	ENSG00000163092				100	0	0	83	37	30.8333
ABCB11	0	genome.wustl.edu	37	2	169792824	169792824	+	Silent	SNP	G	G	A			TCGA-BR-4371-01A-01D-1158-08	TCGA-BR-4371-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	959629fa-0d96-4774-a99c-c5103a42d8d8	158777de-8f13-42b8-847c-a5951a7246a2	2	169792824	169792824	G	A	SNP	ABCB11	ENST00000263817	human	ensembl	74_37	-1	known	silent	c.2730	p.F910	1.000	pfam_ABC_transptr_TM_dom,superfamily_ABC1_TM_dom,pfscan_ABC1_TM_dom	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_P-loop_NTPase,superfamily_ABC1_TM_dom,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom	-	no_errors	ABCB11	HGNC	ENSG00000073734				81	0	0	83	19	18.6275
LRP2	0	genome.wustl.edu	37	2	170030521	170030521	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4371-01A-01D-1158-08	TCGA-BR-4371-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	959629fa-0d96-4774-a99c-c5103a42d8d8	158777de-8f13-42b8-847c-a5951a7246a2	2	170030521	170030521	C	T	SNP	LRP2	ENST00000263816	human	ensembl	74_37	-1	known	missense	c.10922	p.R3641Q	0.328	pfam_LDrepeatLR_classA_rpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,pfscan_LDrepeatLR_classA_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,superfamily_TIL_dom,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP2	HGNC	ENSG00000081479				109	0	0	62	47	43.1193
TLK1	0	genome.wustl.edu	37	2	171850340	171850340	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4371-01A-01D-1158-08	TCGA-BR-4371-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	959629fa-0d96-4774-a99c-c5103a42d8d8	158777de-8f13-42b8-847c-a5951a7246a2	2	171850340	171850340	C	T	SNP	TLK1	ENST00000431350	human	ensembl	74_37	-1	known	missense	c.2251	p.G751R	1.000	superfamily_Kinase-like_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	TLK1	HGNC	ENSG00000198586				201	0	0	185	47	20.2586
TTN	0	genome.wustl.edu	37	2	179471823	179471823	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4371-01A-01D-1158-08	TCGA-BR-4371-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	959629fa-0d96-4774-a99c-c5103a42d8d8	158777de-8f13-42b8-847c-a5951a7246a2	2	179471823	179471823	G	A	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.45802	p.R15268C	1.000	pfam_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_Fibronectin_type3,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				221	0	0	201	48	19.2771
COL5A2	0	genome.wustl.edu	37	2	189899824	189899824	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4371-01A-01D-1158-08	TCGA-BR-4371-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	959629fa-0d96-4774-a99c-c5103a42d8d8	158777de-8f13-42b8-847c-a5951a7246a2	2	189899824	189899824	G	A	SNP	COL5A2	ENST00000374866	human	ensembl	74_37	-1	known	missense	c.4171	p.R1391C	1.000	pfam_Fib_collagen_C,smart_Fib_collagen_C	pfam_Collagen,pfam_Fib_collagen_C,pfam_VWF_C,superfamily_Fibrinogen_a/b/g_C_dom,smart_VWF_C,smart_Fib_collagen_C,pfscan_VWF_C	-	no_errors	COL5A2	HGNC	ENSG00000204262				105	0	0	76	32	29.6296
CRYGC	0	genome.wustl.edu	37	2	208992950	208992950	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4371-01A-01D-1158-08	TCGA-BR-4371-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	959629fa-0d96-4774-a99c-c5103a42d8d8	158777de-8f13-42b8-847c-a5951a7246a2	2	208992950	208992950	G	A	SNP	CRYGC	ENST00000282141	human	ensembl	74_37	-1	known	missense	c.502	p.R168W	0.811	pfam_Beta/gamma_crystallin,superfamily_G_crystallin-rel,smart_Beta/gamma_crystallin,pfscan_Beta/gamma_crystallin	pfam_Beta/gamma_crystallin,superfamily_G_crystallin-rel,smart_Beta/gamma_crystallin,pfscan_Beta/gamma_crystallin,prints_Beta/gamma_crystallin	-	no_errors	CRYGC	HGNC	ENSG00000163254				191	0	0	156	61	28.1106
EPHA4	0	genome.wustl.edu	37	2	222428898	222428898	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4371-01A-01D-1158-08	TCGA-BR-4371-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	959629fa-0d96-4774-a99c-c5103a42d8d8	158777de-8f13-42b8-847c-a5951a7246a2	2	222428898	222428898	A	G	SNP	EPHA4	ENST00000281821	human	ensembl	74_37	-1	known	missense	c.376	p.Y126H	1.000	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ephrin_rcpt_lig-bd_dom,superfamily_Galactose-bd-like,smart_Ephrin_rcpt_lig-bd_dom	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,pfam_SAM_2,pfam_SAM_type1,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt_N_dom,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	EPHA4	HGNC	ENSG00000116106				211	0	0	185	48	20.6009
POMC	0	genome.wustl.edu	37	2	25387531	25387531	+	Silent	SNP	G	G	A			TCGA-BR-4371-01A-01D-1158-08	TCGA-BR-4371-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	959629fa-0d96-4774-a99c-c5103a42d8d8	158777de-8f13-42b8-847c-a5951a7246a2	2	25387531	25387531	G	A	SNP	POMC	ENST00000264708	human	ensembl	74_37	-1	known	silent	c.111	p.L37	1.000	pfam_Melanocortin_N	pfam_Mcrtin_ACTH_cent,pfam_Melanocortin_N,pfam_Opioid_neuropept,prints_Mcortin_ACTH	-	no_errors	POMC	HGNC	ENSG00000115138				107	0	0	140	9	6.04027
KCNG3	0	genome.wustl.edu	37	2	42720508	42720508	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4371-01A-01D-1158-08	TCGA-BR-4371-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	959629fa-0d96-4774-a99c-c5103a42d8d8	158777de-8f13-42b8-847c-a5951a7246a2	2	42720508	42720508	C	T	SNP	KCNG3	ENST00000306078	human	ensembl	74_37	-1	known	missense	c.134	p.R45H	0.999	pfam_T1-type_BTB,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv6	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv6,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv3	-	no_errors	KCNG3	HGNC	ENSG00000171126				10	0	0	12	7	36.8421
NRXN1	0	genome.wustl.edu	37	2	50850746	50850746	+	Silent	SNP	T	T	C			TCGA-BR-4371-01A-01D-1158-08	TCGA-BR-4371-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	959629fa-0d96-4774-a99c-c5103a42d8d8	158777de-8f13-42b8-847c-a5951a7246a2	2	50850746	50850746	T	C	SNP	NRXN1	ENST00000402717	human	ensembl	74_37	-1	known	silent	c.840	p.E280	1.000	superfamily_ConA-like_lec_gl_sf	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,smart_EG-like_dom,smart_Neurexin-like,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	NRXN1	HGNC	ENSG00000179915				56	0	0	34	15	30.6122
EMX1	0	genome.wustl.edu	37	2	73151516	73151516	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4371-01A-01D-1158-08	TCGA-BR-4371-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	959629fa-0d96-4774-a99c-c5103a42d8d8	158777de-8f13-42b8-847c-a5951a7246a2	2	73151516	73151516	C	T	SNP	EMX1	ENST00000258106	human	ensembl	74_37	+1	known	missense	c.599	p.S200L	1.000	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa	-	no_errors	EMX1	HGNC	ENSG00000135638				12	0	0	12	4	25
CCDC142	0	genome.wustl.edu	37	2	74701728	74701728	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4371-01A-01D-1158-08	TCGA-BR-4371-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	959629fa-0d96-4774-a99c-c5103a42d8d8	158777de-8f13-42b8-847c-a5951a7246a2	2	74701728	74701728	C	T	SNP	CCDC142	ENST00000393965	human	ensembl	74_37	-1	known	missense	c.2198	p.R733Q	0.000	NULL	NULL	-	no_errors	CCDC142	HGNC	ENSG00000135637				27	0	0	33	30	47.619
RNF103	0	genome.wustl.edu	37	2	86849918	86849918	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4371-01A-01D-1158-08	TCGA-BR-4371-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	959629fa-0d96-4774-a99c-c5103a42d8d8	158777de-8f13-42b8-847c-a5951a7246a2	2	86849918	86849918	C	T	SNP	RNF103	ENST00000237455	human	ensembl	74_37	-1	known	missense	c.92	p.G31D	1.000	NULL	pfam_Znf_C3HC4_RING-type,superfamily_Thioredoxin-like_fold,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF103	HGNC	ENSG00000239305				86	0	0	90	13	12.6214
MGME1	0	genome.wustl.edu	37	20	17956474	17956474	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4371-01A-01D-1158-08	TCGA-BR-4371-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	959629fa-0d96-4774-a99c-c5103a42d8d8	158777de-8f13-42b8-847c-a5951a7246a2	20	17956474	17956474	G	A	SNP	MGME1	ENST00000377710	human	ensembl	74_37	+1	known	missense	c.659	p.R220Q	0.970	NULL	superfamily_Restrct_endonuc-II-like	-	no_errors	MGME1	HGNC	ENSG00000125871				109	0	0	191	37	16.2281
SAMHD1	0	genome.wustl.edu	37	20	35555600	35555600	+	Silent	SNP	C	C	T			TCGA-BR-4371-01A-01D-1158-08	TCGA-BR-4371-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	959629fa-0d96-4774-a99c-c5103a42d8d8	158777de-8f13-42b8-847c-a5951a7246a2	20	35555600	35555600	C	T	SNP	SAMHD1	ENST00000262878	human	ensembl	74_37	-1	known	silent	c.681	p.P227	0.735	pfam_HD_domain,smart_HD/PDEase_dom	pfam_HD_domain,pfam_SAM_2,pfam_SAM_type1,superfamily_SAM/pointed,smart_SAM,smart_HD/PDEase_dom,pfscan_SAM	-	no_errors	SAMHD1	HGNC	ENSG00000101347				141	1	0.704225	231	24	9.41176
KCNB1	0	genome.wustl.edu	37	20	47991216	47991216	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4371-01A-01D-1158-08	TCGA-BR-4371-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	959629fa-0d96-4774-a99c-c5103a42d8d8	158777de-8f13-42b8-847c-a5951a7246a2	20	47991216	47991216	C	T	SNP	KCNB1	ENST00000371741	human	ensembl	74_37	-1	known	missense	c.881	p.R294H	1.000	pfam_Ion_trans_dom	pfam_K_chnl_volt-dep_Kv2,pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv2.1,prints_K_chnl_volt-dep_Kv2,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv6,prints_K_chnl_volt-dep_Kv3,prints_K_chnl_volt-dep_Kv8	-	no_errors	KCNB1	HGNC	ENSG00000158445				117	1	0.847458	165	48	22.5352
SYCP2	0	genome.wustl.edu	37	20	58467645	58467645	+	Silent	SNP	C	C	T			TCGA-BR-4371-01A-01D-1158-08	TCGA-BR-4371-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	959629fa-0d96-4774-a99c-c5103a42d8d8	158777de-8f13-42b8-847c-a5951a7246a2	20	58467645	58467645	C	T	SNP	SYCP2	ENST00000357552	human	ensembl	74_37	-1	known	silent	c.1905	p.S635	0.019	NULL	NULL	-	no_errors	SYCP2	HGNC	ENSG00000196074				86	0	0	130	12	8.4507
LAMA5	0	genome.wustl.edu	37	20	60887486	60887486	+	Silent	SNP	G	G	A			TCGA-BR-4371-01A-01D-1158-08	TCGA-BR-4371-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	959629fa-0d96-4774-a99c-c5103a42d8d8	158777de-8f13-42b8-847c-a5951a7246a2	20	60887486	60887486	G	A	SNP	LAMA5	ENST00000252999	human	ensembl	74_37	-1	known	silent	c.9330	p.G3110	0.313	superfamily_ConA-like_lec_gl_sf,pfscan_Laminin_G	pfam_EGF_laminin,pfam_Laminin_I,pfam_Laminin_G,pfam_Laminin_N,pfam_Laminin_II,pfam_Laminin_B_type_IV,superfamily_ConA-like_lec_gl_sf,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N,pfscan_TNFR/NGFR_Cys_rich_reg	-	no_errors	LAMA5	HGNC	ENSG00000130702				23	0	0	26	4	13.3333
BIRC7	0	genome.wustl.edu	37	20	61870941	61870941	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4371-01A-01D-1158-08	TCGA-BR-4371-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	959629fa-0d96-4774-a99c-c5103a42d8d8	158777de-8f13-42b8-847c-a5951a7246a2	20	61870941	61870941	G	A	SNP	BIRC7	ENST00000217169	human	ensembl	74_37	+1	known	missense	c.881	p.R294H	1.000	NULL	pfam_BIR,smart_BIR,smart_Znf_RING,pfscan_BIR,pfscan_Znf_RING	-	no_errors	BIRC7	HGNC	ENSG00000101197				25	0	0	44	9	16.9811
PTK6	0	genome.wustl.edu	37	20	62164956	62164956	+	Silent	SNP	G	G	A			TCGA-BR-4371-01A-01D-1158-08	TCGA-BR-4371-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	959629fa-0d96-4774-a99c-c5103a42d8d8	158777de-8f13-42b8-847c-a5951a7246a2	20	62164956	62164956	G	A	SNP	PTK6	ENST00000217185	human	ensembl	74_37	-1	known	silent	c.618	p.F206	0.917	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_SH2,pfam_SH3_2,pfam_SH3_domain,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_SH3_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_SH2,pfscan_SH3_domain,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2,prints_SH3_domain	-	no_errors	PTK6	HGNC	ENSG00000101213				139	0	0	245	80	24.6154
HELZ2	0	genome.wustl.edu	37	20	62193017	62193017	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4371-01A-01D-1158-08	TCGA-BR-4371-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	959629fa-0d96-4774-a99c-c5103a42d8d8	158777de-8f13-42b8-847c-a5951a7246a2	20	62193017	62193017	C	T	SNP	HELZ2	ENST00000467148	human	ensembl	74_37	-1	known	missense	c.6773	p.R2258H	0.062	superfamily_P-loop_NTPase	superfamily_P-loop_NTPase	-	no_errors	HELZ2	HGNC	ENSG00000130589				173	0	0	224	21	8.57143
MRPL39	0	genome.wustl.edu	37	21	26972169	26972169	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4371-01A-01D-1158-08	TCGA-BR-4371-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	959629fa-0d96-4774-a99c-c5103a42d8d8	158777de-8f13-42b8-847c-a5951a7246a2	21	26972169	26972169	C	T	SNP	MRPL39	ENST00000307301	human	ensembl	74_37	-1	known	missense	c.530	p.G177D	1.000	superfamily_Thr/Ala-tRNA-synth_IIc_edit	superfamily_Thr/Ala-tRNA-synth_IIc_edit,superfamily_TGS-like	-	no_errors	MRPL39	HGNC	ENSG00000154719				75	0	0	81	19	19
KRTAP11-1	0	genome.wustl.edu	37	21	32253626	32253626	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4371-01A-01D-1158-08	TCGA-BR-4371-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	959629fa-0d96-4774-a99c-c5103a42d8d8	158777de-8f13-42b8-847c-a5951a7246a2	21	32253626	32253626	C	T	SNP	KRTAP11-1	ENST00000332378	human	ensembl	74_37	-1	known	missense	c.218	p.R73Q	0.001	pfam_KRTAP_PMG	pfam_KRTAP_PMG	-	no_errors	KRTAP11-1	HGNC	ENSG00000182591				91	0	0	50	41	45.0549
BRWD1	0	genome.wustl.edu	37	21	40559053	40559053	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4371-01A-01D-1158-08	TCGA-BR-4371-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	959629fa-0d96-4774-a99c-c5103a42d8d8	158777de-8f13-42b8-847c-a5951a7246a2	21	40559053	40559053	C	T	SNP	BRWD1	ENST00000333229	human	ensembl	74_37	-1	known	missense	c.6862	p.D2288N	0.999	NULL	pfam_WD40_repeat,pfam_Bromodomain,superfamily_WD40_repeat_dom,superfamily_Bromodomain,smart_WD40_repeat,smart_Bromodomain,pfscan_Bromodomain,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Bromodomain	-	no_errors	BRWD1	HGNC	ENSG00000185658				138	0	0	75	57	43.1818
SEZ6L	0	genome.wustl.edu	37	22	26706696	26706696	+	Silent	SNP	C	C	T			TCGA-BR-4371-01A-01D-1158-08	TCGA-BR-4371-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	959629fa-0d96-4774-a99c-c5103a42d8d8	158777de-8f13-42b8-847c-a5951a7246a2	22	26706696	26706696	C	T	SNP	SEZ6L	ENST00000248933	human	ensembl	74_37	+1	known	silent	c.1575	p.T525	0.033	pfam_CUB_dom,superfamily_CUB_dom,smart_CUB_dom,pfscan_CUB_dom	pfam_CUB_dom,pfam_Sushi_SCR_CCP,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_CUB_dom,smart_Sushi_SCR_CCP,pfscan_CUB_dom,pfscan_Sushi_SCR_CCP	-	no_errors	SEZ6L	HGNC	ENSG00000100095				163	0	0	126	79	38.5366
SLC5A1	0	genome.wustl.edu	37	22	32479091	32479091	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4371-01A-01D-1158-08	TCGA-BR-4371-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	959629fa-0d96-4774-a99c-c5103a42d8d8	158777de-8f13-42b8-847c-a5951a7246a2	22	32479091	32479091	C	T	SNP	SLC5A1	ENST00000266088	human	ensembl	74_37	+1	known	missense	c.614	p.T205I	1.000	pfam_Na/solute_symporter,pfscan_Na/solute_symporter,tigrfam_Na/solute_symporter_subgr	pfam_Na/solute_symporter,pfscan_Na/solute_symporter,tigrfam_Na/solute_symporter_subgr	-	no_errors	SLC5A1	HGNC	ENSG00000100170				66	0	0	58	15	20.5479
BPIFC	0	genome.wustl.edu	37	22	32831745	32831745	+	Silent	SNP	C	C	T			TCGA-BR-4371-01A-01D-1158-08	TCGA-BR-4371-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	959629fa-0d96-4774-a99c-c5103a42d8d8	158777de-8f13-42b8-847c-a5951a7246a2	22	32831745	32831745	C	T	SNP	BPIFC	ENST00000300399	human	ensembl	74_37	-1	known	silent	c.870	p.A290	0.015	pfam_Lipid-bd_serum_glycop_C,superfamily_Bactericidal_perm-incr_a/b_dom,smart_Lipid-bd_serum_glycop_C	pfam_Lipid-bd_serum_glycop_N,pfam_Lipid-bd_serum_glycop_C,superfamily_Bactericidal_perm-incr_a/b_dom,smart_Lipid-bd_serum_glycop_N,smart_Lipid-bd_serum_glycop_C	-	no_errors	BPIFC	HGNC	ENSG00000184459				80	0	0	59	19	24.359
SEC61A1	0	genome.wustl.edu	37	3	127779501	127779501	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4371-01A-01D-1158-08	TCGA-BR-4371-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	959629fa-0d96-4774-a99c-c5103a42d8d8	158777de-8f13-42b8-847c-a5951a7246a2	3	127779501	127779501	C	T	SNP	SEC61A1	ENST00000243253	human	ensembl	74_37	+1	known	nonsense	c.613	p.R205*	1.000	pfam_SecY/SEC61-alpha,superfamily_SecY_su_dom,pirsf_SecY/SEC61-alpha,tigrfam_SecY/SEC61-alpha	pfam_SecY/SEC61-alpha,pfam_Translocon_Sec61/SecY_plug_dom,superfamily_SecY_su_dom,pirsf_SecY/SEC61-alpha,tigrfam_SecY/SEC61-alpha	-	no_errors	SEC61A1	HGNC	ENSG00000058262				48	0	0	58	24	29.2683
ZIC1	0	genome.wustl.edu	37	3	147128283	147128283	+	Silent	SNP	C	C	T			TCGA-BR-4371-01A-01D-1158-08	TCGA-BR-4371-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	959629fa-0d96-4774-a99c-c5103a42d8d8	158777de-8f13-42b8-847c-a5951a7246a2	3	147128283	147128283	C	T	SNP	ZIC1	ENST00000282928	human	ensembl	74_37	+1	known	silent	c.384	p.F128	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZIC1	HGNC	ENSG00000152977				30	0	0	34	7	17.0732
PIK3CA	0	genome.wustl.edu	37	3	178936091	178936091	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4371-01A-01D-1158-08	TCGA-BR-4371-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	959629fa-0d96-4774-a99c-c5103a42d8d8	158777de-8f13-42b8-847c-a5951a7246a2	3	178936091	178936091	G	A	SNP	PIK3CA	ENST00000263967	human	ensembl	74_37	+1	known	missense	c.1633	p.E545K	1.000	pfam_PInositide-3_kin_accessory_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_dom,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879				63	0	0	61	20	24.6914
PIK3CA	0	genome.wustl.edu	37	3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4371-01A-01D-1158-08	TCGA-BR-4371-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	959629fa-0d96-4774-a99c-c5103a42d8d8	158777de-8f13-42b8-847c-a5951a7246a2	3	178952085	178952085	A	G	SNP	PIK3CA	ENST00000263967	human	ensembl	74_37	+1	known	missense	c.3140	p.H1047R	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_dom,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879				86	0	0	102	20	16.3934
NME6	0	genome.wustl.edu	37	3	48339990	48339990	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4371-01A-01D-1158-08	TCGA-BR-4371-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	959629fa-0d96-4774-a99c-c5103a42d8d8	158777de-8f13-42b8-847c-a5951a7246a2	3	48339990	48339990	C	T	SNP	NME6	ENST00000421967	human	ensembl	74_37	-1	known	missense	c.41	p.R14Q	0.654	NULL	pfam_Nucleoside_diP_kinase,superfamily_Nucleoside_diP_kinase,smart_Nucleoside_diP_kinase,prints_Nucleoside_diP_kinase	-	no_errors	NME6	HGNC	ENSG00000172113				30	0	0	34	3	8.10811
COL7A1	0	genome.wustl.edu	37	3	48618351	48618351	+	Silent	SNP	C	C	T			TCGA-BR-4371-01A-01D-1158-08	TCGA-BR-4371-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	959629fa-0d96-4774-a99c-c5103a42d8d8	158777de-8f13-42b8-847c-a5951a7246a2	3	48618351	48618351	C	T	SNP	COL7A1	ENST00000328333	human	ensembl	74_37	-1	known	silent	c.4944	p.P1648	0.993	NULL	pfam_Collagen,pfam_Fibronectin_type3,pfam_VWF_A,pfam_Prot_inh_Kunz-m,superfamily_Fibronectin_type3,superfamily_Prot_inh_Kunz-m,smart_VWF_A,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_VWF_A,pfscan_Prot_inh_Kunz-m,prints_Prot_inh_Kunz-m	-	no_errors	COL7A1	HGNC	ENSG00000114270				56	0	0	44	20	31.25
PRICKLE2	0	genome.wustl.edu	37	3	64132808	64132808	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4371-01A-01D-1158-08	TCGA-BR-4371-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	959629fa-0d96-4774-a99c-c5103a42d8d8	158777de-8f13-42b8-847c-a5951a7246a2	3	64132808	64132808	G	A	SNP	PRICKLE2	ENST00000295902	human	ensembl	74_37	-1	known	missense	c.1358	p.S453L	1.000	NULL	pfam_PET_domain,pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	PRICKLE2	HGNC	ENSG00000163637				197	1	0.505051	185	35	15.9091
FAM86DP	0	genome.wustl.edu	37	3	75471367	75471367	+	RNA	SNP	C	C	G			TCGA-BR-4371-01A-01D-1158-08	TCGA-BR-4371-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	959629fa-0d96-4774-a99c-c5103a42d8d8	158777de-8f13-42b8-847c-a5951a7246a2	3	75471367	75471367	C	G	SNP	FAM86DP	ENST00000459803	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.004	-	-	-	no_errors	FAM86DP	HGNC	ENSG00000244026				31	0	0	28	3	9.67742
MTHFD2P1	0	genome.wustl.edu	37	3	95373850	95373850	+	RNA	SNP	T	T	G			TCGA-BR-4371-01A-01D-1158-08	TCGA-BR-4371-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	959629fa-0d96-4774-a99c-c5103a42d8d8	158777de-8f13-42b8-847c-a5951a7246a2	3	95373850	95373850	T	G	SNP	MTHFD2P1	ENST00000494840	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.955	-	-	-	no_errors	MTHFD2P1	HGNC	ENSG00000244681				13	0	0	8	10	55.5556
OR5H14	0	genome.wustl.edu	37	3	97868558	97868558	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4371-01A-01D-1158-08	TCGA-BR-4371-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	959629fa-0d96-4774-a99c-c5103a42d8d8	158777de-8f13-42b8-847c-a5951a7246a2	3	97868558	97868558	C	A	SNP	OR5H14	ENST00000437310	human	ensembl	74_37	+1	known	missense	c.329	p.T110K	0.179	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR5H14	HGNC	ENSG00000236032				253	2	0.784314	168	90	34.8837
PITX2	0	genome.wustl.edu	37	4	111539829	111539829	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4371-01A-01D-1158-08	TCGA-BR-4371-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	959629fa-0d96-4774-a99c-c5103a42d8d8	158777de-8f13-42b8-847c-a5951a7246a2	4	111539829	111539829	G	A	SNP	PITX2	ENST00000306732	human	ensembl	74_37	-1	known	missense	c.427	p.R143C	1.000	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pirsf_Homeobox_Pitx/unc30,pfscan_Homeobox_dom	pfam_Homeobox_dom,pfam_OAR_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pirsf_Homeobox_Pitx/unc30,pfscan_OAR_dom,pfscan_Homeobox_dom	-	no_errors	PITX2	HGNC	ENSG00000164093				138	1	0.719424	159	36	18.4615
PCDH18	0	genome.wustl.edu	37	4	138442509	138442509	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-4371-01A-01D-1158-08	TCGA-BR-4371-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	959629fa-0d96-4774-a99c-c5103a42d8d8	158777de-8f13-42b8-847c-a5951a7246a2	4	138442509	138442509	C	A	SNP	PCDH18	ENST00000344876	human	ensembl	74_37	-1	known	nonsense	c.3082	p.E1028*	0.998	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH18	HGNC	ENSG00000189184				95	0	0	53	36	40.4494
RNF150	0	genome.wustl.edu	37	4	141888924	141888924	+	Silent	SNP	T	T	C			TCGA-BR-4371-01A-01D-1158-08	TCGA-BR-4371-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	959629fa-0d96-4774-a99c-c5103a42d8d8	158777de-8f13-42b8-847c-a5951a7246a2	4	141888924	141888924	T	C	SNP	RNF150	ENST00000515673	human	ensembl	74_37	-1	known	silent	c.588	p.G196	0.009	NULL	pfam_Protease-assoc_domain,pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF150	HGNC	ENSG00000170153				201	0	0	233	66	22.0736
FBXW7	0	genome.wustl.edu	37	4	153247167	153247167	+	Nonsense_Mutation	SNP	A	A	C			TCGA-BR-4371-01A-01D-1158-08	TCGA-BR-4371-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	959629fa-0d96-4774-a99c-c5103a42d8d8	158777de-8f13-42b8-847c-a5951a7246a2	4	153247167	153247167	A	C	SNP	FBXW7	ENST00000281708	human	ensembl	74_37	-1	known	nonsense	c.1635	p.Y545*	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,pfam_F-box_dom,superfamily_WD40_repeat_dom,superfamily_F-box_dom,smart_F-box_dom,smart_WD40_repeat,pfscan_F-box_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	FBXW7	HGNC	ENSG00000109670				167	0	0	128	88	40.7407
NPY2R	0	genome.wustl.edu	37	4	156135406	156135406	+	Silent	SNP	G	G	A			TCGA-BR-4371-01A-01D-1158-08	TCGA-BR-4371-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	959629fa-0d96-4774-a99c-c5103a42d8d8	158777de-8f13-42b8-847c-a5951a7246a2	4	156135406	156135406	G	A	SNP	NPY2R	ENST00000329476	human	ensembl	74_37	+1	known	silent	c.315	p.P105	0.846	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_NPFF_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_NPY2_rcpt,prints_GPCR_Rhodpsn,prints_NPY_rcpt,prints_NPFF_rcpt	-	no_errors	NPY2R	HGNC	ENSG00000185149				85	0	0	43	35	44.8718
POLR2B	0	genome.wustl.edu	37	4	57877199	57877199	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-4371-01A-01D-1158-08	TCGA-BR-4371-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	959629fa-0d96-4774-a99c-c5103a42d8d8	158777de-8f13-42b8-847c-a5951a7246a2	4	57877199	57877199	A	T	SNP	POLR2B	ENST00000314595	human	ensembl	74_37	+1	known	missense	c.1733	p.K578I	1.000	pfam_RNA_pol_Rpb2_4	pfam_DNA-dir_RNA_pol_su2_6,pfam_RNA_pol_bsu_protrusion,pfam_RNA_pol_Rpb2_2,pfam_RNA_pol_Rpb2_7,pfam_RNA_pol_Rpb2_4,pfam_RNA_pol_Rpb2_3,pfam_RNA_pol_Rpb2_5	-	no_errors	POLR2B	HGNC	ENSG00000047315				65	0	0	72	16	18.1818
DRD5	0	genome.wustl.edu	37	4	9783809	9783809	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-4371-01A-01D-1158-08	TCGA-BR-4371-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	959629fa-0d96-4774-a99c-c5103a42d8d8	158777de-8f13-42b8-847c-a5951a7246a2	4	9783809	9783809	C	G	SNP	DRD5	ENST00000304374	human	ensembl	74_37	+1	known	missense	c.156	p.I52M	1.000	prints_GPCR_Rhodpsn,prints_Dopamine_D5_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_Dopamine_D5_rcpt,prints_Dopamine_rcpt	-	no_errors	DRD5	HGNC	ENSG00000169676				31	0	0	29	10	25.641
PCDHA1	0	genome.wustl.edu	37	5	140168105	140168105	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4371-01A-01D-1158-08	TCGA-BR-4371-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	959629fa-0d96-4774-a99c-c5103a42d8d8	158777de-8f13-42b8-847c-a5951a7246a2	5	140168105	140168105	G	A	SNP	PCDHA1	ENST00000504120	human	ensembl	74_37	+1	known	missense	c.2230	p.A744T	0.004	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA1	HGNC	ENSG00000204970				58	0	0	45	13	22.4138
PCDHGA5	0	genome.wustl.edu	37	5	140744135	140744135	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4371-01A-01D-1158-08	TCGA-BR-4371-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	959629fa-0d96-4774-a99c-c5103a42d8d8	158777de-8f13-42b8-847c-a5951a7246a2	5	140744135	140744135	C	T	SNP	PCDHGA5	ENST00000518069	human	ensembl	74_37	+1	known	nonsense	c.238	p.R80*	0.001	pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA5	HGNC	ENSG00000253485				148	0	0	165	29	14.9485
PCDHGA6	0	genome.wustl.edu	37	5	140754857	140754857	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-4371-01A-01D-1158-08	TCGA-BR-4371-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	959629fa-0d96-4774-a99c-c5103a42d8d8	158777de-8f13-42b8-847c-a5951a7246a2	5	140754857	140754857	C	T	SNP	PCDHGA6	ENST00000517434	human	ensembl	74_37	+1	known	nonsense	c.1207	p.R403*	0.056	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA6	HGNC	ENSG00000253731				92	0	0	93	18	16.2162
NDST1	0	genome.wustl.edu	37	5	149932953	149932953	+	RNA	SNP	T	T	A			TCGA-BR-4371-01A-01D-1158-08	TCGA-BR-4371-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	959629fa-0d96-4774-a99c-c5103a42d8d8	158777de-8f13-42b8-847c-a5951a7246a2	5	149932953	149932953	T	A	SNP	NDST1	ENST00000521752	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.995	-	-	-	no_errors	NDST1	HGNC	ENSG00000070614				243	0	0	163	140	46.2046
FAM71B	0	genome.wustl.edu	37	5	156590250	156590250	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4371-01A-01D-1158-08	TCGA-BR-4371-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	959629fa-0d96-4774-a99c-c5103a42d8d8	158777de-8f13-42b8-847c-a5951a7246a2	5	156590250	156590250	G	T	SNP	FAM71B	ENST00000302938	human	ensembl	74_37	-1	known	missense	c.1026	p.S342R	0.000	NULL	pfam_DUF3699	-	no_errors	FAM71B	HGNC	ENSG00000170613				165	0	0	114	22	16.1765
DOCK2	0	genome.wustl.edu	37	5	169469088	169469088	+	Silent	SNP	G	G	A			TCGA-BR-4371-01A-01D-1158-08	TCGA-BR-4371-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	959629fa-0d96-4774-a99c-c5103a42d8d8	158777de-8f13-42b8-847c-a5951a7246a2	5	169469088	169469088	G	A	SNP	DOCK2	ENST00000256935	human	ensembl	74_37	+1	known	silent	c.3828	p.L1276	1.000	NULL	pfam_DOCK_C,pfam_SH3_2,superfamily_SH3_domain,superfamily_Cyt_c-like_dom,superfamily_ARM-type_fold,superfamily_Ferritin-like_SF,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	DOCK2	HGNC	ENSG00000134516				39	0	0	32	11	25.5814
DOCK2	0	genome.wustl.edu	37	5	169494638	169494638	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-4371-01A-01D-1158-08	TCGA-BR-4371-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	959629fa-0d96-4774-a99c-c5103a42d8d8	158777de-8f13-42b8-847c-a5951a7246a2	5	169494638	169494638	T	C	SNP	DOCK2	ENST00000256935	human	ensembl	74_37	+1	known	missense	c.4592	p.L1531P	1.000	pfam_DOCK_C	pfam_DOCK_C,pfam_SH3_2,superfamily_SH3_domain,superfamily_Cyt_c-like_dom,superfamily_ARM-type_fold,superfamily_Ferritin-like_SF,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	DOCK2	HGNC	ENSG00000134516				145	0	0	141	36	20.339
DOCK2	0	genome.wustl.edu	37	5	169504824	169504824	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4371-01A-01D-1158-08	TCGA-BR-4371-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	959629fa-0d96-4774-a99c-c5103a42d8d8	158777de-8f13-42b8-847c-a5951a7246a2	5	169504824	169504824	C	A	SNP	DOCK2	ENST00000256935	human	ensembl	74_37	+1	known	missense	c.4977	p.S1659R	1.000	NULL	pfam_DOCK_C,pfam_SH3_2,superfamily_SH3_domain,superfamily_Cyt_c-like_dom,superfamily_ARM-type_fold,superfamily_Ferritin-like_SF,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	DOCK2	HGNC	ENSG00000134516				67	0	0	53	26	32.9114
CPEB4	0	genome.wustl.edu	37	5	173378844	173378844	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4371-01A-01D-1158-08	TCGA-BR-4371-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	959629fa-0d96-4774-a99c-c5103a42d8d8	158777de-8f13-42b8-847c-a5951a7246a2	5	173378844	173378844	G	T	SNP	CPEB4	ENST00000265085	human	ensembl	74_37	+1	known	missense	c.1683	p.W561C	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	CPEB4	HGNC	ENSG00000113742				76	0	0	43	33	43.4211
ZFP2	0	genome.wustl.edu	37	5	178359618	178359618	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4371-01A-01D-1158-08	TCGA-BR-4371-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	959629fa-0d96-4774-a99c-c5103a42d8d8	158777de-8f13-42b8-847c-a5951a7246a2	5	178359618	178359618	A	G	SNP	ZFP2	ENST00000361362	human	ensembl	74_37	+1	known	missense	c.1304	p.E435G	1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZFP2	HGNC	ENSG00000198939				99	0	0	58	43	42.5743
TBC1D9B	0	genome.wustl.edu	37	5	179315209	179315209	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4371-01A-01D-1158-08	TCGA-BR-4371-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	959629fa-0d96-4774-a99c-c5103a42d8d8	158777de-8f13-42b8-847c-a5951a7246a2	5	179315209	179315209	C	T	SNP	TBC1D9B	ENST00000356834	human	ensembl	74_37	-1	known	missense	c.1148	p.R383H	1.000	NULL	pfam_Rab-GTPase-TBC_dom,pfam_GRAM,superfamily_Rab-GTPase-TBC_dom,smart_GRAM,smart_Rab-GTPase-TBC_dom,pfscan_EF_hand_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D9B	HGNC	ENSG00000197226				231	0	0	151	116	43.4457
ADAMTS12	0	genome.wustl.edu	37	5	33577248	33577248	+	Silent	SNP	A	A	G			TCGA-BR-4371-01A-01D-1158-08	TCGA-BR-4371-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	959629fa-0d96-4774-a99c-c5103a42d8d8	158777de-8f13-42b8-847c-a5951a7246a2	5	33577248	33577248	A	G	SNP	ADAMTS12	ENST00000504830	human	ensembl	74_37	-1	known	silent	c.2883	p.G961	1.000	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS12	HGNC	ENSG00000151388				157	0	0	152	8	5
SLC1A3	0	genome.wustl.edu	37	5	36684095	36684095	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-4371-01A-01D-1158-08	TCGA-BR-4371-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	959629fa-0d96-4774-a99c-c5103a42d8d8	158777de-8f13-42b8-847c-a5951a7246a2	5	36684095	36684095	G	T	SNP	SLC1A3	ENST00000265113	human	ensembl	74_37	+1	known	missense	c.1419	p.W473C	1.000	pfam_Na-dicarboxylate_symporter	pfam_Na-dicarboxylate_symporter,prints_Na-dicarboxylate_symporter	-	no_errors	SLC1A3	HGNC	ENSG00000079215				158	0	0	110	61	35.6725
HCN1	0	genome.wustl.edu	37	5	45262221	45262221	+	Silent	SNP	C	C	T			TCGA-BR-4371-01A-01D-1158-08	TCGA-BR-4371-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	959629fa-0d96-4774-a99c-c5103a42d8d8	158777de-8f13-42b8-847c-a5951a7246a2	5	45262221	45262221	C	T	SNP	HCN1	ENST00000303230	human	ensembl	74_37	-1	known	silent	c.2475	p.T825	0.006	NULL	pfam_Ion_trans_N,pfam_cNMP-bd_dom,pfam_Ion_trans_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG/ELK/ERG	-	no_errors	HCN1	HGNC	ENSG00000164588				70	0	0	51	21	29.1667
MAP1B	0	genome.wustl.edu	37	5	71493006	71493006	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4371-01A-01D-1158-08	TCGA-BR-4371-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	959629fa-0d96-4774-a99c-c5103a42d8d8	158777de-8f13-42b8-847c-a5951a7246a2	5	71493006	71493006	G	A	SNP	MAP1B	ENST00000296755	human	ensembl	74_37	+1	known	missense	c.3824	p.R1275H	0.999	NULL	pfam_MAP1B_neuraxin	-	no_errors	MAP1B	HGNC	ENSG00000131711				89	0	0	60	41	40.5941
ZNF366	0	genome.wustl.edu	37	5	71756781	71756781	+	Silent	SNP	G	G	A			TCGA-BR-4371-01A-01D-1158-08	TCGA-BR-4371-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	959629fa-0d96-4774-a99c-c5103a42d8d8	158777de-8f13-42b8-847c-a5951a7246a2	5	71756781	71756781	G	A	SNP	ZNF366	ENST00000318442	human	ensembl	74_37	-1	known	silent	c.543	p.H181	0.995	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF366	HGNC	ENSG00000178175				214	0	0	206	39	15.9184
PARK2	0	genome.wustl.edu	37	6	162394349	162394349	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4371-01A-01D-1158-08	TCGA-BR-4371-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	959629fa-0d96-4774-a99c-c5103a42d8d8	158777de-8f13-42b8-847c-a5951a7246a2	6	162394349	162394349	G	A	SNP	PARK2	ENST00000366898	human	ensembl	74_37	-1	known	missense	c.719	p.T240M	0.715	pirsf_Parkin,prints_Parkin	pfam_Ubiquitin_dom,pfam_Znf_C6HC,pfam_Rad60/SUMO_like,smart_Ubiquitin_dom,smart_Znf_C6HC,pirsf_Parkin,pfscan_Ubiquitin_supergroup,prints_Parkin,prints_Ubiquitin	-	no_errors	PARK2	HGNC	ENSG00000185345				91	0	0	83	7	7.77778
SMOC2	0	genome.wustl.edu	37	6	168927051	168927051	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-4371-01A-01D-1158-08	TCGA-BR-4371-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	959629fa-0d96-4774-a99c-c5103a42d8d8	158777de-8f13-42b8-847c-a5951a7246a2	6	168927051	168927051	G	C	SNP	SMOC2	ENST00000354536	human	ensembl	74_37	+1	known	missense	c.282	p.R94S	1.000	pfam_Thyroglobulin_1,superfamily_Thyroglobulin_1,pfscan_Thyroglobulin_1	pfam_Thyroglobulin_1,pfam_SPARC/Testican_Ca-bd-dom,pfam_Kazal_dom,superfamily_Thyroglobulin_1,smart_Kazal_dom,smart_Thyroglobulin_1,pfscan_EF_hand_dom,pfscan_Thyroglobulin_1	-	no_errors	SMOC2	HGNC	ENSG00000112562				72	0	0	107	16	13.0081
LRCH4	0	genome.wustl.edu	37	7	100172852	100172852	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4371-01A-01D-1158-08	TCGA-BR-4371-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	959629fa-0d96-4774-a99c-c5103a42d8d8	158777de-8f13-42b8-847c-a5951a7246a2	7	100172852	100172852	G	A	SNP	LRCH4	ENST00000310300	human	ensembl	74_37	-1	known	missense	c.1930	p.R644W	0.746	smart_CH-domain	pfam_Leu-rich_rpt,pfam_CH-domain,superfamily_CH-domain,smart_Leu-rich_rpt_typical-subtyp,smart_CH-domain,pfscan_CH-domain	-	no_errors	LRCH4	HGNC	ENSG00000077454				16	0	0	8	7	46.6667
RELN	0	genome.wustl.edu	37	7	103234860	103234860	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4371-01A-01D-1158-08	TCGA-BR-4371-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	959629fa-0d96-4774-a99c-c5103a42d8d8	158777de-8f13-42b8-847c-a5951a7246a2	7	103234860	103234860	C	T	SNP	RELN	ENST00000424685	human	ensembl	74_37	-1	known	missense	c.3619	p.E1207K	1.000	superfamily_Growth_fac_rcpt_N_dom	pfam_EGF_extracell,pfam_Reeler_dom,pfam_BNR_rpt,superfamily_Sialidases,superfamily_Growth_fac_rcpt_N_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Reeler_dom	-	no_errors	RELN	HGNC	ENSG00000189056				350	0	0	223	257	53.5417
PIK3CG	0	genome.wustl.edu	37	7	106545598	106545598	+	Silent	SNP	C	C	T			TCGA-BR-4371-01A-01D-1158-08	TCGA-BR-4371-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	959629fa-0d96-4774-a99c-c5103a42d8d8	158777de-8f13-42b8-847c-a5951a7246a2	7	106545598	106545598	C	T	SNP	PIK3CG	ENST00000359195	human	ensembl	74_37	+1	known	silent	c.3075	p.N1025	1.000	pfam_PI3/4_kinase_cat_dom,superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_C2_dom,pfam_PI3K_Ras-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CG	HGNC	ENSG00000105851				230	0	0	308	37	10.7246
MIR490	0	genome.wustl.edu	37	7	136587920	136587920	+	RNA	SNP	C	C	A			TCGA-BR-4371-01A-01D-1158-08	TCGA-BR-4371-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	959629fa-0d96-4774-a99c-c5103a42d8d8	158777de-8f13-42b8-847c-a5951a7246a2	7	136587920	136587920	C	A	SNP	MIR490	ENST00000384865	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.422	-	-	-	no_errors	MIR490	HGNC	ENSG00000207597				154	1	0.645161	175	69	28.2787
CHRM2	0	genome.wustl.edu	37	7	136699991	136699991	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-4371-01A-01D-1158-08	TCGA-BR-4371-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	959629fa-0d96-4774-a99c-c5103a42d8d8	158777de-8f13-42b8-847c-a5951a7246a2	7	136699991	136699991	A	G	SNP	CHRM2	ENST00000320658	human	ensembl	74_37	+1	known	missense	c.379	p.K127E	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Musac_Ach_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Musac_Ach_M2_rcpt,prints_Musac_Ach_rcpt,prints_GPCR_Rhodpsn	-	no_errors	CHRM2	HGNC	ENSG00000181072				172	0	0	177	38	17.6744
HECW1	0	genome.wustl.edu	37	7	43351573	43351573	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4371-01A-01D-1158-08	TCGA-BR-4371-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	959629fa-0d96-4774-a99c-c5103a42d8d8	158777de-8f13-42b8-847c-a5951a7246a2	7	43351573	43351573	C	T	SNP	HECW1	ENST00000395891	human	ensembl	74_37	+1	known	missense	c.239	p.T80M	1.000	NULL	pfam_HECT,pfam_WW_dom,pfam_C2_dom,superfamily_HECT,superfamily_WW_dom,superfamily_C2_dom,smart_C2_dom,smart_WW_dom,smart_HECT,pfscan_HECT,pfscan_C2_dom,pfscan_WW_dom	-	no_errors	HECW1	HGNC	ENSG00000002746				103	0	0	61	78	56.1151
PCLO	0	genome.wustl.edu	37	7	82584626	82584626	+	Silent	SNP	T	T	C			TCGA-BR-4371-01A-01D-1158-08	TCGA-BR-4371-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	959629fa-0d96-4774-a99c-c5103a42d8d8	158777de-8f13-42b8-847c-a5951a7246a2	7	82584626	82584626	T	C	SNP	PCLO	ENST00000333891	human	ensembl	74_37	-1	known	silent	c.5643	p.Q1881	0.964	NULL	pfam_Znf_piccolo,pfam_C2_dom,pfam_PDZ,superfamily_C2_dom,superfamily_PDZ,superfamily_Znf_FYVE_PHD,smart_PDZ,smart_C2_dom,pfscan_C2_dom,pfscan_PDZ	-	no_errors	PCLO	HGNC	ENSG00000186472				72	0	0	80	9	10.1124
TRRAP	0	genome.wustl.edu	37	7	98522858	98522858	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4371-01A-01D-1158-08	TCGA-BR-4371-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	959629fa-0d96-4774-a99c-c5103a42d8d8	158777de-8f13-42b8-847c-a5951a7246a2	7	98522858	98522858	G	A	SNP	TRRAP	ENST00000359863	human	ensembl	74_37	+1	known	missense	c.2947	p.A983T	0.976	superfamily_ARM-type_fold	pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	TRRAP	HGNC	ENSG00000196367				133	0	0	188	83	30.6273
RIMS2	0	genome.wustl.edu	37	8	104955138	104955138	+	Silent	SNP	A	A	G			TCGA-BR-4371-01A-01D-1158-08	TCGA-BR-4371-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	959629fa-0d96-4774-a99c-c5103a42d8d8	158777de-8f13-42b8-847c-a5951a7246a2	8	104955138	104955138	A	G	SNP	RIMS2	ENST00000406091	human	ensembl	74_37	+1	known	silent	c.2685	p.P895	0.907	NULL	pfam_C2_dom,pfam_PDZ,superfamily_C2_dom,superfamily_Znf_FYVE_PHD,superfamily_PDZ,smart_PDZ,smart_C2_dom,pfscan_C2_dom,pfscan_PDZ,pfscan_Znf_FYVE-typ,pfscan_Znf_FYVE-rel	-	no_errors	RIMS2	HGNC	ENSG00000176406				82	0	0	146	17	10.4294
C8orf31	0	genome.wustl.edu	37	8	144126205	144126205	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4371-01A-01D-1158-08	TCGA-BR-4371-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	959629fa-0d96-4774-a99c-c5103a42d8d8	158777de-8f13-42b8-847c-a5951a7246a2	8	144126205	144126205	C	T	SNP	C8orf31	ENST00000395172	human	ensembl	74_37	+1	known	missense	c.326	p.A109V	0.003	NULL	NULL	-	no_errors	C8orf31	HGNC	ENSG00000177335				36	0	0	81	12	12.9032
SCRT1	0	genome.wustl.edu	37	8	145557341	145557341	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4371-01A-01D-1158-08	TCGA-BR-4371-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	959629fa-0d96-4774-a99c-c5103a42d8d8	158777de-8f13-42b8-847c-a5951a7246a2	8	145557341	145557341	C	T	SNP	SCRT1	ENST00000332135	human	ensembl	74_37	-1	known	missense	c.553	p.A185T	0.850	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	SCRT1	HGNC	ENSG00000170616				11	0	0	14	5	26.3158
TEX15	0	genome.wustl.edu	37	8	30699870	30699870	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4371-01A-01D-1158-08	TCGA-BR-4371-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	959629fa-0d96-4774-a99c-c5103a42d8d8	158777de-8f13-42b8-847c-a5951a7246a2	8	30699870	30699870	C	A	SNP	TEX15	ENST00000256246	human	ensembl	74_37	-1	known	missense	c.6664	p.D2222Y	1.000	NULL	NULL	-	no_errors	TEX15	HGNC	ENSG00000133863				178	0	0	246	44	15.1724
ADAM32	0	genome.wustl.edu	37	8	39080734	39080734	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4371-01A-01D-1158-08	TCGA-BR-4371-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	959629fa-0d96-4774-a99c-c5103a42d8d8	158777de-8f13-42b8-847c-a5951a7246a2	8	39080734	39080734	G	A	SNP	ADAM32	ENST00000379907	human	ensembl	74_37	+1	known	missense	c.1502	p.R501H	0.000	pfam_ADAM_Cys-rich,smart_ADAM_Cys-rich	pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_ADAM_Cys-rich,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_EG-like_dom,pfscan_Peptidase_M12B	-	no_errors	ADAM32	HGNC	ENSG00000197140				20	0	0	21	14	40
RP1	0	genome.wustl.edu	37	8	55540977	55540977	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-4371-01A-01D-1158-08	TCGA-BR-4371-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	959629fa-0d96-4774-a99c-c5103a42d8d8	158777de-8f13-42b8-847c-a5951a7246a2	8	55540977	55540977	A	C	SNP	RP1	ENST00000220676	human	ensembl	74_37	+1	known	missense	c.4535	p.K1512T	0.000	NULL	pfam_Doublecortin_dom,smart_Doublecortin_dom,pfscan_Doublecortin_dom	-	no_errors	RP1	HGNC	ENSG00000104237				74	0	0	115	43	27.2152
CHD7	0	genome.wustl.edu	37	8	61778367	61778367	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4371-01A-01D-1158-08	TCGA-BR-4371-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	959629fa-0d96-4774-a99c-c5103a42d8d8	158777de-8f13-42b8-847c-a5951a7246a2	8	61778367	61778367	G	A	SNP	CHD7	ENST00000423902	human	ensembl	74_37	+1	known	missense	c.8869	p.D2957N	1.000	NULL	pfam_SNF2_N,pfam_BRK_domain,pfam_Chromo_domain,pfam_Helicase_C,superfamily_P-loop_NTPase,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,smart_BRK_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD7	HGNC	ENSG00000171316				45	0	0	38	22	36.6667
PREX2	0	genome.wustl.edu	37	8	69002885	69002885	+	Nonsense_Mutation	SNP	A	A	T			TCGA-BR-4371-01A-01D-1158-08	TCGA-BR-4371-11A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	959629fa-0d96-4774-a99c-c5103a42d8d8	158777de-8f13-42b8-847c-a5951a7246a2	8	69002885	69002885	A	T	SNP	PREX2	ENST00000288368	human	ensembl	74_37	+1	known	nonsense	c.2185	p.K729*	1.000	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_DH-domain,pfam_DEP_dom,pfam_PDZ,superfamily_DH-domain,superfamily_PDZ,smart_DH-domain,smart_Pleckstrin_homology,smart_DEP_dom,smart_PDZ,pfscan_DEP_dom,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PREX2	HGNC	ENSG00000046889				112	0	0	82	129	61.1374
TRPA1	0	genome.wustl.edu	37	8	72959382	72959382	+	Splice_Site	SNP	C	C	A			TCGA-BR-4371-01A-01D-1158-08	TCGA-BR-4371-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	959629fa-0d96-4774-a99c-c5103a42d8d8	158777de-8f13-42b8-847c-a5951a7246a2	8	72959382	72959382	C	A	SNP	TRPA1	ENST00000262209	human	ensembl	74_37	-1	known	splice_site	c.1965+1	e16+1	1.000	-	-	-	no_errors	TRPA1	HGNC	ENSG00000104321				68	0	0	158	22	12.2222
ZNF704	0	genome.wustl.edu	37	8	81553607	81553607	+	Silent	SNP	G	G	A			TCGA-BR-4371-01A-01D-1158-08	TCGA-BR-4371-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	959629fa-0d96-4774-a99c-c5103a42d8d8	158777de-8f13-42b8-847c-a5951a7246a2	8	81553607	81553607	G	A	SNP	ZNF704	ENST00000327835	human	ensembl	74_37	-1	known	silent	c.1233	p.L411	0.123	NULL	pfscan_Znf_C2H2	-	no_errors	ZNF704	HGNC	ENSG00000164684				27	0	0	47	9	16.0714
COL15A1	0	genome.wustl.edu	37	9	101706323	101706323	+	RNA	SNP	G	G	A			TCGA-BR-4371-01A-01D-1158-08	TCGA-BR-4371-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	959629fa-0d96-4774-a99c-c5103a42d8d8	158777de-8f13-42b8-847c-a5951a7246a2	9	101706323	101706323	G	A	SNP	COL15A1	ENST00000467052	human	ensembl	74_37	+1	putative	rna	NULL	NULL	0.070	-	-	-	no_errors	COL15A1	HGNC	ENSG00000204291				68	0	0	61	15	19.7368
ASTN2	0	genome.wustl.edu	37	9	119858332	119858332	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-4371-01A-01D-1158-08	TCGA-BR-4371-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	959629fa-0d96-4774-a99c-c5103a42d8d8	158777de-8f13-42b8-847c-a5951a7246a2	9	119858332	119858332	G	A	SNP	ASTN2	ENST00000313400	human	ensembl	74_37	-1	known	missense	c.1267	p.R423C	1.000	NULL	pfam_MACPF,superfamily_Fibronectin_type3,smart_MACPF	-	no_errors	ASTN2	HGNC	ENSG00000148219				81	0	0	72	41	36.2832
LAMC3	0	genome.wustl.edu	37	9	133936523	133936523	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4371-01A-01D-1158-08	TCGA-BR-4371-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	959629fa-0d96-4774-a99c-c5103a42d8d8	158777de-8f13-42b8-847c-a5951a7246a2	9	133936523	133936523	C	A	SNP	LAMC3	ENST00000361069	human	ensembl	74_37	+1	known	missense	c.2260	p.P754T	1.000	smart_EG-like_dom,pfscan_EGF_laminin	pfam_EGF_laminin,pfam_Laminin_N,pfam_Laminin_B_type_IV,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,smart_Laminin_B_subgr,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_N	-	no_errors	LAMC3	HGNC	ENSG00000050555				38	0	0	31	19	38
RALGDS	0	genome.wustl.edu	37	9	135978249	135978249	+	Silent	SNP	C	C	T			TCGA-BR-4371-01A-01D-1158-08	TCGA-BR-4371-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	959629fa-0d96-4774-a99c-c5103a42d8d8	158777de-8f13-42b8-847c-a5951a7246a2	9	135978249	135978249	C	T	SNP	RALGDS	ENST00000542690	human	ensembl	74_37	-1	known	silent	c.2043	p.S681	0.546	superfamily_Ras_GEF_dom,smart_RasGRF_CDC25,pfscan_RasGRF_CDC25	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,pfam_Ras-assoc,superfamily_Ras_GEF_dom,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,smart_Ras-assoc,pfscan_Ras-assoc,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RALGDS	HGNC	ENSG00000160271				34	0	0	31	22	41.5094
COL5A1	0	genome.wustl.edu	37	9	137734065	137734065	+	Silent	SNP	C	C	A			TCGA-BR-4371-01A-01D-1158-08	TCGA-BR-4371-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	959629fa-0d96-4774-a99c-c5103a42d8d8	158777de-8f13-42b8-847c-a5951a7246a2	9	137734065	137734065	C	A	SNP	COL5A1	ENST00000371817	human	ensembl	74_37	+1	known	silent	c.5433	p.P1811	0.993	pfam_Fib_collagen_C,smart_Fib_collagen_C	pfam_Collagen,pfam_Fib_collagen_C,pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,superfamily_Fibrinogen_a/b/g_C_dom,smart_Laminin_G,smart_Fib_collagen_C	-	no_errors	COL5A1	HGNC	ENSG00000130635				74	0	0	88	18	16.9811
GRHPR	0	genome.wustl.edu	37	9	37422818	37422818	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4371-01A-01D-1158-08	TCGA-BR-4371-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	959629fa-0d96-4774-a99c-c5103a42d8d8	158777de-8f13-42b8-847c-a5951a7246a2	9	37422818	37422818	C	T	SNP	GRHPR	ENST00000318158	human	ensembl	74_37	+1	known	missense	c.71	p.A24V	0.822	pfam_D-isomer_2_OHA_DH_cat_dom	pfam_D-isomer_2_OHA_DH_NAD-bd,pfam_D-isomer_2_OHA_DH_cat_dom,pfam_6PGDH_NADP-bd	-	no_errors	GRHPR	HGNC	ENSG00000137106				13	0	0	10	8	44.4444
DOCK11	0	genome.wustl.edu	37	X	117748655	117748655	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4371-01A-01D-1158-08	TCGA-BR-4371-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	959629fa-0d96-4774-a99c-c5103a42d8d8	158777de-8f13-42b8-847c-a5951a7246a2	X	117748655	117748655	C	T	SNP	DOCK11	ENST00000276202	human	ensembl	74_37	+1	known	missense	c.3097	p.R1033C	1.000	NULL	pfam_DOCK_C,pfam_DOCK_C/D_N,pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	DOCK11	HGNC	ENSG00000147251				166	0	0	181	73	28.7402
IGSF1	0	genome.wustl.edu	37	X	130419221	130419221	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4371-01A-01D-1158-08	TCGA-BR-4371-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	959629fa-0d96-4774-a99c-c5103a42d8d8	158777de-8f13-42b8-847c-a5951a7246a2	X	130419221	130419221	C	T	SNP	IGSF1	ENST00000370903	human	ensembl	74_37	-1	known	missense	c.599	p.R200H	1.000	smart_Ig_sub,smart_Ig_sub2	pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	IGSF1	HGNC	ENSG00000147255				204	0	0	156	98	38.5827
CDKL5	0	genome.wustl.edu	37	X	18671592	18671592	+	Silent	SNP	G	G	T			TCGA-BR-4371-01A-01D-1158-08	TCGA-BR-4371-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	959629fa-0d96-4774-a99c-c5103a42d8d8	158777de-8f13-42b8-847c-a5951a7246a2	X	18671592	18671592	G	T	SNP	CDKL5	ENST00000379989	human	ensembl	74_37	+1	known	silent	c.3021	p.L1007	0.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	CDKL5	HGNC	ENSG00000008086				55	0	0	68	15	18.0723
MAGEB6	0	genome.wustl.edu	37	X	26212639	26212639	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-4371-01A-01D-1158-08	TCGA-BR-4371-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	959629fa-0d96-4774-a99c-c5103a42d8d8	158777de-8f13-42b8-847c-a5951a7246a2	X	26212639	26212639	C	T	SNP	MAGEB6	ENST00000379034	human	ensembl	74_37	+1	known	missense	c.676	p.R226C	0.000	pfam_MAGE,pfscan_MAGE	pfam_MAGE,pfam_Melanoma_ass_antigen_N,pfscan_MAGE	-	no_errors	MAGEB6	HGNC	ENSG00000176746				119	0	0	68	92	57.5
ZNF81	0	genome.wustl.edu	37	X	47775487	47775487	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-4371-01A-01D-1158-08	TCGA-BR-4371-11A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	959629fa-0d96-4774-a99c-c5103a42d8d8	158777de-8f13-42b8-847c-a5951a7246a2	X	47775487	47775487	C	A	SNP	ZNF81	ENST00000338637	human	ensembl	74_37	+1	known	missense	c.1442	p.S481Y	0.980	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF81	HGNC	ENSG00000197779				113	0	0	118	40	25.3165
ENSG00000232593	0	genome.wustl.edu	37	X	53171977	53171977	+	RNA	SNP	G	G	A			TCGA-BR-4371-01A-01D-1158-08	TCGA-BR-4371-11A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	959629fa-0d96-4774-a99c-c5103a42d8d8	158777de-8f13-42b8-847c-a5951a7246a2	X	53171977	53171977	G	A	SNP	ENSG00000232593	ENST00000604849	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.200	-	-	-	no_errors	RP11-258C19.5	Clone_based_vega_gene	ENSG00000232593				23	0	0	40	7	14.8936
TRIM51HP	0	genome.wustl.edu	37	11	55065032	55065032	+	RNA	DEL	T	T	-			TCGA-BR-4371-01A-01D-1158-08	TCGA-BR-4371-11A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	959629fa-0d96-4774-a99c-c5103a42d8d8	158777de-8f13-42b8-847c-a5951a7246a2	11	55065032	55065032	T	-	DEL	TRIM51HP	ENST00000526016	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.010	-	-	-	no_errors	TRIM51HP	HGNC	ENSG00000166007				64	0	0	68	14	17.0732
PODXL	0	genome.wustl.edu	37	7	131241030	131241035	+	In_Frame_Del	DEL	GGCGAC	GGCGAC	-			TCGA-BR-4371-01A-01D-1158-08	TCGA-BR-4371-11A-01D-1158-08	GGCGAC	GGCGAC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	959629fa-0d96-4774-a99c-c5103a42d8d8	158777de-8f13-42b8-847c-a5951a7246a2	7	131241030	131241035	GGCGAC	-	DEL	PODXL	ENST00000541194	human	ensembl	74_37	-1	known	in_frame_del	c.89_84	p.PS30in_frame_del	0.003:0.005:0.005:0.006:0.006:0.006	pirsf_Podocalyxin-like_p1	pfam_CD34/Podocalyxin,pirsf_Podocalyxin-like_p1	-	no_errors	PODXL	HGNC	ENSG00000128567				8	0	0	9	6	40
PTGDS	0	genome.wustl.edu	37	9	139875318	139875319	+	RNA	INS	-	-	CATT			TCGA-BR-4371-01A-01D-1158-08	TCGA-BR-4371-11A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	959629fa-0d96-4774-a99c-c5103a42d8d8	158777de-8f13-42b8-847c-a5951a7246a2	9	139875318	139875319	-	CATT	INS	PTGDS	ENST00000462514	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	PTGDS	HGNC	ENSG00000107317				24	0	0	30	7	18.9189
